Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80844.t1 | RHN52802.1 | 90.4 | 530 | 37 | 5 | 1 | 520 | 1 | 526 | 1.00E-238 | 835.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80844.t1 | A0A396HHI6 | 90.4 | 530 | 37 | 5 | 1 | 520 | 1 | 526 | 7.5e-239 | 835.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80844 | 0.823586 | 1.28E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene80844 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene80844 | 0.849483 | 3.14E-60 | -1.69E-46 |
| MS.gene049350 | MS.gene80844 | 0.803822 | 2.90E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene80844 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene80844 | 0.824633 | 7.26E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene80844 | 0.811052 | 8.49E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene80844 | 0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene051018 | MS.gene80844 | 0.806706 | 7.22E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene80844 | 0.807776 | 4.29E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene80844 | 0.825844 | 3.76E-54 | -1.69E-46 |
| MS.gene051332 | MS.gene80844 | 0.818059 | 2.39E-52 | -1.69E-46 |
| MS.gene051594 | MS.gene80844 | 0.80162 | 8.26E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene80844 | 0.805032 | 1.62E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene80844 | 0.816529 | 5.28E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene80844 | 0.839393 | 1.63E-57 | -1.69E-46 |
| MS.gene05191 | MS.gene80844 | 0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene80844 | 0.829505 | 4.96E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene80844 | 0.8009 | 1.16E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene80844 | 0.834495 | 2.90E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene80844 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene80844 | 0.828504 | 8.67E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene80844 | 0.811435 | 7.01E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene80844 | 0.804568 | 2.03E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene80844 | 0.851868 | 6.70E-61 | -1.69E-46 |
| MS.gene053272 | MS.gene80844 | -0.821426 | 4.06E-53 | -1.69E-46 |
| MS.gene053296 | MS.gene80844 | 0.800344 | 1.51E-48 | -1.69E-46 |
| MS.gene053592 | MS.gene80844 | 0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene80844 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene05422 | MS.gene80844 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene80844 | 0.844684 | 6.49E-59 | -1.69E-46 |
| MS.gene05458 | MS.gene80844 | 0.843856 | 1.08E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene80844 | 0.856873 | 2.40E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene80844 | 0.840375 | 9.03E-58 | -1.69E-46 |
| MS.gene054991 | MS.gene80844 | 0.828985 | 6.63E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene80844 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene80844 | 0.829456 | 5.10E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene80844 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene80844 | 0.82361 | 1.26E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene80844 | 0.853361 | 2.51E-61 | -1.69E-46 |
| MS.gene056215 | MS.gene80844 | 0.805213 | 1.49E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene80844 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene80844 | 0.81296 | 3.26E-51 | -1.69E-46 |
| MS.gene056854 | MS.gene80844 | 0.822339 | 2.50E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene80844 | 0.854106 | 1.54E-61 | -1.69E-46 |
| MS.gene05690 | MS.gene80844 | 0.837847 | 4.08E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene80844 | 0.807314 | 5.37E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene80844 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene80844 | 0.81671 | 4.81E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene80844 | 0.824991 | 5.98E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene80844 | 0.813865 | 2.06E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene80844 | 0.817465 | 3.25E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene80844 | 0.807286 | 5.45E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene80844 | 0.834467 | 2.95E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene80844 | 0.802008 | 6.88E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene80844 | 0.831206 | 1.90E-55 | -1.69E-46 |
| MS.gene058974 | MS.gene80844 | 0.807399 | 5.15E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene80844 | 0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene80844 | 0.813536 | 2.44E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene80844 | 0.822395 | 2.42E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene80844 | 0.808845 | 2.54E-50 | -1.69E-46 |
| MS.gene059460 | MS.gene80844 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene80844 | 0.864038 | 1.62E-64 | -1.69E-46 |
| MS.gene059842 | MS.gene80844 | 0.813197 | 2.89E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene80844 | -0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene060258 | MS.gene80844 | 0.83561 | 1.52E-56 | -1.69E-46 |
| MS.gene060519 | MS.gene80844 | 0.810988 | 8.77E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene80844 | 0.802587 | 5.23E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene80844 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene80844 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene80844 | 0.831724 | 1.42E-55 | -1.69E-46 |
| MS.gene061160 | MS.gene80844 | 0.804044 | 2.61E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene80844 | 0.833193 | 6.14E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80844.t1 | MTR_6g084440 | 93.666 | 521 | 19 | 5 | 1 | 511 | 1 | 517 | 0.0 | 855 |
| MS.gene80844.t1 | MTR_6g084440 | 93.282 | 521 | 19 | 6 | 1 | 511 | 1 | 515 | 0.0 | 847 |
| MS.gene80844.t1 | MTR_8g104270 | 54.049 | 531 | 180 | 13 | 1 | 517 | 1 | 481 | 1.71e-161 | 470 |
| MS.gene80844.t1 | MTR_4g005350 | 41.346 | 208 | 105 | 6 | 294 | 486 | 115 | 320 | 2.53e-36 | 140 |
| MS.gene80844.t1 | MTR_7g010160 | 29.365 | 252 | 149 | 8 | 285 | 514 | 412 | 656 | 8.48e-19 | 90.5 |
| MS.gene80844.t1 | MTR_5g040600 | 28.755 | 233 | 133 | 8 | 299 | 511 | 597 | 816 | 1.35e-18 | 90.1 |
| MS.gene80844.t1 | MTR_8g467380 | 34.848 | 132 | 79 | 3 | 359 | 485 | 587 | 716 | 2.59e-12 | 70.1 |
| MS.gene80844.t1 | MTR_8g467390 | 26.047 | 215 | 130 | 7 | 295 | 485 | 126 | 335 | 4.17e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80844.t1 | AT1G73850 | 45.246 | 568 | 232 | 18 | 1 | 511 | 1 | 546 | 1.96e-124 | 378 |
| MS.gene80844.t1 | AT1G73850 | 45.246 | 568 | 232 | 18 | 1 | 511 | 1 | 546 | 1.96e-124 | 378 |
| MS.gene80844.t1 | AT3G20260 | 40.566 | 212 | 106 | 7 | 294 | 487 | 117 | 326 | 1.49e-31 | 127 |
| MS.gene80844.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 359 | 484 | 349 | 481 | 5.21e-17 | 84.7 |
| MS.gene80844.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 359 | 484 | 349 | 481 | 5.39e-17 | 84.7 |
| MS.gene80844.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 359 | 484 | 349 | 481 | 5.39e-17 | 84.7 |
| MS.gene80844.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 359 | 484 | 349 | 481 | 5.39e-17 | 84.7 |
| MS.gene80844.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 359 | 484 | 349 | 481 | 6.37e-17 | 84.3 |
| MS.gene80844.t1 | AT1G69610 | 28.780 | 205 | 130 | 6 | 295 | 485 | 270 | 472 | 6.48e-15 | 77.8 |
| MS.gene80844.t1 | AT1G69610 | 28.780 | 205 | 130 | 6 | 295 | 485 | 314 | 516 | 9.09e-15 | 77.8 |
| MS.gene80844.t1 | AT1G69610 | 28.780 | 205 | 130 | 6 | 295 | 485 | 315 | 517 | 9.52e-15 | 77.4 |
Find 66 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCGTAAGATTCCCATTT+TGG | 0.147178 | 6.2:-82888299 | None:intergenic |
| TCAATTATTTGTAGAGATTC+TGG | 0.189000 | 6.2:+82888245 | MS.gene80844:CDS |
| TAACATGGGAAGCACTTAAT+TGG | 0.198782 | 6.2:+82889207 | MS.gene80844:CDS |
| GAGAATGAACCTTATGAATT+TGG | 0.221238 | 6.2:+82889338 | MS.gene80844:CDS |
| TCAGGGACTAGGAGCAATTT+TGG | 0.222327 | 6.2:-82889401 | None:intergenic |
| TGGAAGGTACCTCGGTATTC+AGG | 0.253654 | 6.2:-82889419 | None:intergenic |
| CAAGAAGAAGCTGTCCAAAA+TGG | 0.263538 | 6.2:+82888285 | MS.gene80844:CDS |
| TTAGTAGCTGATATAGTTTA+TGG | 0.270943 | 6.2:+82887260 | MS.gene80844:CDS |
| AGCTTCATTTCTTGTGATAA+TGG | 0.291025 | 6.2:+82889714 | MS.gene80844:CDS |
| GATGATCAGAAGGAGAATAT+TGG | 0.307291 | 6.2:+82889670 | MS.gene80844:CDS |
| CACTATTGGTTCAACATCTA+AGG | 0.318019 | 6.2:+82888202 | MS.gene80844:CDS |
| GTAGCTCCAAGGTCAATTTC+AGG | 0.324497 | 6.2:+82889083 | MS.gene80844:CDS |
| GCACCCTCTAATTCACAATA+TGG | 0.341978 | 6.2:-82889164 | None:intergenic |
| ATGATCAGAAGGAGAATATT+GGG | 0.345161 | 6.2:+82889671 | MS.gene80844:CDS |
| GGATTGTGACTTATATCTTC+TGG | 0.349354 | 6.2:-82889143 | None:intergenic |
| AACTGTTGCGCAATTGTTGC+TGG | 0.354425 | 6.2:-82889281 | None:intergenic |
| ATCAACATTTGAAGCTCGTT+TGG | 0.363092 | 6.2:-82889249 | None:intergenic |
| GCACAAAAGCTTCATGAAAC+TGG | 0.382594 | 6.2:+82888368 | MS.gene80844:CDS |
| AAAGATGATGAAGAAATATA+TGG | 0.394408 | 6.2:+82888170 | MS.gene80844:CDS |
| AGTAGCTACTAATGAAGTTA+AGG | 0.396569 | 6.2:-82887025 | None:intergenic |
| TGTCATTGGTCCTACACAAT+TGG | 0.408052 | 6.2:+82888118 | MS.gene80844:CDS |
| TACAAACTTTCAGTTGAAGT+TGG | 0.409551 | 6.2:-82887419 | None:intergenic |
| TATGGTGATACAACCACTAT+TGG | 0.409872 | 6.2:+82888188 | MS.gene80844:CDS |
| AAGAAATGTCATTTCTAGAA+AGG | 0.415445 | 6.2:+82888339 | MS.gene80844:CDS |
| GTCTCAAAATCTGAAACAAT+TGG | 0.415879 | 6.2:-82887458 | None:intergenic |
| TTGTATAGGTTAACTGTGAT+AGG | 0.416462 | 6.2:-82887569 | None:intergenic |
| CTTAGATGTTGAACCAATAG+TGG | 0.428171 | 6.2:-82888201 | None:intergenic |
| TTGAAGTAGAAAAGAGAAAG+AGG | 0.433188 | 6.2:-82886986 | None:intergenic |
| TTTAAAAGACGGATTAATGT+TGG | 0.441489 | 6.2:-82889841 | None:intergenic |
| TTTAAAGAAAGTTAATCAAA+AGG | 0.445739 | 6.2:+82889858 | MS.gene80844:CDS |
| TTTCTTGTGATAATGGAAGA+TGG | 0.449843 | 6.2:+82889721 | MS.gene80844:CDS |
| ATTCTATTCCAATTGAAAAG+AGG | 0.460919 | 6.2:+82887534 | MS.gene80844:CDS |
| AAGAAGAAGCTGTCCAAAAT+GGG | 0.470485 | 6.2:+82888286 | MS.gene80844:CDS |
| CTCATTCTAGCATAAATCTC+TGG | 0.472752 | 6.2:-82889368 | None:intergenic |
| TTATTTCTCTCCAATTGTGT+AGG | 0.473744 | 6.2:-82888128 | None:intergenic |
| CATCTAAGGACTCTTCTGAT+TGG | 0.477906 | 6.2:+82888216 | MS.gene80844:CDS |
| CAATCCATATTGTGAATTAG+AGG | 0.497184 | 6.2:+82889160 | MS.gene80844:CDS |
| TTGCACAAATTTGCTTAACA+TGG | 0.498853 | 6.2:+82889192 | MS.gene80844:CDS |
| GGAAGGTACCTCGGTATTCA+GGG | 0.510315 | 6.2:-82889418 | None:intergenic |
| TTATGCTAGAATGAGGCATA+TGG | 0.512293 | 6.2:+82889376 | MS.gene80844:CDS |
| GGTCTCCTACCAAATTCATA+AGG | 0.517370 | 6.2:-82889347 | None:intergenic |
| GATTAACTTTCTTTAAAAGA+CGG | 0.520863 | 6.2:-82889852 | None:intergenic |
| ATTCTCCCTGAAATTGACCT+TGG | 0.525426 | 6.2:-82889089 | None:intergenic |
| GTAGCTACTCTTTATTCCAA+AGG | 0.527051 | 6.2:+82887039 | MS.gene80844:CDS |
| TCGTAGAAATCAAAGAGGCT+TGG | 0.527566 | 6.2:+82889813 | MS.gene80844:CDS |
| CGAGCTTCAAATGTTGATGT+TGG | 0.530856 | 6.2:+82889254 | MS.gene80844:CDS |
| TAGCTCCAAGGTCAATTTCA+GGG | 0.532390 | 6.2:+82889084 | MS.gene80844:CDS |
| GTAGCTGATATAGTTTATGG+TGG | 0.535251 | 6.2:+82887263 | MS.gene80844:CDS |
| ATGAACCTTATGAATTTGGT+AGG | 0.537040 | 6.2:+82889342 | MS.gene80844:CDS |
| AGAATCAGATGATGATCAGA+AGG | 0.565291 | 6.2:+82889660 | MS.gene80844:intron |
| ATAGTAACAATAAGTCTCAA+AGG | 0.565342 | 6.2:+82887306 | MS.gene80844:CDS |
| CAGAGATTTATGCTAGAATG+AGG | 0.571884 | 6.2:+82889369 | MS.gene80844:CDS |
| AATCCATATTGTGAATTAGA+GGG | 0.576076 | 6.2:+82889161 | MS.gene80844:CDS |
| AGAGCTTCTTCTTTAGAACA+TGG | 0.576720 | 6.2:-82886918 | None:intergenic |
| AACATTCATGAATTTCCTCA+AGG | 0.579977 | 6.2:+82889750 | MS.gene80844:CDS |
| AACTGTGATAGGAGGAGAAG+TGG | 0.582918 | 6.2:-82887558 | None:intergenic |
| TGCACAAATTTGCTTAACAT+GGG | 0.586140 | 6.2:+82889193 | MS.gene80844:CDS |
| TACCTCGGTATTCAGGGACT+AGG | 0.587192 | 6.2:-82889412 | None:intergenic |
| GTTTCTCTTTATCAGCCTTG+AGG | 0.587313 | 6.2:-82889765 | None:intergenic |
| TATAGGTTAACTGTGATAGG+AGG | 0.592053 | 6.2:-82887566 | None:intergenic |
| TTCTACGAAAGTAAGATGCA+AGG | 0.609967 | 6.2:-82889798 | None:intergenic |
| TACTTTCGTAGAAATCAAAG+AGG | 0.610424 | 6.2:+82889808 | MS.gene80844:CDS |
| GATCTATCAAAGTAGCTCCA+AGG | 0.637964 | 6.2:+82889072 | MS.gene80844:CDS |
| TAAGATGCAAGGATCTGACA+TGG | 0.678566 | 6.2:-82889787 | None:intergenic |
| TCTTCAATGAAGCTATCTCG+AGG | 0.682772 | 6.2:-82887374 | None:intergenic |
| CTCCTAGTCCCTGAATACCG+AGG | 0.723246 | 6.2:+82889410 | MS.gene80844:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATTAGTTATTATTA+AGG | + | chr6.2:82888950-82888969 | MS.gene80844:intron | 10.0% |
| !! | AAATATCAGAAAATTAAGAA+AGG | - | chr6.2:82888405-82888424 | None:intergenic | 15.0% |
| !! | GAAGAAATAATATTATAATG+TGG | - | chr6.2:82888752-82888771 | None:intergenic | 15.0% |
| !! | TCTTCAAATATATTTGTATT+TGG | + | chr6.2:82888767-82888786 | MS.gene80844:intron | 15.0% |
| !! | TTTAAAGAAAGTTAATCAAA+AGG | + | chr6.2:82889858-82889877 | MS.gene80844:CDS | 15.0% |
| !!! | TATCATATTTTAATAGAAGT+TGG | - | chr6.2:82889442-82889461 | None:intergenic | 15.0% |
| !! | AAAAATTGTAACTAAGTAGT+TGG | + | chr6.2:82888863-82888882 | MS.gene80844:intron | 20.0% |
| !! | AAAGATGATGAAGAAATATA+TGG | + | chr6.2:82888170-82888189 | MS.gene80844:CDS | 20.0% |
| !! | GCAGAAAAATATATTGATAT+TGG | + | chr6.2:82888038-82888057 | MS.gene80844:intron | 20.0% |
| !!! | ATATTTTAATAGAAGTTGGA+AGG | - | chr6.2:82889438-82889457 | None:intergenic | 20.0% |
| !!! | ATGTGTCAATTTTATTTATG+TGG | + | chr6.2:82887803-82887822 | MS.gene80844:intron | 20.0% |
| !!! | GATTAACTTTCTTTAAAAGA+CGG | - | chr6.2:82889855-82889874 | None:intergenic | 20.0% |
| !!! | TGATTTGACATAATTGTTTT+TGG | + | chr6.2:82887905-82887924 | MS.gene80844:intron | 20.0% |
| ! | AATCCATATTGTGAATTAGA+GGG | + | chr6.2:82889161-82889180 | MS.gene80844:CDS | 25.0% |
| ! | AATTAATAAGCCAAATCTCT+CGG | + | chr6.2:82888434-82888453 | MS.gene80844:intron | 25.0% |
| ! | ATAGTAACAATAAGTCTCAA+AGG | + | chr6.2:82887306-82887325 | MS.gene80844:CDS | 25.0% |
| ! | ATTCTATTCCAATTGAAAAG+AGG | + | chr6.2:82887534-82887553 | MS.gene80844:CDS | 25.0% |
| ! | CTAACGTTCAAGATATATTA+TGG | + | chr6.2:82888497-82888516 | MS.gene80844:intron | 25.0% |
| ! | GTAGCAATAATAATAACCTT+TGG | - | chr6.2:82887058-82887077 | None:intergenic | 25.0% |
| ! | TCAATAATAGAGAATTTGAC+CGG | - | chr6.2:82888471-82888490 | None:intergenic | 25.0% |
| ! | TCAATTATTTGTAGAGATTC+TGG | + | chr6.2:82888245-82888264 | MS.gene80844:CDS | 25.0% |
| ! | TTAGTAGCTGATATAGTTTA+TGG | + | chr6.2:82887260-82887279 | MS.gene80844:CDS | 25.0% |
| !! | AAGAAATGTCATTTCTAGAA+AGG | + | chr6.2:82888339-82888358 | MS.gene80844:CDS | 25.0% |
| !!! | TTTAAAAGACGGATTAATGT+TGG | - | chr6.2:82889844-82889863 | None:intergenic | 25.0% |
| AACATTCATGAATTTCCTCA+AGG | + | chr6.2:82889750-82889769 | MS.gene80844:CDS | 30.0% | |
| AATGAGAAAAGAAACTAGAG+AGG | - | chr6.2:82887085-82887104 | None:intergenic | 30.0% | |
| AGCTTCATTTCTTGTGATAA+TGG | + | chr6.2:82889714-82889733 | MS.gene80844:CDS | 30.0% | |
| AGTAGCTACTAATGAAGTTA+AGG | - | chr6.2:82887028-82887047 | None:intergenic | 30.0% | |
| AGTGTTTCATAGATGCTAAA+TGG | + | chr6.2:82888000-82888019 | MS.gene80844:intron | 30.0% | |
| ATGAACCTTATGAATTTGGT+AGG | + | chr6.2:82889342-82889361 | MS.gene80844:CDS | 30.0% | |
| ATGATCAGAAGGAGAATATT+GGG | + | chr6.2:82889671-82889690 | MS.gene80844:CDS | 30.0% | |
| ATTAATAAGCCAAATCTCTC+GGG | + | chr6.2:82888435-82888454 | MS.gene80844:intron | 30.0% | |
| CAATCCATATTGTGAATTAG+AGG | + | chr6.2:82889160-82889179 | MS.gene80844:CDS | 30.0% | |
| GAGAATGAACCTTATGAATT+TGG | + | chr6.2:82889338-82889357 | MS.gene80844:CDS | 30.0% | |
| GTTTGTGTATGTACTTGTAT+CGG | + | chr6.2:82887855-82887874 | MS.gene80844:intron | 30.0% | |
| TACAAACTTTCAGTTGAAGT+TGG | - | chr6.2:82887422-82887441 | None:intergenic | 30.0% | |
| TACTTTCGTAGAAATCAAAG+AGG | + | chr6.2:82889808-82889827 | MS.gene80844:CDS | 30.0% | |
| TTATTCACATGCATCACTTA+CGG | + | chr6.2:82887663-82887682 | MS.gene80844:intron | 30.0% | |
| TTGAAGTAGAAAAGAGAAAG+AGG | - | chr6.2:82886989-82887008 | None:intergenic | 30.0% | |
| TTGTATAGGTTAACTGTGAT+AGG | - | chr6.2:82887572-82887591 | None:intergenic | 30.0% | |
| ! | GTCTCAAAATCTGAAACAAT+TGG | - | chr6.2:82887461-82887480 | None:intergenic | 30.0% |
| ! | TGCACAAATTTGCTTAACAT+GGG | + | chr6.2:82889193-82889212 | MS.gene80844:CDS | 30.0% |
| ! | TTATTTCTCTCCAATTGTGT+AGG | - | chr6.2:82888131-82888150 | None:intergenic | 30.0% |
| ! | TTGCACAAATTTGCTTAACA+TGG | + | chr6.2:82889192-82889211 | MS.gene80844:CDS | 30.0% |
| !! | CTAAGTCATCACTTTTGTAT+AGG | - | chr6.2:82887586-82887605 | None:intergenic | 30.0% |
| !! | TTTCTTGTGATAATGGAAGA+TGG | + | chr6.2:82889721-82889740 | MS.gene80844:CDS | 30.0% |
| AAGAAGAAGCTGTCCAAAAT+GGG | + | chr6.2:82888286-82888305 | MS.gene80844:CDS | 35.0% | |
| ACTTAAGAACGAAACTTCAG+GGG | + | chr6.2:82888908-82888927 | MS.gene80844:intron | 35.0% | |
| AGAATCAGATGATGATCAGA+AGG | + | chr6.2:82889660-82889679 | MS.gene80844:intron | 35.0% | |
| CACTTAAGAACGAAACTTCA+GGG | + | chr6.2:82888907-82888926 | MS.gene80844:intron | 35.0% | |
| CAGAGATTTATGCTAGAATG+AGG | + | chr6.2:82889369-82889388 | MS.gene80844:CDS | 35.0% | |
| CTCATTCTAGCATAAATCTC+TGG | - | chr6.2:82889371-82889390 | None:intergenic | 35.0% | |
| CTTAGATGTTGAACCAATAG+TGG | - | chr6.2:82888204-82888223 | None:intergenic | 35.0% | |
| GAGAGTGACAAAAACTATGA+TGG | + | chr6.2:82887608-82887627 | MS.gene80844:CDS | 35.0% | |
| GATGATCAGAAGGAGAATAT+TGG | + | chr6.2:82889670-82889689 | MS.gene80844:CDS | 35.0% | |
| GGATTGTGACTTATATCTTC+TGG | - | chr6.2:82889146-82889165 | None:intergenic | 35.0% | |
| GTAGCTACTCTTTATTCCAA+AGG | + | chr6.2:82887039-82887058 | MS.gene80844:CDS | 35.0% | |
| GTAGCTGATATAGTTTATGG+TGG | + | chr6.2:82887263-82887282 | MS.gene80844:CDS | 35.0% | |
| GTATCTGTGTTTCATTGTCT+CGG | + | chr6.2:82887954-82887973 | MS.gene80844:intron | 35.0% | |
| TATAGGTTAACTGTGATAGG+AGG | - | chr6.2:82887569-82887588 | None:intergenic | 35.0% | |
| TATGGTGATACAACCACTAT+TGG | + | chr6.2:82888188-82888207 | MS.gene80844:CDS | 35.0% | |
| TCACTTAAGAACGAAACTTC+AGG | + | chr6.2:82888906-82888925 | MS.gene80844:intron | 35.0% | |
| TTAATAAGCCAAATCTCTCG+GGG | + | chr6.2:82888436-82888455 | MS.gene80844:intron | 35.0% | |
| TTATGCTAGAATGAGGCATA+TGG | + | chr6.2:82889376-82889395 | MS.gene80844:CDS | 35.0% | |
| TTCAACAACCGAAGTTTCAT+TGG | - | chr6.2:82888650-82888669 | None:intergenic | 35.0% | |
| TTCTACGAAAGTAAGATGCA+AGG | - | chr6.2:82889801-82889820 | None:intergenic | 35.0% | |
| TTGTCTCTCCAATGAAACTT+CGG | + | chr6.2:82888639-82888658 | MS.gene80844:intron | 35.0% | |
| ! | ATCAACATTTGAAGCTCGTT+TGG | - | chr6.2:82889252-82889271 | None:intergenic | 35.0% |
| ! | TGTCGACAAGTTGAACATTA+TGG | - | chr6.2:82888605-82888624 | None:intergenic | 35.0% |
| ! | TTAATCCAACGACTGAGTTT+TGG | + | chr6.2:82888527-82888546 | MS.gene80844:intron | 35.0% |
| !! | AGAGCTTCTTCTTTAGAACA+TGG | - | chr6.2:82886921-82886940 | None:intergenic | 35.0% |
| !! | CACTATTGGTTCAACATCTA+AGG | + | chr6.2:82888202-82888221 | MS.gene80844:CDS | 35.0% |
| !! | TAACATGGGAAGCACTTAAT+TGG | + | chr6.2:82889207-82889226 | MS.gene80844:CDS | 35.0% |
| !!! | GATGAGAGTGTTTTTGTCAT+TGG | + | chr6.2:82888104-82888123 | MS.gene80844:CDS | 35.0% |
| !!! | TTGAGAGTGTTTTATCTCGA+CGG | + | chr6.2:82888682-82888701 | MS.gene80844:intron | 35.0% |
| ATTCTCCCTGAAATTGACCT+TGG | - | chr6.2:82889092-82889111 | None:intergenic | 40.0% | |
| CAAGAAGAAGCTGTCCAAAA+TGG | + | chr6.2:82888285-82888304 | MS.gene80844:CDS | 40.0% | |
| CATCTAAGGACTCTTCTGAT+TGG | + | chr6.2:82888216-82888235 | MS.gene80844:CDS | 40.0% | |
| CGAGCTTCAAATGTTGATGT+TGG | + | chr6.2:82889254-82889273 | MS.gene80844:CDS | 40.0% | |
| GATCTATCAAAGTAGCTCCA+AGG | + | chr6.2:82889072-82889091 | MS.gene80844:CDS | 40.0% | |
| GCACAAAAGCTTCATGAAAC+TGG | + | chr6.2:82888368-82888387 | MS.gene80844:CDS | 40.0% | |
| GCACCCTCTAATTCACAATA+TGG | - | chr6.2:82889167-82889186 | None:intergenic | 40.0% | |
| GGTCTCCTACCAAATTCATA+AGG | - | chr6.2:82889350-82889369 | None:intergenic | 40.0% | |
| GTTTCTCTTTATCAGCCTTG+AGG | - | chr6.2:82889768-82889787 | None:intergenic | 40.0% | |
| TAAGATGCAAGGATCTGACA+TGG | - | chr6.2:82889790-82889809 | None:intergenic | 40.0% | |
| TAGCTCCAAGGTCAATTTCA+GGG | + | chr6.2:82889084-82889103 | MS.gene80844:CDS | 40.0% | |
| TCGTAGAAATCAAAGAGGCT+TGG | + | chr6.2:82889813-82889832 | MS.gene80844:CDS | 40.0% | |
| TCTTCAATGAAGCTATCTCG+AGG | - | chr6.2:82887377-82887396 | None:intergenic | 40.0% | |
| TGTCATTGGTCCTACACAAT+TGG | + | chr6.2:82888118-82888137 | MS.gene80844:CDS | 40.0% | |
| ! | ACTGCGTAAGATTCCCATTT+TGG | - | chr6.2:82888302-82888321 | None:intergenic | 40.0% |
| ! | GAAGTGGTCCTCTTTTCAAT+TGG | - | chr6.2:82887545-82887564 | None:intergenic | 40.0% |
| !! | ATAGAAGTTGGAAGGTACCT+CGG | - | chr6.2:82889430-82889449 | None:intergenic | 40.0% |
| AACTGTGATAGGAGGAGAAG+TGG | - | chr6.2:82887561-82887580 | None:intergenic | 45.0% | |
| AACTGTTGCGCAATTGTTGC+TGG | - | chr6.2:82889284-82889303 | None:intergenic | 45.0% | |
| GAGAATTTGACCGGAGATTG+AGG | - | chr6.2:82888462-82888481 | None:intergenic | 45.0% | |
| GTAGCTCCAAGGTCAATTTC+AGG | + | chr6.2:82889083-82889102 | MS.gene80844:CDS | 45.0% | |
| TATTGCCTCTCCAGTTTCTC+CGG | - | chr6.2:82888553-82888572 | None:intergenic | 45.0% | |
| ! | GAGTGTTTTATCTCGACGGT+TGG | + | chr6.2:82888686-82888705 | MS.gene80844:intron | 45.0% |
| ! | TCAGGGACTAGGAGCAATTT+TGG | - | chr6.2:82889404-82889423 | None:intergenic | 45.0% |
| !! | ACTAAGTAGTTGGCTTGAGC+TGG | + | chr6.2:82888873-82888892 | MS.gene80844:intron | 45.0% |
| !!! | ATTTTTTAATTTTTTATTCA+TGG | + | chr6.2:82889538-82889557 | MS.gene80844:intron | 5.0% |
| TACCTCGGTATTCAGGGACT+AGG | - | chr6.2:82889415-82889434 | None:intergenic | 50.0% | |
| !! | GGAAGGTACCTCGGTATTCA+GGG | - | chr6.2:82889421-82889440 | None:intergenic | 50.0% |
| !! | TCCAACGACTGAGTTTTGGC+CGG | + | chr6.2:82888531-82888550 | MS.gene80844:intron | 50.0% |
| !! | TGAGTTTTGGCCGGAGAAAC+TGG | + | chr6.2:82888540-82888559 | MS.gene80844:intron | 50.0% |
| !! | TGGAAGGTACCTCGGTATTC+AGG | - | chr6.2:82889422-82889441 | None:intergenic | 50.0% |
| CTCCTAGTCCCTGAATACCG+AGG | + | chr6.2:82889410-82889429 | MS.gene80844:CDS | 55.0% | |
| GATTGAGGCCCCGAGAGATT+TGG | - | chr6.2:82888447-82888466 | None:intergenic | 55.0% | |
| TCCGGCCAAAACTCAGTCGT+TGG | - | chr6.2:82888535-82888554 | None:intergenic | 55.0% | |
| TTTGGCCGGAGAAACTGGAG+AGG | + | chr6.2:82888545-82888564 | MS.gene80844:intron | 55.0% | |
| TCTCTCGGGGCCTCAATCTC+CGG | + | chr6.2:82888449-82888468 | MS.gene80844:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 82886915 | 82889891 | 82886915 | ID=MS.gene80844 |
| chr6.2 | mRNA | 82886915 | 82889891 | 82886915 | ID=MS.gene80844.t1;Parent=MS.gene80844 |
| chr6.2 | exon | 82886915 | 82887060 | 82886915 | ID=MS.gene80844.t1.exon1;Parent=MS.gene80844.t1 |
| chr6.2 | CDS | 82886915 | 82887060 | 82886915 | ID=cds.MS.gene80844.t1;Parent=MS.gene80844.t1 |
| chr6.2 | exon | 82887160 | 82887629 | 82887160 | ID=MS.gene80844.t1.exon2;Parent=MS.gene80844.t1 |
| chr6.2 | CDS | 82887160 | 82887629 | 82887160 | ID=cds.MS.gene80844.t1;Parent=MS.gene80844.t1 |
| chr6.2 | exon | 82888042 | 82888389 | 82888042 | ID=MS.gene80844.t1.exon3;Parent=MS.gene80844.t1 |
| chr6.2 | CDS | 82888042 | 82888389 | 82888042 | ID=cds.MS.gene80844.t1;Parent=MS.gene80844.t1 |
| chr6.2 | exon | 82889063 | 82889431 | 82889063 | ID=MS.gene80844.t1.exon4;Parent=MS.gene80844.t1 |
| chr6.2 | CDS | 82889063 | 82889431 | 82889063 | ID=cds.MS.gene80844.t1;Parent=MS.gene80844.t1 |
| chr6.2 | exon | 82889662 | 82889891 | 82889662 | ID=MS.gene80844.t1.exon5;Parent=MS.gene80844.t1 |
| chr6.2 | CDS | 82889662 | 82889891 | 82889662 | ID=cds.MS.gene80844.t1;Parent=MS.gene80844.t1 |
| Gene Sequence |
| Protein sequence |
