Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27393.t1 | XP_013452780.1 | 98.8 | 499 | 6 | 0 | 1 | 499 | 1 | 499 | 2.80E-289 | 1003.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27393.t1 | P54767 | 76.8 | 505 | 100 | 2 | 6 | 499 | 4 | 502 | 4.1e-233 | 808.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27393.t1 | A0A072UCM6 | 98.8 | 499 | 6 | 0 | 1 | 499 | 1 | 499 | 2.0e-289 | 1003.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene27393 | 0.838486 | 2.80E-57 | -1.69E-46 |
| MS.gene049151 | MS.gene27393 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene27393 | 0.828231 | 1.01E-54 | -1.69E-46 |
| MS.gene049233 | MS.gene27393 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene27393 | 0.878573 | 2.52E-69 | -1.69E-46 |
| MS.gene049378 | MS.gene27393 | 0.845518 | 3.86E-59 | -1.69E-46 |
| MS.gene049382 | MS.gene27393 | 0.840023 | 1.12E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene27393 | 0.852536 | 4.33E-61 | -1.69E-46 |
| MS.gene050128 | MS.gene27393 | 0.814994 | 1.16E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene27393 | 0.836207 | 1.07E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene27393 | 0.820815 | 5.62E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene27393 | 0.822119 | 2.81E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene27393 | 0.812736 | 3.65E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene27393 | -0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene27393 | 0.801953 | 7.06E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene27393 | -0.824877 | 6.36E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene27393 | -0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene27393 | 0.80736 | 5.25E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene27393 | 0.870291 | 1.63E-66 | -1.69E-46 |
| MS.gene050763 | MS.gene27393 | 0.871183 | 8.30E-67 | -1.69E-46 |
| MS.gene050807 | MS.gene27393 | 0.823833 | 1.12E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene27393 | 0.802571 | 5.27E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene27393 | 0.832364 | 9.86E-56 | -1.69E-46 |
| MS.gene05119 | MS.gene27393 | -0.847349 | 1.22E-59 | -1.69E-46 |
| MS.gene051535 | MS.gene27393 | 0.825527 | 4.47E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene27393 | 0.809432 | 1.90E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene27393 | 0.820302 | 7.37E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene27393 | 0.824679 | 7.08E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene27393 | 0.821402 | 4.11E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene27393 | 0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene27393 | 0.812984 | 3.22E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene27393 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene27393 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene27393 | 0.830457 | 2.91E-55 | -1.69E-46 |
| MS.gene053073 | MS.gene27393 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene27393 | 0.828439 | 8.98E-55 | -1.69E-46 |
| MS.gene053216 | MS.gene27393 | 0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene27393 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene053630 | MS.gene27393 | 0.81217 | 4.85E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene27393 | 0.856273 | 3.60E-62 | -1.69E-46 |
| MS.gene054379 | MS.gene27393 | 0.877323 | 6.89E-69 | -1.69E-46 |
| MS.gene054473 | MS.gene27393 | 0.833145 | 6.31E-56 | -1.69E-46 |
| MS.gene054542 | MS.gene27393 | 0.805867 | 1.08E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene27393 | 0.875173 | 3.80E-68 | -1.69E-46 |
| MS.gene054942 | MS.gene27393 | 0.807984 | 3.87E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene27393 | 0.832195 | 1.09E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene27393 | 0.829179 | 5.95E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene27393 | 0.822975 | 1.78E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene27393 | 0.817422 | 3.32E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene27393 | 0.823283 | 1.51E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene27393 | 0.802213 | 6.24E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene27393 | 0.803004 | 4.29E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene27393 | -0.830323 | 3.13E-55 | -1.69E-46 |
| MS.gene056875 | MS.gene27393 | 0.820344 | 7.21E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene27393 | 0.815308 | 9.88E-52 | -1.69E-46 |
| MS.gene057200 | MS.gene27393 | 0.81012 | 1.35E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene27393 | 0.830391 | 3.01E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene27393 | 0.821154 | 4.70E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene27393 | 0.800448 | 1.43E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene27393 | 0.826179 | 3.13E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene27393 | 0.854594 | 1.11E-61 | -1.69E-46 |
| MS.gene05761 | MS.gene27393 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene057665 | MS.gene27393 | 0.800397 | 1.47E-48 | -1.69E-46 |
| MS.gene057690 | MS.gene27393 | 0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene057750 | MS.gene27393 | 0.833598 | 4.87E-56 | -1.69E-46 |
| MS.gene057754 | MS.gene27393 | 0.835529 | 1.59E-56 | -1.69E-46 |
| MS.gene058002 | MS.gene27393 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene27393 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene058142 | MS.gene27393 | 0.812153 | 4.89E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene27393 | 0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene27393 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene058749 | MS.gene27393 | 0.826415 | 2.75E-54 | -1.69E-46 |
| MS.gene058833 | MS.gene27393 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene058949 | MS.gene27393 | 0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene27393 | 0.814969 | 1.17E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene27393 | 0.844561 | 7.00E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene27393 | 0.842939 | 1.90E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene27393 | 0.807831 | 4.17E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene27393 | 0.817731 | 2.83E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene27393 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene27393 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene27393 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene27393 | 0.815178 | 1.06E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene27393 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene27393 | 0.813993 | 1.93E-51 | -1.69E-46 |
| MS.gene060480 | MS.gene27393 | 0.829677 | 4.50E-55 | -1.69E-46 |
| MS.gene060495 | MS.gene27393 | 0.841031 | 6.08E-58 | -1.69E-46 |
| MS.gene060683 | MS.gene27393 | 0.839559 | 1.47E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene27393 | 0.831696 | 1.44E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene27393 | 0.822564 | 2.21E-53 | -1.69E-46 |
| MS.gene060943 | MS.gene27393 | 0.823952 | 1.05E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene27393 | 0.825374 | 4.85E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene27393 | 0.82461 | 7.35E-54 | -1.69E-46 |
| MS.gene061113 | MS.gene27393 | 0.811041 | 8.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27393.t1 | MTR_6g075210 | 98.798 | 499 | 6 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1027 |
| MS.gene27393.t1 | MTR_3g064740 | 74.560 | 511 | 115 | 4 | 1 | 499 | 1 | 508 | 0.0 | 786 |
| MS.gene27393.t1 | MTR_6g075210 | 99.180 | 366 | 3 | 0 | 134 | 499 | 1 | 366 | 0.0 | 753 |
| MS.gene27393.t1 | MTR_5g077090 | 72.358 | 492 | 128 | 2 | 16 | 499 | 4 | 495 | 0.0 | 752 |
| MS.gene27393.t1 | MTR_6g075210 | 99.349 | 307 | 2 | 0 | 193 | 499 | 1 | 307 | 0.0 | 630 |
| MS.gene27393.t1 | MTR_3g064740 | 75.188 | 399 | 93 | 1 | 99 | 491 | 1 | 399 | 0.0 | 626 |
| MS.gene27393.t1 | MTR_7g022310 | 25.895 | 363 | 239 | 11 | 84 | 436 | 157 | 499 | 4.82e-20 | 93.6 |
| MS.gene27393.t1 | MTR_5g075840 | 45.977 | 87 | 37 | 1 | 367 | 443 | 30 | 116 | 9.25e-15 | 72.0 |
| MS.gene27393.t1 | MTR_5g075820 | 76.923 | 39 | 9 | 0 | 255 | 293 | 15 | 53 | 3.42e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27393.t1 | AT2G02010 | 77.778 | 495 | 101 | 2 | 1 | 495 | 1 | 486 | 0.0 | 813 |
| MS.gene27393.t1 | AT2G02010 | 77.778 | 495 | 101 | 2 | 1 | 495 | 53 | 538 | 0.0 | 813 |
| MS.gene27393.t1 | AT5G17330 | 76.228 | 509 | 104 | 4 | 1 | 499 | 1 | 502 | 0.0 | 796 |
| MS.gene27393.t1 | AT3G17760 | 78.208 | 491 | 100 | 3 | 12 | 499 | 8 | 494 | 0.0 | 796 |
| MS.gene27393.t1 | AT3G17760 | 78.208 | 491 | 100 | 3 | 12 | 499 | 8 | 494 | 0.0 | 796 |
| MS.gene27393.t1 | AT2G02000 | 74.899 | 494 | 115 | 2 | 1 | 494 | 1 | 485 | 0.0 | 786 |
| MS.gene27393.t1 | AT1G65960 | 76.647 | 501 | 108 | 4 | 1 | 499 | 1 | 494 | 0.0 | 785 |
| MS.gene27393.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene27393.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene27393.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene27393.t1 | AT3G17720 | 74.074 | 162 | 39 | 1 | 94 | 255 | 27 | 185 | 9.12e-83 | 255 |
| MS.gene27393.t1 | AT1G27980 | 24.586 | 362 | 241 | 11 | 84 | 434 | 160 | 500 | 8.13e-17 | 83.6 |
Find 104 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTGTGTTGCAGCCATTT+TGG | 0.165886 | 6.4:-50417847 | MS.gene27393:CDS |
| CTGGTATTGGTTGGGTTGTT+TGG | 0.223066 | 6.4:-50417608 | MS.gene27393:CDS |
| TTCTCTACCCTGATCTTCTA+TGG | 0.235227 | 6.4:-50417695 | MS.gene27393:CDS |
| ATCTGATATGCTGCATCTTT+TGG | 0.270173 | 6.4:+50420404 | None:intergenic |
| TCCTGTCACCACTGAGCTTC+AGG | 0.282193 | 6.4:-50420246 | MS.gene27393:intron |
| AACCGCAACATGAGCATCTT+TGG | 0.297910 | 6.4:+50416688 | None:intergenic |
| CTCAATACTACCAGTTTATA+CGG | 0.300912 | 6.4:-50417252 | MS.gene27393:CDS |
| TAACAAGAATTATGTTGATA+TGG | 0.304779 | 6.4:-50420276 | MS.gene27393:CDS |
| CTGTCCTCCGAGTGGTGATT+AGG | 0.312016 | 6.4:-50416802 | MS.gene27393:CDS |
| AATATACTACACAGGTTTGT+TGG | 0.331203 | 6.4:-50417977 | MS.gene27393:intron |
| GATAAGCCTAACATAGTTAC+TGG | 0.334663 | 6.4:-50419147 | MS.gene27393:CDS |
| AGAGTCAAGCTGAGATTCTT+AGG | 0.358334 | 6.4:-50416622 | MS.gene27393:CDS |
| CGGAAATCCCATAGAAGATC+AGG | 0.359620 | 6.4:+50417687 | None:intergenic |
| GGTCTTGTTTACCCTGGTAT+TGG | 0.363471 | 6.4:-50417621 | MS.gene27393:CDS |
| GAGGCATAAAGCTGACTTGC+CGG | 0.372412 | 6.4:-50417586 | MS.gene27393:CDS |
| GGTCAGCGTTGAACCCAAAA+TGG | 0.377604 | 6.4:+50417833 | None:intergenic |
| AATGATGAGTTGATGTTAGA+TGG | 0.378531 | 6.4:-50420377 | MS.gene27393:CDS |
| CATCTATTCAATGCTCCTAT+TGG | 0.381425 | 6.4:-50419288 | MS.gene27393:CDS |
| TGGCTTCATTTGTTACTACT+TGG | 0.383718 | 6.4:-50420337 | MS.gene27393:CDS |
| GCAGTTTCCTCTTCACCAAT+AGG | 0.385794 | 6.4:+50419273 | None:intergenic |
| ATATACTACACAGGTTTGTT+GGG | 0.396367 | 6.4:-50417976 | MS.gene27393:intron |
| TTCTAGATACGTGCGTGAAC+AGG | 0.406297 | 6.4:-50420548 | MS.gene27393:CDS |
| ACCATTTCAACAGCTTTCAA+TGG | 0.408300 | 6.4:+50417882 | None:intergenic |
| TGTCCTCCGAGTGGTGATTA+GGG | 0.420453 | 6.4:-50416801 | MS.gene27393:CDS |
| CGAAGCCTAGCCGTATAAAC+TGG | 0.424976 | 6.4:+50417242 | None:intergenic |
| TTGTTTACCCTGGTATTGGT+TGG | 0.425703 | 6.4:-50417617 | MS.gene27393:CDS |
| AGAAGATCAGGGTAGAGAAA+TGG | 0.425931 | 6.4:+50417699 | None:intergenic |
| AAAATACGGGTGGATAGTTC+CGG | 0.431504 | 6.4:-50416858 | MS.gene27393:CDS |
| TGTTTACCCTGGTATTGGTT+GGG | 0.431991 | 6.4:-50417616 | MS.gene27393:CDS |
| GCAGACCATTTGAGAAAATA+CGG | 0.437901 | 6.4:-50416872 | MS.gene27393:CDS |
| ACTATGTTAGGCTTATCATA+TGG | 0.438480 | 6.4:+50419153 | None:intergenic |
| AAGGAAGGAATTGAGAAAAC+AGG | 0.440850 | 6.4:-50416983 | MS.gene27393:CDS |
| AAGCTGAGATTCTTAGGTAC+TGG | 0.444819 | 6.4:-50416616 | MS.gene27393:CDS |
| TCTCTACCCTGATCTTCTAT+GGG | 0.446103 | 6.4:-50417694 | MS.gene27393:CDS |
| TTCATTTGTTACTACTTGGA+TGG | 0.447228 | 6.4:-50420333 | MS.gene27393:CDS |
| AACGCTGACCGGAGAGTTTG+AGG | 0.448685 | 6.4:-50417820 | MS.gene27393:CDS |
| GTACTTTGAGGTTGAGCTAA+AGG | 0.449977 | 6.4:-50417940 | MS.gene27393:CDS |
| TGGAAAACCAAGGCTTAACT+TGG | 0.451331 | 6.4:-50420357 | MS.gene27393:CDS |
| TTAGCTCCAGTAACTATGTT+AGG | 0.451511 | 6.4:+50419141 | None:intergenic |
| TACTGGAAGAAGCTTGTTGA+TGG | 0.452812 | 6.4:-50416599 | MS.gene27393:CDS |
| GAGAAATTCAATGTGAAAGT+TGG | 0.460930 | 6.4:+50417522 | None:intergenic |
| CTTGTTGATGGCAAGAGAGT+TGG | 0.470062 | 6.4:-50416587 | MS.gene27393:CDS |
| GTATTGGTTGGGTTGTTTGG+AGG | 0.473665 | 6.4:-50417605 | MS.gene27393:CDS |
| ATGTAGATGCTGCGAGTGGC+GGG | 0.475660 | 6.4:-50417731 | MS.gene27393:CDS |
| AATGAAGCCAAGTTAAGCCT+TGG | 0.475959 | 6.4:+50420350 | None:intergenic |
| AAAATTTGCCAGGTACTTTG+AGG | 0.476874 | 6.4:-50417952 | MS.gene27393:CDS |
| GCAGTAGGTGTTGGAACTGT+AGG | 0.480901 | 6.4:-50419252 | MS.gene27393:CDS |
| TCTTTGGAATTGATAGAACT+TGG | 0.481455 | 6.4:+50416704 | None:intergenic |
| CAAGAGAGTTGGAGCATGCT+AGG | 0.485182 | 6.4:-50416576 | None:intergenic |
| CAAACAACCCAACCAATACC+AGG | 0.491052 | 6.4:+50417609 | None:intergenic |
| CTCGCAGCATCTACATGAAT+CGG | 0.494467 | 6.4:+50417738 | None:intergenic |
| TCCATTGAAAGCTGTTGAAA+TGG | 0.494508 | 6.4:-50417883 | MS.gene27393:CDS |
| GTTTATACGGCTAGGCTTCG+AGG | 0.499173 | 6.4:-50417239 | MS.gene27393:intron |
| AAAATTGTCTCCAAGGACAT+AGG | 0.500052 | 6.4:-50416953 | MS.gene27393:CDS |
| ATGGGATTTCCGTTTGCCGT+TGG | 0.504123 | 6.4:-50417676 | MS.gene27393:CDS |
| CATGTAGATGCTGCGAGTGG+CGG | 0.508504 | 6.4:-50417732 | MS.gene27393:CDS |
| TGCGTCCGCTGGCATTGTGT+AGG | 0.512284 | 6.4:+50416835 | None:intergenic |
| ACCTGAAGCTCAGTGGTGAC+AGG | 0.517726 | 6.4:+50420245 | None:intergenic |
| AAGGTTTAAAATTGTCTCCA+AGG | 0.518110 | 6.4:-50416960 | MS.gene27393:CDS |
| TCCGCTGGCATTGTGTAGGC+CGG | 0.520444 | 6.4:+50416839 | None:intergenic |
| CAATGCTCCTATTGGTGAAG+AGG | 0.522077 | 6.4:-50419280 | MS.gene27393:CDS |
| AAGTGGCACACCTATGTCCT+TGG | 0.528819 | 6.4:+50416943 | None:intergenic |
| TGAGTGTGATAAGCTTATCA+TGG | 0.535116 | 6.4:-50420306 | MS.gene27393:CDS |
| GCTGCTGTCTTTCAGAGAGA+AGG | 0.536335 | 6.4:+50416916 | None:intergenic |
| GAGGAAACTGCAGTAGGTGT+TGG | 0.536508 | 6.4:-50419261 | MS.gene27393:CDS |
| CAGTAGGTGTTGGAACTGTA+GGG | 0.543728 | 6.4:-50419251 | MS.gene27393:CDS |
| GGAAGATTTCAGCTGCAGCT+TGG | 0.547015 | 6.4:-50416780 | MS.gene27393:CDS |
| AAATGTGATGGAAAATTGCT+TGG | 0.550366 | 6.4:-50417023 | MS.gene27393:CDS |
| AATGTTAGCGGTCACAAGTA+CGG | 0.552630 | 6.4:-50417642 | MS.gene27393:CDS |
| CACAGAGGATTACTATGTGA+TGG | 0.560082 | 6.4:-50417907 | MS.gene27393:CDS |
| TAGCTCAACCTCAAAGTACC+TGG | 0.560216 | 6.4:+50417944 | None:intergenic |
| CTTCACATCCTCAAACTCTC+CGG | 0.561969 | 6.4:+50417812 | None:intergenic |
| AAAAGAACAAGGAGACAGGA+TGG | 0.565661 | 6.4:-50417767 | MS.gene27393:CDS |
| GTGAAAAGTATCAATGTTAG+CGG | 0.565895 | 6.4:-50417654 | MS.gene27393:CDS |
| AGAAGCAAAAGTGCATGCTA+TGG | 0.570371 | 6.4:+50420567 | None:intergenic |
| TTCACATTGAATTTCTCCAA+AGG | 0.571801 | 6.4:-50417516 | MS.gene27393:intron |
| TCAGAGGCAATAATGCTAGC+TGG | 0.572476 | 6.4:-50419225 | MS.gene27393:CDS |
| TTCCAAAGATGCTCATGTTG+CGG | 0.577794 | 6.4:-50416690 | MS.gene27393:CDS |
| CAAAATGGCTGCAACACAGA+TGG | 0.582491 | 6.4:+50417848 | None:intergenic |
| GGCGAACACAAGAATTCTGA+AGG | 0.590261 | 6.4:-50417002 | MS.gene27393:CDS |
| AAAGAACAAGGAGACAGGAT+GGG | 0.595274 | 6.4:-50417766 | MS.gene27393:CDS |
| AACACAAGAATTCTGAAGGA+AGG | 0.596220 | 6.4:-50416998 | MS.gene27393:CDS |
| AGTTACTGGAGCTAATGTGC+AGG | 0.605359 | 6.4:-50419133 | MS.gene27393:intron |
| ATGATAAGCTTATCACACTC+AGG | 0.609818 | 6.4:+50420308 | None:intergenic |
| AAGGAATTGAGAAAACAGGA+AGG | 0.618569 | 6.4:-50416979 | MS.gene27393:CDS |
| TACTACCAGTTTATACGGCT+AGG | 0.622804 | 6.4:-50417247 | MS.gene27393:CDS |
| GGAAATCCCATAGAAGATCA+GGG | 0.625993 | 6.4:+50417688 | None:intergenic |
| CAGACCATTTGAGAAAATAC+GGG | 0.628218 | 6.4:-50416871 | MS.gene27393:CDS |
| AAGTACGGTCTTGTTTACCC+TGG | 0.636562 | 6.4:-50417627 | MS.gene27393:CDS |
| ACCATTTGAGAAAATACGGG+TGG | 0.649671 | 6.4:-50416868 | MS.gene27393:CDS |
| GGTGAAGAGGAAACTGCAGT+AGG | 0.652830 | 6.4:-50419267 | MS.gene27393:CDS |
| TTCAGAGAGAAGGCTACAAG+TGG | 0.654016 | 6.4:+50416926 | None:intergenic |
| AATCTTCCCTAATCACCACT+CGG | 0.661532 | 6.4:+50416795 | None:intergenic |
| TGGAACTGTAGGGTCATCAG+AGG | 0.671933 | 6.4:-50419241 | MS.gene27393:CDS |
| CAGACTAAGAGAAAATCAGA+AGG | 0.687264 | 6.4:-50419180 | MS.gene27393:CDS |
| TGATGTTAGATGGAAAACCA+AGG | 0.691803 | 6.4:-50420367 | MS.gene27393:CDS |
| TCCGGCCTACACAATGCCAG+CGG | 0.698888 | 6.4:-50416840 | MS.gene27393:CDS |
| AAACAACCCAACCAATACCA+GGG | 0.700278 | 6.4:+50417610 | None:intergenic |
| TAAACAAACCTGAAGCTCAG+TGG | 0.702836 | 6.4:+50420238 | None:intergenic |
| ACACATCGCTGTCCTCCGAG+TGG | 0.704085 | 6.4:-50416810 | MS.gene27393:CDS |
| ATTCATGTAGATGCTGCGAG+TGG | 0.706666 | 6.4:-50417735 | MS.gene27393:CDS |
| TATCGCGAGTGAGACAAGTG+AGG | 0.713496 | 6.4:-50416666 | MS.gene27393:CDS |
| CTTCCCTAATCACCACTCGG+AGG | 0.723923 | 6.4:+50416798 | None:intergenic |
| AAAGGAAGTGAAACTCACAG+AGG | 0.773932 | 6.4:-50417922 | MS.gene27393:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAATCTAATTTTTTAAT+CGG | + | chr6.4:50417467-50417486 | None:intergenic | 10.0% |
| !! | CAATCTATCATAATAAAAAA+AGG | + | chr6.4:50417527-50417546 | None:intergenic | 15.0% |
| !! | AGAAATACAAAGCAATATTA+AGG | + | chr6.4:50419892-50419911 | None:intergenic | 20.0% |
| !! | CAAAGGTAATAATAGTTAAA+CGG | - | chr6.4:50419691-50419710 | MS.gene27393:intron | 20.0% |
| !! | CAATTAAATTCTTAAGTATG+TGG | - | chr6.4:50419764-50419783 | MS.gene27393:intron | 20.0% |
| !! | CTATAATAACACATAAACAT+AGG | + | chr6.4:50416741-50416760 | None:intergenic | 20.0% |
| !! | GATGAAACAATAAATTTAGT+GGG | + | chr6.4:50418736-50418755 | None:intergenic | 20.0% |
| !! | TAACAAGAATTATGTTGATA+TGG | - | chr6.4:50416914-50416933 | MS.gene27393:CDS | 20.0% |
| !! | TGATGAAACAATAAATTTAG+TGG | + | chr6.4:50418737-50418756 | None:intergenic | 20.0% |
| !!! | AAATTCTTGATTTTACCTAA+AGG | + | chr6.4:50418395-50418414 | None:intergenic | 20.0% |
| !!! | AATATTTAGAAGTGTATGTT+TGG | - | chr6.4:50418161-50418180 | MS.gene27393:intron | 20.0% |
| !!! | AATTTTGATTCTACAATACT+AGG | + | chr6.4:50418858-50418877 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTAAGGAAGAAA+GGG | + | chr6.4:50416684-50416703 | None:intergenic | 20.0% |
| !!! | ATTATTAGATCTTTTCTGTT+TGG | - | chr6.4:50417685-50417704 | MS.gene27393:CDS | 20.0% |
| !!! | CTATGTTTATGTGTTATTAT+AGG | - | chr6.4:50416739-50416758 | MS.gene27393:CDS | 20.0% |
| !!! | GCGAAAATATCATTTTTTAA+TGG | - | chr6.4:50417629-50417648 | MS.gene27393:CDS | 20.0% |
| !!! | TAAGTATCAAATTTTGATTG+TGG | + | chr6.4:50417659-50417678 | None:intergenic | 20.0% |
| !!! | TTGATCAAGATTTTAAATTG+TGG | - | chr6.4:50416990-50417009 | MS.gene27393:CDS | 20.0% |
| ! | AATAAGACTAAGTACATGTT+TGG | - | chr6.4:50417058-50417077 | MS.gene27393:intron | 25.0% |
| ! | ACCTCATTACAAAAAAAACT+AGG | + | chr6.4:50416711-50416730 | None:intergenic | 25.0% |
| ! | ACTTCTTACTAAAAAGAACA+AGG | - | chr6.4:50419412-50419431 | MS.gene27393:intron | 25.0% |
| ! | ATACGACTAAAAAAGCAAAA+TGG | + | chr6.4:50420067-50420086 | None:intergenic | 25.0% |
| ! | CGTTTAACTATTATTACCTT+TGG | + | chr6.4:50419693-50419712 | None:intergenic | 25.0% |
| ! | TAAGGATAAAAAACTAGTCA+CGG | + | chr6.4:50419874-50419893 | None:intergenic | 25.0% |
| ! | TTAAACGACATTAAACATAG+AGG | + | chr6.4:50419194-50419213 | None:intergenic | 25.0% |
| ! | TTGTCAGTATATTTCTTGTT+AGG | + | chr6.4:50419844-50419863 | None:intergenic | 25.0% |
| !! | ACACAAAAGCTTAATTTTTC+TGG | + | chr6.4:50418360-50418379 | None:intergenic | 25.0% |
| !! | ATGAATGAGGGTATAATTTA+GGG | - | chr6.4:50417425-50417444 | MS.gene27393:intron | 25.0% |
| !! | GGATCAAATTTTAAACTAGA+AGG | - | chr6.4:50417347-50417366 | MS.gene27393:intron | 25.0% |
| !! | GTGTACATCTAAAATGATTT+CGG | + | chr6.4:50418335-50418354 | None:intergenic | 25.0% |
| !! | GTTTTTCACATCAATTATCT+TGG | - | chr6.4:50419635-50419654 | MS.gene27393:intron | 25.0% |
| !! | TATTTTCGCTTTCTTCAAAA+AGG | + | chr6.4:50417618-50417637 | None:intergenic | 25.0% |
| !! | TGTACATCTAAAATGATTTC+GGG | + | chr6.4:50418334-50418353 | None:intergenic | 25.0% |
| !!! | ACCTAGTTTTTTTTGTAATG+AGG | - | chr6.4:50416707-50416726 | MS.gene27393:CDS | 25.0% |
| !!! | ATGATAGTTTTAAGGAGTAA+AGG | + | chr6.4:50417580-50417599 | None:intergenic | 25.0% |
| !!! | ATTTTGCTTTTTTAGTCGTA+TGG | - | chr6.4:50420066-50420085 | MS.gene27393:intron | 25.0% |
| !!! | CTAATTTTTTAATCGGAAAC+CGG | + | chr6.4:50417460-50417479 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTTAAGGAAGAA+AGG | + | chr6.4:50416685-50416704 | None:intergenic | 25.0% |
| !!! | TAGATTTTGAAACAACCTAA+TGG | - | chr6.4:50417477-50417496 | MS.gene27393:intron | 25.0% |
| !!! | TGTTATTTTTCTTGCTCTAA+GGG | - | chr6.4:50420138-50420157 | MS.gene27393:intron | 25.0% |
| AATATACTACACAGGTTTGT+TGG | - | chr6.4:50419213-50419232 | MS.gene27393:CDS | 30.0% | |
| ACAATATGCAAAACCACATA+CGG | + | chr6.4:50418475-50418494 | None:intergenic | 30.0% | |
| ACACTTCTGATCAAAATTGT+CGG | - | chr6.4:50418612-50418631 | MS.gene27393:intron | 30.0% | |
| ACAGAATTCATAAGCTATCA+TGG | + | chr6.4:50419037-50419056 | None:intergenic | 30.0% | |
| ACTATGTTAGGCTTATCATA+TGG | + | chr6.4:50418040-50418059 | None:intergenic | 30.0% | |
| AGAAAAAGTTGTGAATCTCT+TGG | - | chr6.4:50420455-50420474 | MS.gene27393:intron | 30.0% | |
| ATAGCTCAAATTGATGAATG+AGG | - | chr6.4:50417412-50417431 | MS.gene27393:intron | 30.0% | |
| ATCCATCAATTTAGTCCTAA+TGG | - | chr6.4:50417388-50417407 | MS.gene27393:intron | 30.0% | |
| ATGTGAAAAACAAGATCATC+CGG | + | chr6.4:50419626-50419645 | None:intergenic | 30.0% | |
| CTAATGGTATAGCTCAAATT+GGG | - | chr6.4:50417404-50417423 | MS.gene27393:intron | 30.0% | |
| CTCAATACTACCAGTTTATA+CGG | - | chr6.4:50419938-50419957 | MS.gene27393:intron | 30.0% | |
| GAGAAATTCAATGTGAAAGT+TGG | + | chr6.4:50419671-50419690 | None:intergenic | 30.0% | |
| GTCGTTTAAATATACTACAC+AGG | - | chr6.4:50419205-50419224 | MS.gene27393:CDS | 30.0% | |
| TAAGAAACTACACATGACTT+TGG | + | chr6.4:50418441-50418460 | None:intergenic | 30.0% | |
| TAATGGTATAGCTCAAATTG+GGG | - | chr6.4:50417405-50417424 | MS.gene27393:intron | 30.0% | |
| TACCATTAGGACTAAATTGA+TGG | + | chr6.4:50417393-50417412 | None:intergenic | 30.0% | |
| TAGCTCAAATTGATGAATGA+GGG | - | chr6.4:50417413-50417432 | MS.gene27393:intron | 30.0% | |
| TCAATTTGAGCTATACCATT+AGG | + | chr6.4:50417406-50417425 | None:intergenic | 30.0% | |
| TGCTTTGTATTTCTTTCAAC+AGG | - | chr6.4:50419898-50419917 | MS.gene27393:intron | 30.0% | |
| TGTATGTTTGGATAAGTAGT+GGG | - | chr6.4:50418173-50418192 | MS.gene27393:intron | 30.0% | |
| TTCACATTGAATTTCTCCAA+AGG | - | chr6.4:50419674-50419693 | MS.gene27393:intron | 30.0% | |
| TTGTTATGAAATGCAATAGC+AGG | - | chr6.4:50418491-50418510 | MS.gene27393:intron | 30.0% | |
| TTTCTCTCTAATTCTAACGA+TGG | - | chr6.4:50417304-50417323 | MS.gene27393:intron | 30.0% | |
| TTTGTTCAATTACGCAGAAT+CGG | - | chr6.4:50417861-50417880 | MS.gene27393:CDS | 30.0% | |
| ! | AAATGTGATGGAAAATTGCT+TGG | - | chr6.4:50420167-50420186 | MS.gene27393:intron | 30.0% |
| ! | AAGGTTTAAAATTGTCTCCA+AGG | - | chr6.4:50420230-50420249 | MS.gene27393:intron | 30.0% |
| ! | ACATTGATACTTTTCACCAA+CGG | + | chr6.4:50419533-50419552 | None:intergenic | 30.0% |
| ! | ATATACTACACAGGTTTGTT+GGG | - | chr6.4:50419214-50419233 | MS.gene27393:CDS | 30.0% |
| ! | ATTAGATCTTTTCTGTTTGG+TGG | - | chr6.4:50417688-50417707 | MS.gene27393:CDS | 30.0% |
| ! | ATTTTGCAAAAGCTACATCA+GGG | + | chr6.4:50417119-50417138 | None:intergenic | 30.0% |
| ! | GATGAATGAGGGTATAATTT+AGG | - | chr6.4:50417424-50417443 | MS.gene27393:intron | 30.0% |
| ! | TAGAGGTATAATGATCTGTT+TGG | + | chr6.4:50419177-50419196 | None:intergenic | 30.0% |
| ! | TCTTTTGGTATAGAATTCTC+TGG | + | chr6.4:50416774-50416793 | None:intergenic | 30.0% |
| ! | TTCATTTGTTACTACTTGGA+TGG | - | chr6.4:50416857-50416876 | MS.gene27393:CDS | 30.0% |
| ! | TTTTGACAAAAGCTACACTT+TGG | + | chr6.4:50418239-50418258 | None:intergenic | 30.0% |
| !! | AATGATGAGTTGATGTTAGA+TGG | - | chr6.4:50416813-50416832 | MS.gene27393:CDS | 30.0% |
| !! | AGCAGAGAATGATAGTTTTA+AGG | + | chr6.4:50417588-50417607 | None:intergenic | 30.0% |
| !! | GTGAAAAGTATCAATGTTAG+CGG | - | chr6.4:50419536-50419555 | MS.gene27393:intron | 30.0% |
| !! | TCAGTACTTTCAAGTTTCAA+TGG | + | chr6.4:50417823-50417842 | None:intergenic | 30.0% |
| !! | TCTTTGGAATTGATAGAACT+TGG | + | chr6.4:50420489-50420508 | None:intergenic | 30.0% |
| !!! | CTAGGTGTGATGTTTTTTTA+AGG | + | chr6.4:50416693-50416712 | None:intergenic | 30.0% |
| !!! | CTGTTATTTTTCTTGCTCTA+AGG | - | chr6.4:50420137-50420156 | MS.gene27393:intron | 30.0% |
| !!! | GTTTAGCTTTTAAAAGGAAG+TGG | - | chr6.4:50417987-50418006 | MS.gene27393:intron | 30.0% |
| !!! | TAGCTGGTTTAGCTTTTAAA+AGG | - | chr6.4:50417981-50418000 | MS.gene27393:intron | 30.0% |
| AAAATTGTCTCCAAGGACAT+AGG | - | chr6.4:50420237-50420256 | MS.gene27393:intron | 35.0% | |
| AAAATTTGCCAGGTACTTTG+AGG | - | chr6.4:50419238-50419257 | MS.gene27393:CDS | 35.0% | |
| AAACAGTTTCACAAGTGTCT+AGG | + | chr6.4:50418971-50418990 | None:intergenic | 35.0% | |
| AAGAAAGGGAACACTTACTT+AGG | + | chr6.4:50416670-50416689 | None:intergenic | 35.0% | |
| AAGGAAGGAATTGAGAAAAC+AGG | - | chr6.4:50420207-50420226 | MS.gene27393:intron | 35.0% | |
| AAGGAATTGAGAAAACAGGA+AGG | - | chr6.4:50420211-50420230 | MS.gene27393:intron | 35.0% | |
| ACCATTTCAACAGCTTTCAA+TGG | + | chr6.4:50419311-50419330 | None:intergenic | 35.0% | |
| ACTAAAAAGAACAAGGAGAC+AGG | - | chr6.4:50419419-50419438 | MS.gene27393:intron | 35.0% | |
| AGACACTTGTGAAACTGTTT+GGG | - | chr6.4:50418971-50418990 | MS.gene27393:intron | 35.0% | |
| ATGATAAGCTTATCACACTC+AGG | + | chr6.4:50416885-50416904 | None:intergenic | 35.0% | |
| CAAATTTGTCTGTGCTTCAT+AGG | - | chr6.4:50418681-50418700 | MS.gene27393:intron | 35.0% | |
| CAGACCATTTGAGAAAATAC+GGG | - | chr6.4:50420319-50420338 | MS.gene27393:CDS | 35.0% | |
| CAGACTAAGAGAAAATCAGA+AGG | - | chr6.4:50418010-50418029 | MS.gene27393:intron | 35.0% | |
| CAGTGAGATTGACAAAATCA+CGG | + | chr6.4:50418274-50418293 | None:intergenic | 35.0% | |
| CATCTATTCAATGCTCCTAT+TGG | - | chr6.4:50417902-50417921 | MS.gene27393:CDS | 35.0% | |
| CCAATTTGAGCTATACCATT+AGG | + | chr6.4:50417495-50417514 | None:intergenic | 35.0% | |
| CCTAATGGTATAGCTCAAAT+TGG | - | chr6.4:50417403-50417422 | MS.gene27393:intron | 35.0% | |
| CTAATTCTAACGATGGTCTA+CGG | - | chr6.4:50417311-50417330 | MS.gene27393:intron | 35.0% | |
| GATAAGCCTAACATAGTTAC+TGG | - | chr6.4:50418043-50418062 | MS.gene27393:intron | 35.0% | |
| GCACAGACAAATTTGATCAA+AGG | + | chr6.4:50418676-50418695 | None:intergenic | 35.0% | |
| GCAGACCATTTGAGAAAATA+CGG | - | chr6.4:50420318-50420337 | MS.gene27393:CDS | 35.0% | |
| GTGTATGTTTGGATAAGTAG+TGG | - | chr6.4:50418172-50418191 | MS.gene27393:intron | 35.0% | |
| TAAGGGCTACAAAAATGTGA+TGG | - | chr6.4:50420155-50420174 | MS.gene27393:intron | 35.0% | |
| TAGACACTTGTGAAACTGTT+TGG | - | chr6.4:50418970-50418989 | MS.gene27393:intron | 35.0% | |
| TATAATTCTCCGCAATATCG+AGG | + | chr6.4:50417034-50417053 | None:intergenic | 35.0% | |
| TCAAGCACATACTTGAGATT+CGG | + | chr6.4:50419999-50420018 | None:intergenic | 35.0% | |
| TCCATTGAAAGCTGTTGAAA+TGG | - | chr6.4:50419307-50419326 | MS.gene27393:CDS | 35.0% | |
| TGAGTGTGATAAGCTTATCA+TGG | - | chr6.4:50416884-50416903 | MS.gene27393:CDS | 35.0% | |
| TGATGTTAGATGGAAAACCA+AGG | - | chr6.4:50416823-50416842 | MS.gene27393:CDS | 35.0% | |
| TGTTGTCTAATGTGTCCTTT+AGG | - | chr6.4:50418377-50418396 | MS.gene27393:intron | 35.0% | |
| TTAGCTCCAGTAACTATGTT+AGG | + | chr6.4:50418052-50418071 | None:intergenic | 35.0% | |
| TTAGTGGGATATGTATGTAG+TGG | + | chr6.4:50418721-50418740 | None:intergenic | 35.0% | |
| TTGATTCTACAATACTAGGC+TGG | + | chr6.4:50418854-50418873 | None:intergenic | 35.0% | |
| TTTGTTGGGAAAAATTTGCC+AGG | - | chr6.4:50419228-50419247 | MS.gene27393:CDS | 35.0% | |
| ! | AACACAAGAATTCTGAAGGA+AGG | - | chr6.4:50420192-50420211 | MS.gene27393:intron | 35.0% |
| ! | ATCTGATATGCTGCATCTTT+TGG | + | chr6.4:50416789-50416808 | None:intergenic | 35.0% |
| ! | GATGTAGCTTTTGCAAAATC+AGG | - | chr6.4:50417120-50417139 | MS.gene27393:intron | 35.0% |
| ! | GATTTTGCAAAAGCTACATC+AGG | + | chr6.4:50417120-50417139 | None:intergenic | 35.0% |
| ! | TAATTTAGGGACTAACTTGC+CGG | - | chr6.4:50417438-50417457 | MS.gene27393:intron | 35.0% |
| ! | TGGCTTCATTTGTTACTACT+TGG | - | chr6.4:50416853-50416872 | MS.gene27393:CDS | 35.0% |
| ! | TTGGTGGTTAGATGGAAATT+TGG | - | chr6.4:50417704-50417723 | MS.gene27393:CDS | 35.0% |
| !! | AAAGCTTTGTTCATTCTCAG+GGG | - | chr6.4:50418796-50418815 | MS.gene27393:intron | 35.0% |
| !! | AATGAACAAAGCTTTGAGAC+AGG | + | chr6.4:50418791-50418810 | None:intergenic | 35.0% |
| !! | ATGAACAAAGCTTTGAGACA+GGG | + | chr6.4:50418790-50418809 | None:intergenic | 35.0% |
| !! | ATTTTGATCAGAAGTGTGTG+TGG | + | chr6.4:50418609-50418628 | None:intergenic | 35.0% |
| !! | CAAAGCTTTGTTCATTCTCA+GGG | - | chr6.4:50418795-50418814 | MS.gene27393:intron | 35.0% |
| !! | TCAAAGCTTTGTTCATTCTC+AGG | - | chr6.4:50418794-50418813 | MS.gene27393:intron | 35.0% |
| !! | TTTATGGTGTTGCAGCTTTA+TGG | - | chr6.4:50417257-50417276 | MS.gene27393:CDS | 35.0% |
| !! | TTTTCTGTTTGGTGGTTAGA+TGG | - | chr6.4:50417696-50417715 | MS.gene27393:CDS | 35.0% |
| AAAAGAACAAGGAGACAGGA+TGG | - | chr6.4:50419423-50419442 | MS.gene27393:intron | 40.0% | |
| AAAATACGGGTGGATAGTTC+CGG | - | chr6.4:50420332-50420351 | MS.gene27393:CDS | 40.0% | |
| AAACAACCCAACCAATACCA+GGG | + | chr6.4:50419583-50419602 | None:intergenic | 40.0% | |
| AAAGAACAAGGAGACAGGAT+GGG | - | chr6.4:50419424-50419443 | MS.gene27393:intron | 40.0% | |
| AAAGGAAGTGAAACTCACAG+AGG | - | chr6.4:50419268-50419287 | MS.gene27393:CDS | 40.0% | |
| AAGCTATCATGGAGAGCTTA+TGG | + | chr6.4:50419026-50419045 | None:intergenic | 40.0% | |
| AATCTTCCCTAATCACCACT+CGG | + | chr6.4:50420398-50420417 | None:intergenic | 40.0% | |
| AATGAAGCCAAGTTAAGCCT+TGG | + | chr6.4:50416843-50416862 | None:intergenic | 40.0% | |
| AATGTTAGCGGTCACAAGTA+CGG | - | chr6.4:50419548-50419567 | MS.gene27393:intron | 40.0% | |
| ACAAAATCACGATACTGTCG+TGG | + | chr6.4:50418209-50418228 | None:intergenic | 40.0% | |
| ACCATTTGAGAAAATACGGG+TGG | - | chr6.4:50420322-50420341 | MS.gene27393:CDS | 40.0% | |
| AGAAGATCAGGGTAGAGAAA+TGG | + | chr6.4:50419494-50419513 | None:intergenic | 40.0% | |
| AGATAGGATCCTCGATATTG+CGG | - | chr6.4:50417022-50417041 | MS.gene27393:CDS | 40.0% | |
| ATTGTGGTTGTGATCGAGAT+AGG | - | chr6.4:50417006-50417025 | MS.gene27393:CDS | 40.0% | |
| ATTTCCTCCCAAAGCATGTT+TGG | + | chr6.4:50418302-50418321 | None:intergenic | 40.0% | |
| CAAATAAACCAGTCCAAGCA+GGG | + | chr6.4:50418933-50418952 | None:intergenic | 40.0% | |
| CACAGAGGATTACTATGTGA+TGG | - | chr6.4:50419283-50419302 | MS.gene27393:CDS | 40.0% | |
| GCTTTATGATTCACATTGCC+TGG | - | chr6.4:50418826-50418845 | MS.gene27393:intron | 40.0% | |
| GGAAATCCCATAGAAGATCA+GGG | + | chr6.4:50419505-50419524 | None:intergenic | 40.0% | |
| TAAACAAACCTGAAGCTCAG+TGG | + | chr6.4:50416955-50416974 | None:intergenic | 40.0% | |
| TACTACCAGTTTATACGGCT+AGG | - | chr6.4:50419943-50419962 | MS.gene27393:intron | 40.0% | |
| TAGAAAAGTTGCTCCGTATG+TGG | - | chr6.4:50418459-50418478 | MS.gene27393:intron | 40.0% | |
| TCAAATAAACCAGTCCAAGC+AGG | + | chr6.4:50418934-50418953 | None:intergenic | 40.0% | |
| TCTCTACCCTGATCTTCTAT+GGG | - | chr6.4:50419496-50419515 | MS.gene27393:intron | 40.0% | |
| TGCCAATCCAAACATGCTTT+GGG | - | chr6.4:50418292-50418311 | MS.gene27393:intron | 40.0% | |
| TGGAAAACCAAGGCTTAACT+TGG | - | chr6.4:50416833-50416852 | MS.gene27393:CDS | 40.0% | |
| TTCCAAAGATGCTCATGTTG+CGG | - | chr6.4:50420500-50420519 | MS.gene27393:intron | 40.0% | |
| TTCTCTACCCTGATCTTCTA+TGG | - | chr6.4:50419495-50419514 | MS.gene27393:intron | 40.0% | |
| ! | AATTTGATCAAAGGCGTGTG+CGG | + | chr6.4:50418667-50418686 | None:intergenic | 40.0% |
| ! | AGAAGCAAAAGTGCATGCTA+TGG | + | chr6.4:50416626-50416645 | None:intergenic | 40.0% |
| ! | GCGATTGATGTGTCGTATTT+TGG | - | chr6.4:50418891-50418910 | MS.gene27393:intron | 40.0% |
| ! | TACTTTTCACCAACGGCAAA+CGG | + | chr6.4:50419526-50419545 | None:intergenic | 40.0% |
| ! | TCCACCCGTATTTTCTCAAA+TGG | + | chr6.4:50420326-50420345 | None:intergenic | 40.0% |
| ! | TTTGGAAGCACACATTCGAA+CGG | + | chr6.4:50418423-50418442 | None:intergenic | 40.0% |
| !! | ATCTGTGTTGCAGCCATTTT+GGG | - | chr6.4:50419344-50419363 | MS.gene27393:intron | 40.0% |
| !! | ATGGTCTCGTTTTGTTCATC+TGG | + | chr6.4:50416607-50416626 | None:intergenic | 40.0% |
| !! | GTACTTTGAGGTTGAGCTAA+AGG | - | chr6.4:50419250-50419269 | MS.gene27393:CDS | 40.0% |
| !! | TACTGGAAGAAGCTTGTTGA+TGG | - | chr6.4:50420591-50420610 | MS.gene27393:CDS | 40.0% |
| !! | TGTTTACCCTGGTATTGGTT+GGG | - | chr6.4:50419574-50419593 | MS.gene27393:intron | 40.0% |
| !! | TTGTTTACCCTGGTATTGGT+TGG | - | chr6.4:50419573-50419592 | MS.gene27393:intron | 40.0% |
| AACATCGTCCATTTCGTGTC+CGG | + | chr6.4:50418581-50418600 | None:intergenic | 45.0% | |
| AACCGCAACATGAGCATCTT+TGG | + | chr6.4:50420505-50420524 | None:intergenic | 45.0% | |
| AGTTACTGGAGCTAATGTGC+AGG | - | chr6.4:50418057-50418076 | MS.gene27393:intron | 45.0% | |
| ATTCATGTAGATGCTGCGAG+TGG | - | chr6.4:50419455-50419474 | MS.gene27393:intron | 45.0% | |
| CAAAATGGCTGCAACACAGA+TGG | + | chr6.4:50419345-50419364 | None:intergenic | 45.0% | |
| CAAACAACCCAACCAATACC+AGG | + | chr6.4:50419584-50419603 | None:intergenic | 45.0% | |
| CAATAGCAGGTCTGAACCAA+AGG | - | chr6.4:50418504-50418523 | MS.gene27393:intron | 45.0% | |
| CAATGCTCCTATTGGTGAAG+AGG | - | chr6.4:50417910-50417929 | MS.gene27393:CDS | 45.0% | |
| CGGAAATCCCATAGAAGATC+AGG | + | chr6.4:50419506-50419525 | None:intergenic | 45.0% | |
| CTCCCAAAGCATGTTTGGAT+TGG | + | chr6.4:50418297-50418316 | None:intergenic | 45.0% | |
| CTCGCAGCATCTACATGAAT+CGG | + | chr6.4:50419455-50419474 | None:intergenic | 45.0% | |
| CTGCCAATCCAAACATGCTT+TGG | - | chr6.4:50418291-50418310 | MS.gene27393:intron | 45.0% | |
| CTTCACATCCTCAAACTCTC+CGG | + | chr6.4:50419381-50419400 | None:intergenic | 45.0% | |
| GCAGTTTCCTCTTCACCAAT+AGG | + | chr6.4:50417920-50417939 | None:intergenic | 45.0% | |
| GGCGAACACAAGAATTCTGA+AGG | - | chr6.4:50420188-50420207 | MS.gene27393:intron | 45.0% | |
| GGCTTATGAAGTATGGACAC+CGG | - | chr6.4:50418559-50418578 | MS.gene27393:intron | 45.0% | |
| GTCCATACTTCATAAGCCGA+AGG | + | chr6.4:50418557-50418576 | None:intergenic | 45.0% | |
| GTCTACGGCTGCAACTATAA+AGG | - | chr6.4:50417326-50417345 | MS.gene27393:intron | 45.0% | |
| TCAGAGGCAATAATGCTAGC+TGG | - | chr6.4:50417965-50417984 | MS.gene27393:CDS | 45.0% | |
| TTCAGAGAGAAGGCTACAAG+TGG | + | chr6.4:50420267-50420286 | None:intergenic | 45.0% | |
| TTCTAGATACGTGCGTGAAC+AGG | - | chr6.4:50416642-50416661 | MS.gene27393:CDS | 45.0% | |
| ! | CAATCCAAACATGCTTTGGG+AGG | - | chr6.4:50418295-50418314 | MS.gene27393:intron | 45.0% |
| ! | CATCTGTGTTGCAGCCATTT+TGG | - | chr6.4:50419343-50419362 | MS.gene27393:intron | 45.0% |
| ! | TAGCTCAACCTCAAAGTACC+TGG | + | chr6.4:50419249-50419268 | None:intergenic | 45.0% |
| !! | AAGTACGGTCTTGTTTACCC+TGG | - | chr6.4:50419563-50419582 | MS.gene27393:intron | 45.0% |
| !! | ATGTAGTGGATGAGTGTAGC+AGG | + | chr6.4:50418707-50418726 | None:intergenic | 45.0% |
| !! | CAGTAGGTGTTGGAACTGTA+GGG | - | chr6.4:50417939-50417958 | MS.gene27393:CDS | 45.0% |
| !! | CTGGTATTGGTTGGGTTGTT+TGG | - | chr6.4:50419582-50419601 | MS.gene27393:intron | 45.0% |
| !! | CTTGTTGATGGCAAGAGAGT+TGG | - | chr6.4:50420603-50420622 | MS.gene27393:CDS | 45.0% |
| !! | GGTCTTGTTTACCCTGGTAT+TGG | - | chr6.4:50419569-50419588 | MS.gene27393:intron | 45.0% |
| !! | GTATTGGTTGGGTTGTTTGG+AGG | - | chr6.4:50419585-50419604 | MS.gene27393:intron | 45.0% |
| !!! | ATTTTGGGTTCAACGCTGAC+CGG | - | chr6.4:50419359-50419378 | MS.gene27393:intron | 45.0% |
| !!! | TTAAATTATAAGTTATTTTA+TGG | - | chr6.4:50417241-50417260 | MS.gene27393:CDS | 5.0% |
| AAGCCGAAGGCCTAAAGCAA+GGG | + | chr6.4:50418544-50418563 | None:intergenic | 50.0% | |
| AAGTGGCACACCTATGTCCT+TGG | + | chr6.4:50420250-50420269 | None:intergenic | 50.0% | |
| ATGGGATTTCCGTTTGCCGT+TGG | - | chr6.4:50419514-50419533 | MS.gene27393:intron | 50.0% | |
| CAAGCAGGGCTTATGGGAAA+AGG | + | chr6.4:50418919-50418938 | None:intergenic | 50.0% | |
| CGAAGCCTAGCCGTATAAAC+TGG | + | chr6.4:50419951-50419970 | None:intergenic | 50.0% | |
| GAGGAAACTGCAGTAGGTGT+TGG | - | chr6.4:50417929-50417948 | MS.gene27393:CDS | 50.0% | |
| GCAGGTCTGAACCAAAGGTA+AGG | - | chr6.4:50418509-50418528 | MS.gene27393:intron | 50.0% | |
| GCTAGACAAGCCCTTGCTTT+AGG | - | chr6.4:50418531-50418550 | MS.gene27393:intron | 50.0% | |
| GCTGCTGTCTTTCAGAGAGA+AGG | + | chr6.4:50420277-50420296 | None:intergenic | 50.0% | |
| GGAAGATTTCAGCTGCAGCT+TGG | - | chr6.4:50420410-50420429 | MS.gene27393:CDS | 50.0% | |
| GGACACGAAATGGACGATGT+TGG | - | chr6.4:50418580-50418599 | MS.gene27393:intron | 50.0% | |
| GGCCTTCGGCTTATGAAGTA+TGG | - | chr6.4:50418552-50418571 | MS.gene27393:intron | 50.0% | |
| GGTGAAGAGGAAACTGCAGT+AGG | - | chr6.4:50417923-50417942 | MS.gene27393:CDS | 50.0% | |
| GTTTATACGGCTAGGCTTCG+AGG | - | chr6.4:50419951-50419970 | MS.gene27393:intron | 50.0% | |
| TAAGCCGAAGGCCTAAAGCA+AGG | + | chr6.4:50418545-50418564 | None:intergenic | 50.0% | |
| TATCGCGAGTGAGACAAGTG+AGG | - | chr6.4:50420524-50420543 | MS.gene27393:intron | 50.0% | |
| TATGGACACCGGACACGAAA+TGG | - | chr6.4:50418570-50418589 | MS.gene27393:intron | 50.0% | |
| TGGAACTGTAGGGTCATCAG+AGG | - | chr6.4:50417949-50417968 | MS.gene27393:CDS | 50.0% | |
| TGTCCTCCGAGTGGTGATTA+GGG | - | chr6.4:50420389-50420408 | MS.gene27393:CDS | 50.0% | |
| ! | AAGCCCTTGCTTTAGGCCTT+CGG | - | chr6.4:50418538-50418557 | MS.gene27393:intron | 50.0% |
| ! | CTTTTCCCATAAGCCCTGCT+TGG | - | chr6.4:50418917-50418936 | MS.gene27393:intron | 50.0% |
| ! | GGTCAGCGTTGAACCCAAAA+TGG | + | chr6.4:50419360-50419379 | None:intergenic | 50.0% |
| ! | TACAATACTAGGCTGGCTCC+AGG | + | chr6.4:50418847-50418866 | None:intergenic | 50.0% |
| !! | GAGGCATAAAGCTGACTTGC+CGG | - | chr6.4:50419604-50419623 | MS.gene27393:intron | 50.0% |
| !! | GCAGTAGGTGTTGGAACTGT+AGG | - | chr6.4:50417938-50417957 | MS.gene27393:CDS | 50.0% |
| !! | GGCTTGTCTAGCCTTACCTT+TGG | + | chr6.4:50418523-50418542 | None:intergenic | 50.0% |
| AACGCTGACCGGAGAGTTTG+AGG | - | chr6.4:50419370-50419389 | MS.gene27393:intron | 55.0% | |
| ACCAGTCCAAGCAGGGCTTA+TGG | + | chr6.4:50418926-50418945 | None:intergenic | 55.0% | |
| ACCTGAAGCTCAGTGGTGAC+AGG | + | chr6.4:50416948-50416967 | None:intergenic | 55.0% | |
| ATGTAGATGCTGCGAGTGGC+GGG | - | chr6.4:50419459-50419478 | MS.gene27393:intron | 55.0% | |
| CATGTAGATGCTGCGAGTGG+CGG | - | chr6.4:50419458-50419477 | MS.gene27393:intron | 55.0% | |
| CCAGTCCAAGCAGGGCTTAT+GGG | + | chr6.4:50418925-50418944 | None:intergenic | 55.0% | |
| CTGTCCTCCGAGTGGTGATT+AGG | - | chr6.4:50420388-50420407 | MS.gene27393:CDS | 55.0% | |
| CTTCCCTAATCACCACTCGG+AGG | + | chr6.4:50420395-50420414 | None:intergenic | 55.0% | |
| TCCTGTCACCACTGAGCTTC+AGG | - | chr6.4:50416944-50416963 | MS.gene27393:CDS | 55.0% | |
| ACACATCGCTGTCCTCCGAG+TGG | - | chr6.4:50420380-50420399 | MS.gene27393:CDS | 60.0% | |
| CCCATAAGCCCTGCTTGGAC+TGG | - | chr6.4:50418922-50418941 | MS.gene27393:intron | 60.0% | |
| TCCGCTGGCATTGTGTAGGC+CGG | + | chr6.4:50420354-50420373 | None:intergenic | 60.0% | |
| TCCGGCCTACACAATGCCAG+CGG | - | chr6.4:50420350-50420369 | MS.gene27393:CDS | 60.0% | |
| TGCGTCCGCTGGCATTGTGT+AGG | + | chr6.4:50420358-50420377 | None:intergenic | 60.0% | |
| ! | GCGATGTGTTTTGCGTCCGC+TGG | + | chr6.4:50420369-50420388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 50416577 | 50420635 | 50416577 | ID=MS.gene27393 |
| chr6.4 | mRNA | 50416577 | 50420635 | 50416577 | ID=MS.gene27393.t1;Parent=MS.gene27393 |
| chr6.4 | exon | 50420541 | 50420635 | 50420541 | ID=MS.gene27393.t1.exon1;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50420541 | 50420635 | 50420541 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| chr6.4 | exon | 50420247 | 50420451 | 50420247 | ID=MS.gene27393.t1.exon2;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50420247 | 50420451 | 50420247 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| chr6.4 | exon | 50419134 | 50419334 | 50419134 | ID=MS.gene27393.t1.exon3;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50419134 | 50419334 | 50419134 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| chr6.4 | exon | 50417517 | 50417985 | 50417517 | ID=MS.gene27393.t1.exon4;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50417517 | 50417985 | 50417517 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| chr6.4 | exon | 50417240 | 50417292 | 50417240 | ID=MS.gene27393.t1.exon5;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50417240 | 50417292 | 50417240 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| chr6.4 | exon | 50416577 | 50417053 | 50416577 | ID=MS.gene27393.t1.exon6;Parent=MS.gene27393.t1 |
| chr6.4 | CDS | 50416577 | 50417053 | 50416577 | ID=cds.MS.gene27393.t1;Parent=MS.gene27393.t1 |
| Gene Sequence |
| Protein sequence |
