Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91310.t1 | XP_024626745.1 | 85 | 213 | 32 | 0 | 5 | 217 | 58 | 270 | 1.40E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91310.t1 | I3SPL3 | 83.4 | 205 | 34 | 0 | 13 | 217 | 57 | 261 | 1.1e-66 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene91310 | 0.803357 | 3.62E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene91310 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene91310 | 0.841613 | 4.27E-58 | -1.69E-46 |
| MS.gene049825 | MS.gene91310 | 0.852634 | 4.06E-61 | -1.69E-46 |
| MS.gene049850 | MS.gene91310 | 0.814145 | 1.79E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene91310 | 0.834235 | 3.37E-56 | -1.69E-46 |
| MS.gene050201 | MS.gene91310 | 0.822467 | 2.33E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene91310 | 0.808094 | 3.67E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene91310 | 0.806746 | 7.08E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene91310 | 0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene91310 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene051207 | MS.gene91310 | 0.801523 | 8.65E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene91310 | 0.829948 | 3.87E-55 | -1.69E-46 |
| MS.gene051574 | MS.gene91310 | 0.811342 | 7.34E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene91310 | 0.840092 | 1.07E-57 | -1.69E-46 |
| MS.gene051705 | MS.gene91310 | 0.831224 | 1.88E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene91310 | 0.811564 | 6.57E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene91310 | 0.806129 | 9.55E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene91310 | 0.841401 | 4.86E-58 | -1.69E-46 |
| MS.gene052358 | MS.gene91310 | -0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene91310 | 0.820298 | 7.39E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene91310 | 0.82535 | 4.92E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene91310 | 0.838205 | 3.30E-57 | -1.69E-46 |
| MS.gene052773 | MS.gene91310 | 0.804698 | 1.91E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene91310 | -0.825592 | 4.31E-54 | -1.69E-46 |
| MS.gene053084 | MS.gene91310 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene91310 | 0.847979 | 8.21E-60 | -1.69E-46 |
| MS.gene053294 | MS.gene91310 | 0.824491 | 7.84E-54 | -1.69E-46 |
| MS.gene053592 | MS.gene91310 | 0.812086 | 5.06E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene91310 | 0.842512 | 2.47E-58 | -1.69E-46 |
| MS.gene053883 | MS.gene91310 | 0.832405 | 9.63E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene91310 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene91310 | -0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene91310 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene91310 | 0.81931 | 1.24E-52 | -1.69E-46 |
| MS.gene054967 | MS.gene91310 | 0.800245 | 1.58E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene91310 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene91310 | 0.804176 | 2.45E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene91310 | 0.84062 | 7.79E-58 | -1.69E-46 |
| MS.gene055808 | MS.gene91310 | 0.8372 | 5.98E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene91310 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene91310 | 0.818649 | 1.76E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene91310 | 0.848537 | 5.75E-60 | -1.69E-46 |
| MS.gene056366 | MS.gene91310 | 0.818238 | 2.18E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene91310 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene057027 | MS.gene91310 | 0.815204 | 1.04E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene91310 | 0.805814 | 1.11E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene91310 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene91310 | 0.809009 | 2.34E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene91310 | 0.833279 | 5.84E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene91310 | 0.819701 | 1.01E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene91310 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene91310 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene91310 | 0.813523 | 2.45E-51 | -1.69E-46 |
| MS.gene059084 | MS.gene91310 | 0.822495 | 2.30E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene91310 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene91310 | 0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene91310 | 0.858409 | 8.40E-63 | -1.69E-46 |
| MS.gene059625 | MS.gene91310 | 0.845183 | 4.76E-59 | -1.69E-46 |
| MS.gene059935 | MS.gene91310 | 0.816969 | 4.20E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene91310 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene91310 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene91310 | 0.846438 | 2.17E-59 | -1.69E-46 |
| MS.gene060521 | MS.gene91310 | 0.815839 | 7.52E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene91310 | 0.837589 | 4.75E-57 | -1.69E-46 |
| MS.gene060587 | MS.gene91310 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene060690 | MS.gene91310 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene91310 | -0.834824 | 2.40E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91310.t1 | MTR_1g106210 | 99.029 | 206 | 2 | 0 | 12 | 217 | 56 | 261 | 3.16e-148 | 413 |
| MS.gene91310.t1 | MTR_5g005040 | 39.333 | 150 | 63 | 5 | 65 | 212 | 109 | 232 | 6.51e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91310.t1 | AT3G19650 | 37.805 | 164 | 89 | 6 | 56 | 217 | 150 | 302 | 8.58e-12 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTTTCATTCCTTTC+TGG | 0.052010 | 1.3:-72977057 | None:intergenic |
| ATCTGATCATCCTCATTCTT+TGG | 0.243825 | 1.3:-72977327 | None:intergenic |
| TGAGGAAAAGGCCAGCATTT+AGG | 0.247990 | 1.3:+72976953 | MS.gene91310:CDS |
| TTTCTGGAGGGTGGCTAGTA+TGG | 0.266311 | 1.3:-72977041 | None:intergenic |
| TGAGAAATCACTGGCTAAAC+TGG | 0.294321 | 1.3:+72976870 | MS.gene91310:CDS |
| GAGGAAAAGGCCAGCATTTA+GGG | 0.296936 | 1.3:+72976954 | MS.gene91310:CDS |
| TTCTCTGTTTGAGTCTTAAT+AGG | 0.302168 | 1.3:-72977261 | None:intergenic |
| CTTCCTAGGTTCTCGCTTGT+TGG | 0.303209 | 1.3:-72977145 | None:intergenic |
| AGAGGAAGAGACAAATTTAA+TGG | 0.334230 | 1.3:+72977222 | MS.gene91310:CDS |
| TTTGACCTGTCTCCAACCTT+TGG | 0.360011 | 1.3:-72976831 | None:intergenic |
| TCCTCTGCAATTCGCTTCTC+AGG | 0.377354 | 1.3:-72977114 | None:intergenic |
| GCTTCTCAGGTCTATCTAGA+TGG | 0.381632 | 1.3:-72977101 | None:intergenic |
| TCAGGTCTATCTAGATGGTT+AGG | 0.410188 | 1.3:-72977096 | None:intergenic |
| GATGAAAATCCATCCTTCCT+AGG | 0.435435 | 1.3:-72977159 | None:intergenic |
| TCCTTTCATTCCTTTCTGGA+GGG | 0.447281 | 1.3:-72977053 | None:intergenic |
| GGATGATCAGATTGCAAAGC+TGG | 0.457045 | 1.3:+72977338 | MS.gene91310:CDS |
| TTCCTTTCATTCCTTTCTGG+AGG | 0.457901 | 1.3:-72977054 | None:intergenic |
| CAACACCTTCTGTGAGGAAA+AGG | 0.461132 | 1.3:+72976941 | MS.gene91310:CDS |
| TTTACTGTCACTGTCGCAGC+TGG | 0.462931 | 1.3:-72977012 | None:intergenic |
| ATCTTCTTCTCCCTAAATGC+TGG | 0.485997 | 1.3:-72976964 | None:intergenic |
| AAAGGTATATGCTCAAAGTA+AGG | 0.495225 | 1.3:+72976801 | MS.gene91310:CDS |
| TTTCATTCCTTTCTGGAGGG+TGG | 0.506208 | 1.3:-72977050 | None:intergenic |
| TTTCATCAAGAGTAAGGTAT+GGG | 0.512420 | 1.3:+72977175 | MS.gene91310:CDS |
| TGGTCGAAGCACTGGTCAAA+GGG | 0.514223 | 1.3:+72976652 | MS.gene91310:CDS |
| GTGCAGGTTGGTCGAAGCAC+TGG | 0.521659 | 1.3:+72976644 | MS.gene91310:CDS |
| AGAAGCGAATTGCAGAGGAC+AGG | 0.525004 | 1.3:+72977118 | MS.gene91310:CDS |
| TAAGGAGAATAACCAAAGGT+TGG | 0.542846 | 1.3:+72976819 | MS.gene91310:CDS |
| AATAACCAAAGGTTGGAGAC+AGG | 0.542889 | 1.3:+72976826 | MS.gene91310:CDS |
| TTGGTCGAAGCACTGGTCAA+AGG | 0.551358 | 1.3:+72976651 | MS.gene91310:CDS |
| GAAGCGAATTGCAGAGGACA+GGG | 0.551739 | 1.3:+72977119 | MS.gene91310:CDS |
| TTAAGACTCAAACAGAGAAG+TGG | 0.554278 | 1.3:+72977265 | MS.gene91310:CDS |
| GCAAAGAGATGAGAAATCAC+TGG | 0.563837 | 1.3:+72976861 | MS.gene91310:CDS |
| AAGCGAGAACCTAGGAAGGA+TGG | 0.574352 | 1.3:+72977150 | MS.gene91310:CDS |
| ACCCTCCAGAAAGGAATGAA+AGG | 0.576042 | 1.3:+72977052 | MS.gene91310:CDS |
| TCCAGAAAGGAATGAAAGGA+AGG | 0.580588 | 1.3:+72977056 | MS.gene91310:CDS |
| ATACTAGCCACCCTCCAGAA+AGG | 0.585699 | 1.3:+72977043 | MS.gene91310:CDS |
| GAAACATGATTTGTATCAAG+AGG | 0.586742 | 1.3:+72977287 | MS.gene91310:CDS |
| AAATCACTGGCTAAACTGGA+TGG | 0.588753 | 1.3:+72976874 | MS.gene91310:CDS |
| AGATTCTATTCCAAAGAATG+AGG | 0.590814 | 1.3:+72977317 | MS.gene91310:CDS |
| ACCTGAGAAGCGAATTGCAG+AGG | 0.607322 | 1.3:+72977113 | MS.gene91310:CDS |
| TGAATGGGGCAATACTGTGC+AGG | 0.607456 | 1.3:+72976628 | MS.gene91310:CDS |
| TTCATCAAGAGTAAGGTATG+GGG | 0.620262 | 1.3:+72977176 | MS.gene91310:CDS |
| CAACAAGCGAGAACCTAGGA+AGG | 0.622024 | 1.3:+72977146 | MS.gene91310:CDS |
| GATCTCAGTGGATTCAAGAG+AGG | 0.625358 | 1.3:+72976984 | MS.gene91310:CDS |
| AGAAAGGAATGAAAGGAAGG+AGG | 0.636511 | 1.3:+72977059 | MS.gene91310:CDS |
| TCATCAAGAGTAAGGTATGG+GGG | 0.637056 | 1.3:+72977177 | MS.gene91310:CDS |
| AATCCAACAAGCGAGAACCT+AGG | 0.638185 | 1.3:+72977142 | MS.gene91310:CDS |
| ACTGGTCAAAGGGAAGCTGA+TGG | 0.653810 | 1.3:+72976662 | MS.gene91310:CDS |
| TGGGGCAATACTGTGCAGGT+TGG | 0.672427 | 1.3:+72976632 | MS.gene91310:CDS |
| AAAGTAAGGAGAATAACCAA+AGG | 0.679155 | 1.3:+72976815 | MS.gene91310:CDS |
| ATGATCCAACACCTTCTGTG+AGG | 0.687855 | 1.3:+72976935 | MS.gene91310:CDS |
| TAGGGAGAAGAAGATCTCAG+TGG | 0.726006 | 1.3:+72976972 | MS.gene91310:CDS |
| GGAGGCAATAGCAATCACAG+AGG | 0.738956 | 1.3:+72977204 | MS.gene91310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATATATTATTTTCTTT+TGG | + | chr1.3:72976706-72976725 | MS.gene91310:intron | 10.0% |
| ! | TTTATTGTATATGGATGGTT+TGG | + | chr1.3:72976730-72976749 | MS.gene91310:intron | 25.0% |
| !!! | TCTTTTGGCTTTATTGTATA+TGG | + | chr1.3:72976721-72976740 | MS.gene91310:intron | 25.0% |
| !!! | TGTATGCAAACTATTTTTCT+GGG | + | chr1.3:72976529-72976548 | MS.gene91310:intron | 25.0% |
| AAAGTAAGGAGAATAACCAA+AGG | + | chr1.3:72976815-72976834 | MS.gene91310:CDS | 30.0% | |
| AGAGGAAGAGACAAATTTAA+TGG | + | chr1.3:72977222-72977241 | MS.gene91310:CDS | 30.0% | |
| AGATTCTATTCCAAAGAATG+AGG | + | chr1.3:72977317-72977336 | MS.gene91310:CDS | 30.0% | |
| TTCTCTGTTTGAGTCTTAAT+AGG | - | chr1.3:72977264-72977283 | None:intergenic | 30.0% | |
| TTTCATCAAGAGTAAGGTAT+GGG | + | chr1.3:72977175-72977194 | MS.gene91310:CDS | 30.0% | |
| ! | AAAGGTATATGCTCAAAGTA+AGG | + | chr1.3:72976801-72976820 | MS.gene91310:CDS | 30.0% |
| ! | ATGGATTTTCATCAAGAGTA+AGG | + | chr1.3:72977169-72977188 | MS.gene91310:CDS | 30.0% |
| ! | GAAACATGATTTGTATCAAG+AGG | + | chr1.3:72977287-72977306 | MS.gene91310:CDS | 30.0% |
| ! | TTTTAACAGCATCATGAATG+GGG | + | chr1.3:72976614-72976633 | MS.gene91310:intron | 30.0% |
| ! | TTTTCATCAAGAGTAAGGTA+TGG | + | chr1.3:72977174-72977193 | MS.gene91310:CDS | 30.0% |
| !! | GTATGCAAACTATTTTTCTG+GGG | + | chr1.3:72976530-72976549 | MS.gene91310:intron | 30.0% |
| !! | GTGTATGCAAACTATTTTTC+TGG | + | chr1.3:72976528-72976547 | MS.gene91310:intron | 30.0% |
| !! | GTTTGGAATCGAAGAATTTT+GGG | - | chr1.3:72976778-72976797 | None:intergenic | 30.0% |
| !! | GTTTTAACAGCATCATGAAT+GGG | + | chr1.3:72976613-72976632 | MS.gene91310:intron | 30.0% |
| !! | TGTTTGGAATCGAAGAATTT+TGG | - | chr1.3:72976779-72976798 | None:intergenic | 30.0% |
| !! | TTGGCTTTATTGTATATGGA+TGG | + | chr1.3:72976725-72976744 | MS.gene91310:intron | 30.0% |
| !!! | TGTTTTAACAGCATCATGAA+TGG | + | chr1.3:72976612-72976631 | MS.gene91310:intron | 30.0% |
| ATCTGATCATCCTCATTCTT+TGG | - | chr1.3:72977330-72977349 | None:intergenic | 35.0% | |
| GATGCTGTTAAAACATGCAT+TGG | - | chr1.3:72976607-72976626 | None:intergenic | 35.0% | |
| TAAGGAGAATAACCAAAGGT+TGG | + | chr1.3:72976819-72976838 | MS.gene91310:CDS | 35.0% | |
| TCTTCGATTCCAAACAGAAA+AGG | + | chr1.3:72976783-72976802 | MS.gene91310:intron | 35.0% | |
| TTAAGACTCAAACAGAGAAG+TGG | + | chr1.3:72977265-72977284 | MS.gene91310:CDS | 35.0% | |
| TTCATCAAGAGTAAGGTATG+GGG | + | chr1.3:72977176-72977195 | MS.gene91310:CDS | 35.0% | |
| ! | GAGCATATACCTTTTCTGTT+TGG | - | chr1.3:72976795-72976814 | None:intergenic | 35.0% |
| AATAACCAAAGGTTGGAGAC+AGG | + | chr1.3:72976826-72976845 | MS.gene91310:CDS | 40.0% | |
| AGAAAGGAATGAAAGGAAGG+AGG | + | chr1.3:72977059-72977078 | MS.gene91310:CDS | 40.0% | |
| ATCTTCTTCTCCCTAAATGC+TGG | - | chr1.3:72976967-72976986 | None:intergenic | 40.0% | |
| GATGAAAATCCATCCTTCCT+AGG | - | chr1.3:72977162-72977181 | None:intergenic | 40.0% | |
| GCAAAGAGATGAGAAATCAC+TGG | + | chr1.3:72976861-72976880 | MS.gene91310:CDS | 40.0% | |
| TCAGGTCTATCTAGATGGTT+AGG | - | chr1.3:72977099-72977118 | None:intergenic | 40.0% | |
| TCATCAAGAGTAAGGTATGG+GGG | + | chr1.3:72977177-72977196 | MS.gene91310:CDS | 40.0% | |
| TCCAGAAAGGAATGAAAGGA+AGG | + | chr1.3:72977056-72977075 | MS.gene91310:CDS | 40.0% | |
| TCCTTCCTTTCATTCCTTTC+TGG | - | chr1.3:72977060-72977079 | None:intergenic | 40.0% | |
| TCCTTTCATTCCTTTCTGGA+GGG | - | chr1.3:72977056-72977075 | None:intergenic | 40.0% | |
| TTCCTTTCATTCCTTTCTGG+AGG | - | chr1.3:72977057-72977076 | None:intergenic | 40.0% | |
| ! | AAATCACTGGCTAAACTGGA+TGG | + | chr1.3:72976874-72976893 | MS.gene91310:CDS | 40.0% |
| ! | TGAGAAATCACTGGCTAAAC+TGG | + | chr1.3:72976870-72976889 | MS.gene91310:CDS | 40.0% |
| !! | GAAGAGACAGTTTTCGAGAA+AGG | + | chr1.3:72976908-72976927 | MS.gene91310:CDS | 40.0% |
| !!! | AAACTATTTTTCTGGGGCGT+GGG | + | chr1.3:72976536-72976555 | MS.gene91310:intron | 40.0% |
| AATCCAACAAGCGAGAACCT+AGG | + | chr1.3:72977142-72977161 | MS.gene91310:CDS | 45.0% | |
| ACCCTCCAGAAAGGAATGAA+AGG | + | chr1.3:72977052-72977071 | MS.gene91310:CDS | 45.0% | |
| ATGATCCAACACCTTCTGTG+AGG | + | chr1.3:72976935-72976954 | MS.gene91310:CDS | 45.0% | |
| CAACACCTTCTGTGAGGAAA+AGG | + | chr1.3:72976941-72976960 | MS.gene91310:CDS | 45.0% | |
| GAGGAAAAGGCCAGCATTTA+GGG | + | chr1.3:72976954-72976973 | MS.gene91310:CDS | 45.0% | |
| GCTTCTCAGGTCTATCTAGA+TGG | - | chr1.3:72977104-72977123 | None:intergenic | 45.0% | |
| GGATGATCAGATTGCAAAGC+TGG | + | chr1.3:72977338-72977357 | MS.gene91310:CDS | 45.0% | |
| TAGGGAGAAGAAGATCTCAG+TGG | + | chr1.3:72976972-72976991 | MS.gene91310:CDS | 45.0% | |
| TGAGGAAAAGGCCAGCATTT+AGG | + | chr1.3:72976953-72976972 | MS.gene91310:CDS | 45.0% | |
| TTTGACCTGTCTCCAACCTT+TGG | - | chr1.3:72976834-72976853 | None:intergenic | 45.0% | |
| ! | GATCTCAGTGGATTCAAGAG+AGG | + | chr1.3:72976984-72977003 | MS.gene91310:CDS | 45.0% |
| ! | GCATTGGAAAGCATATACCG+AGG | - | chr1.3:72976591-72976610 | None:intergenic | 45.0% |
| ! | TTTCATTCCTTTCTGGAGGG+TGG | - | chr1.3:72977053-72977072 | None:intergenic | 45.0% |
| !! | CTTTTCCTCACAGAAGGTGT+TGG | - | chr1.3:72976943-72976962 | None:intergenic | 45.0% |
| !!! | CAAACTATTTTTCTGGGGCG+TGG | + | chr1.3:72976535-72976554 | MS.gene91310:intron | 45.0% |
| !! | TATATATCAATATAAAATTA+AGG | - | chr1.3:72976695-72976714 | None:intergenic | 5.0% |
| AAGCGAGAACCTAGGAAGGA+TGG | + | chr1.3:72977150-72977169 | MS.gene91310:CDS | 50.0% | |
| ACCTGAGAAGCGAATTGCAG+AGG | + | chr1.3:72977113-72977132 | MS.gene91310:CDS | 50.0% | |
| ACTGGTCAAAGGGAAGCTGA+TGG | + | chr1.3:72976662-72976681 | MS.gene91310:CDS | 50.0% | |
| AGAAGCGAATTGCAGAGGAC+AGG | + | chr1.3:72977118-72977137 | MS.gene91310:CDS | 50.0% | |
| AGAGTAAGGTATGGGGGAAG+TGG | + | chr1.3:72977183-72977202 | MS.gene91310:CDS | 50.0% | |
| ATACTAGCCACCCTCCAGAA+AGG | + | chr1.3:72977043-72977062 | MS.gene91310:CDS | 50.0% | |
| CAACAAGCGAGAACCTAGGA+AGG | + | chr1.3:72977146-72977165 | MS.gene91310:CDS | 50.0% | |
| CTTCCTAGGTTCTCGCTTGT+TGG | - | chr1.3:72977148-72977167 | None:intergenic | 50.0% | |
| GAAGCGAATTGCAGAGGACA+GGG | + | chr1.3:72977119-72977138 | MS.gene91310:CDS | 50.0% | |
| GGAGGCAATAGCAATCACAG+AGG | + | chr1.3:72977204-72977223 | MS.gene91310:CDS | 50.0% | |
| TCCTCTGCAATTCGCTTCTC+AGG | - | chr1.3:72977117-72977136 | None:intergenic | 50.0% | |
| TGAATGGGGCAATACTGTGC+AGG | + | chr1.3:72976628-72976647 | MS.gene91310:CDS | 50.0% | |
| TTTACTGTCACTGTCGCAGC+TGG | - | chr1.3:72977015-72977034 | None:intergenic | 50.0% | |
| ! | GCATATACCGAGGCACTTGA+AGG | - | chr1.3:72976581-72976600 | None:intergenic | 50.0% |
| ! | TTTCTGGAGGGTGGCTAGTA+TGG | - | chr1.3:72977044-72977063 | None:intergenic | 50.0% |
| !! | TGGTCGAAGCACTGGTCAAA+GGG | + | chr1.3:72976652-72976671 | MS.gene91310:CDS | 50.0% |
| !! | TTGGTCGAAGCACTGGTCAA+AGG | + | chr1.3:72976651-72976670 | MS.gene91310:CDS | 50.0% |
| GTAAGGTATGGGGGAAGTGG+AGG | + | chr1.3:72977186-72977205 | MS.gene91310:CDS | 55.0% | |
| TGGGGCAATACTGTGCAGGT+TGG | + | chr1.3:72976632-72976651 | MS.gene91310:CDS | 55.0% | |
| ! | ACCGAGGCACTTGAAGGCAT+GGG | - | chr1.3:72976575-72976594 | None:intergenic | 55.0% |
| ! | TACCGAGGCACTTGAAGGCA+TGG | - | chr1.3:72976576-72976595 | None:intergenic | 55.0% |
| !!! | GCTGGCCTTTTCCTCACAGA+AGG | - | chr1.3:72976949-72976968 | None:intergenic | 55.0% |
| CCCCATGCCTTCAAGTGCCT+CGG | + | chr1.3:72976571-72976590 | MS.gene91310:intron | 60.0% | |
| ! | CCGAGGCACTTGAAGGCATG+GGG | - | chr1.3:72976574-72976593 | None:intergenic | 60.0% |
| !! | GTGCAGGTTGGTCGAAGCAC+TGG | + | chr1.3:72976644-72976663 | MS.gene91310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 72976518 | 72977380 | 72976518 | ID=MS.gene91310 |
| chr1.3 | mRNA | 72976518 | 72977380 | 72976518 | ID=MS.gene91310.t1;Parent=MS.gene91310 |
| chr1.3 | exon | 72976518 | 72976529 | 72976518 | ID=MS.gene91310.t1.exon1;Parent=MS.gene91310.t1 |
| chr1.3 | CDS | 72976518 | 72976529 | 72976518 | ID=cds.MS.gene91310.t1;Parent=MS.gene91310.t1 |
| chr1.3 | exon | 72976623 | 72976683 | 72976623 | ID=MS.gene91310.t1.exon2;Parent=MS.gene91310.t1 |
| chr1.3 | CDS | 72976623 | 72976683 | 72976623 | ID=cds.MS.gene91310.t1;Parent=MS.gene91310.t1 |
| chr1.3 | exon | 72976800 | 72977380 | 72976800 | ID=MS.gene91310.t1.exon3;Parent=MS.gene91310.t1 |
| chr1.3 | CDS | 72976800 | 72977380 | 72976800 | ID=cds.MS.gene91310.t1;Parent=MS.gene91310.t1 |
| Gene Sequence |
| Protein sequence |
