Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50005.t1 | XP_013454832.1 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.30E-106 | 394.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50005.t1 | Q24133 | 44.1 | 202 | 93 | 7 | 1 | 195 | 1 | 189 | 2.3e-30 | 133.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50005.t1 | G8A2L9 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 1.7e-106 | 394.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049208 | MS.gene50005 | 0.815017 | 1.15E-51 | -1.69E-46 |
| MS.gene049674 | MS.gene50005 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene50005 | 0.818044 | 2.41E-52 | -1.69E-46 |
| MS.gene050085 | MS.gene50005 | 0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene50005 | 0.808696 | 2.73E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene50005 | 0.807455 | 5.01E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene50005 | 0.82072 | 5.91E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene50005 | 0.801901 | 7.23E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene50005 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene50005 | 0.848701 | 5.18E-60 | -1.69E-46 |
| MS.gene050838 | MS.gene50005 | 0.872886 | 2.25E-67 | -1.69E-46 |
| MS.gene050945 | MS.gene50005 | 0.808632 | 2.82E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene50005 | 0.802205 | 6.27E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene50005 | 0.827294 | 1.69E-54 | -1.69E-46 |
| MS.gene051102 | MS.gene50005 | 0.825891 | 3.66E-54 | -1.69E-46 |
| MS.gene051233 | MS.gene50005 | 0.835546 | 1.58E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene50005 | 0.842564 | 2.39E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene50005 | 0.848036 | 7.91E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene50005 | 0.80538 | 1.37E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene50005 | 0.835202 | 1.93E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene50005 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene50005 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene50005 | 0.824783 | 6.69E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene50005 | 0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene50005 | 0.815357 | 9.63E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene50005 | 0.823934 | 1.06E-53 | -1.69E-46 |
| MS.gene052242 | MS.gene50005 | -0.833704 | 4.58E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene50005 | 0.832429 | 9.50E-56 | -1.69E-46 |
| MS.gene052335 | MS.gene50005 | 0.820735 | 5.86E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene50005 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene052527 | MS.gene50005 | 0.809841 | 1.55E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene50005 | 0.825875 | 3.69E-54 | -1.69E-46 |
| MS.gene052932 | MS.gene50005 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene50005 | 0.811204 | 7.87E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene50005 | 0.841423 | 4.79E-58 | -1.69E-46 |
| MS.gene053109 | MS.gene50005 | 0.811645 | 6.31E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene50005 | 0.821565 | 3.77E-53 | -1.69E-46 |
| MS.gene053167 | MS.gene50005 | 0.813961 | 1.96E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene50005 | 0.845254 | 4.55E-59 | -1.69E-46 |
| MS.gene05469 | MS.gene50005 | 0.810678 | 1.02E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene50005 | 0.85115 | 1.07E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene50005 | 0.821371 | 4.18E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene50005 | 0.840758 | 7.17E-58 | -1.69E-46 |
| MS.gene055469 | MS.gene50005 | 0.805672 | 1.19E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene50005 | 0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene50005 | 0.805967 | 1.03E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene50005 | 0.842057 | 3.26E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene50005 | 0.853092 | 3.00E-61 | -1.69E-46 |
| MS.gene056390 | MS.gene50005 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene50005 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene056752 | MS.gene50005 | 0.800355 | 1.50E-48 | -1.69E-46 |
| MS.gene056764 | MS.gene50005 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene50005 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene50005 | 0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene50005 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene50005 | -0.807403 | 5.14E-50 | -1.69E-46 |
| MS.gene05781 | MS.gene50005 | 0.817117 | 3.89E-52 | -1.69E-46 |
| MS.gene057890 | MS.gene50005 | -0.815167 | 1.06E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene50005 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene50005 | 0.803333 | 3.66E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene50005 | 0.809685 | 1.67E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene50005 | 0.803646 | 3.16E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene50005 | 0.853957 | 1.69E-61 | -1.69E-46 |
| MS.gene058639 | MS.gene50005 | 0.862641 | 4.39E-64 | -1.69E-46 |
| MS.gene058758 | MS.gene50005 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene50005 | 0.839908 | 1.20E-57 | -1.69E-46 |
| MS.gene059007 | MS.gene50005 | 0.804233 | 2.38E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene50005 | 0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene50005 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene50005 | 0.869726 | 2.50E-66 | -1.69E-46 |
| MS.gene059227 | MS.gene50005 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene50005 | 0.813127 | 2.99E-51 | -1.69E-46 |
| MS.gene060465 | MS.gene50005 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene060563 | MS.gene50005 | 0.821474 | 3.96E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene50005 | 0.814204 | 1.74E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene50005 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene50005 | 0.839904 | 1.20E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene50005 | 0.807852 | 4.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50005.t1 | MTR_4g015840 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 1.10e-142 | 401 |
| MS.gene50005.t1 | MTR_4g078850 | 65.366 | 205 | 56 | 4 | 1 | 195 | 1 | 200 | 1.24e-82 | 249 |
| MS.gene50005.t1 | MTR_4g015840 | 100.000 | 118 | 0 | 0 | 78 | 195 | 1 | 118 | 4.83e-82 | 244 |
| MS.gene50005.t1 | MTR_2g014470 | 65.500 | 200 | 59 | 4 | 1 | 195 | 1 | 195 | 3.09e-81 | 245 |
| MS.gene50005.t1 | MTR_2g090705 | 62.136 | 206 | 52 | 5 | 1 | 195 | 1 | 191 | 1.02e-71 | 220 |
| MS.gene50005.t1 | MTR_2g014480 | 57.073 | 205 | 72 | 4 | 1 | 195 | 1 | 199 | 8.56e-67 | 208 |
| MS.gene50005.t1 | MTR_3g108020 | 55.556 | 198 | 69 | 5 | 1 | 195 | 1 | 182 | 7.22e-60 | 190 |
| MS.gene50005.t1 | MTR_3g437850 | 36.816 | 201 | 85 | 4 | 3 | 195 | 1 | 167 | 4.23e-38 | 129 |
| MS.gene50005.t1 | MTR_7g109340 | 61.972 | 71 | 26 | 1 | 5 | 75 | 27 | 96 | 5.08e-24 | 97.1 |
| MS.gene50005.t1 | MTR_5g037880 | 54.667 | 75 | 27 | 1 | 4 | 71 | 5 | 79 | 1.61e-20 | 86.7 |
| MS.gene50005.t1 | MTR_7g101070 | 55.385 | 65 | 29 | 0 | 4 | 68 | 358 | 422 | 2.39e-20 | 88.2 |
| MS.gene50005.t1 | MTR_3g437360 | 49.367 | 79 | 40 | 0 | 3 | 81 | 4 | 82 | 1.54e-19 | 84.7 |
| MS.gene50005.t1 | MTR_3g087030 | 55.556 | 72 | 30 | 1 | 4 | 75 | 82 | 151 | 1.74e-19 | 85.5 |
| MS.gene50005.t1 | MTR_2g104030 | 41.803 | 122 | 51 | 4 | 4 | 125 | 70 | 171 | 2.02e-19 | 85.5 |
| MS.gene50005.t1 | MTR_8g006430 | 32.124 | 193 | 71 | 5 | 5 | 193 | 15 | 151 | 2.05e-19 | 85.1 |
| MS.gene50005.t1 | MTR_7g112360 | 54.545 | 66 | 27 | 1 | 5 | 67 | 17 | 82 | 6.06e-18 | 77.4 |
| MS.gene50005.t1 | MTR_7g112360 | 54.545 | 66 | 27 | 1 | 5 | 67 | 17 | 82 | 9.30e-18 | 75.5 |
| MS.gene50005.t1 | MTR_5g012530 | 47.297 | 74 | 37 | 1 | 4 | 75 | 12 | 85 | 1.28e-16 | 77.4 |
| MS.gene50005.t1 | MTR_1g110310 | 49.296 | 71 | 35 | 1 | 4 | 74 | 16 | 85 | 3.34e-16 | 76.3 |
| MS.gene50005.t1 | MTR_5g065860 | 51.562 | 64 | 30 | 1 | 4 | 67 | 48 | 110 | 8.46e-16 | 71.2 |
| MS.gene50005.t1 | MTR_7g069480 | 50.000 | 70 | 33 | 1 | 3 | 72 | 26 | 93 | 1.13e-15 | 74.7 |
| MS.gene50005.t1 | MTR_8g022310 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 1.76e-15 | 72.0 |
| MS.gene50005.t1 | MTR_8g022310 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 2.84e-15 | 71.2 |
| MS.gene50005.t1 | MTR_3g027580 | 50.704 | 71 | 34 | 1 | 4 | 74 | 89 | 158 | 2.89e-15 | 73.6 |
| MS.gene50005.t1 | MTR_8g022310 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 3.02e-15 | 71.2 |
| MS.gene50005.t1 | MTR_8g022310 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 3.55e-15 | 71.6 |
| MS.gene50005.t1 | MTR_5g035770 | 49.315 | 73 | 36 | 1 | 4 | 76 | 25 | 96 | 7.10e-15 | 72.4 |
| MS.gene50005.t1 | MTR_4g085070 | 48.333 | 60 | 28 | 1 | 11 | 67 | 19 | 78 | 1.32e-14 | 68.6 |
| MS.gene50005.t1 | MTR_6g027110 | 42.667 | 75 | 39 | 1 | 3 | 73 | 1 | 75 | 1.61e-14 | 67.8 |
| MS.gene50005.t1 | MTR_3g100330 | 52.239 | 67 | 29 | 2 | 3 | 68 | 68 | 132 | 2.95e-14 | 68.9 |
| MS.gene50005.t1 | MTR_6g027030 | 42.667 | 75 | 39 | 1 | 3 | 73 | 1 | 75 | 7.16e-14 | 67.8 |
| MS.gene50005.t1 | MTR_1g029460 | 44.444 | 72 | 39 | 1 | 3 | 74 | 5 | 75 | 7.32e-14 | 69.3 |
| MS.gene50005.t1 | MTR_1g052110 | 46.154 | 65 | 34 | 1 | 6 | 70 | 40 | 103 | 1.79e-13 | 67.8 |
| MS.gene50005.t1 | MTR_6g026940 | 43.478 | 69 | 35 | 1 | 3 | 67 | 1 | 69 | 1.99e-13 | 65.9 |
| MS.gene50005.t1 | MTR_7g092380 | 31.707 | 123 | 77 | 3 | 6 | 122 | 24 | 145 | 5.56e-13 | 66.2 |
| MS.gene50005.t1 | MTR_2g087660 | 56.338 | 71 | 26 | 1 | 5 | 75 | 14 | 79 | 6.51e-13 | 66.2 |
| MS.gene50005.t1 | MTR_5g065160 | 44.286 | 70 | 38 | 1 | 4 | 73 | 83 | 151 | 8.02e-13 | 66.2 |
| MS.gene50005.t1 | MTR_5g065160 | 44.286 | 70 | 38 | 1 | 4 | 73 | 82 | 150 | 8.64e-13 | 66.2 |
| MS.gene50005.t1 | MTR_2g087660 | 56.338 | 71 | 26 | 1 | 5 | 75 | 14 | 79 | 9.09e-13 | 66.2 |
| MS.gene50005.t1 | MTR_5g065160 | 44.286 | 70 | 38 | 1 | 4 | 73 | 76 | 144 | 1.01e-12 | 66.2 |
| MS.gene50005.t1 | MTR_5g065160 | 44.286 | 70 | 38 | 1 | 4 | 73 | 83 | 151 | 1.03e-12 | 66.2 |
| MS.gene50005.t1 | MTR_4g023470 | 39.655 | 116 | 61 | 3 | 5 | 120 | 87 | 193 | 1.95e-12 | 65.5 |
| MS.gene50005.t1 | MTR_5g004570 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 3.68e-12 | 63.5 |
| MS.gene50005.t1 | MTR_6g471050 | 38.710 | 124 | 55 | 4 | 30 | 151 | 7 | 111 | 5.78e-12 | 63.9 |
| MS.gene50005.t1 | MTR_2g020420 | 53.846 | 65 | 28 | 1 | 3 | 67 | 68 | 130 | 7.91e-12 | 63.9 |
| MS.gene50005.t1 | MTR_2g020420 | 53.846 | 65 | 28 | 1 | 3 | 67 | 68 | 130 | 8.77e-12 | 63.5 |
| MS.gene50005.t1 | MTR_4g109510 | 30.769 | 143 | 78 | 4 | 5 | 129 | 9 | 148 | 1.40e-11 | 62.8 |
| MS.gene50005.t1 | MTR_4g050420 | 52.113 | 71 | 29 | 1 | 5 | 75 | 14 | 79 | 2.60e-11 | 62.0 |
| MS.gene50005.t1 | MTR_4g118660 | 46.154 | 78 | 39 | 2 | 3 | 80 | 107 | 181 | 3.54e-11 | 62.0 |
| MS.gene50005.t1 | MTR_8g037810 | 42.697 | 89 | 48 | 2 | 5 | 91 | 7 | 94 | 4.05e-11 | 61.2 |
| MS.gene50005.t1 | MTR_2g435450 | 44.615 | 65 | 34 | 1 | 3 | 67 | 38 | 100 | 8.64e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50005.t1 | AT2G20560 | 69.802 | 202 | 45 | 4 | 1 | 195 | 1 | 193 | 5.15e-87 | 259 |
| MS.gene50005.t1 | AT5G01390 | 70.918 | 196 | 50 | 4 | 1 | 195 | 1 | 190 | 8.31e-86 | 253 |
| MS.gene50005.t1 | AT3G08910 | 73.096 | 197 | 31 | 5 | 1 | 195 | 1 | 177 | 1.34e-85 | 255 |
| MS.gene50005.t1 | AT5G01390 | 70.918 | 196 | 50 | 4 | 1 | 195 | 1 | 190 | 2.86e-84 | 253 |
| MS.gene50005.t1 | AT4G28480 | 64.762 | 210 | 53 | 4 | 1 | 195 | 1 | 204 | 1.79e-78 | 238 |
| MS.gene50005.t1 | AT5G25530 | 56.098 | 205 | 69 | 6 | 1 | 195 | 1 | 194 | 3.80e-65 | 204 |
| MS.gene50005.t1 | AT5G25530 | 53.991 | 213 | 69 | 7 | 1 | 195 | 1 | 202 | 4.09e-62 | 196 |
| MS.gene50005.t1 | AT4G28480 | 68.323 | 161 | 36 | 4 | 1 | 156 | 1 | 151 | 1.72e-60 | 190 |
| MS.gene50005.t1 | AT5G01390 | 68.276 | 145 | 43 | 2 | 1 | 145 | 1 | 142 | 2.22e-58 | 183 |
| MS.gene50005.t1 | AT5G01390 | 68.276 | 145 | 43 | 2 | 1 | 145 | 1 | 142 | 1.21e-57 | 182 |
| MS.gene50005.t1 | AT1G10350 | 49.510 | 204 | 94 | 2 | 1 | 195 | 1 | 204 | 9.45e-54 | 175 |
| MS.gene50005.t1 | AT3G47940 | 45.374 | 227 | 68 | 5 | 1 | 195 | 1 | 203 | 1.27e-52 | 172 |
| MS.gene50005.t1 | AT1G59725 | 48.500 | 200 | 83 | 4 | 1 | 195 | 1 | 185 | 1.84e-47 | 158 |
| MS.gene50005.t1 | AT3G62600 | 47.107 | 121 | 46 | 4 | 2 | 122 | 24 | 126 | 4.28e-22 | 92.0 |
| MS.gene50005.t1 | AT1G80030 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 8.66e-22 | 92.4 |
| MS.gene50005.t1 | AT1G80030 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-21 | 92.0 |
| MS.gene50005.t1 | AT1G80030 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-21 | 92.0 |
| MS.gene50005.t1 | AT1G80030 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-21 | 92.0 |
| MS.gene50005.t1 | AT3G17830 | 56.000 | 75 | 31 | 1 | 2 | 76 | 61 | 133 | 2.68e-20 | 88.2 |
| MS.gene50005.t1 | AT2G22360 | 53.409 | 88 | 29 | 3 | 4 | 89 | 86 | 163 | 3.37e-20 | 87.8 |
| MS.gene50005.t1 | AT4G39960 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 2.48e-19 | 85.1 |
| MS.gene50005.t1 | AT4G39960 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 2.48e-19 | 85.1 |
| MS.gene50005.t1 | AT5G03160 | 52.308 | 65 | 31 | 0 | 4 | 68 | 370 | 434 | 1.64e-17 | 80.1 |
| MS.gene50005.t1 | AT1G68370 | 52.113 | 71 | 33 | 1 | 4 | 74 | 17 | 86 | 8.96e-17 | 77.8 |
| MS.gene50005.t1 | AT1G56300 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 1.28e-16 | 73.9 |
| MS.gene50005.t1 | AT1G56300 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 1.43e-16 | 72.8 |
| MS.gene50005.t1 | AT5G16650 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 3.22e-16 | 73.2 |
| MS.gene50005.t1 | AT5G16650 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 4.06e-16 | 71.6 |
| MS.gene50005.t1 | AT5G48030 | 44.578 | 83 | 41 | 2 | 4 | 86 | 94 | 171 | 5.81e-16 | 75.5 |
| MS.gene50005.t1 | AT1G59980 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 6.94e-16 | 75.1 |
| MS.gene50005.t1 | AT1G59980 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 1.50e-15 | 74.3 |
| MS.gene50005.t1 | AT2G35720 | 29.108 | 213 | 121 | 8 | 4 | 191 | 15 | 222 | 2.83e-15 | 73.6 |
| MS.gene50005.t1 | AT2G41000 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 2.91e-15 | 71.2 |
| MS.gene50005.t1 | AT2G41000 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 4.01e-15 | 70.5 |
| MS.gene50005.t1 | AT2G20550 | 38.235 | 136 | 36 | 5 | 100 | 190 | 3 | 135 | 7.14e-15 | 71.6 |
| MS.gene50005.t1 | AT2G20550 | 38.235 | 136 | 36 | 5 | 100 | 190 | 3 | 135 | 7.14e-15 | 71.6 |
| MS.gene50005.t1 | AT3G08970 | 48.684 | 76 | 35 | 2 | 2 | 77 | 25 | 96 | 9.34e-15 | 72.0 |
| MS.gene50005.t1 | AT3G08970 | 48.684 | 76 | 35 | 2 | 2 | 77 | 25 | 96 | 9.34e-15 | 72.0 |
| MS.gene50005.t1 | AT5G22060 | 34.783 | 184 | 67 | 5 | 5 | 188 | 15 | 145 | 2.45e-14 | 70.9 |
| MS.gene50005.t1 | AT2G21510 | 46.341 | 82 | 42 | 2 | 3 | 83 | 5 | 85 | 2.48e-14 | 70.5 |
| MS.gene50005.t1 | AT2G21510 | 46.341 | 82 | 42 | 2 | 3 | 83 | 5 | 85 | 2.48e-14 | 70.5 |
| MS.gene50005.t1 | AT2G21510 | 46.341 | 82 | 42 | 2 | 3 | 83 | 5 | 85 | 2.56e-14 | 70.5 |
| MS.gene50005.t1 | AT2G21510 | 46.341 | 82 | 42 | 2 | 3 | 83 | 5 | 85 | 2.56e-14 | 70.5 |
| MS.gene50005.t1 | AT1G24120 | 44.595 | 74 | 40 | 1 | 4 | 77 | 20 | 92 | 2.68e-14 | 70.9 |
| MS.gene50005.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 3.33e-14 | 66.6 |
| MS.gene50005.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 3.33e-14 | 66.6 |
| MS.gene50005.t1 | AT2G21510 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 4.03e-14 | 69.7 |
| MS.gene50005.t1 | AT5G06910 | 49.231 | 65 | 32 | 1 | 6 | 70 | 31 | 94 | 6.13e-14 | 68.9 |
| MS.gene50005.t1 | AT3G12170 | 44.776 | 67 | 36 | 1 | 4 | 70 | 11 | 76 | 2.17e-12 | 64.3 |
| MS.gene50005.t1 | AT1G71000 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 2.95e-12 | 62.4 |
| MS.gene50005.t1 | AT1G71000 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 4.09e-12 | 62.0 |
| MS.gene50005.t1 | AT4G39150 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 4.17e-12 | 64.3 |
| MS.gene50005.t1 | AT4G39150 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 4.17e-12 | 64.3 |
| MS.gene50005.t1 | AT4G39150 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 4.17e-12 | 64.3 |
| MS.gene50005.t1 | AT3G12170 | 44.776 | 67 | 36 | 1 | 4 | 70 | 47 | 112 | 4.40e-12 | 63.9 |
| MS.gene50005.t1 | AT1G21080 | 40.741 | 81 | 47 | 1 | 3 | 83 | 5 | 84 | 6.09e-12 | 63.9 |
| MS.gene50005.t1 | AT1G21080 | 40.741 | 81 | 47 | 1 | 3 | 83 | 5 | 84 | 6.41e-12 | 63.9 |
| MS.gene50005.t1 | AT4G19570 | 52.308 | 65 | 29 | 1 | 4 | 68 | 66 | 128 | 8.65e-12 | 63.5 |
| MS.gene50005.t1 | AT3G14200 | 40.580 | 69 | 39 | 1 | 1 | 67 | 9 | 77 | 1.28e-11 | 62.0 |
| MS.gene50005.t1 | AT2G35540 | 35.294 | 102 | 59 | 2 | 4 | 100 | 71 | 170 | 1.86e-11 | 62.8 |
| MS.gene50005.t1 | AT3G57340 | 40.000 | 90 | 49 | 2 | 4 | 93 | 113 | 197 | 1.89e-11 | 62.4 |
| MS.gene50005.t1 | AT3G57340 | 40.000 | 90 | 49 | 2 | 4 | 93 | 113 | 197 | 1.89e-11 | 62.4 |
| MS.gene50005.t1 | AT5G49060 | 44.776 | 67 | 35 | 1 | 4 | 70 | 99 | 163 | 2.26e-11 | 62.0 |
| MS.gene50005.t1 | AT5G49060 | 44.776 | 67 | 35 | 1 | 4 | 70 | 99 | 163 | 2.26e-11 | 62.0 |
| MS.gene50005.t1 | AT5G05750 | 37.273 | 110 | 61 | 3 | 4 | 113 | 114 | 215 | 3.25e-11 | 61.2 |
| MS.gene50005.t1 | AT1G72416 | 42.424 | 66 | 36 | 1 | 4 | 67 | 5 | 70 | 3.55e-11 | 60.1 |
| MS.gene50005.t1 | AT1G72416 | 42.424 | 66 | 36 | 1 | 4 | 67 | 5 | 70 | 4.22e-11 | 59.7 |
| MS.gene50005.t1 | AT1G72416 | 42.424 | 66 | 36 | 1 | 4 | 67 | 5 | 70 | 4.28e-11 | 59.7 |
| MS.gene50005.t1 | AT1G72416 | 42.424 | 66 | 36 | 1 | 4 | 67 | 5 | 70 | 6.83e-11 | 59.3 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT5G37380 | 48.485 | 66 | 32 | 1 | 3 | 68 | 65 | 128 | 6.84e-11 | 60.8 |
| MS.gene50005.t1 | AT3G44110 | 50.704 | 71 | 30 | 1 | 5 | 75 | 15 | 80 | 8.73e-11 | 60.5 |
Find 60 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAGATTTGCTTGAATT+TGG | 0.168588 | 4.3:+82642650 | None:intergenic |
| TCAGCATCTTTCTTGTTATT+AGG | 0.176740 | 4.3:+82642675 | None:intergenic |
| CAGCATCTTTCTTGTTATTA+GGG | 0.208495 | 4.3:+82642676 | None:intergenic |
| GCTTTCCGAGGGGAATGTTT+AGG | 0.274668 | 4.3:-82641398 | MS.gene50005:CDS |
| CTTTCCGAGGGGAATGTTTA+GGG | 0.283758 | 4.3:-82641397 | MS.gene50005:CDS |
| AGTTTGGAGGATTTGTATAA+AGG | 0.321209 | 4.3:-82641282 | MS.gene50005:CDS |
| TGGCGGTGGAATGGGTGATA+TGG | 0.323498 | 4.3:-82641442 | MS.gene50005:CDS |
| TTGTTATTAGGGTTCTTATC+AGG | 0.349663 | 4.3:+82642687 | None:intergenic |
| GTTTGGAGGATTTGTATAAA+GGG | 0.350475 | 4.3:-82641281 | MS.gene50005:CDS |
| TTTCTCTTCCTTTAGGAATT+CGG | 0.359374 | 4.3:-82641367 | MS.gene50005:CDS |
| GGTGGTCATCCTGGTGCATC+TGG | 0.369509 | 4.3:-82641420 | MS.gene50005:CDS |
| GAGAACATTGCCTTGCAGTT+TGG | 0.378422 | 4.3:-82641298 | MS.gene50005:CDS |
| TTCGGGTTTCAAAGACCATT+TGG | 0.392906 | 4.3:-82641462 | MS.gene50005:CDS |
| AGACCATTTGGCGGTGGAAT+GGG | 0.427291 | 4.3:-82641450 | MS.gene50005:CDS |
| ATCGCAAACTTGCTATGAAA+TGG | 0.429662 | 4.3:-82642713 | MS.gene50005:CDS |
| GGTGATATGGGTGGTCATCC+TGG | 0.434210 | 4.3:-82641429 | MS.gene50005:CDS |
| GGCGGTGGAATGGGTGATAT+GGG | 0.438794 | 4.3:-82641441 | MS.gene50005:CDS |
| ATGGTGGACCGACAATGTTC+CGG | 0.441258 | 4.3:-82641524 | MS.gene50005:CDS |
| AAGACCATTTGGCGGTGGAA+TGG | 0.454672 | 4.3:-82641451 | MS.gene50005:CDS |
| ATATGGTGAGGAGGGGTTGA+AGG | 0.458111 | 4.3:-82641592 | MS.gene50005:CDS |
| TCGGAAAATCCACCTGCACC+TGG | 0.462806 | 4.3:+82641555 | None:intergenic |
| AATATGTCATCCGCACTTCT+CGG | 0.475047 | 4.3:+82641495 | None:intergenic |
| CCGCACTTCTCGGATTGAAC+CGG | 0.478831 | 4.3:+82641505 | None:intergenic |
| AACATTGCCTTGCAGTTTGG+AGG | 0.487226 | 4.3:-82641295 | MS.gene50005:CDS |
| GGATTGAACCGGAACATTGT+CGG | 0.505215 | 4.3:+82641516 | None:intergenic |
| AGAGCTGTGTATGATCAATA+TGG | 0.509203 | 4.3:-82641609 | MS.gene50005:CDS |
| CAAGGCAATGTTCTCTCTAT+CGG | 0.510097 | 4.3:+82641306 | None:intergenic |
| GCTGGAATCAGTAACATCTC+TGG | 0.511627 | 4.3:+82641236 | None:intergenic |
| TGGTGCATCTGGCTTTCCGA+GGG | 0.518716 | 4.3:-82641409 | MS.gene50005:CDS |
| CGGAAAATCCACCTGCACCT+GGG | 0.520170 | 4.3:+82641556 | None:intergenic |
| TTTAGGAATTCGGCCGGTGA+AGG | 0.528483 | 4.3:-82641357 | MS.gene50005:CDS |
| CTGGTGCATCTGGCTTTCCG+AGG | 0.535834 | 4.3:-82641410 | MS.gene50005:CDS |
| TTGCATTTCGATCTATCTGA+AGG | 0.539158 | 4.3:+82642760 | None:intergenic |
| CTCGGAAAGCCAGATGCACC+AGG | 0.544371 | 4.3:+82641411 | None:intergenic |
| TCACCCATTCCACCGCCAAA+TGG | 0.551823 | 4.3:+82641447 | None:intergenic |
| GGGTTTCAAAGACCATTTGG+CGG | 0.553824 | 4.3:-82641459 | MS.gene50005:CDS |
| AATTCCTAAAGGAAGAGAAA+AGG | 0.566815 | 4.3:+82641370 | None:intergenic |
| GGAAAATCCACCTGCACCTG+GGG | 0.568173 | 4.3:+82641557 | None:intergenic |
| TTTCAAAGACCATTTGGCGG+TGG | 0.571030 | 4.3:-82641456 | MS.gene50005:CDS |
| TTCACCGGCCGAATTCCTAA+AGG | 0.573122 | 4.3:+82641359 | None:intergenic |
| TATGGTGAGGAGGGGTTGAA+GGG | 0.576990 | 4.3:-82641591 | MS.gene50005:CDS |
| AAACTAGAAAACTCACCCGC+TGG | 0.581970 | 4.3:+82641218 | None:intergenic |
| CACATTGGCAGATCCTTCAC+CGG | 0.582928 | 4.3:+82641344 | None:intergenic |
| TATGATCAATATGGTGAGGA+GGG | 0.591969 | 4.3:-82641600 | MS.gene50005:CDS |
| TACAAATCCTCCAAACTGCA+AGG | 0.594020 | 4.3:+82641288 | None:intergenic |
| TCTTCCTTTAGGAATTCGGC+CGG | 0.603452 | 4.3:-82641363 | MS.gene50005:CDS |
| ATGGTGAGGAGGGGTTGAAG+GGG | 0.612762 | 4.3:-82641590 | MS.gene50005:CDS |
| GGTGGAATGGGTGATATGGG+TGG | 0.613503 | 4.3:-82641438 | MS.gene50005:CDS |
| AGAGATGTTACTGATTCCAG+CGG | 0.648475 | 4.3:-82641234 | MS.gene50005:CDS |
| TCTTTGAAACCCGAAGAACT+CGG | 0.650196 | 4.3:+82641470 | None:intergenic |
| GAGATGTTACTGATTCCAGC+GGG | 0.654951 | 4.3:-82641233 | MS.gene50005:CDS |
| TCATCCCTAAACATTCCCCT+CGG | 0.655585 | 4.3:+82641393 | None:intergenic |
| CGGTCCACCATCACCACCGT+CGG | 0.662709 | 4.3:+82641536 | None:intergenic |
| GGTGCATCTGGCTTTCCGAG+GGG | 0.666004 | 4.3:-82641408 | MS.gene50005:CDS |
| CCGGTTCAATCCGAGAAGTG+CGG | 0.669023 | 4.3:-82641505 | MS.gene50005:CDS |
| AAGGATCTGCCAATGTGATG+AGG | 0.672645 | 4.3:-82641338 | MS.gene50005:CDS |
| GTATGATCAATATGGTGAGG+AGG | 0.684615 | 4.3:-82641601 | MS.gene50005:CDS |
| GAAAATCCACCTGCACCTGG+GGG | 0.693417 | 4.3:+82641558 | None:intergenic |
| TGTGTATGATCAATATGGTG+AGG | 0.703352 | 4.3:-82641604 | MS.gene50005:CDS |
| ATGATCAATATGGTGAGGAG+GGG | 0.712167 | 4.3:-82641599 | MS.gene50005:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTGATAATTTTAATT+GGG | - | chr4.3:82641426-82641445 | MS.gene50005:CDS | 10.0% |
| !!! | TCAATTTTGATAATTTTAAT+TGG | - | chr4.3:82641425-82641444 | MS.gene50005:CDS | 10.0% |
| !!! | TGTGTTTAATTTTATGATTT+TGG | - | chr4.3:82641969-82641988 | MS.gene50005:intron | 15.0% |
| !!! | TTGTAAAGTTTTGATTTTTT+GGG | - | chr4.3:82641462-82641481 | MS.gene50005:CDS | 15.0% |
| !!! | TTTGTAAAGTTTTGATTTTT+TGG | - | chr4.3:82641461-82641480 | MS.gene50005:CDS | 15.0% |
| !!! | TTTTATGATTTTGGATAATT+TGG | - | chr4.3:82641978-82641997 | MS.gene50005:intron | 15.0% |
| !!! | ATTGTTGATTTTGGATAATT+TGG | - | chr4.3:82641535-82641554 | MS.gene50005:CDS | 20.0% |
| !!! | TGTAAAGTTTTGATTTTTTG+GGG | - | chr4.3:82641463-82641482 | MS.gene50005:CDS | 20.0% |
| !!! | TGTGTTTTTATTGTTGATTT+TGG | - | chr4.3:82641526-82641545 | MS.gene50005:CDS | 20.0% |
| !!! | TTGGATAATTTGGAAATTTT+GGG | - | chr4.3:82641545-82641564 | MS.gene50005:CDS | 20.0% |
| !!! | TTGTTATTTTCTTGTGATTT+AGG | - | chr4.3:82642174-82642193 | MS.gene50005:intron | 20.0% |
| !!! | TTTGGATAATTTGGAAATTT+TGG | - | chr4.3:82641544-82641563 | MS.gene50005:CDS | 20.0% |
| !!! | TTTTTGTTTTGATTGTGATT+AGG | - | chr4.3:82642215-82642234 | MS.gene50005:intron | 20.0% |
| ! | TTAGGATTACTTGGAAATTT+CGG | - | chr4.3:82642060-82642079 | MS.gene50005:intron | 25.0% |
| !! | TCTTGTGATTTAGAATCATT+TGG | - | chr4.3:82642322-82642341 | MS.gene50005:intron | 25.0% |
| !! | TGGATAATTTGGAAATTTTG+GGG | - | chr4.3:82641546-82641565 | MS.gene50005:CDS | 25.0% |
| !! | TTAGAATCATTTGGAATTGT+TGG | - | chr4.3:82642331-82642350 | MS.gene50005:intron | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+AGG | - | chr4.3:82641830-82641849 | MS.gene50005:intron | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+TGG | - | chr4.3:82641830-82641849 | MS.gene50005:intron | 25.0% |
| !! | TTTGGATAATTTGGAATTGT+GGG | - | chr4.3:82641987-82642006 | MS.gene50005:intron | 25.0% |
| !! | TTTTGTGATTTTGGATCATT+TGG | - | chr4.3:82641907-82641926 | MS.gene50005:intron | 25.0% |
| !!! | AGGTTTACAATTTTAGCTTA+TGG | - | chr4.3:82641875-82641894 | MS.gene50005:intron | 25.0% |
| !!! | ATTTGGAATTGTGAAGTTTT+AGG | - | chr4.3:82641775-82641794 | MS.gene50005:intron | 25.0% |
| !!! | GATCATTTGTTTGATTTTTG+GGG | - | chr4.3:82641622-82641641 | MS.gene50005:CDS | 25.0% |
| !!! | GGATCATTTGTTTGATTTTT+GGG | - | chr4.3:82641621-82641640 | MS.gene50005:CDS | 25.0% |
| !!! | GGTGTTTAATTTTGTGTTTT+TGG | - | chr4.3:82641588-82641607 | MS.gene50005:CDS | 25.0% |
| !!! | GGTTTACAATTTTAGCTTAT+GGG | - | chr4.3:82641876-82641895 | MS.gene50005:intron | 25.0% |
| !!! | GTTTACAATTTTAGCTTATG+GGG | - | chr4.3:82641877-82641896 | MS.gene50005:intron | 25.0% |
| !!! | GTTTTTTTCGTTGTTGATTT+TGG | - | chr4.3:82641683-82641702 | MS.gene50005:intron | 25.0% |
| !!! | TCTGGAAATCTTCATTTTTT+TGG | + | chr4.3:82642762-82642781 | None:intergenic | 25.0% |
| !!! | TGAGATGTTTTTGAAATGTT+GGG | - | chr4.3:82642281-82642300 | MS.gene50005:intron | 25.0% |
| !!! | TGGATCATTTGTTTGATTTT+TGG | - | chr4.3:82641620-82641639 | MS.gene50005:CDS | 25.0% |
| !!! | TGTGTTTTTCTTGTTGATTT+TGG | - | chr4.3:82641600-82641619 | MS.gene50005:CDS | 25.0% |
| !!! | TTTGATTTTTTGGGGTTTTT+GGG | - | chr4.3:82641471-82641490 | MS.gene50005:CDS | 25.0% |
| !!! | TTTGGAATTGTGAAGTTTTA+GGG | - | chr4.3:82641776-82641795 | MS.gene50005:intron | 25.0% |
| !!! | TTTTGATTTTTTGGGGTTTT+TGG | - | chr4.3:82641470-82641489 | MS.gene50005:CDS | 25.0% |
| !!! | TTTTGGATAATTTGGAATTG+TGG | - | chr4.3:82641986-82642005 | MS.gene50005:intron | 25.0% |
| AATTCCTAAAGGAAGAGAAA+AGG | + | chr4.3:82642646-82642665 | None:intergenic | 30.0% | |
| AGTTTGGAGGATTTGTATAA+AGG | - | chr4.3:82642731-82642750 | MS.gene50005:CDS | 30.0% | |
| GTTTGGAGGATTTGTATAAA+GGG | - | chr4.3:82642732-82642751 | MS.gene50005:CDS | 30.0% | |
| TAGGATTACTTGGAAATTTC+GGG | - | chr4.3:82642061-82642080 | MS.gene50005:intron | 30.0% | |
| ! | AGGGTTACAATTTGGAATTA+AGG | - | chr4.3:82641944-82641963 | MS.gene50005:intron | 30.0% |
| ! | AGTGATTTCGATTTGTGAAT+AGG | - | chr4.3:82642361-82642380 | MS.gene50005:intron | 30.0% |
| ! | ATTTGGAATTGTGAAGTTTC+AGG | - | chr4.3:82641924-82641943 | MS.gene50005:intron | 30.0% |
| ! | GGATAATTTGGAAATTTTGG+GGG | - | chr4.3:82641547-82641566 | MS.gene50005:CDS | 30.0% |
| ! | GGGTTACAATTTGAAATGTT+GGG | - | chr4.3:82642142-82642161 | MS.gene50005:intron | 30.0% |
| ! | GGTTACAATTTGAAATGTTG+GGG | - | chr4.3:82642143-82642162 | MS.gene50005:intron | 30.0% |
| ! | GGTTACAATTTGGAATTATG+AGG | - | chr4.3:82642083-82642102 | MS.gene50005:intron | 30.0% |
| ! | GTTACAATTTGAAATGTTGG+GGG | - | chr4.3:82642144-82642163 | MS.gene50005:intron | 30.0% |
| ! | GTTGCATAATTTGGAATGTT+GGG | - | chr4.3:82641644-82641663 | MS.gene50005:intron | 30.0% |
| ! | TCTTGTGATTTAGGATCATT+TGG | - | chr4.3:82642183-82642202 | MS.gene50005:intron | 30.0% |
| ! | TCTTGTGATTTAGGATTACT+TGG | - | chr4.3:82642051-82642070 | MS.gene50005:intron | 30.0% |
| ! | TGGGTTACAATTTGAAATGT+TGG | - | chr4.3:82642141-82642160 | MS.gene50005:intron | 30.0% |
| ! | TTCAGAGATTTGCTTGAATT+TGG | + | chr4.3:82641366-82641385 | None:intergenic | 30.0% |
| ! | TTCTTGTGATTTTGGACATT+TGG | - | chr4.3:82641838-82641857 | MS.gene50005:intron | 30.0% |
| ! | TTGCATAATTTGGAATGTTG+GGG | - | chr4.3:82641645-82641664 | MS.gene50005:intron | 30.0% |
| ! | TTGGATCATTTGGACATTTT+GGG | - | chr4.3:82641702-82641721 | MS.gene50005:intron | 30.0% |
| ! | TTGTTATTAGGGTTCTTATC+AGG | + | chr4.3:82641329-82641348 | None:intergenic | 30.0% |
| ! | TTTCTCTTCCTTTAGGAATT+CGG | - | chr4.3:82642646-82642665 | MS.gene50005:CDS | 30.0% |
| ! | TTTGGAATTGTGAAGTTTCA+GGG | - | chr4.3:82641925-82641944 | MS.gene50005:intron | 30.0% |
| ! | TTTGGATCAGTTGGATTTTT+GGG | - | chr4.3:82642122-82642141 | MS.gene50005:intron | 30.0% |
| ! | TTTGGATCATTTGGACATTT+TGG | - | chr4.3:82641701-82641720 | MS.gene50005:intron | 30.0% |
| ! | TTTTGGATCAGTTGGATTTT+TGG | - | chr4.3:82642121-82642140 | MS.gene50005:intron | 30.0% |
| !! | CAGCATCTTTCTTGTTATTA+GGG | + | chr4.3:82641340-82641359 | None:intergenic | 30.0% |
| !! | GGTGTTTGATTTTGTGATTT+TGG | - | chr4.3:82641898-82641917 | MS.gene50005:intron | 30.0% |
| !! | GTGTTTGATTTTGGATCATT+TGG | - | chr4.3:82641758-82641777 | MS.gene50005:intron | 30.0% |
| !! | TCAGCATCTTTCTTGTTATT+AGG | + | chr4.3:82641341-82641360 | None:intergenic | 30.0% |
| !!! | ATTTGGAGTTTTGAGGTTTT+AGG | - | chr4.3:82641855-82641874 | MS.gene50005:intron | 30.0% |
| !!! | ATTTTTGGGGTTGCATAATT+TGG | - | chr4.3:82641635-82641654 | MS.gene50005:intron | 30.0% |
| !!! | GAAGTTTTAGGGTTACAATT+TGG | - | chr4.3:82641787-82641806 | MS.gene50005:intron | 30.0% |
| !!! | GAGATGTTTTTGAAATGTTG+GGG | - | chr4.3:82642282-82642301 | MS.gene50005:intron | 30.0% |
| !!! | GGAAATCTTCATTTTTTTGG+TGG | + | chr4.3:82642759-82642778 | None:intergenic | 30.0% |
| !!! | GTGAGATGTTTTTGAAATGT+TGG | - | chr4.3:82642280-82642299 | MS.gene50005:intron | 30.0% |
| !!! | GTTGTTGATTTTGGATCATT+TGG | - | chr4.3:82641692-82641711 | MS.gene50005:intron | 30.0% |
| !!! | TTGATTTTTTGGGGTTTTTG+GGG | - | chr4.3:82641472-82641491 | MS.gene50005:CDS | 30.0% |
| !!! | TTTTGTGTTTTTGGATCAGT+TGG | - | chr4.3:82642113-82642132 | MS.gene50005:intron | 30.0% |
| AACCAATCCAAATTGTAACC+CGG | + | chr4.3:82642018-82642037 | None:intergenic | 35.0% | |
| AGAGCTGTGTATGATCAATA+TGG | - | chr4.3:82642404-82642423 | MS.gene50005:intron | 35.0% | |
| AGGATTACTTGGAAATTTCG+GGG | - | chr4.3:82642062-82642081 | MS.gene50005:intron | 35.0% | |
| GAAATTTCGGGGTTACAATT+TGG | - | chr4.3:82642073-82642092 | MS.gene50005:intron | 35.0% | |
| GAAGTTTCAGGGTTACAATT+TGG | - | chr4.3:82641936-82641955 | MS.gene50005:intron | 35.0% | |
| GGGGTACAATTTGAATTGAT+GGG | - | chr4.3:82641566-82641585 | MS.gene50005:CDS | 35.0% | |
| GGGTACAATTTGAATTGATG+GGG | - | chr4.3:82641567-82641586 | MS.gene50005:CDS | 35.0% | |
| TATGATCAATATGGTGAGGA+GGG | - | chr4.3:82642413-82642432 | MS.gene50005:intron | 35.0% | |
| TGTGTATGATCAATATGGTG+AGG | - | chr4.3:82642409-82642428 | MS.gene50005:intron | 35.0% | |
| TTGCATTTCGATCTATCTGA+AGG | + | chr4.3:82641256-82641275 | None:intergenic | 35.0% | |
| ! | ACATATTTTCCGAGTTCTTC+GGG | - | chr4.3:82642534-82642553 | MS.gene50005:intron | 35.0% |
| ! | AGGGTTACAATTTGGAATGA+TGG | - | chr4.3:82641795-82641814 | MS.gene50005:intron | 35.0% |
| ! | ATGACCTTTTCTCTTCCTTT+AGG | - | chr4.3:82642639-82642658 | MS.gene50005:intron | 35.0% |
| ! | GACATATTTTCCGAGTTCTT+CGG | - | chr4.3:82642533-82642552 | MS.gene50005:intron | 35.0% |
| ! | GGGTTACAATTTGGAATGAT+GGG | - | chr4.3:82641796-82641815 | MS.gene50005:intron | 35.0% |
| ! | GGTTACAATTTGGAATGATG+GGG | - | chr4.3:82641797-82641816 | MS.gene50005:intron | 35.0% |
| ! | GGTTGCATAATTTGGAATGT+TGG | - | chr4.3:82641643-82641662 | MS.gene50005:intron | 35.0% |
| ! | TGCATAATTTGGAATGTTGG+GGG | - | chr4.3:82641646-82641665 | MS.gene50005:intron | 35.0% |
| ! | TGGATCATTTGGACATTTTG+GGG | - | chr4.3:82641703-82641722 | MS.gene50005:intron | 35.0% |
| !! | ATCGCAAACTTGCTATGAAA+TGG | - | chr4.3:82641300-82641319 | MS.gene50005:CDS | 35.0% |
| !! | TTTGGAATTGTGGGTTTTTC+CGG | - | chr4.3:82641996-82642015 | MS.gene50005:intron | 35.0% |
| !! | TTTGGACATTTGGAGTTTTG+AGG | - | chr4.3:82641848-82641867 | MS.gene50005:intron | 35.0% |
| !!! | TGCAAGCAATTTTAGCTGAT+GGG | - | chr4.3:82641735-82641754 | MS.gene50005:intron | 35.0% |
| !!! | TTGCAAGCAATTTTAGCTGA+TGG | - | chr4.3:82641734-82641753 | MS.gene50005:intron | 35.0% |
| !!! | TTGGACATTTTGGGGTTTTT+GGG | - | chr4.3:82641711-82641730 | MS.gene50005:intron | 35.0% |
| !!! | TTTGGACATTTTGGGGTTTT+TGG | - | chr4.3:82641710-82641729 | MS.gene50005:intron | 35.0% |
| AATATGTCATCCGCACTTCT+CGG | + | chr4.3:82642521-82642540 | None:intergenic | 40.0% | |
| ATGATCAATATGGTGAGGAG+GGG | - | chr4.3:82642414-82642433 | MS.gene50005:intron | 40.0% | |
| CAAGGCAATGTTCTCTCTAT+CGG | + | chr4.3:82642710-82642729 | None:intergenic | 40.0% | |
| GTATGATCAATATGGTGAGG+AGG | - | chr4.3:82642412-82642431 | MS.gene50005:intron | 40.0% | |
| TACAAATCCTCCAAACTGCA+AGG | + | chr4.3:82642728-82642747 | None:intergenic | 40.0% | |
| TGATCATACACCTCTCTCTT+TGG | + | chr4.3:82642255-82642274 | None:intergenic | 40.0% | |
| TTCCGGGTTACAATTTGGAT+TGG | - | chr4.3:82642013-82642032 | MS.gene50005:intron | 40.0% | |
| ! | AGAGAGGTGTATGATCAGTA+TGG | - | chr4.3:82642258-82642277 | MS.gene50005:intron | 40.0% |
| ! | ATAATTTGGAATGTTGGGGG+TGG | - | chr4.3:82641649-82641668 | MS.gene50005:intron | 40.0% |
| ! | GGGGGTACAATTTGAATTGA+TGG | - | chr4.3:82641565-82641584 | MS.gene50005:CDS | 40.0% |
| ! | GGGGTTGTAATTTGCATGTT+GGG | - | chr4.3:82641491-82641510 | MS.gene50005:CDS | 40.0% |
| ! | GGTTTTTCCGGGTTACAATT+TGG | - | chr4.3:82642008-82642027 | MS.gene50005:intron | 40.0% |
| ! | TCATACACAGCTCTCTTTTG+TGG | + | chr4.3:82642398-82642417 | None:intergenic | 40.0% |
| ! | TGCACTTTTCCTCATCACAT+TGG | + | chr4.3:82642687-82642706 | None:intergenic | 40.0% |
| ! | TGGGGTTGTAATTTGCATGT+TGG | - | chr4.3:82641490-82641509 | MS.gene50005:CDS | 40.0% |
| ! | TTCGGGTTTCAAAGACCATT+TGG | - | chr4.3:82642551-82642570 | MS.gene50005:intron | 40.0% |
| ! | TTGGAATTGTGGGTTTTTCC+GGG | - | chr4.3:82641997-82642016 | MS.gene50005:intron | 40.0% |
| !! | AGAGATGTTACTGATTCCAG+CGG | - | chr4.3:82642779-82642798 | MS.gene50005:CDS | 40.0% |
| !! | TCTTTGAAACCCGAAGAACT+CGG | + | chr4.3:82642546-82642565 | None:intergenic | 40.0% |
| !!! | GCAAGCAATTTTAGCTGATG+GGG | - | chr4.3:82641736-82641755 | MS.gene50005:intron | 40.0% |
| AACATTGCCTTGCAGTTTGG+AGG | - | chr4.3:82642718-82642737 | MS.gene50005:CDS | 45.0% | |
| AAGGATCTGCCAATGTGATG+AGG | - | chr4.3:82642675-82642694 | MS.gene50005:CDS | 45.0% | |
| CTTTCCGAGGGGAATGTTTA+GGG | - | chr4.3:82642616-82642635 | MS.gene50005:intron | 45.0% | |
| GAGAACATTGCCTTGCAGTT+TGG | - | chr4.3:82642715-82642734 | MS.gene50005:CDS | 45.0% | |
| GAGTGATCAACCAAAGAGAG+AGG | - | chr4.3:82642242-82642261 | MS.gene50005:intron | 45.0% | |
| GCTGGAATCAGTAACATCTC+TGG | + | chr4.3:82642780-82642799 | None:intergenic | 45.0% | |
| GGATTGAACCGGAACATTGT+CGG | + | chr4.3:82642500-82642519 | None:intergenic | 45.0% | |
| GGGTTTCAAAGACCATTTGG+CGG | - | chr4.3:82642554-82642573 | MS.gene50005:intron | 45.0% | |
| TCATCCCTAAACATTCCCCT+CGG | + | chr4.3:82642623-82642642 | None:intergenic | 45.0% | |
| TTTCAAAGACCATTTGGCGG+TGG | - | chr4.3:82642557-82642576 | MS.gene50005:intron | 45.0% | |
| ! | TCTTCCTTTAGGAATTCGGC+CGG | - | chr4.3:82642650-82642669 | MS.gene50005:CDS | 45.0% |
| !! | GAGATGTTACTGATTCCAGC+GGG | - | chr4.3:82642780-82642799 | MS.gene50005:CDS | 45.0% |
| !! | GCTGATGGGGTGTTTGATTT+TGG | - | chr4.3:82641749-82641768 | MS.gene50005:intron | 45.0% |
| AAGACCATTTGGCGGTGGAA+TGG | - | chr4.3:82642562-82642581 | MS.gene50005:intron | 50.0% | |
| AGACCATTTGGCGGTGGAAT+GGG | - | chr4.3:82642563-82642582 | MS.gene50005:intron | 50.0% | |
| ATATGGTGAGGAGGGGTTGA+AGG | - | chr4.3:82642421-82642440 | MS.gene50005:intron | 50.0% | |
| CACATTGGCAGATCCTTCAC+CGG | + | chr4.3:82642672-82642691 | None:intergenic | 50.0% | |
| GCTTTCCGAGGGGAATGTTT+AGG | - | chr4.3:82642615-82642634 | MS.gene50005:intron | 50.0% | |
| TATGGTGAGGAGGGGTTGAA+GGG | - | chr4.3:82642422-82642441 | MS.gene50005:intron | 50.0% | |
| TTCACCGGCCGAATTCCTAA+AGG | + | chr4.3:82642657-82642676 | None:intergenic | 50.0% | |
| TTTAGGAATTCGGCCGGTGA+AGG | - | chr4.3:82642656-82642675 | MS.gene50005:CDS | 50.0% | |
| !! | ATGGTGGACCGACAATGTTC+CGG | - | chr4.3:82642489-82642508 | MS.gene50005:intron | 50.0% |
| ATGGTGAGGAGGGGTTGAAG+GGG | - | chr4.3:82642423-82642442 | MS.gene50005:intron | 55.0% | |
| CCGCACTTCTCGGATTGAAC+CGG | + | chr4.3:82642511-82642530 | None:intergenic | 55.0% | |
| CCGGTTCAATCCGAGAAGTG+CGG | - | chr4.3:82642508-82642527 | MS.gene50005:intron | 55.0% | |
| CGGAAAATCCACCTGCACCT+GGG | + | chr4.3:82642460-82642479 | None:intergenic | 55.0% | |
| GAAAATCCACCTGCACCTGG+GGG | + | chr4.3:82642458-82642477 | None:intergenic | 55.0% | |
| GGAAAATCCACCTGCACCTG+GGG | + | chr4.3:82642459-82642478 | None:intergenic | 55.0% | |
| GGCGGTGGAATGGGTGATAT+GGG | - | chr4.3:82642572-82642591 | MS.gene50005:intron | 55.0% | |
| GGTGATATGGGTGGTCATCC+TGG | - | chr4.3:82642584-82642603 | MS.gene50005:intron | 55.0% | |
| GGTGGAATGGGTGATATGGG+TGG | - | chr4.3:82642575-82642594 | MS.gene50005:intron | 55.0% | |
| TCACCCATTCCACCGCCAAA+TGG | + | chr4.3:82642569-82642588 | None:intergenic | 55.0% | |
| TCGGAAAATCCACCTGCACC+TGG | + | chr4.3:82642461-82642480 | None:intergenic | 55.0% | |
| TGGCGGTGGAATGGGTGATA+TGG | - | chr4.3:82642571-82642590 | MS.gene50005:intron | 55.0% | |
| ! | GGATTTTCCGACGGTGGTGA+TGG | - | chr4.3:82642470-82642489 | MS.gene50005:intron | 55.0% |
| !! | GGTGCAGGTGGATTTTCCGA+CGG | - | chr4.3:82642461-82642480 | MS.gene50005:intron | 55.0% |
| !! | TGGTGCATCTGGCTTTCCGA+GGG | - | chr4.3:82642604-82642623 | MS.gene50005:intron | 55.0% |
| !!! | TTTTCCGACGGTGGTGATGG+TGG | - | chr4.3:82642473-82642492 | MS.gene50005:intron | 55.0% |
| CTCGGAAAGCCAGATGCACC+AGG | + | chr4.3:82642605-82642624 | None:intergenic | 60.0% | |
| GGTGGTCATCCTGGTGCATC+TGG | - | chr4.3:82642593-82642612 | MS.gene50005:intron | 60.0% | |
| !! | CTGGTGCATCTGGCTTTCCG+AGG | - | chr4.3:82642603-82642622 | MS.gene50005:intron | 60.0% |
| !! | GCAGGTGGATTTTCCGACGG+TGG | - | chr4.3:82642464-82642483 | MS.gene50005:intron | 60.0% |
| !! | GGTGCATCTGGCTTTCCGAG+GGG | - | chr4.3:82642605-82642624 | MS.gene50005:intron | 60.0% |
| AATCCACCTGCACCTGGGGG+AGG | + | chr4.3:82642455-82642474 | None:intergenic | 65.0% | |
| CGGTCCACCATCACCACCGT+CGG | + | chr4.3:82642480-82642499 | None:intergenic | 65.0% | |
| AAGGGGCAGATGCCTCCCCC+AGG | - | chr4.3:82642440-82642459 | MS.gene50005:intron | 70.0% | |
| ATGCCTCCCCCAGGTGCAGG+TGG | - | chr4.3:82642449-82642468 | MS.gene50005:intron | 70.0% | |
| CAGATGCCTCCCCCAGGTGC+AGG | - | chr4.3:82642446-82642465 | MS.gene50005:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82641230 | 82642805 | 82641230 | ID=MS.gene50005 |
| chr4.3 | mRNA | 82641230 | 82642805 | 82641230 | ID=MS.gene50005.t1;Parent=MS.gene50005 |
| chr4.3 | exon | 82642641 | 82642805 | 82642641 | ID=MS.gene50005.t1.exon1;Parent=MS.gene50005.t1 |
| chr4.3 | CDS | 82642641 | 82642805 | 82642641 | ID=cds.MS.gene50005.t1;Parent=MS.gene50005.t1 |
| chr4.3 | exon | 82641230 | 82641652 | 82641230 | ID=MS.gene50005.t1.exon2;Parent=MS.gene50005.t1 |
| chr4.3 | CDS | 82641230 | 82641652 | 82641230 | ID=cds.MS.gene50005.t1;Parent=MS.gene50005.t1 |
| Gene Sequence |
| Protein sequence |
