Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70586.t1 | XP_013461056.1 | 100 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 5.70E-44 | 186.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70586.t1 | B7FH72 | 100.0 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 4.1e-44 | 186.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene70586 | -0.823551 | 1.30E-53 | -1.69E-46 |
| MS.gene049150 | MS.gene70586 | -0.892775 | 1.16E-74 | -1.69E-46 |
| MS.gene049151 | MS.gene70586 | -0.852891 | 3.43E-61 | -1.69E-46 |
| MS.gene049153 | MS.gene70586 | -0.898283 | 6.18E-77 | -1.69E-46 |
| MS.gene049260 | MS.gene70586 | -0.846062 | 2.75E-59 | -1.69E-46 |
| MS.gene049297 | MS.gene70586 | -0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene049378 | MS.gene70586 | -0.832487 | 9.19E-56 | -1.69E-46 |
| MS.gene049435 | MS.gene70586 | -0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene70586 | -0.819983 | 8.72E-53 | -1.69E-46 |
| MS.gene049910 | MS.gene70586 | -0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene049993 | MS.gene70586 | -0.812053 | 5.14E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene70586 | -0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene70586 | -0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene050168 | MS.gene70586 | -0.813858 | 2.07E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene70586 | -0.852096 | 5.78E-61 | -1.69E-46 |
| MS.gene050227 | MS.gene70586 | -0.846766 | 1.77E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene70586 | -0.850158 | 2.03E-60 | -1.69E-46 |
| MS.gene050426 | MS.gene70586 | 0.832462 | 9.32E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene70586 | -0.82587 | 3.70E-54 | -1.69E-46 |
| MS.gene050605 | MS.gene70586 | -0.847398 | 1.19E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene70586 | 0.890561 | 8.81E-74 | -1.69E-46 |
| MS.gene050642 | MS.gene70586 | -0.879421 | 1.26E-69 | -1.69E-46 |
| MS.gene050680 | MS.gene70586 | -0.844877 | 5.76E-59 | -1.69E-46 |
| MS.gene050750 | MS.gene70586 | -0.827907 | 1.21E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene70586 | -0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene70586 | -0.823284 | 1.50E-53 | -1.69E-46 |
| MS.gene051368 | MS.gene70586 | -0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene051370 | MS.gene70586 | -0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene051373 | MS.gene70586 | -0.839674 | 1.38E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene70586 | -0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene70586 | -0.884341 | 2.08E-71 | -1.69E-46 |
| MS.gene051983 | MS.gene70586 | -0.900808 | 5.06E-78 | -1.69E-46 |
| MS.gene052011 | MS.gene70586 | 0.826996 | 2.00E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene70586 | -0.854501 | 1.18E-61 | -1.69E-46 |
| MS.gene052188 | MS.gene70586 | -0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene70586 | -0.804896 | 1.73E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene70586 | -0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene70586 | -0.82417 | 9.33E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene70586 | -0.829278 | 5.63E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene70586 | -0.802516 | 5.41E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene70586 | -0.839199 | 1.83E-57 | -1.69E-46 |
| MS.gene053166 | MS.gene70586 | -0.816652 | 4.95E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene70586 | -0.845909 | 3.03E-59 | -1.69E-46 |
| MS.gene053494 | MS.gene70586 | -0.872439 | 3.18E-67 | -1.69E-46 |
| MS.gene053584 | MS.gene70586 | -0.832859 | 7.43E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene70586 | -0.838985 | 2.08E-57 | -1.69E-46 |
| MS.gene054183 | MS.gene70586 | -0.868056 | 8.67E-66 | -1.69E-46 |
| MS.gene054184 | MS.gene70586 | -0.800804 | 1.21E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene70586 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene70586 | -0.852005 | 6.13E-61 | -1.69E-46 |
| MS.gene054379 | MS.gene70586 | -0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene70586 | -0.820982 | 5.14E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene70586 | -0.825637 | 4.21E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene70586 | -0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene054713 | MS.gene70586 | -0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene70586 | -0.829269 | 5.66E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene70586 | -0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene70586 | -0.846175 | 2.56E-59 | -1.69E-46 |
| MS.gene055356 | MS.gene70586 | -0.829376 | 5.33E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene70586 | -0.823965 | 1.04E-53 | -1.69E-46 |
| MS.gene055367 | MS.gene70586 | -0.818354 | 2.05E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene70586 | -0.847332 | 1.24E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene70586 | -0.81029 | 1.24E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene70586 | -0.894013 | 3.67E-75 | -1.69E-46 |
| MS.gene05595 | MS.gene70586 | -0.83236 | 9.88E-56 | -1.69E-46 |
| MS.gene056447 | MS.gene70586 | -0.849455 | 3.20E-60 | -1.69E-46 |
| MS.gene056506 | MS.gene70586 | -0.841142 | 5.68E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene70586 | -0.834689 | 2.59E-56 | -1.69E-46 |
| MS.gene056899 | MS.gene70586 | 0.845303 | 4.42E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene70586 | -0.899316 | 2.24E-77 | -1.69E-46 |
| MS.gene057156 | MS.gene70586 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene70586 | -0.810571 | 1.08E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene70586 | -0.81857 | 1.83E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene70586 | -0.821694 | 3.52E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene70586 | -0.817464 | 3.25E-52 | -1.69E-46 |
| MS.gene057639 | MS.gene70586 | -0.814162 | 1.77E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene70586 | -0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene70586 | -0.816827 | 4.53E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene70586 | -0.81281 | 3.51E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene70586 | -0.806381 | 8.45E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene70586 | -0.801396 | 9.18E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene70586 | -0.858782 | 6.50E-63 | -1.69E-46 |
| MS.gene058146 | MS.gene70586 | -0.833919 | 4.04E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene70586 | -0.807721 | 4.40E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene70586 | -0.848246 | 6.93E-60 | -1.69E-46 |
| MS.gene058595 | MS.gene70586 | -0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene70586 | -0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene70586 | -0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene70586 | -0.800983 | 1.12E-48 | -1.69E-46 |
| MS.gene059128 | MS.gene70586 | -0.82834 | 9.49E-55 | -1.69E-46 |
| MS.gene059161 | MS.gene70586 | -0.8435 | 1.35E-58 | -1.69E-46 |
| MS.gene059162 | MS.gene70586 | -0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene70586 | -0.858611 | 7.32E-63 | -1.69E-46 |
| MS.gene059285 | MS.gene70586 | -0.852556 | 4.27E-61 | -1.69E-46 |
| MS.gene059420 | MS.gene70586 | -0.831231 | 1.88E-55 | -1.69E-46 |
| MS.gene059609 | MS.gene70586 | -0.90093 | 4.47E-78 | -1.69E-46 |
| MS.gene05984 | MS.gene70586 | -0.860148 | 2.53E-63 | -1.69E-46 |
| MS.gene060137 | MS.gene70586 | 0.825626 | 4.23E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene70586 | -0.802821 | 4.68E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene70586 | -0.850529 | 1.60E-60 | -1.69E-46 |
| MS.gene060685 | MS.gene70586 | -0.843894 | 1.06E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene70586 | -0.87795 | 4.16E-69 | -1.69E-46 |
| MS.gene060803 | MS.gene70586 | -0.839723 | 1.34E-57 | -1.69E-46 |
| MS.gene060942 | MS.gene70586 | -0.802659 | 5.05E-49 | -1.69E-46 |
| MS.gene060943 | MS.gene70586 | -0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene70586 | -0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene061002 | MS.gene70586 | -0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene70586 | -0.812417 | 4.28E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene70586 | 0.880693 | 4.45E-70 | -1.69E-46 |
| MS.gene061159 | MS.gene70586 | -0.850223 | 1.95E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70586.t1 | MTR_3g078590 | 100.000 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 2.56e-63 | 186 |
| MS.gene70586.t1 | MTR_3g085890 | 69.318 | 88 | 27 | 0 | 1 | 88 | 1 | 88 | 1.66e-43 | 136 |
| MS.gene70586.t1 | MTR_8g080060 | 69.318 | 88 | 27 | 0 | 1 | 88 | 1 | 88 | 4.04e-43 | 135 |
| MS.gene70586.t1 | MTR_7g016060 | 51.220 | 82 | 40 | 0 | 5 | 86 | 3 | 84 | 3.47e-29 | 100 |
| MS.gene70586.t1 | MTR_3g085890 | 63.934 | 61 | 22 | 0 | 27 | 87 | 1 | 61 | 1.80e-25 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70586.t1 | AT3G48140 | 74.118 | 85 | 22 | 0 | 4 | 88 | 3 | 87 | 1.26e-44 | 139 |
| MS.gene70586.t1 | AT3G29970 | 51.220 | 82 | 40 | 0 | 5 | 86 | 3 | 84 | 8.05e-30 | 101 |
| MS.gene70586.t1 | AT3G29970 | 47.059 | 68 | 36 | 0 | 18 | 85 | 1 | 68 | 2.24e-20 | 77.4 |
| MS.gene70586.t1 | AT3G29970 | 47.059 | 68 | 36 | 0 | 18 | 85 | 1 | 68 | 2.24e-20 | 77.4 |
Find 28 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATCAGTACCTGACTTC+AGG | 0.347160 | 3.1:+64388285 | None:intergenic |
| TACCCTCTGTTTGCTGCGGT+TGG | 0.396092 | 3.1:-64388360 | MS.gene70586:CDS |
| CTGCGGTTGGAGCTGCTGTT+GGG | 0.406881 | 3.1:-64388347 | MS.gene70586:CDS |
| GCTGCGGTTGGAGCTGCTGT+TGG | 0.426937 | 3.1:-64388348 | MS.gene70586:CDS |
| TTGAGGCCGGGCATAATCTC+TGG | 0.440854 | 3.1:+64387306 | None:intergenic |
| AACATCAGTACCTGACTTCA+GGG | 0.462667 | 3.1:+64388286 | None:intergenic |
| AACAAGCAGTCTCGAGCTGC+AGG | 0.464020 | 3.1:-64387402 | MS.gene70586:CDS |
| AGTGAAGAAGCTGTTGAGGC+CGG | 0.469984 | 3.1:+64387293 | None:intergenic |
| GTCTCGAGCTGCAGGAGTGT+TGG | 0.483795 | 3.1:-64387394 | MS.gene70586:CDS |
| GGGTCTGATCCAGCGATTGG+TGG | 0.513757 | 3.1:+64388474 | None:intergenic |
| AAATAACTTAGTTGCGACTT+GGG | 0.516597 | 3.1:+64387268 | None:intergenic |
| TTCTGTGTACTTCTCTCCCT+CGG | 0.519035 | 3.1:+64387362 | None:intergenic |
| CTCGGGTCTGATCCAGCGAT+TGG | 0.519677 | 3.1:+64388471 | None:intergenic |
| GTGAAGAAGCTGTTGAGGCC+GGG | 0.521542 | 3.1:+64387294 | None:intergenic |
| TATCCATGGCCACCAATCGC+TGG | 0.522115 | 3.1:-64388483 | None:intergenic |
| TCTGCATCAACCCTGAAGTC+AGG | 0.524860 | 3.1:-64388296 | MS.gene70586:intron |
| AAAATAACTTAGTTGCGACT+TGG | 0.526355 | 3.1:+64387267 | None:intergenic |
| GATGTTACGAACAAGTGAAA+AGG | 0.535731 | 3.1:+64388317 | None:intergenic |
| AGATCACCAGAGATTATGCC+CGG | 0.537901 | 3.1:-64387312 | MS.gene70586:CDS |
| GATCCAGCGATTGGTGGCCA+TGG | 0.584846 | 3.1:+64388480 | None:intergenic |
| CTCCAACCGCAGCAAACAGA+GGG | 0.612181 | 3.1:+64388358 | None:intergenic |
| GTGTTGGAGAACTTTGCCGA+GGG | 0.614956 | 3.1:-64387378 | MS.gene70586:CDS |
| GGTATACCCTCTGTTTGCTG+CGG | 0.632424 | 3.1:-64388364 | MS.gene70586:CDS |
| AGTGTTGGAGAACTTTGCCG+AGG | 0.642190 | 3.1:-64387379 | MS.gene70586:CDS |
| GGTCAGTGAAGAAGCTGTTG+AGG | 0.648101 | 3.1:+64387289 | None:intergenic |
| GCTCCAACCGCAGCAAACAG+AGG | 0.651727 | 3.1:+64388357 | None:intergenic |
| CAATCGCTGGATCAGACCCG+AGG | 0.698764 | 3.1:-64388470 | MS.gene70586:intron |
| AGTACACAGAACATTTGCTG+AGG | 0.706764 | 3.1:-64387350 | MS.gene70586:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATTAACAAAATTTAAT+GGG | - | chr3.1:64387706-64387725 | MS.gene70586:intron | 10.0% |
| !! | TAGATATTAACAAAATTTAA+TGG | - | chr3.1:64387705-64387724 | MS.gene70586:intron | 10.0% |
| !! | ATTAATCTCTAATATCAAAT+AGG | + | chr3.1:64387957-64387976 | None:intergenic | 15.0% |
| !! | TTAATCTCTAATATCAAATA+GGG | + | chr3.1:64387956-64387975 | None:intergenic | 15.0% |
| !!! | AGAGATTAATTTTTATTCAT+TGG | - | chr3.1:64387967-64387986 | MS.gene70586:intron | 15.0% |
| !!! | GAATATTCCTTTTTTATTTT+TGG | - | chr3.1:64387626-64387645 | MS.gene70586:intron | 15.0% |
| !! | AATTAAATAACTCATGTATC+TGG | - | chr3.1:64387778-64387797 | MS.gene70586:intron | 20.0% |
| !! | ACAAATTGTGAAAATTTAAG+CGG | + | chr3.1:64387682-64387701 | None:intergenic | 20.0% |
| !! | AGGAAAACCAAAAATAAAAA+AGG | + | chr3.1:64387636-64387655 | None:intergenic | 20.0% |
| !! | CTAATCGGATAATTAATTAA+TGG | + | chr3.1:64387595-64387614 | None:intergenic | 20.0% |
| !! | GATACATGAGTTATTTAATT+TGG | + | chr3.1:64387778-64387797 | None:intergenic | 20.0% |
| !! | TATACCTATAACAAAAAAGA+TGG | + | chr3.1:64387375-64387394 | None:intergenic | 20.0% |
| !!! | GATTAATTTTTATTCATTGG+AGG | - | chr3.1:64387970-64387989 | MS.gene70586:intron | 20.0% |
| !!! | TCCTAAAAATCACTTTTTTA+AGG | + | chr3.1:64387826-64387845 | None:intergenic | 20.0% |
| ! | ATTCCATCATGTTTACTAAT+CGG | + | chr3.1:64387610-64387629 | None:intergenic | 25.0% |
| ! | TGAGATATAACTTAAAAGAG+TGG | - | chr3.1:64388046-64388065 | MS.gene70586:intron | 25.0% |
| !! | AATGAAAACTTTTATCTCAC+AGG | - | chr3.1:64388236-64388255 | MS.gene70586:intron | 25.0% |
| !! | ATGAAAACTTTTATCTCACA+GGG | - | chr3.1:64388237-64388256 | MS.gene70586:intron | 25.0% |
| !! | ATGTATGTTTGTTCTTTTGA+TGG | - | chr3.1:64388318-64388337 | MS.gene70586:CDS | 25.0% |
| !! | GCCTTAAAAAAGTGATTTTT+AGG | - | chr3.1:64387822-64387841 | MS.gene70586:intron | 25.0% |
| !! | TGTATGTTTGTTCTTTTGAT+GGG | - | chr3.1:64388319-64388338 | MS.gene70586:CDS | 25.0% |
| !!! | AATGGTGATTTTAAAGTTGT+TGG | - | chr3.1:64387927-64387946 | MS.gene70586:intron | 25.0% |
| !!! | TGATTGATTTTTCTCTTCTT+TGG | - | chr3.1:64387521-64387540 | MS.gene70586:intron | 25.0% |
| !!! | TTCACCATCTTTTTTGTTAT+AGG | - | chr3.1:64387368-64387387 | MS.gene70586:CDS | 25.0% |
| !!! | TTGTTGTTTAATTTTTAGCC+AGG | - | chr3.1:64388269-64388288 | MS.gene70586:intron | 25.0% |
| !!! | TTTAATTTTTAGCCAGGATT+TGG | - | chr3.1:64388275-64388294 | MS.gene70586:intron | 25.0% |
| ACGAAATGCAAAGTAGTAAA+TGG | + | chr3.1:64387334-64387353 | None:intergenic | 30.0% | |
| CAATCATCGGATTATTATCA+TGG | + | chr3.1:64387858-64387877 | None:intergenic | 30.0% | |
| CATCATATCATTTCTCAGAT+AGG | + | chr3.1:64387656-64387675 | None:intergenic | 30.0% | |
| TATCCGATTAGTAAACATGA+TGG | - | chr3.1:64387604-64387623 | MS.gene70586:intron | 30.0% | |
| !!! | TTGTTCTTTTGATGGGTTTA+GGG | - | chr3.1:64388326-64388345 | MS.gene70586:CDS | 30.0% |
| !!! | TTTGTTCTTTTGATGGGTTT+AGG | - | chr3.1:64388325-64388344 | MS.gene70586:CDS | 30.0% |
| AAATCCATGATATGTTTGCC+TGG | - | chr3.1:64388134-64388153 | MS.gene70586:intron | 35.0% | |
| AACTTAAAAGAGTGGCATCA+TGG | - | chr3.1:64388054-64388073 | MS.gene70586:intron | 35.0% | |
| ACTCATGTATCTGGACTAAA+TGG | - | chr3.1:64387787-64387806 | MS.gene70586:intron | 35.0% | |
| GACAAATCAGCTTCAATCAT+CGG | + | chr3.1:64387871-64387890 | None:intergenic | 35.0% | |
| GATGTTACGAACAAGTGAAA+AGG | + | chr3.1:64387439-64387458 | None:intergenic | 35.0% | |
| TGCATTTCGTAAGAGAGTTA+GGG | - | chr3.1:64387344-64387363 | MS.gene70586:CDS | 35.0% | |
| TGGCAAAATACAGATCGAAA+AGG | + | chr3.1:64387314-64387333 | None:intergenic | 35.0% | |
| TTGCATTTCGTAAGAGAGTT+AGG | - | chr3.1:64387343-64387362 | MS.gene70586:CDS | 35.0% | |
| TTTGCACAAATAACGTGGAA+TGG | - | chr3.1:64387909-64387928 | MS.gene70586:intron | 35.0% | |
| ! | CGAATTTTGCACAAATAACG+TGG | - | chr3.1:64387904-64387923 | MS.gene70586:intron | 35.0% |
| ! | GAGTTTGACTTATCTCAGAT+CGG | - | chr3.1:64387543-64387562 | MS.gene70586:intron | 35.0% |
| ! | TGGTGTTTGAAGGAGTATAA+TGG | - | chr3.1:64388295-64388314 | MS.gene70586:intron | 35.0% |
| AAACATCAGTACCTGACTTC+AGG | + | chr3.1:64387471-64387490 | None:intergenic | 40.0% | |
| AACATCAGTACCTGACTTCA+GGG | + | chr3.1:64387470-64387489 | None:intergenic | 40.0% | |
| AAGTCGCTTATAGAGAGAGT+AGG | + | chr3.1:64387747-64387766 | None:intergenic | 40.0% | |
| CAACTTCATTTCACTCAACC+AGG | + | chr3.1:64388155-64388174 | None:intergenic | 40.0% | |
| CTGGTTGAGTGAAATGAAGT+TGG | - | chr3.1:64388153-64388172 | MS.gene70586:intron | 40.0% | |
| TCAACCAGGCAAACATATCA+TGG | + | chr3.1:64388141-64388160 | None:intergenic | 40.0% | |
| ! | AGTACACAGAACATTTGCTG+AGG | - | chr3.1:64388403-64388422 | MS.gene70586:intron | 40.0% |
| AGATCACCAGAGATTATGCC+CGG | - | chr3.1:64388441-64388460 | MS.gene70586:intron | 45.0% | |
| AGATCGAAAAGGACTCACCT+CGG | + | chr3.1:64387303-64387322 | None:intergenic | 45.0% | |
| CTCCTTCAAACACCAAATCC+TGG | + | chr3.1:64388290-64388309 | None:intergenic | 45.0% | |
| TTCTGTGTACTTCTCTCCCT+CGG | + | chr3.1:64388394-64388413 | None:intergenic | 45.0% | |
| !! | AGCCAGGATTTGGTGTTTGA+AGG | - | chr3.1:64388285-64388304 | MS.gene70586:intron | 45.0% |
| AGTGAAGAAGCTGTTGAGGC+CGG | + | chr3.1:64388463-64388482 | None:intergenic | 50.0% | |
| GATCGAAAAGGACTCACCTC+GGG | + | chr3.1:64387302-64387321 | None:intergenic | 50.0% | |
| GGTCAGTGAAGAAGCTGTTG+AGG | + | chr3.1:64388467-64388486 | None:intergenic | 50.0% | |
| GTGTTGGAGAACTTTGCCGA+GGG | - | chr3.1:64388375-64388394 | MS.gene70586:intron | 50.0% | |
| TCTGCATCAACCCTGAAGTC+AGG | - | chr3.1:64387457-64387476 | MS.gene70586:intron | 50.0% | |
| ! | AGTGTTGGAGAACTTTGCCG+AGG | - | chr3.1:64388374-64388393 | MS.gene70586:intron | 50.0% |
| ! | GGTATACCCTCTGTTTGCTG+CGG | - | chr3.1:64387389-64387408 | MS.gene70586:CDS | 50.0% |
| AACAAGCAGTCTCGAGCTGC+AGG | - | chr3.1:64388351-64388370 | MS.gene70586:CDS | 55.0% | |
| CTCCAACCGCAGCAAACAGA+GGG | + | chr3.1:64387398-64387417 | None:intergenic | 55.0% | |
| GTGAAGAAGCTGTTGAGGCC+GGG | + | chr3.1:64388462-64388481 | None:intergenic | 55.0% | |
| TTGAGGCCGGGCATAATCTC+TGG | + | chr3.1:64388450-64388469 | None:intergenic | 55.0% | |
| ! | TACCCTCTGTTTGCTGCGGT+TGG | - | chr3.1:64387393-64387412 | MS.gene70586:CDS | 55.0% |
| CAATCGCTGGATCAGACCCG+AGG | - | chr3.1:64387283-64387302 | MS.gene70586:CDS | 60.0% | |
| CTCGGGTCTGATCCAGCGAT+TGG | + | chr3.1:64387285-64387304 | None:intergenic | 60.0% | |
| CTGCGGTTGGAGCTGCTGTT+GGG | - | chr3.1:64387406-64387425 | MS.gene70586:CDS | 60.0% | |
| GCTCCAACCGCAGCAAACAG+AGG | + | chr3.1:64387399-64387418 | None:intergenic | 60.0% | |
| GGGTCTGATCCAGCGATTGG+TGG | + | chr3.1:64387282-64387301 | None:intergenic | 60.0% | |
| ! | GTCTCGAGCTGCAGGAGTGT+TGG | - | chr3.1:64388359-64388378 | MS.gene70586:CDS | 60.0% |
| GCTGCGGTTGGAGCTGCTGT+TGG | - | chr3.1:64387405-64387424 | MS.gene70586:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64387275 | 64388500 | 64387275 | ID=MS.gene70586 |
| chr3.1 | mRNA | 64387275 | 64388500 | 64387275 | ID=MS.gene70586.t1;Parent=MS.gene70586 |
| chr3.1 | exon | 64388471 | 64388500 | 64388471 | ID=MS.gene70586.t1.exon1;Parent=MS.gene70586.t1 |
| chr3.1 | CDS | 64388471 | 64388500 | 64388471 | ID=cds.MS.gene70586.t1;Parent=MS.gene70586.t1 |
| chr3.1 | exon | 64388297 | 64388385 | 64388297 | ID=MS.gene70586.t1.exon2;Parent=MS.gene70586.t1 |
| chr3.1 | CDS | 64388297 | 64388385 | 64388297 | ID=cds.MS.gene70586.t1;Parent=MS.gene70586.t1 |
| chr3.1 | exon | 64387275 | 64387428 | 64387275 | ID=MS.gene70586.t1.exon3;Parent=MS.gene70586.t1 |
| chr3.1 | CDS | 64387275 | 64387428 | 64387275 | ID=cds.MS.gene70586.t1;Parent=MS.gene70586.t1 |
| Gene Sequence |
| Protein sequence |
