Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94150.t1 | Q07202.1 | 98.5 | 204 | 3 | 0 | 1 | 204 | 1 | 204 | 1.90E-23 | 119.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94150.t1 | Q07202 | 98.5 | 204 | 3 | 0 | 1 | 204 | 1 | 204 | 4.7e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94150.t1 | G7K7D5 | 93.5 | 155 | 7 | 1 | 1 | 155 | 1 | 152 | 8.3e-16 | 93.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene94150 | 0.80814 | 3.59E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene94150 | 0.813455 | 2.54E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene94150 | 0.839515 | 1.51E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene94150 | 0.849449 | 3.21E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene94150 | 0.821482 | 3.94E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene94150 | 0.807938 | 3.96E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene94150 | 0.812285 | 4.58E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene94150 | 0.819782 | 9.69E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene94150 | 0.825143 | 5.50E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene94150 | 0.828277 | 9.83E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene94150 | 0.806515 | 7.93E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene94150 | 0.824802 | 6.63E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene94150 | 0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene94150 | 0.846606 | 1.95E-59 | -1.69E-46 |
| MS.gene053073 | MS.gene94150 | 0.875397 | 3.18E-68 | -1.69E-46 |
| MS.gene05316 | MS.gene94150 | 0.846155 | 2.59E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene94150 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene94150 | 0.857464 | 1.60E-62 | -1.69E-46 |
| MS.gene053559 | MS.gene94150 | 0.809001 | 2.35E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene94150 | 0.838664 | 2.51E-57 | -1.69E-46 |
| MS.gene053907 | MS.gene94150 | 0.817675 | 2.92E-52 | -1.69E-46 |
| MS.gene054327 | MS.gene94150 | 0.850922 | 1.24E-60 | -1.69E-46 |
| MS.gene054930 | MS.gene94150 | 0.824871 | 6.38E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene94150 | 0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene05553 | MS.gene94150 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene94150 | 0.820478 | 6.71E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene94150 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene94150 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene94150 | 0.831312 | 1.79E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene94150 | 0.81996 | 8.82E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene94150 | 0.823923 | 1.07E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene94150 | 0.823004 | 1.75E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene94150 | 0.831352 | 1.75E-55 | -1.69E-46 |
| MS.gene057690 | MS.gene94150 | 0.824349 | 8.47E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene94150 | 0.807772 | 4.29E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene94150 | 0.833666 | 4.68E-56 | -1.69E-46 |
| MS.gene058142 | MS.gene94150 | 0.826192 | 3.10E-54 | -1.69E-46 |
| MS.gene058239 | MS.gene94150 | 0.827583 | 1.44E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene94150 | 0.815494 | 8.98E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene94150 | 0.810021 | 1.42E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene94150 | 0.817176 | 3.78E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene94150 | 0.808303 | 3.31E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene94150 | 0.827275 | 1.71E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene94150 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene94150 | 0.811059 | 8.46E-51 | -1.69E-46 |
| MS.gene059788 | MS.gene94150 | 0.804145 | 2.49E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene94150 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene94150 | 0.889854 | 1.67E-73 | -1.69E-46 |
| MS.gene059899 | MS.gene94150 | 0.854875 | 9.20E-62 | -1.69E-46 |
| MS.gene060407 | MS.gene94150 | 0.831616 | 1.51E-55 | -1.69E-46 |
| MS.gene060495 | MS.gene94150 | 0.84059 | 7.93E-58 | -1.69E-46 |
| MS.gene060943 | MS.gene94150 | 0.813319 | 2.72E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene94150 | 0.847063 | 1.47E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene94150 | -0.816686 | 4.87E-52 | -1.69E-46 |
| MS.gene061112 | MS.gene94150 | 0.869736 | 2.48E-66 | -1.69E-46 |
| MS.gene061113 | MS.gene94150 | 0.835974 | 1.23E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene94150 | 0.850211 | 1.97E-60 | -1.69E-46 |
| MS.gene061265 | MS.gene94150 | 0.87495 | 4.52E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94150.t1 | MTR_5g084470 | 62.443 | 221 | 43 | 4 | 1 | 204 | 1 | 198 | 4.46e-23 | 92.0 |
| MS.gene94150.t1 | MTR_5g084570 | 82.000 | 50 | 8 | 1 | 1 | 49 | 1 | 50 | 8.48e-21 | 85.5 |
| MS.gene94150.t1 | MTR_5g084530 | 55.429 | 175 | 33 | 3 | 1 | 174 | 1 | 131 | 3.05e-20 | 82.8 |
| MS.gene94150.t1 | MTR_5g084540 | 80.392 | 51 | 9 | 1 | 1 | 50 | 1 | 51 | 6.25e-20 | 82.8 |
| MS.gene94150.t1 | MTR_5g084530 | 94.000 | 50 | 3 | 0 | 1 | 50 | 1 | 50 | 9.57e-18 | 77.0 |
| MS.gene94150.t1 | MTR_5g084410 | 54.839 | 93 | 29 | 5 | 1 | 90 | 1 | 83 | 7.23e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 99 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTACCACCTCCATATT+TGG | 0.177321 | 5.4:+66839420 | None:intergenic |
| AACTTCCACTGATGCTAAAA+AGG | 0.209251 | 5.4:-66840073 | MS.gene94150:CDS |
| GTTGTAGCCACCACCATATT+TGG | 0.273817 | 5.4:+66839723 | None:intergenic |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5.4:-66840166 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.4:-66839433 | MS.gene94150:CDS |
| CATGGTGGACATGGTGGCCA+TGG | 0.383531 | 5.4:-66839325 | MS.gene94150:CDS |
| GGTGGTTACAATGGTGGTGG+GGG | 0.404226 | 5.4:-66839598 | MS.gene94150:CDS |
| GAAGCAAATGATGCCAAATA+TGG | 0.409951 | 5.4:-66839736 | MS.gene94150:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.415260 | 5.4:-66839601 | MS.gene94150:CDS |
| GGTCACGGTGGTCACGGTGG+AGG | 0.419681 | 5.4:-66839577 | MS.gene94150:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5.4:-66839499 | MS.gene94150:CDS |
| AGGTGGTTACAATGGTGGTG+GGG | 0.426416 | 5.4:-66839599 | MS.gene94150:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.441060 | 5.4:-66839574 | MS.gene94150:CDS |
| CATGCTAAGCCTCTTGGCTA+TGG | 0.452537 | 5.4:-66840136 | MS.gene94150:CDS |
| GAGGTGGTTACAATGGTGGT+GGG | 0.460517 | 5.4:-66839600 | MS.gene94150:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.466257 | 5.4:-66839316 | MS.gene94150:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.469212 | 5.4:-66839532 | MS.gene94150:CDS |
| CACGGTGGACATGGTGGACA+TGG | 0.472527 | 5.4:-66839334 | MS.gene94150:CDS |
| GGAGGTGGCCACGGTGGACA+TGG | 0.474455 | 5.4:-66839343 | MS.gene94150:CDS |
| CACGGTGGTGGCTACAACCA+CGG | 0.484705 | 5.4:-66839667 | MS.gene94150:CDS |
| GGACACGGTGGTCACGGTGG+AGG | 0.486069 | 5.4:-66839535 | MS.gene94150:CDS |
| AATCCTCATGCTAAGCCTCT+TGG | 0.494599 | 5.4:-66840142 | MS.gene94150:CDS |
| GGTGGAGGACACGGTGGTCA+CGG | 0.494972 | 5.4:-66839541 | MS.gene94150:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.4:-66839514 | MS.gene94150:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.4:-66839508 | MS.gene94150:CDS |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5.4:-66840107 | MS.gene94150:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.510095 | 5.4:-66839658 | MS.gene94150:CDS |
| GGTGGTTACCACAATGGTGG+TGG | 0.512481 | 5.4:-66839640 | MS.gene94150:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.514615 | 5.4:-66839619 | MS.gene94150:CDS |
| CATGGTGGTCACGGTGGACA+CGG | 0.515497 | 5.4:-66839307 | MS.gene94150:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.515766 | 5.4:-66839379 | MS.gene94150:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.521180 | 5.4:-66839661 | MS.gene94150:CDS |
| GGTGGCTACAACCATGGTGG+TGG | 0.524637 | 5.4:-66839712 | MS.gene94150:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.531058 | 5.4:-66839358 | MS.gene94150:CDS |
| AGTGTTGTCCTCAGTTTGCA+CGG | 0.535241 | 5.4:+66839282 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5.4:-66839556 | MS.gene94150:CDS |
| AGTAATTACAACGATGGTAG+AGG | 0.535647 | 5.4:-66839403 | MS.gene94150:CDS |
| GGTAGAGGTGGCTACAACCA+CGG | 0.539916 | 5.4:-66839388 | MS.gene94150:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5.4:-66840106 | MS.gene94150:CDS |
| AACCACGGTGGAGGTGGCCA+CGG | 0.549270 | 5.4:-66839352 | MS.gene94150:CDS |
| TACAATGGTGGTGGAGGACA+CGG | 0.556001 | 5.4:-66839550 | MS.gene94150:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.4:-66839517 | MS.gene94150:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.4:-66839559 | MS.gene94150:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.562762 | 5.4:-66839616 | MS.gene94150:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.4:-66839523 | MS.gene94150:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.4:-66839565 | MS.gene94150:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5.4:-66839361 | MS.gene94150:CDS |
| TATGGTGGTGGCTACAACCA+TGG | 0.573559 | 5.4:-66839718 | MS.gene94150:CDS |
| GGTTACCACAATGGTGGTGG+CGG | 0.574406 | 5.4:-66839637 | MS.gene94150:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.582186 | 5.4:-66839607 | MS.gene94150:CDS |
| AATGATGCCAAATATGGAGG+TGG | 0.589889 | 5.4:-66839427 | MS.gene94150:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.593426 | 5.4:-66839679 | MS.gene94150:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.603294 | 5.4:-66839697 | MS.gene94150:CDS |
| GGTGGCTACAACCACGGTGG+AGG | 0.603384 | 5.4:-66839382 | MS.gene94150:CDS |
| GGTGGCCACGGTGGACATGG+TGG | 0.607225 | 5.4:-66839340 | MS.gene94150:CDS |
| ATCTGTTACCGTGCAAACTG+AGG | 0.618883 | 5.4:-66839467 | MS.gene94150:CDS |
| CATGGTGGTGGTTACAATGG+TGG | 0.620372 | 5.4:-66839700 | MS.gene94150:CDS |
| GGTGGTGGCGGTTACAACCA+CGG | 0.630576 | 5.4:-66839625 | MS.gene94150:CDS |
| CACGGTGGAGGTGGCCACGG+TGG | 0.630965 | 5.4:-66839349 | MS.gene94150:CDS |
| GGTGGACATGGTGGCCATGG+TGG | 0.631249 | 5.4:-66839322 | MS.gene94150:CDS |
| AACCATGGTGGTGGTTACAA+TGG | 0.632166 | 5.4:-66839703 | MS.gene94150:CDS |
| TGTAACCGCCACCACCATTG+TGG | 0.638615 | 5.4:+66839632 | None:intergenic |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5.4:-66839496 | MS.gene94150:CDS |
| GGTGGACATGGTGGACATGG+TGG | 0.641993 | 5.4:-66839331 | MS.gene94150:CDS |
| GGTGGCCATGGTGGTCACGG+TGG | 0.648775 | 5.4:-66839313 | MS.gene94150:CDS |
| AATGATGCCAAATATGGTGG+TGG | 0.651740 | 5.4:-66839730 | MS.gene94150:CDS |
| GGTGGAGGTGGTTACCACAA+TGG | 0.652457 | 5.4:-66839646 | MS.gene94150:CDS |
| AATTACAACGATGGTAGAGG+TGG | 0.652701 | 5.4:-66839400 | MS.gene94150:CDS |
| GGAGGACACGGTGGTCACGG+TGG | 0.653298 | 5.4:-66839538 | MS.gene94150:CDS |
| ACACGGTGCCGTGCAAACTG+AGG | 0.653858 | 5.4:-66839290 | MS.gene94150:CDS |
| TAGCCAAGAGGCTTAGCATG+AGG | 0.658082 | 5.4:+66840139 | None:intergenic |
| CGTGTCCACCGTGACCACCA+TGG | 0.663650 | 5.4:+66839308 | None:intergenic |
| CACCATTGTAACCACCACCA+TGG | 0.664810 | 5.4:+66839701 | None:intergenic |
| GGTGGTAGTAATTACAACGA+TGG | 0.680382 | 5.4:-66839409 | MS.gene94150:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.4:-66839520 | MS.gene94150:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.4:-66839562 | MS.gene94150:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.4:-66839604 | MS.gene94150:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5.4:-66839367 | MS.gene94150:CDS |
| CACCGTGGCCACCTCCACCG+TGG | 0.688584 | 5.4:+66839350 | None:intergenic |
| AGTTTCATTTAAGTCCCTAG+CGG | 0.691336 | 5.4:+66840092 | None:intergenic |
| GTAAATGATGCCAAATATGG+AGG | 0.695370 | 5.4:-66839430 | MS.gene94150:CDS |
| GGAGGTGGTTACCACAATGG+TGG | 0.699554 | 5.4:-66839643 | MS.gene94150:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5.4:+66840127 | None:intergenic |
| GCAAATGATGCCAAATATGG+TGG | 0.711177 | 5.4:-66839733 | MS.gene94150:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.4:-66839505 | MS.gene94150:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.4:-66839685 | MS.gene94150:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5.4:+66839371 | None:intergenic |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5.4:+66839650 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5.4:+66840104 | None:intergenic |
| CATTGTAACCACCTCCACCG+TGG | 0.728784 | 5.4:+66839608 | None:intergenic |
| AATGGTGGTGGAGGACACGG+TGG | 0.730218 | 5.4:-66839547 | MS.gene94150:CDS |
| CGTGGTTGTAGCCACCACCG+TGG | 0.737277 | 5.4:+66839668 | None:intergenic |
| CATGTCCACCATGTCCACCG+TGG | 0.747881 | 5.4:+66839335 | None:intergenic |
| GGTGGTGGCTACAACCATGG+TGG | 0.749832 | 5.4:-66839715 | MS.gene94150:CDS |
| GGTGGTGGCTACAACCACGG+TGG | 0.776238 | 5.4:-66839664 | MS.gene94150:CDS |
| GGTGGCGGTTACAACCACGG+TGG | 0.777031 | 5.4:-66839622 | MS.gene94150:CDS |
| AGAGGTGGCTACAACCACGG+TGG | 0.781749 | 5.4:-66839385 | MS.gene94150:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5.4:-66839364 | MS.gene94150:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5.4:-66839682 | MS.gene94150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAATATTG+AGG | + | chr5.4:66839545-66839564 | None:intergenic | 10.0% |
| !! | GAATCTTTAAATGAATAATT+AGG | + | chr5.4:66839637-66839656 | None:intergenic | 15.0% |
| !! | AAATTATTCAAACATTACAC+CGG | - | chr5.4:66839599-66839618 | MS.gene94150:CDS | 20.0% |
| !! | GAATTATCCTTCAAAAAATT+AGG | + | chr5.4:66839452-66839471 | None:intergenic | 20.0% |
| !!! | ATTCTTTCCTAATTTTTTGA+AGG | - | chr5.4:66839442-66839461 | MS.gene94150:CDS | 20.0% |
| ! | AATTAGGAATATCAAATCAC+CGG | + | chr5.4:66839621-66839640 | None:intergenic | 25.0% |
| CATATATATTGTGTTTGCAG+AGG | - | chr5.4:66839656-66839675 | MS.gene94150:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.4:66839999-66840018 | MS.gene94150:intron | 30.0% | |
| TTCAATAAGAAGTTGTTGAG+TGG | - | chr5.4:66839572-66839591 | MS.gene94150:CDS | 30.0% | |
| AACTTCCACTGATGCTAAAA+AGG | - | chr5.4:66839359-66839378 | MS.gene94150:CDS | 35.0% | |
| ACTTCCACTGATGCTAAAAA+GGG | - | chr5.4:66839360-66839379 | MS.gene94150:CDS | 35.0% | |
| AGTAATTACAACGATGGTAG+AGG | - | chr5.4:66840029-66840048 | MS.gene94150:intron | 35.0% | |
| AGTTTCATTTAAGTCCCTAG+CGG | + | chr5.4:66839343-66839362 | None:intergenic | 35.0% | |
| ATTACTACCACCTCCATATT+TGG | + | chr5.4:66840015-66840034 | None:intergenic | 35.0% | |
| GAAGCAAATGATGCCAAATA+TGG | - | chr5.4:66839696-66839715 | MS.gene94150:CDS | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.4:66840002-66840021 | MS.gene94150:intron | 35.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.4:66839308-66839327 | None:intergenic | 40.0% | |
| AATGATGCCAAATATGGAGG+TGG | - | chr5.4:66840005-66840024 | MS.gene94150:intron | 40.0% | |
| AATGATGCCAAATATGGTGG+TGG | - | chr5.4:66839702-66839721 | MS.gene94150:CDS | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | - | chr5.4:66840032-66840051 | MS.gene94150:intron | 40.0% | |
| GCAAATGATGCCAAATATGG+TGG | - | chr5.4:66839699-66839718 | MS.gene94150:CDS | 40.0% | |
| GGTGGTAGTAATTACAACGA+TGG | - | chr5.4:66840023-66840042 | MS.gene94150:intron | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.4:66839747-66839766 | MS.gene94150:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.4:66839976-66839995 | None:intergenic | 40.0% |
| AATCCTCATGCTAAGCCTCT+TGG | - | chr5.4:66839290-66839309 | MS.gene94150:CDS | 45.0% | |
| AGTGTTGTCCTCAGTTTGCA+CGG | + | chr5.4:66840153-66840172 | None:intergenic | 45.0% | |
| ATCTGTTACCGTGCAAACTG+AGG | - | chr5.4:66839965-66839984 | MS.gene94150:intron | 45.0% | |
| GTTGTAGCCACCACCATATT+TGG | + | chr5.4:66839712-66839731 | None:intergenic | 45.0% | |
| !! | AACCATGGTGGTGGTTACAA+TGG | - | chr5.4:66839729-66839748 | MS.gene94150:CDS | 45.0% |
| !! | CTCACCCTTTTTAGCATCAG+TGG | + | chr5.4:66839367-66839386 | None:intergenic | 45.0% |
| CACCATTGTAACCACCACCA+TGG | + | chr5.4:66839734-66839753 | None:intergenic | 50.0% | |
| CATGCTAAGCCTCTTGGCTA+TGG | - | chr5.4:66839296-66839315 | MS.gene94150:CDS | 50.0% | |
| GAGGTGGTTACAATGGTGGT+GGG | - | chr5.4:66839832-66839851 | MS.gene94150:intron | 50.0% | |
| TAGCCAAGAGGCTTAGCATG+AGG | + | chr5.4:66839296-66839315 | None:intergenic | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | - | chr5.4:66839326-66839345 | MS.gene94150:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | - | chr5.4:66839325-66839344 | MS.gene94150:CDS | 50.0% | |
| ! | AGGTGGTTACAATGGTGGTG+GGG | - | chr5.4:66839833-66839852 | MS.gene94150:intron | 50.0% |
| !! | CATGGTGGTGGTTACAATGG+TGG | - | chr5.4:66839732-66839751 | MS.gene94150:CDS | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+CGG | - | chr5.4:66839882-66839901 | MS.gene94150:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.4:66839924-66839943 | MS.gene94150:intron | 50.0% |
| !! | TATGGTGGTGGCTACAACCA+TGG | - | chr5.4:66839714-66839733 | MS.gene94150:CDS | 50.0% |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.4:66839825-66839844 | MS.gene94150:intron | 55.0% | |
| CATTGTAACCACCTCCACCG+TGG | + | chr5.4:66839827-66839846 | None:intergenic | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.4:66839831-66839850 | MS.gene94150:intron | 55.0% | |
| GGAGGTGGTTACCACAATGG+TGG | - | chr5.4:66839789-66839808 | MS.gene94150:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | - | chr5.4:66839753-66839772 | MS.gene94150:CDS | 55.0% | |
| GGTAGAGGTGGCTACAACCA+CGG | - | chr5.4:66840044-66840063 | MS.gene94150:intron | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5.4:66840065-66840084 | MS.gene94150:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.4:66839828-66839847 | MS.gene94150:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+TGG | - | chr5.4:66839786-66839805 | MS.gene94150:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.4:66839750-66839769 | MS.gene94150:CDS | 55.0% | |
| GGTGGTTACCACAATGGTGG+TGG | - | chr5.4:66839792-66839811 | MS.gene94150:intron | 55.0% | |
| TGTAACCGCCACCACCATTG+TGG | + | chr5.4:66839803-66839822 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.4:66839735-66839754 | MS.gene94150:CDS | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.4:66839834-66839853 | MS.gene94150:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+GGG | - | chr5.4:66839834-66839853 | MS.gene94150:intron | 55.0% |
| !! | GGTTACCACAATGGTGGTGG+CGG | - | chr5.4:66839795-66839814 | MS.gene94150:intron | 55.0% |
| !! | TACAATGGTGGTGGGGGTCA+CGG | - | chr5.4:66839840-66839859 | MS.gene94150:intron | 55.0% |
| AGAGGTGGCTACAACCACGG+TGG | - | chr5.4:66840047-66840066 | MS.gene94150:intron | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | - | chr5.4:66840116-66840135 | MS.gene94150:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | - | chr5.4:66840125-66840144 | MS.gene94150:CDS | 60.0% | |
| CATGTCCACCATGTCCACCG+TGG | + | chr5.4:66840100-66840119 | None:intergenic | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5.4:66840068-66840087 | MS.gene94150:intron | 60.0% | |
| GGTGGCTACAACCATGGTGG+TGG | - | chr5.4:66839720-66839739 | MS.gene94150:CDS | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.4:66840071-66840090 | MS.gene94150:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.4:66839816-66839835 | MS.gene94150:intron | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5.4:66840064-66840083 | None:intergenic | 60.0% | |
| TGTGGTAACCACCTCCACCG+TGG | + | chr5.4:66839785-66839804 | None:intergenic | 60.0% | |
| ! | CACGGTGGTGGCTACAACCA+CGG | - | chr5.4:66839765-66839784 | MS.gene94150:intron | 60.0% |
| ! | GGTGGTGGCTACAACCATGG+TGG | - | chr5.4:66839717-66839736 | MS.gene94150:CDS | 60.0% |
| ! | GTCCCTAGCGGACATCACTG+AGG | + | chr5.4:66839331-66839350 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGAGGACACGG+TGG | - | chr5.4:66839885-66839904 | MS.gene94150:intron | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.4:66839927-66839946 | MS.gene94150:intron | 60.0% |
| !! | ACACGGTGCCGTGCAAACTG+AGG | - | chr5.4:66840142-66840161 | MS.gene94150:CDS | 60.0% |
| !! | CACGGTGGACATGGTGGACA+TGG | - | chr5.4:66840098-66840117 | MS.gene94150:CDS | 60.0% |
| !! | CATGGTGGACATGGTGGCCA+TGG | - | chr5.4:66840107-66840126 | MS.gene94150:CDS | 60.0% |
| !! | GGTGGACATGGTGGACATGG+TGG | - | chr5.4:66840101-66840120 | MS.gene94150:CDS | 60.0% |
| !! | GGTGGTGGCGGTTACAACCA+CGG | - | chr5.4:66839807-66839826 | MS.gene94150:intron | 60.0% |
| AACCACGGTGGAGGTGGCCA+CGG | - | chr5.4:66840080-66840099 | MS.gene94150:CDS | 65.0% | |
| CGTGGTTGTAGCCACCACCG+TGG | + | chr5.4:66839767-66839786 | None:intergenic | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | + | chr5.4:66840127-66840146 | None:intergenic | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5.4:66839936-66839955 | MS.gene94150:intron | 65.0% | |
| GGCGGTTACAACCACGGTGG+AGG | - | chr5.4:66839813-66839832 | MS.gene94150:intron | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | - | chr5.4:66839774-66839793 | MS.gene94150:intron | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | - | chr5.4:66840110-66840129 | MS.gene94150:CDS | 65.0% | |
| GGTGGAGGACACGGTGGTCA+CGG | - | chr5.4:66839891-66839910 | MS.gene94150:intron | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5.4:66839933-66839952 | MS.gene94150:intron | 65.0% | |
| GGTGGCTACAACCACGGTGG+AGG | - | chr5.4:66839771-66839790 | MS.gene94150:intron | 65.0% | |
| ! | GGTGGCGGTTACAACCACGG+TGG | - | chr5.4:66839810-66839829 | MS.gene94150:intron | 65.0% |
| ! | GGTGGTGGCTACAACCACGG+TGG | - | chr5.4:66839768-66839787 | MS.gene94150:intron | 65.0% |
| !! | AATGGTGGTGGGGGTCACGG+TGG | - | chr5.4:66839843-66839862 | MS.gene94150:intron | 65.0% |
| CACGGTGGTCACGGTGGAGG+TGG | - | chr5.4:66839858-66839877 | MS.gene94150:intron | 70.0% | |
| GGACACGGTGGTCACGGTGG+AGG | - | chr5.4:66839897-66839916 | MS.gene94150:intron | 70.0% | |
| GGAGGACACGGTGGTCACGG+TGG | - | chr5.4:66839894-66839913 | MS.gene94150:intron | 70.0% | |
| GGAGGTGGCCACGGTGGACA+TGG | - | chr5.4:66840089-66840108 | MS.gene94150:CDS | 70.0% | |
| GGTCACGGTGGTCACGGTGG+AGG | - | chr5.4:66839855-66839874 | MS.gene94150:intron | 70.0% | |
| GGTGGCCACGGTGGACATGG+TGG | - | chr5.4:66840092-66840111 | MS.gene94150:CDS | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | - | chr5.4:66840119-66840138 | MS.gene94150:CDS | 70.0% | |
| GGTGGGGGTCACGGTGGTCA+CGG | - | chr5.4:66839849-66839868 | MS.gene94150:intron | 70.0% | |
| CACCGTGGCCACCTCCACCG+TGG | + | chr5.4:66840085-66840104 | None:intergenic | 75.0% | |
| CACGGTGGAGGTGGCCACGG+TGG | - | chr5.4:66840083-66840102 | MS.gene94150:CDS | 75.0% | |
| GGGGGTCACGGTGGTCACGG+TGG | - | chr5.4:66839852-66839871 | MS.gene94150:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66839273 | 66840181 | 66839273 | ID=MS.gene94150 |
| chr5.4 | mRNA | 66839273 | 66840181 | 66839273 | ID=MS.gene94150.t1;Parent=MS.gene94150 |
| chr5.4 | exon | 66840073 | 66840181 | 66840073 | ID=MS.gene94150.t1.exon1;Parent=MS.gene94150.t1 |
| chr5.4 | CDS | 66840073 | 66840181 | 66840073 | ID=cds.MS.gene94150.t1;Parent=MS.gene94150.t1 |
| chr5.4 | exon | 66839273 | 66839778 | 66839273 | ID=MS.gene94150.t1.exon2;Parent=MS.gene94150.t1 |
| chr5.4 | CDS | 66839273 | 66839778 | 66839273 | ID=cds.MS.gene94150.t1;Parent=MS.gene94150.t1 |
| Gene Sequence |
| Protein sequence |
