Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051917.t1 | GAU17568.1 | 62.2 | 352 | 104 | 3 | 1 | 352 | 404 | 726 | 5.60E-111 | 411 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051917.t1 | Q9FPT1 | 40.7 | 123 | 70 | 2 | 41 | 162 | 63 | 183 | 1.8e-20 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051917.t1 | A0A392MFG0 | 63.6 | 352 | 99 | 3 | 1 | 352 | 4 | 326 | 3.5e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030037 | MS.gene051917 | PPI |
| MS.gene017099 | MS.gene051917 | PPI |
| MS.gene057069 | MS.gene051917 | PPI |
| MS.gene038323 | MS.gene051917 | PPI |
| MS.gene038333 | MS.gene051917 | PPI |
| MS.gene017100 | MS.gene051917 | PPI |
| MS.gene030029 | MS.gene051917 | PPI |
| MS.gene030026 | MS.gene051917 | PPI |
| MS.gene038330 | MS.gene051917 | PPI |
| MS.gene017102 | MS.gene051917 | PPI |
| MS.gene017101 | MS.gene051917 | PPI |
| MS.gene030042 | MS.gene051917 | PPI |
| MS.gene038342 | MS.gene051917 | PPI |
| MS.gene030034 | MS.gene051917 | PPI |
| MS.gene038324 | MS.gene051917 | PPI |
| MS.gene038300 | MS.gene051917 | PPI |
| MS.gene017083 | MS.gene051917 | PPI |
| MS.gene038327 | MS.gene051917 | PPI |
| MS.gene030033 | MS.gene051917 | PPI |
| MS.gene057070 | MS.gene051917 | PPI |
| MS.gene038326 | MS.gene051917 | PPI |
| MS.gene038328 | MS.gene051917 | PPI |
| MS.gene057090 | MS.gene051917 | PPI |
| MS.gene017115 | MS.gene051917 | PPI |
| MS.gene038336 | MS.gene051917 | PPI |
| MS.gene057065 | MS.gene051917 | PPI |
| MS.gene030045 | MS.gene051917 | PPI |
| MS.gene057066 | MS.gene051917 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051917.t1 | MTR_7g107200 | 47.354 | 378 | 154 | 3 | 22 | 354 | 1 | 378 | 1.20e-114 | 338 |
| MS.gene051917.t1 | MTR_7g107160 | 55.652 | 345 | 122 | 11 | 24 | 354 | 120 | 447 | 7.37e-107 | 320 |
| MS.gene051917.t1 | MTR_7g107160 | 67.033 | 91 | 30 | 0 | 89 | 179 | 1 | 91 | 2.72e-33 | 128 |
| MS.gene051917.t1 | MTR_1g042160 | 50.151 | 331 | 140 | 5 | 22 | 350 | 1 | 308 | 2.67e-103 | 306 |
| MS.gene051917.t1 | MTR_8g011730 | 36.901 | 355 | 176 | 9 | 32 | 351 | 12 | 353 | 2.71e-68 | 218 |
| MS.gene051917.t1 | MTR_7g107170 | 58.385 | 161 | 59 | 1 | 190 | 350 | 111 | 263 | 4.79e-53 | 176 |
| MS.gene051917.t1 | MTR_7g107170 | 78.161 | 87 | 19 | 0 | 255 | 341 | 1 | 87 | 9.27e-37 | 134 |
| MS.gene051917.t1 | MTR_2g034780 | 41.096 | 146 | 83 | 1 | 200 | 345 | 119 | 261 | 9.35e-31 | 118 |
| MS.gene051917.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 58 | 185 | 1.35e-26 | 111 |
| MS.gene051917.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 59 | 186 | 1.38e-26 | 111 |
| MS.gene051917.t1 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 57 | 184 | 1.47e-26 | 111 |
| MS.gene051917.t1 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 57 | 184 | 2.51e-26 | 110 |
| MS.gene051917.t1 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 56 | 183 | 2.60e-26 | 110 |
| MS.gene051917.t1 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 4.45e-25 | 107 |
| MS.gene051917.t1 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 4.45e-25 | 107 |
| MS.gene051917.t1 | MTR_5g091450 | 34.921 | 126 | 80 | 2 | 34 | 158 | 33 | 157 | 8.28e-22 | 97.4 |
| MS.gene051917.t1 | MTR_5g091180 | 32.258 | 155 | 95 | 4 | 34 | 187 | 46 | 191 | 3.35e-18 | 86.3 |
| MS.gene051917.t1 | MTR_5g091550 | 31.613 | 155 | 95 | 3 | 32 | 185 | 17 | 161 | 7.17e-18 | 85.1 |
| MS.gene051917.t1 | MTR_5g091550 | 32.353 | 136 | 89 | 2 | 32 | 166 | 17 | 150 | 1.92e-17 | 83.6 |
| MS.gene051917.t1 | MTR_3g106700 | 27.811 | 169 | 108 | 2 | 8 | 162 | 376 | 544 | 8.49e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051917.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 4.94e-27 | 112 |
| MS.gene051917.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 55 | 182 | 5.76e-27 | 112 |
| MS.gene051917.t1 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 5.82e-27 | 112 |
| MS.gene051917.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 3.13e-26 | 110 |
| MS.gene051917.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 3.13e-26 | 110 |
| MS.gene051917.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 3.31e-26 | 110 |
| MS.gene051917.t1 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 3.31e-26 | 110 |
| MS.gene051917.t1 | AT3G58250 | 26.866 | 335 | 194 | 11 | 22 | 338 | 1 | 302 | 2.56e-18 | 84.7 |
| MS.gene051917.t1 | AT3G58410 | 34.646 | 127 | 77 | 3 | 33 | 158 | 7 | 128 | 1.75e-16 | 79.7 |
| MS.gene051917.t1 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 2.35e-15 | 76.3 |
| MS.gene051917.t1 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 2.73e-15 | 76.3 |
| MS.gene051917.t1 | AT3G44790 | 25.641 | 312 | 207 | 9 | 32 | 329 | 3 | 303 | 5.04e-15 | 75.5 |
| MS.gene051917.t1 | AT3G58210 | 32.031 | 128 | 86 | 1 | 34 | 160 | 8 | 135 | 9.87e-15 | 74.7 |
| MS.gene051917.t1 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.35e-14 | 73.9 |
| MS.gene051917.t1 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.35e-14 | 73.9 |
| MS.gene051917.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.02e-14 | 73.9 |
| MS.gene051917.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.02e-14 | 73.9 |
| MS.gene051917.t1 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.02e-14 | 73.9 |
| MS.gene051917.t1 | AT3G58370 | 33.333 | 129 | 80 | 4 | 34 | 158 | 9 | 135 | 2.47e-13 | 70.1 |
| MS.gene051917.t1 | AT3G58410 | 33.071 | 127 | 65 | 3 | 33 | 158 | 28 | 135 | 2.67e-13 | 70.5 |
| MS.gene051917.t1 | AT3G44800 | 30.769 | 130 | 88 | 2 | 32 | 160 | 3 | 131 | 4.17e-13 | 70.1 |
| MS.gene051917.t1 | AT3G58260 | 27.517 | 298 | 177 | 10 | 35 | 325 | 9 | 274 | 2.66e-12 | 67.4 |
| MS.gene051917.t1 | AT2G05410 | 31.496 | 127 | 85 | 2 | 35 | 160 | 9 | 134 | 5.64e-12 | 66.2 |
| MS.gene051917.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 404 | 560 | 1.82e-11 | 66.2 |
| MS.gene051917.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 1.82e-11 | 66.2 |
| MS.gene051917.t1 | AT3G58200 | 33.621 | 116 | 73 | 3 | 34 | 147 | 8 | 121 | 2.18e-11 | 64.7 |
| MS.gene051917.t1 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 2.57e-11 | 65.9 |
Find 68 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGATCTTCAAACTTTC+TGG | 0.140117 | 7.1:+6028435 | MS.gene051917:CDS |
| CCATGAGCTCACTTACATTT+TGG | 0.177848 | 7.1:-6028220 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.236977 | 7.1:-6028470 | None:intergenic |
| CTTCTTCTAGCTTTGGCCTT+AGG | 0.245031 | 7.1:-6028190 | None:intergenic |
| ATGGAATAAAGCTTGGAATA+TGG | 0.257239 | 7.1:+6027215 | MS.gene051917:CDS |
| AGAAAAGAAGTCGCAAGTTT+AGG | 0.259373 | 7.1:+6028333 | MS.gene051917:CDS |
| CCTAGTGTTCAATCGGCTTT+AGG | 0.267455 | 7.1:+6028500 | MS.gene051917:CDS |
| CTCGCACCTTTCTTGTCTTA+AGG | 0.292864 | 7.1:-6028394 | None:intergenic |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | 7.1:+6028355 | MS.gene051917:CDS |
| CCTTGGCCTTCTTCTAGCTT+TGG | 0.325091 | 7.1:-6028197 | None:intergenic |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | 7.1:+6028356 | MS.gene051917:CDS |
| GAAAAGAAGTCGCAAGTTTA+GGG | 0.346429 | 7.1:+6028334 | MS.gene051917:CDS |
| TTCTTCTAGCTTTGGCCTTA+GGG | 0.362417 | 7.1:-6028189 | None:intergenic |
| TTCTATGTGTCCCATACCCT+TGG | 0.390125 | 7.1:-6028246 | None:intergenic |
| TTCACAATAAACCCCTTGTT+AGG | 0.392129 | 7.1:-6028080 | None:intergenic |
| TGATGCTGCAAGAGACTTGT+TGG | 0.396572 | 7.1:+6028640 | MS.gene051917:CDS |
| TAAGGATCTTCAAACTTTCT+GGG | 0.397628 | 7.1:+6028436 | MS.gene051917:CDS |
| TATGAATGACTTGGCTTGTA+AGG | 0.404544 | 7.1:+6028418 | MS.gene051917:CDS |
| TGGAATAAAGCTTGGAATAT+GGG | 0.416500 | 7.1:+6027216 | MS.gene051917:CDS |
| GCTCATGGATTCCAAGGGTA+TGG | 0.447022 | 7.1:+6028235 | MS.gene051917:CDS |
| AGGATAATTTATCTGTCTAA+AGG | 0.447245 | 7.1:+6027473 | MS.gene051917:intron |
| AGCAACATTGCAATCACAAA+AGG | 0.454741 | 7.1:+6027617 | MS.gene051917:CDS |
| CCTAAAGCCGATTGAACACT+AGG | 0.454981 | 7.1:-6028500 | None:intergenic |
| CATTTAATTTCAATTTGACT+TGG | 0.459388 | 7.1:+6028471 | MS.gene051917:CDS |
| GTTAGAGCCTAGTGTTCAAT+CGG | 0.460269 | 7.1:+6028493 | MS.gene051917:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7.1:+6028683 | MS.gene051917:CDS |
| TAGCTTTGGCCTTAGGGAAG+CGG | 0.483205 | 7.1:-6028183 | None:intergenic |
| GGTAGCTCAAGAGTTGGAAT+TGG | 0.485466 | 7.1:+6028577 | MS.gene051917:CDS |
| GGATAGCCGCCTAGGACAAA+AGG | 0.485898 | 7.1:-6027327 | None:intergenic |
| CCAAAATGTAAGTGAGCTCA+TGG | 0.490013 | 7.1:+6028220 | MS.gene051917:CDS |
| ACTCTACATGGAATAAAGCT+TGG | 0.491560 | 7.1:+6027208 | MS.gene051917:CDS |
| AAGTCGCAAGTTTAGGGAAT+GGG | 0.503721 | 7.1:+6028340 | MS.gene051917:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 7.1:+6028388 | MS.gene051917:CDS |
| TTGTCCTAGGCGGCTATCCA+TGG | 0.509014 | 7.1:+6027331 | MS.gene051917:CDS |
| AGAAAAGCTAAAGGATAATG+TGG | 0.523643 | 7.1:+6028556 | MS.gene051917:CDS |
| TGCTGGCACTCAATAAGTGA+AGG | 0.542266 | 7.1:-6028311 | None:intergenic |
| CTAAGGCCAAAGCTAGAAGA+AGG | 0.558810 | 7.1:+6028191 | MS.gene051917:CDS |
| TAATGTGGTAGCTCAAGAGT+TGG | 0.559742 | 7.1:+6028571 | MS.gene051917:CDS |
| AAGTGAGCTCATGGATTCCA+AGG | 0.561824 | 7.1:+6028229 | MS.gene051917:CDS |
| CTCATGGATTCCAAGGGTAT+GGG | 0.563344 | 7.1:+6028236 | MS.gene051917:CDS |
| AAACATACTTCATCTAGTAA+TGG | 0.564644 | 7.1:-6028281 | None:intergenic |
| CATACCATGGATAGCCGCCT+AGG | 0.565038 | 7.1:-6027335 | None:intergenic |
| GCAAACTGCGAATATGTTTG+AGG | 0.565917 | 7.1:+6027544 | MS.gene051917:CDS |
| AAAAGTTTGAGAAATTTACA+TGG | 0.568464 | 7.1:+6027259 | MS.gene051917:CDS |
| GAATTTCTCTCGCTTGAACA+AGG | 0.568755 | 7.1:+6027290 | MS.gene051917:CDS |
| GAAGTCGCAAGTTTAGGGAA+TGG | 0.569896 | 7.1:+6028339 | MS.gene051917:CDS |
| GTAACTTAACCGCTTCCCTA+AGG | 0.570009 | 7.1:+6028174 | MS.gene051917:CDS |
| AGAAGTTTGAGAACTCTACA+TGG | 0.576561 | 7.1:+6027196 | MS.gene051917:CDS |
| TCTAAAGGTGGGAGGAACAC+AGG | 0.578325 | 7.1:+6027488 | MS.gene051917:CDS |
| GCCGCCTAGGACAAAAGGCT+CGG | 0.579082 | 7.1:-6027322 | None:intergenic |
| AAAGGAGGTAGAAAAGCTAA+AGG | 0.580307 | 7.1:+6028547 | MS.gene051917:CDS |
| TTCATCTAGTAATGGAACAA+AGG | 0.580421 | 7.1:-6028273 | None:intergenic |
| CTGCGAATATGTTTGAGGGA+TGG | 0.586576 | 7.1:+6027549 | MS.gene051917:CDS |
| GAGAAACGACTAAATCAAGA+AGG | 0.587356 | 7.1:+6028152 | MS.gene051917:CDS |
| ATAATTTATCTGTCTAAAGG+TGG | 0.588720 | 7.1:+6027476 | MS.gene051917:CDS |
| CTCAAGAGTTGGAATTGGAG+AGG | 0.595626 | 7.1:+6028582 | MS.gene051917:CDS |
| TAATTTATCTGTCTAAAGGT+GGG | 0.604853 | 7.1:+6027477 | MS.gene051917:CDS |
| TGAGCTTCATGATCCTAACA+AGG | 0.607224 | 7.1:+6028067 | MS.gene051917:CDS |
| CAAACTGCGAATATGTTTGA+GGG | 0.611736 | 7.1:+6027545 | MS.gene051917:CDS |
| GGTGCGAGATATGAATGACT+TGG | 0.624462 | 7.1:+6028409 | MS.gene051917:CDS |
| TGCTGCAAGAGACTTGTTGG+AGG | 0.627839 | 7.1:+6028643 | MS.gene051917:CDS |
| GCTGGCACTCAATAAGTGAA+GGG | 0.632129 | 7.1:-6028310 | None:intergenic |
| AGCTTCATGATCCTAACAAG+GGG | 0.641496 | 7.1:+6028069 | MS.gene051917:CDS |
| CCAAAGCTAGAAGAAGGCCA+AGG | 0.642510 | 7.1:+6028197 | MS.gene051917:CDS |
| GAGCTTCATGATCCTAACAA+GGG | 0.645789 | 7.1:+6028068 | MS.gene051917:CDS |
| AGTGAGCTCATGGATTCCAA+GGG | 0.660252 | 7.1:+6028230 | MS.gene051917:CDS |
| TTTATCTGTCTAAAGGTGGG+AGG | 0.662324 | 7.1:+6027480 | MS.gene051917:CDS |
| GGATCTTCAAACTTTCTGGG+AGG | 0.688818 | 7.1:+6028439 | MS.gene051917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTAATTTCATTATTATA+AGG | - | chr7.1:6027783-6027802 | None:intergenic | 10.0% |
| !! | AATTTCATTATTATACTAAC+CGG | - | chr7.1:6027759-6027778 | None:intergenic | 15.0% |
| !! | AAAAGTTTGAGAAATTTACA+TGG | + | chr7.1:6027259-6027278 | MS.gene051917:CDS | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr7.1:6028473-6028492 | None:intergenic | 20.0% |
| !! | CATGTTACAATTTATTAGAT+CGG | + | chr7.1:6027381-6027400 | MS.gene051917:intron | 20.0% |
| !!! | AAGTTATTTTGAGAAACTAA+AGG | + | chr7.1:6028529-6028548 | MS.gene051917:CDS | 20.0% |
| !!! | ATTTTTTTTATCAAAGCAAC+CGG | + | chr7.1:6027737-6027756 | MS.gene051917:intron | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr7.1:6028471-6028490 | MS.gene051917:CDS | 20.0% |
| ! | AAACATACTTCATCTAGTAA+TGG | - | chr7.1:6028284-6028303 | None:intergenic | 25.0% |
| ! | AGGATAATTTATCTGTCTAA+AGG | + | chr7.1:6027473-6027492 | MS.gene051917:intron | 25.0% |
| ! | ATAATTTATCTGTCTAAAGG+TGG | + | chr7.1:6027476-6027495 | MS.gene051917:CDS | 25.0% |
| ! | TAATTTATCTGTCTAAAGGT+GGG | + | chr7.1:6027477-6027496 | MS.gene051917:CDS | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr7.1:6028388-6028407 | MS.gene051917:CDS | 25.0% |
| ! | TTCAATAATTGTTTGTAGAG+AGG | - | chr7.1:6027656-6027675 | None:intergenic | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.1:6027351-6027370 | None:intergenic | 25.0% |
| ! | TTGAATTCATAGTTAGATTC+TGG | - | chr7.1:6028002-6028021 | None:intergenic | 25.0% |
| !! | AAAATACTCTTTTACACGTA+CGG | + | chr7.1:6027408-6027427 | MS.gene051917:intron | 25.0% |
| !!! | ATTACCATTGACTGAAATTT+TGG | + | chr7.1:6027899-6027918 | MS.gene051917:intron | 25.0% |
| !!! | GATATGATTTGGTTTTGTTT+AGG | + | chr7.1:6027453-6027472 | MS.gene051917:intron | 25.0% |
| !!! | GTGTTTTGAATGATATGATT+TGG | + | chr7.1:6027442-6027461 | MS.gene051917:intron | 25.0% |
| !!! | TTATTTTGAGAAACTAAAGG+AGG | + | chr7.1:6028532-6028551 | MS.gene051917:CDS | 25.0% |
| AGAAAAGCTAAAGGATAATG+TGG | + | chr7.1:6028556-6028575 | MS.gene051917:CDS | 30.0% | |
| AGAACCAAAATTTCAGTCAA+TGG | - | chr7.1:6027906-6027925 | None:intergenic | 30.0% | |
| ATGGAATAAAGCTTGGAATA+TGG | + | chr7.1:6027215-6027234 | MS.gene051917:CDS | 30.0% | |
| CAGCCTTCAAAAAAATTGAT+AGG | - | chr7.1:6027523-6027542 | None:intergenic | 30.0% | |
| CTAAACAAGCATATATATGC+TGG | - | chr7.1:6027850-6027869 | None:intergenic | 30.0% | |
| GTGAAAAATGCTATCATTGT+TGG | + | chr7.1:6028098-6028117 | MS.gene051917:CDS | 30.0% | |
| TAAGGATCTTCAAACTTTCT+GGG | + | chr7.1:6028436-6028455 | MS.gene051917:CDS | 30.0% | |
| TGGAATAAAGCTTGGAATAT+GGG | + | chr7.1:6027216-6027235 | MS.gene051917:CDS | 30.0% | |
| ! | GGTTCTTAGTATTTTCATAG+AGG | + | chr7.1:6027920-6027939 | MS.gene051917:intron | 30.0% |
| ! | TTCATCTAGTAATGGAACAA+AGG | - | chr7.1:6028276-6028295 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr7.1:6028670-6028689 | MS.gene051917:CDS | 30.0% |
| !!! | CAGCCTATCAATTTTTTTGA+AGG | + | chr7.1:6027517-6027536 | MS.gene051917:CDS | 30.0% |
| AAAGGAGGTAGAAAAGCTAA+AGG | + | chr7.1:6028547-6028566 | MS.gene051917:CDS | 35.0% | |
| ACTCTACATGGAATAAAGCT+TGG | + | chr7.1:6027208-6027227 | MS.gene051917:CDS | 35.0% | |
| AGAAAAGAAGTCGCAAGTTT+AGG | + | chr7.1:6028333-6028352 | MS.gene051917:CDS | 35.0% | |
| AGAAGTTTGAGAACTCTACA+TGG | + | chr7.1:6027196-6027215 | MS.gene051917:CDS | 35.0% | |
| AGCAACATTGCAATCACAAA+AGG | + | chr7.1:6027617-6027636 | MS.gene051917:CDS | 35.0% | |
| CAAACTGCGAATATGTTTGA+GGG | + | chr7.1:6027545-6027564 | MS.gene051917:CDS | 35.0% | |
| GAAAAGAAGTCGCAAGTTTA+GGG | + | chr7.1:6028334-6028353 | MS.gene051917:CDS | 35.0% | |
| GAGAAACGACTAAATCAAGA+AGG | + | chr7.1:6028152-6028171 | MS.gene051917:CDS | 35.0% | |
| GTAAGGATCTTCAAACTTTC+TGG | + | chr7.1:6028435-6028454 | MS.gene051917:CDS | 35.0% | |
| TTCACAATAAACCCCTTGTT+AGG | - | chr7.1:6028083-6028102 | None:intergenic | 35.0% | |
| ! | AATGCAAGTCAGTTTTTCTG+GGG | + | chr7.1:6028020-6028039 | MS.gene051917:CDS | 35.0% |
| ! | CAATGCAAGTCAGTTTTTCT+GGG | + | chr7.1:6028019-6028038 | MS.gene051917:CDS | 35.0% |
| ! | TCAATGCAAGTCAGTTTTTC+TGG | + | chr7.1:6028018-6028037 | MS.gene051917:CDS | 35.0% |
| !! | TATGAATGACTTGGCTTGTA+AGG | + | chr7.1:6028418-6028437 | MS.gene051917:CDS | 35.0% |
| AAGTCGCAAGTTTAGGGAAT+GGG | + | chr7.1:6028340-6028359 | MS.gene051917:CDS | 40.0% | |
| AGCTTCATGATCCTAACAAG+GGG | + | chr7.1:6028069-6028088 | MS.gene051917:CDS | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr7.1:6028683-6028702 | MS.gene051917:CDS | 40.0% | |
| CCAAAATGTAAGTGAGCTCA+TGG | + | chr7.1:6028220-6028239 | MS.gene051917:CDS | 40.0% | |
| GAATTTCTCTCGCTTGAACA+AGG | + | chr7.1:6027290-6027309 | MS.gene051917:CDS | 40.0% | |
| GAGCTTCATGATCCTAACAA+GGG | + | chr7.1:6028068-6028087 | MS.gene051917:CDS | 40.0% | |
| GCAAACTGCGAATATGTTTG+AGG | + | chr7.1:6027544-6027563 | MS.gene051917:CDS | 40.0% | |
| GTTAGAGCCTAGTGTTCAAT+CGG | + | chr7.1:6028493-6028512 | MS.gene051917:CDS | 40.0% | |
| TAATGTGGTAGCTCAAGAGT+TGG | + | chr7.1:6028571-6028590 | MS.gene051917:CDS | 40.0% | |
| TGAGCTTCATGATCCTAACA+AGG | + | chr7.1:6028067-6028086 | MS.gene051917:CDS | 40.0% | |
| TTTATCTGTCTAAAGGTGGG+AGG | + | chr7.1:6027480-6027499 | MS.gene051917:CDS | 40.0% | |
| ! | CCATGAGCTCACTTACATTT+TGG | - | chr7.1:6028223-6028242 | None:intergenic | 40.0% |
| !! | GGCAGTAGATTTTGAAGAGA+TGG | + | chr7.1:6028664-6028683 | MS.gene051917:CDS | 40.0% |
| !! | TTCTTCTAGCTTTGGCCTTA+GGG | - | chr7.1:6028192-6028211 | None:intergenic | 40.0% |
| AAGTGAGCTCATGGATTCCA+AGG | + | chr7.1:6028229-6028248 | MS.gene051917:CDS | 45.0% | |
| AGTGAGCTCATGGATTCCAA+GGG | + | chr7.1:6028230-6028249 | MS.gene051917:CDS | 45.0% | |
| CCTAAAGCCGATTGAACACT+AGG | - | chr7.1:6028503-6028522 | None:intergenic | 45.0% | |
| CTAAGGCCAAAGCTAGAAGA+AGG | + | chr7.1:6028191-6028210 | MS.gene051917:CDS | 45.0% | |
| CTCAAGAGTTGGAATTGGAG+AGG | + | chr7.1:6028582-6028601 | MS.gene051917:CDS | 45.0% | |
| CTCGCACCTTTCTTGTCTTA+AGG | - | chr7.1:6028397-6028416 | None:intergenic | 45.0% | |
| CTGCGAATATGTTTGAGGGA+TGG | + | chr7.1:6027549-6027568 | MS.gene051917:CDS | 45.0% | |
| GAAGTCGCAAGTTTAGGGAA+TGG | + | chr7.1:6028339-6028358 | MS.gene051917:CDS | 45.0% | |
| GCTGGCACTCAATAAGTGAA+GGG | - | chr7.1:6028313-6028332 | None:intergenic | 45.0% | |
| GGATCTTCAAACTTTCTGGG+AGG | + | chr7.1:6028439-6028458 | MS.gene051917:CDS | 45.0% | |
| GGTAGCTCAAGAGTTGGAAT+TGG | + | chr7.1:6028577-6028596 | MS.gene051917:CDS | 45.0% | |
| GGTGCGAGATATGAATGACT+TGG | + | chr7.1:6028409-6028428 | MS.gene051917:CDS | 45.0% | |
| GTAACTTAACCGCTTCCCTA+AGG | + | chr7.1:6028174-6028193 | MS.gene051917:CDS | 45.0% | |
| TGATGCTGCAAGAGACTTGT+TGG | + | chr7.1:6028640-6028659 | MS.gene051917:CDS | 45.0% | |
| TGCTGGCACTCAATAAGTGA+AGG | - | chr7.1:6028314-6028333 | None:intergenic | 45.0% | |
| TTCTATGTGTCCCATACCCT+TGG | - | chr7.1:6028249-6028268 | None:intergenic | 45.0% | |
| ! | ACTTGCGACTTCTTTTCTGC+TGG | - | chr7.1:6028331-6028350 | None:intergenic | 45.0% |
| ! | CCTAGTGTTCAATCGGCTTT+AGG | + | chr7.1:6028500-6028519 | MS.gene051917:CDS | 45.0% |
| ! | CTCATGGATTCCAAGGGTAT+GGG | + | chr7.1:6028236-6028255 | MS.gene051917:CDS | 45.0% |
| !! | CTTCTTCTAGCTTTGGCCTT+AGG | - | chr7.1:6028193-6028212 | None:intergenic | 45.0% |
| !! | GCTCACTTACATTTTGGCCT+TGG | - | chr7.1:6028217-6028236 | None:intergenic | 45.0% |
| CCAAAGCTAGAAGAAGGCCA+AGG | + | chr7.1:6028197-6028216 | MS.gene051917:CDS | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | + | chr7.1:6028356-6028375 | MS.gene051917:CDS | 50.0% | |
| GCTCATGGATTCCAAGGGTA+TGG | + | chr7.1:6028235-6028254 | MS.gene051917:CDS | 50.0% | |
| TCTAAAGGTGGGAGGAACAC+AGG | + | chr7.1:6027488-6027507 | MS.gene051917:CDS | 50.0% | |
| ! | TACTCCGAGCCTTTTGTCCT+AGG | + | chr7.1:6027318-6027337 | MS.gene051917:CDS | 50.0% |
| !! | CCTTGGCCTTCTTCTAGCTT+TGG | - | chr7.1:6028200-6028219 | None:intergenic | 50.0% |
| !! | TAGCTTTGGCCTTAGGGAAG+CGG | - | chr7.1:6028186-6028205 | None:intergenic | 50.0% |
| !! | TGCTGCAAGAGACTTGTTGG+AGG | + | chr7.1:6028643-6028662 | MS.gene051917:CDS | 50.0% |
| CATACCATGGATAGCCGCCT+AGG | - | chr7.1:6027338-6027357 | None:intergenic | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | + | chr7.1:6028355-6028374 | MS.gene051917:CDS | 55.0% | |
| GGATAGCCGCCTAGGACAAA+AGG | - | chr7.1:6027330-6027349 | None:intergenic | 55.0% | |
| TTGTCCTAGGCGGCTATCCA+TGG | + | chr7.1:6027331-6027350 | MS.gene051917:CDS | 55.0% | |
| ! | TCCGAGCCTTTTGTCCTAGG+CGG | + | chr7.1:6027321-6027340 | MS.gene051917:CDS | 55.0% |
| GCCGCCTAGGACAAAAGGCT+CGG | - | chr7.1:6027325-6027344 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6027171 | 6028721 | 6027171 | ID=MS.gene051917 |
| chr7.1 | mRNA | 6027171 | 6028721 | 6027171 | ID=MS.gene051917.t1;Parent=MS.gene051917 |
| chr7.1 | exon | 6027171 | 6027352 | 6027171 | ID=MS.gene051917.t1.exon1;Parent=MS.gene051917.t1 |
| chr7.1 | CDS | 6027171 | 6027352 | 6027171 | ID=cds.MS.gene051917.t1;Parent=MS.gene051917.t1 |
| chr7.1 | exon | 6027475 | 6027638 | 6027475 | ID=MS.gene051917.t1.exon2;Parent=MS.gene051917.t1 |
| chr7.1 | CDS | 6027475 | 6027638 | 6027475 | ID=cds.MS.gene051917.t1;Parent=MS.gene051917.t1 |
| chr7.1 | exon | 6028003 | 6028721 | 6028003 | ID=MS.gene051917.t1.exon3;Parent=MS.gene051917.t1 |
| chr7.1 | CDS | 6028003 | 6028721 | 6028003 | ID=cds.MS.gene051917.t1;Parent=MS.gene051917.t1 |
| Gene Sequence |
| Protein sequence |
