Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31609.t1 | XP_003588551.1 | 96.2 | 236 | 9 | 0 | 31 | 266 | 150 | 385 | 1.60E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31609.t1 | Q08298 | 58.1 | 241 | 97 | 4 | 28 | 265 | 152 | 391 | 1.2e-74 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31609.t1 | G7I4D4 | 96.2 | 236 | 9 | 0 | 31 | 266 | 150 | 385 | 1.2e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene31609 | 0.890522 | 9.14E-74 | -1.69E-46 |
| MS.gene049151 | MS.gene31609 | 0.85879 | 6.47E-63 | -1.69E-46 |
| MS.gene049153 | MS.gene31609 | 0.877305 | 6.99E-69 | -1.69E-46 |
| MS.gene049233 | MS.gene31609 | 0.833943 | 3.99E-56 | -1.69E-46 |
| MS.gene049260 | MS.gene31609 | 0.863507 | 2.37E-64 | -1.69E-46 |
| MS.gene049346 | MS.gene31609 | 0.823851 | 1.11E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene31609 | 0.837108 | 6.31E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene31609 | 0.845888 | 3.07E-59 | -1.69E-46 |
| MS.gene049910 | MS.gene31609 | 0.825941 | 3.56E-54 | -1.69E-46 |
| MS.gene049915 | MS.gene31609 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene31609 | 0.809228 | 2.10E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene31609 | 0.856178 | 3.83E-62 | -1.69E-46 |
| MS.gene050227 | MS.gene31609 | 0.838413 | 2.92E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene31609 | 0.841324 | 5.09E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene31609 | 0.828025 | 1.13E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene31609 | -0.806384 | 8.44E-50 | -1.69E-46 |
| MS.gene050516 | MS.gene31609 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene31609 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene31609 | -0.819615 | 1.06E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene31609 | 0.846719 | 1.82E-59 | -1.69E-46 |
| MS.gene050680 | MS.gene31609 | 0.848595 | 5.54E-60 | -1.69E-46 |
| MS.gene050762 | MS.gene31609 | 0.836396 | 9.59E-57 | -1.69E-46 |
| MS.gene050763 | MS.gene31609 | 0.839807 | 1.27E-57 | -1.69E-46 |
| MS.gene050787 | MS.gene31609 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene31609 | 0.811144 | 8.11E-51 | -1.69E-46 |
| MS.gene050900 | MS.gene31609 | 0.816989 | 4.16E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene31609 | -0.823021 | 1.73E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene31609 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene31609 | 0.870853 | 1.07E-66 | -1.69E-46 |
| MS.gene051983 | MS.gene31609 | 0.856189 | 3.81E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene31609 | -0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene31609 | 0.822332 | 2.51E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene31609 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene31609 | 0.811394 | 7.16E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene31609 | 0.831378 | 1.73E-55 | -1.69E-46 |
| MS.gene052255 | MS.gene31609 | 0.848532 | 5.77E-60 | -1.69E-46 |
| MS.gene052340 | MS.gene31609 | 0.824664 | 7.14E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene31609 | 0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene31609 | 0.82751 | 1.50E-54 | -1.69E-46 |
| MS.gene05316 | MS.gene31609 | 0.822551 | 2.23E-53 | -1.69E-46 |
| MS.gene053184 | MS.gene31609 | 0.821346 | 4.24E-53 | -1.69E-46 |
| MS.gene053204 | MS.gene31609 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene31609 | 0.835766 | 1.39E-56 | -1.69E-46 |
| MS.gene053555 | MS.gene31609 | 0.844423 | 7.63E-59 | -1.69E-46 |
| MS.gene053557 | MS.gene31609 | 0.802245 | 6.15E-49 | -1.69E-46 |
| MS.gene053577 | MS.gene31609 | 0.819493 | 1.13E-52 | -1.69E-46 |
| MS.gene053584 | MS.gene31609 | 0.824136 | 9.51E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene31609 | 0.860406 | 2.11E-63 | -1.69E-46 |
| MS.gene053928 | MS.gene31609 | 0.820102 | 8.19E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene31609 | 0.808413 | 3.14E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene31609 | 0.823501 | 1.34E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene31609 | 0.818685 | 1.72E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene31609 | 0.808573 | 2.90E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene31609 | 0.850011 | 2.24E-60 | -1.69E-46 |
| MS.gene054184 | MS.gene31609 | 0.851682 | 7.57E-61 | -1.69E-46 |
| MS.gene054185 | MS.gene31609 | 0.849496 | 3.12E-60 | -1.69E-46 |
| MS.gene054379 | MS.gene31609 | 0.852773 | 3.71E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene31609 | 0.828221 | 1.01E-54 | -1.69E-46 |
| MS.gene054542 | MS.gene31609 | 0.83129 | 1.82E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene31609 | 0.814698 | 1.35E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene31609 | 0.843922 | 1.04E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene31609 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene31609 | 0.811255 | 7.67E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene31609 | 0.840564 | 8.06E-58 | -1.69E-46 |
| MS.gene055358 | MS.gene31609 | 0.841822 | 3.76E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene31609 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene31609 | 0.85424 | 1.40E-61 | -1.69E-46 |
| MS.gene055666 | MS.gene31609 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene31609 | 0.829489 | 5.00E-55 | -1.69E-46 |
| MS.gene055859 | MS.gene31609 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene31609 | 0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene31609 | 0.805515 | 1.29E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene31609 | 0.816513 | 5.32E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene31609 | 0.849847 | 2.49E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene31609 | 0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene057394 | MS.gene31609 | 0.811819 | 5.79E-51 | -1.69E-46 |
| MS.gene057395 | MS.gene31609 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene31609 | 0.815352 | 9.66E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene31609 | 0.828146 | 1.06E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene31609 | 0.816107 | 6.56E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene31609 | 0.826313 | 2.90E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene31609 | 0.86292 | 3.60E-64 | -1.69E-46 |
| MS.gene057690 | MS.gene31609 | 0.809169 | 2.16E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene31609 | 0.833277 | 5.85E-56 | -1.69E-46 |
| MS.gene057754 | MS.gene31609 | 0.846514 | 2.07E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene31609 | 0.838695 | 2.47E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene31609 | 0.838329 | 3.07E-57 | -1.69E-46 |
| MS.gene058139 | MS.gene31609 | 0.808076 | 3.70E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene31609 | 0.850509 | 1.62E-60 | -1.69E-46 |
| MS.gene05842 | MS.gene31609 | 0.801891 | 7.27E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene31609 | 0.838752 | 2.39E-57 | -1.69E-46 |
| MS.gene058749 | MS.gene31609 | 0.81081 | 9.58E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene31609 | 0.831759 | 1.39E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene31609 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene31609 | 0.823939 | 1.06E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene31609 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene31609 | 0.839499 | 1.53E-57 | -1.69E-46 |
| MS.gene059128 | MS.gene31609 | 0.880064 | 7.47E-70 | -1.69E-46 |
| MS.gene059161 | MS.gene31609 | 0.818628 | 1.77E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene31609 | 0.840584 | 7.96E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene31609 | 0.844734 | 6.29E-59 | -1.69E-46 |
| MS.gene059420 | MS.gene31609 | 0.830889 | 2.28E-55 | -1.69E-46 |
| MS.gene059421 | MS.gene31609 | 0.843675 | 1.21E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene31609 | 0.807872 | 4.09E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene31609 | 0.828886 | 7.01E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene31609 | 0.861529 | 9.62E-64 | -1.69E-46 |
| MS.gene060314 | MS.gene31609 | 0.804733 | 1.87E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene31609 | 0.80415 | 2.48E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene31609 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene060480 | MS.gene31609 | 0.806826 | 6.81E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene31609 | 0.834043 | 3.76E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene31609 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene31609 | 0.814601 | 1.42E-51 | -1.69E-46 |
| MS.gene060943 | MS.gene31609 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene060986 | MS.gene31609 | 0.806163 | 9.40E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene31609 | 0.827536 | 1.48E-54 | -1.69E-46 |
| MS.gene061002 | MS.gene31609 | 0.817155 | 3.82E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene31609 | 0.830182 | 3.39E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene31609 | -0.835682 | 1.46E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene31609 | 0.819301 | 1.25E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31609.t1 | MTR_1g008500 | 82.000 | 300 | 20 | 3 | 1 | 266 | 86 | 385 | 1.75e-173 | 484 |
| MS.gene31609.t1 | MTR_1g008590 | 75.096 | 261 | 55 | 3 | 6 | 266 | 75 | 325 | 2.37e-141 | 400 |
| MS.gene31609.t1 | MTR_0312s0030 | 74.060 | 266 | 59 | 3 | 1 | 266 | 70 | 325 | 5.39e-141 | 399 |
| MS.gene31609.t1 | MTR_1g007520 | 74.060 | 266 | 59 | 3 | 1 | 266 | 70 | 325 | 5.39e-141 | 399 |
| MS.gene31609.t1 | MTR_1g008510 | 79.832 | 238 | 43 | 2 | 31 | 266 | 92 | 326 | 8.43e-138 | 391 |
| MS.gene31609.t1 | MTR_1g008560 | 72.388 | 268 | 67 | 3 | 3 | 266 | 66 | 330 | 1.07e-134 | 383 |
| MS.gene31609.t1 | MTR_1g008530 | 78.995 | 219 | 45 | 1 | 49 | 266 | 6 | 224 | 3.17e-128 | 363 |
| MS.gene31609.t1 | MTR_1g008470 | 73.617 | 235 | 59 | 3 | 32 | 266 | 69 | 300 | 2.84e-125 | 358 |
| MS.gene31609.t1 | MTR_1g008450 | 72.650 | 234 | 61 | 3 | 33 | 266 | 83 | 313 | 1.82e-119 | 344 |
| MS.gene31609.t1 | MTR_1g008460 | 63.878 | 263 | 86 | 4 | 4 | 266 | 44 | 297 | 2.13e-115 | 333 |
| MS.gene31609.t1 | MTR_3g109490 | 57.407 | 270 | 102 | 5 | 2 | 264 | 57 | 320 | 1.85e-108 | 317 |
| MS.gene31609.t1 | MTR_1g008580 | 81.871 | 171 | 31 | 0 | 95 | 265 | 1 | 171 | 6.70e-104 | 299 |
| MS.gene31609.t1 | MTR_4g069680 | 43.304 | 224 | 122 | 4 | 47 | 266 | 65 | 287 | 4.36e-62 | 197 |
| MS.gene31609.t1 | MTR_3g116410 | 43.750 | 224 | 121 | 4 | 47 | 266 | 54 | 276 | 3.94e-60 | 192 |
| MS.gene31609.t1 | MTR_3g107830 | 43.304 | 224 | 122 | 3 | 47 | 266 | 34 | 256 | 8.12e-60 | 191 |
| MS.gene31609.t1 | MTR_3g116380 | 43.498 | 223 | 118 | 5 | 47 | 264 | 82 | 301 | 1.41e-58 | 189 |
| MS.gene31609.t1 | MTR_3g116320 | 41.284 | 218 | 118 | 5 | 52 | 264 | 474 | 686 | 2.51e-47 | 167 |
| MS.gene31609.t1 | MTR_3g116270 | 38.991 | 218 | 123 | 5 | 52 | 264 | 292 | 504 | 1.18e-46 | 163 |
| MS.gene31609.t1 | MTR_4g069570 | 36.986 | 219 | 128 | 6 | 52 | 264 | 120 | 334 | 1.37e-44 | 153 |
| MS.gene31609.t1 | MTR_4g069040 | 35.865 | 237 | 141 | 7 | 34 | 264 | 277 | 508 | 1.09e-43 | 155 |
| MS.gene31609.t1 | MTR_8g064500 | 36.530 | 219 | 129 | 5 | 52 | 265 | 159 | 372 | 1.18e-41 | 147 |
| MS.gene31609.t1 | MTR_4g069550 | 36.986 | 219 | 128 | 6 | 52 | 264 | 247 | 461 | 1.69e-41 | 148 |
| MS.gene31609.t1 | MTR_4g069520 | 36.530 | 219 | 129 | 6 | 52 | 264 | 507 | 721 | 1.69e-39 | 145 |
| MS.gene31609.t1 | MTR_4g069520 | 36.530 | 219 | 129 | 6 | 52 | 264 | 493 | 707 | 2.07e-39 | 145 |
| MS.gene31609.t1 | MTR_8g064560 | 35.160 | 219 | 132 | 5 | 52 | 265 | 412 | 625 | 3.75e-38 | 141 |
| MS.gene31609.t1 | MTR_8g064530 | 34.703 | 219 | 133 | 6 | 52 | 265 | 429 | 642 | 2.37e-36 | 136 |
| MS.gene31609.t1 | MTR_5g034320 | 33.180 | 217 | 137 | 5 | 52 | 264 | 415 | 627 | 2.95e-36 | 136 |
| MS.gene31609.t1 | MTR_3g078090 | 36.649 | 191 | 114 | 4 | 79 | 265 | 439 | 626 | 3.35e-35 | 133 |
| MS.gene31609.t1 | MTR_8g445170 | 40.000 | 150 | 83 | 3 | 115 | 264 | 240 | 382 | 2.70e-33 | 125 |
| MS.gene31609.t1 | MTR_6g086530 | 33.333 | 195 | 122 | 6 | 79 | 266 | 13 | 206 | 7.03e-33 | 119 |
| MS.gene31609.t1 | MTR_8g445140 | 30.469 | 256 | 120 | 7 | 53 | 264 | 60 | 301 | 2.36e-32 | 120 |
| MS.gene31609.t1 | MTR_1g008420 | 75.610 | 82 | 18 | 2 | 38 | 118 | 119 | 199 | 6.44e-32 | 117 |
| MS.gene31609.t1 | MTR_8g046000 | 35.000 | 220 | 109 | 8 | 51 | 264 | 30 | 221 | 6.96e-32 | 117 |
| MS.gene31609.t1 | MTR_8g045890 | 43.056 | 144 | 75 | 4 | 121 | 264 | 294 | 430 | 1.14e-31 | 121 |
| MS.gene31609.t1 | MTR_8g045890 | 43.056 | 144 | 75 | 4 | 121 | 264 | 335 | 471 | 2.31e-31 | 121 |
| MS.gene31609.t1 | MTR_2g081610 | 34.579 | 214 | 111 | 7 | 52 | 264 | 73 | 258 | 2.77e-31 | 117 |
| MS.gene31609.t1 | MTR_4g133840 | 33.511 | 188 | 106 | 4 | 79 | 263 | 15 | 186 | 2.79e-31 | 115 |
| MS.gene31609.t1 | MTR_8g045890 | 43.056 | 144 | 75 | 4 | 121 | 264 | 372 | 508 | 3.05e-31 | 121 |
| MS.gene31609.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 119 | 264 | 175 | 313 | 1.47e-30 | 116 |
| MS.gene31609.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 119 | 264 | 210 | 348 | 2.24e-30 | 117 |
| MS.gene31609.t1 | MTR_8g045880 | 41.781 | 146 | 78 | 3 | 119 | 264 | 212 | 350 | 2.96e-30 | 116 |
| MS.gene31609.t1 | MTR_2g081770 | 32.093 | 215 | 120 | 6 | 52 | 264 | 79 | 269 | 7.20e-29 | 110 |
| MS.gene31609.t1 | MTR_2g081590 | 32.710 | 214 | 115 | 7 | 52 | 264 | 73 | 258 | 7.84e-29 | 110 |
| MS.gene31609.t1 | MTR_5g033340 | 30.455 | 220 | 145 | 5 | 50 | 265 | 164 | 379 | 1.37e-27 | 109 |
| MS.gene31609.t1 | MTR_5g033340 | 32.215 | 149 | 95 | 3 | 102 | 247 | 8 | 153 | 5.45e-16 | 77.4 |
| MS.gene31609.t1 | MTR_1g045860 | 32.110 | 218 | 115 | 7 | 52 | 264 | 69 | 258 | 3.70e-26 | 103 |
| MS.gene31609.t1 | MTR_5g033350 | 31.250 | 192 | 125 | 4 | 78 | 265 | 12 | 200 | 5.65e-26 | 101 |
| MS.gene31609.t1 | MTR_5g033330 | 30.275 | 218 | 144 | 5 | 50 | 263 | 403 | 616 | 5.87e-25 | 103 |
| MS.gene31609.t1 | MTR_5g033330 | 30.198 | 202 | 133 | 5 | 50 | 247 | 195 | 392 | 8.57e-21 | 92.0 |
| MS.gene31609.t1 | MTR_5g033330 | 31.034 | 174 | 113 | 4 | 78 | 247 | 14 | 184 | 9.53e-18 | 82.8 |
| MS.gene31609.t1 | MTR_8g044290 | 44.545 | 110 | 55 | 3 | 121 | 230 | 229 | 332 | 1.70e-23 | 99.4 |
| MS.gene31609.t1 | MTR_5g033360 | 28.311 | 219 | 133 | 6 | 50 | 265 | 25 | 222 | 1.23e-21 | 90.5 |
| MS.gene31609.t1 | MTR_4g068420 | 35.294 | 136 | 68 | 5 | 132 | 264 | 1 | 119 | 6.07e-20 | 83.6 |
| MS.gene31609.t1 | MTR_8g075930 | 40.506 | 79 | 43 | 2 | 179 | 254 | 10 | 87 | 2.61e-18 | 77.8 |
| MS.gene31609.t1 | MTR_5g033430 | 33.333 | 87 | 56 | 2 | 181 | 265 | 24 | 110 | 2.82e-13 | 65.5 |
| MS.gene31609.t1 | MTR_5g033440 | 32.184 | 87 | 57 | 2 | 181 | 265 | 24 | 110 | 1.42e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31609.t1 | AT5G25610 | 56.746 | 252 | 100 | 5 | 22 | 265 | 141 | 391 | 2.96e-97 | 290 |
| MS.gene31609.t1 | AT1G49320 | 37.662 | 231 | 134 | 5 | 45 | 266 | 51 | 280 | 9.22e-50 | 165 |
| MS.gene31609.t1 | AT1G60390 | 35.321 | 218 | 129 | 6 | 52 | 263 | 409 | 620 | 3.24e-37 | 139 |
| MS.gene31609.t1 | AT1G70370 | 34.562 | 217 | 134 | 4 | 52 | 264 | 411 | 623 | 2.93e-36 | 136 |
| MS.gene31609.t1 | AT1G70370 | 34.562 | 217 | 134 | 4 | 52 | 264 | 411 | 623 | 2.93e-36 | 136 |
| MS.gene31609.t1 | AT1G23760 | 33.641 | 217 | 136 | 5 | 52 | 264 | 407 | 619 | 3.35e-34 | 130 |
Find 40 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATTAGCAACTTCTTT+AGG | 0.259477 | 1.1:+10996531 | None:intergenic |
| TTCTTCTGTTCCTTCTTTGA+TGG | 0.265021 | 1.1:+10996464 | None:intergenic |
| GGCAAAAGGTGTGAAGAAAT+TGG | 0.273962 | 1.1:-10996259 | MS.gene31609:CDS |
| TGTACTTTGCTTGAAGAAAA+AGG | 0.274463 | 1.1:+10996507 | None:intergenic |
| TTCCACAGGATCATGTTGTT+TGG | 0.285326 | 1.1:-10996005 | MS.gene31609:CDS |
| ACTTGAAAAGCCAAATGTTT+AGG | 0.303666 | 1.1:+10996069 | None:intergenic |
| TCCACAGGATCATGTTGTTT+GGG | 0.305699 | 1.1:-10996004 | MS.gene31609:CDS |
| TGTGACATCATTGGAATCTA+TGG | 0.323363 | 1.1:-10996373 | MS.gene31609:CDS |
| ATAAGTGAGTGTGAAGAAAA+TGG | 0.348496 | 1.1:-10996420 | MS.gene31609:CDS |
| GTGCCTTTGGAAGGTGTTGA+TGG | 0.355685 | 1.1:-10996144 | MS.gene31609:CDS |
| AAGAAGAAAAGTGCTACATT+TGG | 0.370145 | 1.1:+10996633 | None:intergenic |
| ACAATGGAATCCTAAACATT+TGG | 0.370419 | 1.1:-10996079 | MS.gene31609:CDS |
| TAAAGTTTACTCTGTGCCTT+TGG | 0.380290 | 1.1:-10996157 | MS.gene31609:CDS |
| TTGAAAAGTTCTCAATTACT+TGG | 0.383116 | 1.1:+10995978 | None:intergenic |
| AAAGCTTTGTGTGACATCAT+TGG | 0.404983 | 1.1:-10996382 | MS.gene31609:CDS |
| CTTTGATGGAGAACATGTTA+AGG | 0.426299 | 1.1:+10996478 | None:intergenic |
| GCAAAAGGTGTGAAGAAATT+GGG | 0.438714 | 1.1:-10996258 | MS.gene31609:CDS |
| CAAGAATATGTAATGGCAAA+AGG | 0.445313 | 1.1:-10996273 | MS.gene31609:CDS |
| TGTGGAAGGAAGTGACAAAC+TGG | 0.450964 | 1.1:+10996021 | None:intergenic |
| CAAGTGCTCAATGTTCAACC+TGG | 0.454270 | 1.1:-10996051 | MS.gene31609:CDS |
| GATTTCACTACTTCGAAACT+TGG | 0.458312 | 1.1:-10996348 | MS.gene31609:CDS |
| TTAGAAAAGGATTTACATCA+AGG | 0.470233 | 1.1:-10996612 | MS.gene31609:CDS |
| AACTATATGAATGTTGATGC+AGG | 0.499341 | 1.1:-10996777 | None:intergenic |
| AGTTTGTCACTTCCTTCCAC+AGG | 0.501409 | 1.1:-10996019 | MS.gene31609:CDS |
| ATTAAAGGACAACCAGGAAA+AGG | 0.504978 | 1.1:-10996711 | MS.gene31609:CDS |
| GTTTACTCTGTGCCTTTGGA+AGG | 0.519063 | 1.1:-10996153 | MS.gene31609:CDS |
| TGTGAAGAAAATGGCATCAA+AGG | 0.529052 | 1.1:-10996411 | MS.gene31609:CDS |
| AACATGTTCTCCATCAAAGA+AGG | 0.536136 | 1.1:-10996474 | MS.gene31609:CDS |
| TGACAAACTGGAACAGTCCC+AGG | 0.541759 | 1.1:+10996033 | None:intergenic |
| ACACAACAACAGCTTTAACT+CGG | 0.579233 | 1.1:+10996118 | None:intergenic |
| TGACTTGCAAGAATATGTAA+TGG | 0.583650 | 1.1:-10996280 | MS.gene31609:CDS |
| GCAGCATAATTGTAAAACAT+AGG | 0.586082 | 1.1:+10996681 | None:intergenic |
| AAAGGACAACCAGGAAAAGG+TGG | 0.597740 | 1.1:-10996708 | MS.gene31609:CDS |
| AAGTGCTCAATGTTCAACCT+GGG | 0.607659 | 1.1:-10996050 | MS.gene31609:CDS |
| CTTCCATCAACACCTTCCAA+AGG | 0.627468 | 1.1:+10996141 | None:intergenic |
| AAACAACATGATCCTGTGGA+AGG | 0.641220 | 1.1:+10996007 | None:intergenic |
| AGAAAATGGCATCAAAGGAG+AGG | 0.642414 | 1.1:-10996406 | MS.gene31609:CDS |
| AAAGATATTAAAGGACAACC+AGG | 0.645079 | 1.1:-10996717 | MS.gene31609:CDS |
| ACCCAAACAACATGATCCTG+TGG | 0.647573 | 1.1:+10996003 | None:intergenic |
| GTCACACTGATACTTCACAA+TGG | 0.703629 | 1.1:-10996095 | MS.gene31609:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAGAAAAAGATATTAA+AGG | - | chr1.1:10996038-10996057 | MS.gene31609:CDS | 15.0% |
| ! | ATTGAATTAGCAACTTCTTT+AGG | + | chr1.1:10996236-10996255 | None:intergenic | 25.0% |
| ! | TTAGAAAAGGATTTACATCA+AGG | - | chr1.1:10996152-10996171 | MS.gene31609:CDS | 25.0% |
| AAAGATATTAAAGGACAACC+AGG | - | chr1.1:10996047-10996066 | MS.gene31609:CDS | 30.0% | |
| ACAATGGAATCCTAAACATT+TGG | - | chr1.1:10996685-10996704 | MS.gene31609:CDS | 30.0% | |
| ACTTGAAAAGCCAAATGTTT+AGG | + | chr1.1:10996698-10996717 | None:intergenic | 30.0% | |
| ATAAGTGAGTGTGAAGAAAA+TGG | - | chr1.1:10996344-10996363 | MS.gene31609:CDS | 30.0% | |
| CAAGAATATGTAATGGCAAA+AGG | - | chr1.1:10996491-10996510 | MS.gene31609:CDS | 30.0% | |
| GACAGTAAAAAACTGCATAA+GGG | + | chr1.1:10996571-10996590 | None:intergenic | 30.0% | |
| GCAGCATAATTGTAAAACAT+AGG | + | chr1.1:10996086-10996105 | None:intergenic | 30.0% | |
| TGACAGTAAAAAACTGCATA+AGG | + | chr1.1:10996572-10996591 | None:intergenic | 30.0% | |
| TGTACTTTGCTTGAAGAAAA+AGG | + | chr1.1:10996260-10996279 | None:intergenic | 30.0% | |
| ! | AGCACTTTTCTTCTTAGAAA+AGG | - | chr1.1:10996139-10996158 | MS.gene31609:CDS | 30.0% |
| ! | TGACTTGCAAGAATATGTAA+TGG | - | chr1.1:10996484-10996503 | MS.gene31609:CDS | 30.0% |
| ! | TTTTGCTTCATCATTTGAGT+TGG | + | chr1.1:10996207-10996226 | None:intergenic | 30.0% |
| !! | AAGAAGAAAAGTGCTACATT+TGG | + | chr1.1:10996134-10996153 | None:intergenic | 30.0% |
| AACATGTTCTCCATCAAAGA+AGG | - | chr1.1:10996290-10996309 | MS.gene31609:CDS | 35.0% | |
| ATGCAGGAAAAACAAAGTCA+AGG | - | chr1.1:10996003-10996022 | MS.gene31609:CDS | 35.0% | |
| ATTAAAGGACAACCAGGAAA+AGG | - | chr1.1:10996053-10996072 | MS.gene31609:CDS | 35.0% | |
| CTTTGATGGAGAACATGTTA+AGG | + | chr1.1:10996289-10996308 | None:intergenic | 35.0% | |
| GATTTCACTACTTCGAAACT+TGG | - | chr1.1:10996416-10996435 | MS.gene31609:CDS | 35.0% | |
| TAAAGTTTACTCTGTGCCTT+TGG | - | chr1.1:10996607-10996626 | MS.gene31609:CDS | 35.0% | |
| TGCAGGAAAAACAAAGTCAA+GGG | - | chr1.1:10996004-10996023 | MS.gene31609:CDS | 35.0% | |
| TGTGAAGAAAATGGCATCAA+AGG | - | chr1.1:10996353-10996372 | MS.gene31609:CDS | 35.0% | |
| TGTGACATCATTGGAATCTA+TGG | - | chr1.1:10996391-10996410 | MS.gene31609:CDS | 35.0% | |
| TTCTTCTGTTCCTTCTTTGA+TGG | + | chr1.1:10996303-10996322 | None:intergenic | 35.0% | |
| ! | AAAGCTTTGTGTGACATCAT+TGG | - | chr1.1:10996382-10996401 | MS.gene31609:CDS | 35.0% |
| ! | ACACAACAACAGCTTTAACT+CGG | + | chr1.1:10996649-10996668 | None:intergenic | 35.0% |
| ! | GCAAAAGGTGTGAAGAAATT+GGG | - | chr1.1:10996506-10996525 | MS.gene31609:CDS | 35.0% |
| AAACAACATGATCCTGTGGA+AGG | + | chr1.1:10996760-10996779 | None:intergenic | 40.0% | |
| AAGTGCTCAATGTTCAACCT+GGG | - | chr1.1:10996714-10996733 | MS.gene31609:CDS | 40.0% | |
| AGAAAATGGCATCAAAGGAG+AGG | - | chr1.1:10996358-10996377 | MS.gene31609:CDS | 40.0% | |
| GCAGGAAAAACAAAGTCAAG+GGG | - | chr1.1:10996005-10996024 | MS.gene31609:CDS | 40.0% | |
| GTCACACTGATACTTCACAA+TGG | - | chr1.1:10996669-10996688 | MS.gene31609:CDS | 40.0% | |
| TTCCACAGGATCATGTTGTT+TGG | - | chr1.1:10996759-10996778 | MS.gene31609:CDS | 40.0% | |
| ! | ATAGGAAAACCACCTTTTCC+TGG | + | chr1.1:10996068-10996087 | None:intergenic | 40.0% |
| ! | GGCAAAAGGTGTGAAGAAAT+TGG | - | chr1.1:10996505-10996524 | MS.gene31609:CDS | 40.0% |
| ! | TCCACAGGATCATGTTGTTT+GGG | - | chr1.1:10996760-10996779 | MS.gene31609:CDS | 40.0% |
| AAAGGACAACCAGGAAAAGG+TGG | - | chr1.1:10996056-10996075 | MS.gene31609:CDS | 45.0% | |
| ACCCAAACAACATGATCCTG+TGG | + | chr1.1:10996764-10996783 | None:intergenic | 45.0% | |
| CAAGTGCTCAATGTTCAACC+TGG | - | chr1.1:10996713-10996732 | MS.gene31609:CDS | 45.0% | |
| CTTCCATCAACACCTTCCAA+AGG | + | chr1.1:10996626-10996645 | None:intergenic | 45.0% | |
| GTTTACTCTGTGCCTTTGGA+AGG | - | chr1.1:10996611-10996630 | MS.gene31609:CDS | 45.0% | |
| TGTGGAAGGAAGTGACAAAC+TGG | + | chr1.1:10996746-10996765 | None:intergenic | 45.0% | |
| ! | AGTTTGTCACTTCCTTCCAC+AGG | - | chr1.1:10996745-10996764 | MS.gene31609:CDS | 45.0% |
| TGACAAACTGGAACAGTCCC+AGG | + | chr1.1:10996734-10996753 | None:intergenic | 50.0% | |
| !! | GTGCCTTTGGAAGGTGTTGA+TGG | - | chr1.1:10996620-10996639 | MS.gene31609:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 10995993 | 10996793 | 10995993 | ID=MS.gene31609 |
| chr1.1 | mRNA | 10995993 | 10996793 | 10995993 | ID=MS.gene31609.t1;Parent=MS.gene31609 |
| chr1.1 | exon | 10995993 | 10996793 | 10995993 | ID=MS.gene31609.t1.exon1;Parent=MS.gene31609.t1 |
| chr1.1 | CDS | 10995993 | 10996793 | 10995993 | ID=cds.MS.gene31609.t1;Parent=MS.gene31609.t1 |
| Gene Sequence |
| Protein sequence |
