Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98522.t1 | AES99764.2 | 75.1 | 177 | 9 | 1 | 1 | 177 | 1 | 142 | 1.50E-14 | 90.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98522.t1 | Q07202 | 84.1 | 176 | 7 | 1 | 1 | 176 | 1 | 155 | 3.0e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98522.t1 | G7K7D4 | 75.1 | 177 | 9 | 1 | 1 | 177 | 1 | 142 | 1.0e-14 | 90.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene98522 | 0.808907 | 2.46E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene98522 | 0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene98522 | 0.808549 | 2.93E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene98522 | 0.814762 | 1.31E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene98522 | 0.820299 | 7.38E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene98522 | 0.819305 | 1.25E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene98522 | 0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene98522 | 0.814634 | 1.39E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene98522 | 0.836779 | 7.66E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene98522 | 0.8279 | 1.21E-54 | -1.69E-46 |
| MS.gene051535 | MS.gene98522 | 0.811189 | 7.93E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene98522 | 0.83271 | 8.09E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene98522 | 0.81709 | 3.95E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene98522 | 0.817688 | 2.90E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene98522 | 0.831911 | 1.28E-55 | -1.69E-46 |
| MS.gene053073 | MS.gene98522 | 0.850434 | 1.70E-60 | -1.69E-46 |
| MS.gene05316 | MS.gene98522 | 0.80616 | 9.41E-50 | -1.69E-46 |
| MS.gene053494 | MS.gene98522 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene98522 | 0.828323 | 9.58E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene98522 | 0.834101 | 3.64E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene98522 | 0.823059 | 1.70E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene98522 | 0.815006 | 1.15E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene98522 | 0.807406 | 5.13E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene98522 | -0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene98522 | 0.82631 | 2.91E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene98522 | 0.833888 | 4.12E-56 | -1.69E-46 |
| MS.gene057396 | MS.gene98522 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene057690 | MS.gene98522 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene98522 | 0.806336 | 8.64E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene98522 | 0.819261 | 1.27E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene98522 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene058201 | MS.gene98522 | 0.800716 | 1.27E-48 | -1.69E-46 |
| MS.gene058239 | MS.gene98522 | 0.847581 | 1.06E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene98522 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene98522 | 0.831312 | 1.79E-55 | -1.69E-46 |
| MS.gene058749 | MS.gene98522 | 0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene98522 | 0.858689 | 6.94E-63 | -1.69E-46 |
| MS.gene05984 | MS.gene98522 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene98522 | 0.866666 | 2.41E-65 | -1.69E-46 |
| MS.gene059899 | MS.gene98522 | 0.844419 | 7.65E-59 | -1.69E-46 |
| MS.gene060407 | MS.gene98522 | 0.813729 | 2.21E-51 | -1.69E-46 |
| MS.gene060495 | MS.gene98522 | 0.819688 | 1.02E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene98522 | 0.854351 | 1.30E-61 | -1.69E-46 |
| MS.gene061112 | MS.gene98522 | 0.868039 | 8.78E-66 | -1.69E-46 |
| MS.gene061113 | MS.gene98522 | 0.822102 | 2.83E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene98522 | 0.839508 | 1.52E-57 | -1.69E-46 |
| MS.gene061265 | MS.gene98522 | 0.867915 | 9.62E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98522.t1 | MTR_5g084460 | 62.447 | 237 | 78 | 2 | 1 | 234 | 1 | 229 | 1.15e-21 | 89.7 |
| MS.gene98522.t1 | MTR_5g084570 | 80.000 | 50 | 9 | 1 | 1 | 49 | 1 | 50 | 2.69e-20 | 85.1 |
| MS.gene98522.t1 | MTR_5g084540 | 70.968 | 62 | 17 | 1 | 1 | 61 | 1 | 62 | 5.20e-18 | 78.6 |
| MS.gene98522.t1 | MTR_5g084470 | 86.747 | 83 | 10 | 1 | 152 | 234 | 117 | 198 | 1.02e-15 | 73.2 |
| MS.gene98522.t1 | MTR_5g084470 | 90.909 | 55 | 5 | 0 | 1 | 55 | 1 | 55 | 2.07e-14 | 69.7 |
| MS.gene98522.t1 | MTR_5g084470 | 86.747 | 83 | 10 | 1 | 152 | 234 | 128 | 209 | 1.25e-15 | 73.2 |
| MS.gene98522.t1 | MTR_5g084530 | 92.727 | 55 | 4 | 0 | 1 | 55 | 1 | 55 | 1.38e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCCACCGATGCTAAAA+AGG | 0.195603 | 5.2:-72172816 | MS.gene98522:CDS |
| GTAACTACCGCCACCATATT+TGG | 0.234421 | 5.2:+72171960 | None:intergenic |
| ATGGTTGTAGCCTCCATATT+TGG | 0.284242 | 5.2:+72172326 | None:intergenic |
| TTGAACAATGGGTTCGAAAA+AGG | 0.298712 | 5.2:-72172909 | None:intergenic |
| GAAGTAAATGACGCCAAATA+TGG | 0.350579 | 5.2:-72171973 | MS.gene98522:CDS |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.2:-72172339 | MS.gene98522:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.410599 | 5.2:-72172135 | MS.gene98522:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.410599 | 5.2:-72172174 | MS.gene98522:CDS |
| TACAATGGCGGCGGAGGTCA+TGG | 0.420704 | 5.2:-72172090 | MS.gene98522:CDS |
| GGTGGAGGTCACGGTGGCCA+CGG | 0.439295 | 5.2:-72172039 | MS.gene98522:CDS |
| GGTCATGGTGGTCACGGTGG+AGG | 0.441065 | 5.2:-72172075 | MS.gene98522:CDS |
| CACGGTGGACACGGTGGACA+TGG | 0.456773 | 5.2:-72171838 | MS.gene98522:CDS |
| CATGCTAACCCTCTTGGCTA+TGG | 0.456984 | 5.2:-72172879 | MS.gene98522:CDS |
| GGTGGTTACAATGGCGGCGG+AGG | 0.462561 | 5.2:-72172096 | MS.gene98522:CDS |
| CATGGTGGTCACGGTGGAGG+TGG | 0.467561 | 5.2:-72172072 | MS.gene98522:CDS |
| CACGGTGGACATGGTGGTCA+CGG | 0.480185 | 5.2:-72171829 | MS.gene98522:CDS |
| AATCCTCATGCTAACCCTCT+TGG | 0.485821 | 5.2:-72172885 | MS.gene98522:CDS |
| GGCGGAGGTCATGGTGGTCA+CGG | 0.498903 | 5.2:-72172081 | MS.gene98522:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.2:-72172054 | MS.gene98522:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.2:-72172048 | MS.gene98522:CDS |
| CATGGTGGTCACGGTGGTCA+CGG | 0.511914 | 5.2:-72171820 | MS.gene98522:CDS |
| AAATATGGAGGCTACAACCA+TGG | 0.526109 | 5.2:-72172324 | MS.gene98522:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.531004 | 5.2:-72172216 | MS.gene98522:CDS |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5.2:-72171847 | MS.gene98522:CDS |
| TGACATCAGTGATGTCCGCT+AGG | 0.538067 | 5.2:-72172850 | MS.gene98522:CDS |
| AGTTATCACCACGGTGGAGG+TGG | 0.545081 | 5.2:-72171883 | MS.gene98522:CDS |
| GGAGGTTACAACCATGGTGG+AGG | 0.550860 | 5.2:-72172252 | MS.gene98522:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.2:-72172114 | MS.gene98522:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.2:-72172249 | MS.gene98522:CDS |
| GGTGGTTACCACAACGGTGG+TGG | 0.551258 | 5.2:-72172156 | MS.gene98522:CDS |
| GGTGGTTACCACAACGGTGG+TGG | 0.551258 | 5.2:-72172195 | MS.gene98522:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.554746 | 5.2:-72172213 | MS.gene98522:CDS |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5.2:-72172117 | MS.gene98522:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.2:-72172057 | MS.gene98522:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.560417 | 5.2:-72171862 | MS.gene98522:CDS |
| GGAGGTGGTTACAACGGTGG+TGG | 0.562839 | 5.2:-72172234 | MS.gene98522:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.2:-72172063 | MS.gene98522:CDS |
| GGTAGTTATCACCACGGTGG+AGG | 0.564481 | 5.2:-72171886 | MS.gene98522:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5.2:-72171865 | MS.gene98522:CDS |
| CATAAGAGCCATAGCCAAGA+GGG | 0.570574 | 5.2:+72172871 | None:intergenic |
| GGTTACCACAACGGTGGTGG+TGG | 0.571583 | 5.2:-72172153 | MS.gene98522:CDS |
| GGTTACCACAACGGTGGTGG+TGG | 0.571583 | 5.2:-72172192 | MS.gene98522:CDS |
| GGAGGTGGTTACAATGGCGG+CGG | 0.576902 | 5.2:-72172099 | MS.gene98522:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.2:-72172144 | MS.gene98522:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.2:-72172183 | MS.gene98522:CDS |
| GGAGGTCACGGTGGCCACGG+TGG | 0.578747 | 5.2:-72172036 | MS.gene98522:CDS |
| AACCACGGTGGAGGTGGTCA+CGG | 0.578947 | 5.2:-72171856 | MS.gene98522:CDS |
| GGTGGTTATAACCACGGTGG+TGG | 0.581184 | 5.2:-72172303 | MS.gene98522:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.584298 | 5.2:-72172105 | MS.gene98522:CDS |
| GGAAGTTACAACCATGGTGG+AGG | 0.585493 | 5.2:-72171928 | MS.gene98522:CDS |
| GGAGGTTATAACCACGGTGG+AGG | 0.590681 | 5.2:-72172270 | MS.gene98522:CDS |
| GACATCAGTGATGTCCGCTA+GGG | 0.597507 | 5.2:-72172849 | MS.gene98522:CDS |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.2:-72172294 | MS.gene98522:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.2:-72172291 | MS.gene98522:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.2:-72172138 | MS.gene98522:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.2:-72172177 | MS.gene98522:CDS |
| GGTAGTTACAACCACGGAGG+AGG | 0.611011 | 5.2:-72171907 | MS.gene98522:CDS |
| TGTAACCACCACCACCGTTG+TGG | 0.615245 | 5.2:+72172148 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.615245 | 5.2:+72172187 | None:intergenic |
| AACGGTGGTGGTTACAACCA+CGG | 0.623888 | 5.2:-72172222 | MS.gene98522:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.2:-72172288 | MS.gene98522:CDS |
| GTAAATGATGCCAAATATGG+AGG | 0.627438 | 5.2:-72172336 | MS.gene98522:CDS |
| ATCTGTTGCCGTGCAAACTG+AGG | 0.633170 | 5.2:-72172007 | MS.gene98522:CDS |
| CATGGTTGTAACTTCCACCA+TGG | 0.634292 | 5.2:+72171935 | None:intergenic |
| GTAAATGACGCCAAATATGG+TGG | 0.635940 | 5.2:-72171970 | MS.gene98522:CDS |
| CGTTGTAACCACCTCCACCA+TGG | 0.637472 | 5.2:+72172241 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+CGG | 0.640206 | 5.2:-72172102 | MS.gene98522:CDS |
| AACCATGGTGGTTATAACCA+CGG | 0.645055 | 5.2:-72172309 | MS.gene98522:CDS |
| CATGGTGGAGGTGGTTACAA+CGG | 0.645837 | 5.2:-72172240 | MS.gene98522:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.646982 | 5.2:+72172106 | None:intergenic |
| CACGGTGGAGGTTACAACCA+TGG | 0.648231 | 5.2:-72172258 | MS.gene98522:CDS |
| AATGACGCCAAATATGGTGG+CGG | 0.649996 | 5.2:-72171967 | MS.gene98522:CDS |
| AATGGCGGCGGAGGTCATGG+TGG | 0.657544 | 5.2:-72172087 | MS.gene98522:CDS |
| CACGGTGGAGGTGGTCACGG+TGG | 0.660681 | 5.2:-72171853 | MS.gene98522:CDS |
| TAGCCAAGAGGGTTAGCATG+AGG | 0.661289 | 5.2:+72172882 | None:intergenic |
| CACCGTGGTTATAACCACCA+TGG | 0.663353 | 5.2:+72172307 | None:intergenic |
| GGTGGTCACGGTGGACACGG+TGG | 0.663754 | 5.2:-72171844 | MS.gene98522:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.2:-72172141 | MS.gene98522:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.2:-72172180 | MS.gene98522:CDS |
| GGTGGAGGTGGTTACCACAA+CGG | 0.671710 | 5.2:-72172201 | MS.gene98522:CDS |
| GGTGGACACGGTGGACATGG+TGG | 0.672066 | 5.2:-72171835 | MS.gene98522:CDS |
| GGAGGTCATGGTGGTCACGG+TGG | 0.672950 | 5.2:-72172078 | MS.gene98522:CDS |
| GGTGGAGGTGGTTACCACAA+CGG | 0.678715 | 5.2:-72172162 | MS.gene98522:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5.2:-72172123 | MS.gene98522:CDS |
| GGTTGTAACTACCTCCACCA+TGG | 0.680661 | 5.2:+72171917 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.2:-72172060 | MS.gene98522:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5.2:-72171871 | MS.gene98522:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5.2:+72171854 | None:intergenic |
| GGTGGACATGGTGGTCACGG+TGG | 0.692213 | 5.2:-72171826 | MS.gene98522:CDS |
| TCACGGTGCCGACCAAACTG+AGG | 0.694971 | 5.2:-72171803 | MS.gene98522:CDS |
| TCATAAGAGCCATAGCCAAG+AGG | 0.695764 | 5.2:+72172870 | None:intergenic |
| GGCGGTAGTTACAACCATGG+TGG | 0.698593 | 5.2:-72171949 | MS.gene98522:CDS |
| GGTGATAACTACCTCCTCCG+TGG | 0.701736 | 5.2:+72171896 | None:intergenic |
| GGTGGAGGTGGTTACAACGG+TGG | 0.713237 | 5.2:-72172237 | MS.gene98522:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.714543 | 5.2:-72172045 | MS.gene98522:CDS |
| CATGGTGGAAGTTACAACCA+TGG | 0.715779 | 5.2:-72171934 | MS.gene98522:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.2:-72172276 | MS.gene98522:CDS |
| GGTGGCGGTAGTTACAACCA+TGG | 0.716531 | 5.2:-72171952 | MS.gene98522:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5.2:+72171875 | None:intergenic |
| TGTGGTAACCACCTCCACCG+TGG | 0.717584 | 5.2:+72172205 | None:intergenic |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.2:+72172835 | None:intergenic |
| GGTGGAAGTTACAACCATGG+TGG | 0.723567 | 5.2:-72171931 | MS.gene98522:CDS |
| GGAGGTGGTTACCACAACGG+TGG | 0.726472 | 5.2:-72172198 | MS.gene98522:CDS |
| GGTGGAGGTAGTTACAACCA+CGG | 0.730738 | 5.2:-72171913 | MS.gene98522:CDS |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.2:+72172292 | None:intergenic |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5.2:-72172120 | MS.gene98522:CDS |
| GGTGGAGGTTACAACCATGG+TGG | 0.744001 | 5.2:-72172255 | MS.gene98522:CDS |
| TATGGAGGCTACAACCATGG+TGG | 0.747738 | 5.2:-72172321 | MS.gene98522:CDS |
| GGAGGTGGTTACCACAACGG+TGG | 0.751214 | 5.2:-72172159 | MS.gene98522:CDS |
| CAACAGATTCAGCACCACCG+TGG | 0.757337 | 5.2:+72172022 | None:intergenic |
| GGAGGTAGTTATCACCACGG+TGG | 0.769330 | 5.2:-72171889 | MS.gene98522:CDS |
| GGAGGAGGTAGTTATCACCA+CGG | 0.770033 | 5.2:-72171892 | MS.gene98522:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.774475 | 5.2:-72172273 | MS.gene98522:CDS |
| CATGGTTGTAACCTCCACCG+TGG | 0.775135 | 5.2:+72172259 | None:intergenic |
| CATGGTGGTTATAACCACGG+TGG | 0.779726 | 5.2:-72172306 | MS.gene98522:CDS |
| GGTGGTGGTTACAACCACGG+TGG | 0.791258 | 5.2:-72172219 | MS.gene98522:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5.2:-72171868 | MS.gene98522:CDS |
| GGAGGTAGTTACAACCACGG+AGG | 0.812225 | 5.2:-72171910 | MS.gene98522:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTATATAACATTG+AGG | + | chr5.2:72172041-72172060 | None:intergenic | 15.0% |
| !! | ATATAATCCTTCAAAAAAGT+AGG | + | chr5.2:72171968-72171987 | None:intergenic | 20.0% |
| !!! | ATTATTTCCTACTTTTTTGA+AGG | - | chr5.2:72171958-72171977 | MS.gene98522:CDS | 20.0% |
| !!! | ATTTTTTCCAAACATTACAT+AGG | - | chr5.2:72172169-72172188 | MS.gene98522:CDS | 20.0% |
| ! | AATCATACCTATGTAATGTT+TGG | + | chr5.2:72172179-72172198 | None:intergenic | 25.0% |
| ! | CATATATATTGTGTTTGTAG+AGG | - | chr5.2:72172309-72172328 | MS.gene98522:CDS | 25.0% |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.2:72172349-72172368 | MS.gene98522:CDS | 30.0% | |
| TTCAATAAGAAGTTGTTGAG+TGG | - | chr5.2:72172140-72172159 | MS.gene98522:CDS | 30.0% | |
| ATATATAGGGTCATGCTAAC+CGG | + | chr5.2:72172254-72172273 | None:intergenic | 35.0% | |
| GAAGTAAATGACGCCAAATA+TGG | - | chr5.2:72172715-72172734 | MS.gene98522:intron | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.2:72172352-72172371 | MS.gene98522:CDS | 35.0% | |
| !! | TTTGAGTTTTGTCCTCAGTT+TGG | + | chr5.2:72172900-72172919 | None:intergenic | 35.0% |
| AAATATGGAGGCTACAACCA+TGG | - | chr5.2:72172364-72172383 | MS.gene98522:intron | 40.0% | |
| AACCATGGTGGTTATAACCA+CGG | - | chr5.2:72172379-72172398 | MS.gene98522:intron | 40.0% | |
| AACTTCCACCGATGCTAAAA+AGG | - | chr5.2:72171872-72171891 | MS.gene98522:CDS | 40.0% | |
| ACTTCCACCGATGCTAAAAA+GGG | - | chr5.2:72171873-72171892 | MS.gene98522:CDS | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.2:72171856-72171875 | None:intergenic | 40.0% | |
| ATGGTTGTAGCCTCCATATT+TGG | + | chr5.2:72172365-72172384 | None:intergenic | 40.0% | |
| GTAAATGACGCCAAATATGG+TGG | - | chr5.2:72172718-72172737 | MS.gene98522:intron | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.2:72172412-72172431 | MS.gene98522:intron | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.2:72172692-72172711 | None:intergenic | 40.0% |
| !! | AGTTTTGTCCTCAGTTTGGT+CGG | + | chr5.2:72172896-72172915 | None:intergenic | 40.0% |
| !! | TAGCTCACCCTTTTTAGCAT+CGG | + | chr5.2:72171883-72171902 | None:intergenic | 40.0% |
| AATCCTCATGCTAACCCTCT+TGG | - | chr5.2:72171803-72171822 | MS.gene98522:CDS | 45.0% | |
| AATGACGCCAAATATGGTGG+CGG | - | chr5.2:72172721-72172740 | MS.gene98522:intron | 45.0% | |
| CATAAGAGCCATAGCCAAGA+GGG | + | chr5.2:72171820-72171839 | None:intergenic | 45.0% | |
| CATGGTTGTAACTTCCACCA+TGG | + | chr5.2:72172756-72172775 | None:intergenic | 45.0% | |
| GTAACTACCGCCACCATATT+TGG | + | chr5.2:72172731-72172750 | None:intergenic | 45.0% | |
| TCATAAGAGCCATAGCCAAG+AGG | + | chr5.2:72171821-72171840 | None:intergenic | 45.0% | |
| ! | AATCAGTGTCCTAAGAGCAC+CGG | - | chr5.2:72172232-72172251 | MS.gene98522:CDS | 45.0% |
| ! | CATGGTGGAAGTTACAACCA+TGG | - | chr5.2:72172754-72172773 | MS.gene98522:intron | 45.0% |
| !! | ATATAGATATATATTTAAAA+AGG | - | chr5.2:72172270-72172289 | MS.gene98522:CDS | 5.0% |
| !! | TAAATATATATCTATATATA+GGG | + | chr5.2:72172267-72172286 | None:intergenic | 5.0% |
| !! | TTAAATATATATCTATATAT+AGG | + | chr5.2:72172268-72172287 | None:intergenic | 5.0% |
| ATCTGTTGCCGTGCAAACTG+AGG | - | chr5.2:72172681-72172700 | MS.gene98522:intron | 50.0% | |
| CACCGTGGTTATAACCACCA+TGG | + | chr5.2:72172384-72172403 | None:intergenic | 50.0% | |
| CATGCTAACCCTCTTGGCTA+TGG | - | chr5.2:72171809-72171828 | MS.gene98522:CDS | 50.0% | |
| CATGGTGGTTATAACCACGG+TGG | - | chr5.2:72172382-72172401 | MS.gene98522:intron | 50.0% | |
| CATTGTAACCACCTCCACCA+TGG | + | chr5.2:72172585-72172604 | None:intergenic | 50.0% | |
| GACATCAGTGATGTCCGCTA+GGG | - | chr5.2:72171839-72171858 | MS.gene98522:CDS | 50.0% | |
| GGAAGTTACAACCATGGTGG+AGG | - | chr5.2:72172760-72172779 | MS.gene98522:intron | 50.0% | |
| GGAGGAGGTAGTTATCACCA+CGG | - | chr5.2:72172796-72172815 | MS.gene98522:intron | 50.0% | |
| GGTGGAAGTTACAACCATGG+TGG | - | chr5.2:72172757-72172776 | MS.gene98522:intron | 50.0% | |
| GGTGGAGGTAGTTACAACCA+CGG | - | chr5.2:72172775-72172794 | MS.gene98522:intron | 50.0% | |
| GGTTGTAACTACCTCCACCA+TGG | + | chr5.2:72172774-72172793 | None:intergenic | 50.0% | |
| TATGGAGGCTACAACCATGG+TGG | - | chr5.2:72172367-72172386 | MS.gene98522:intron | 50.0% | |
| TCATGCTAACCGGTGCTCTT+AGG | + | chr5.2:72172244-72172263 | None:intergenic | 50.0% | |
| TGACATCAGTGATGTCCGCT+AGG | - | chr5.2:72171838-72171857 | MS.gene98522:CDS | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.2:72172394-72172413 | MS.gene98522:intron | 50.0% |
| ! | AACGGTGGTGGTTACAACCA+CGG | - | chr5.2:72172466-72172485 | MS.gene98522:intron | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+CGG | - | chr5.2:72172448-72172467 | MS.gene98522:intron | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5.2:72172448-72172467 | MS.gene98522:intron | 50.0% |
| ! | TAGCCAAGAGGGTTAGCATG+AGG | + | chr5.2:72171809-72171828 | None:intergenic | 50.0% |
| !! | AACGGTGGTGGTGGTTACAA+TGG | - | chr5.2:72172505-72172524 | MS.gene98522:intron | 50.0% |
| !! | CTCACCCTTTTTAGCATCGG+TGG | + | chr5.2:72171880-72171899 | None:intergenic | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.2:72172640-72172659 | MS.gene98522:intron | 50.0% |
| AGTTATCACCACGGTGGAGG+TGG | - | chr5.2:72172805-72172824 | MS.gene98522:intron | 55.0% | |
| CAACAGATTCAGCACCACCG+TGG | + | chr5.2:72172669-72172688 | None:intergenic | 55.0% | |
| CACCATTGTAACCACCACCG+TGG | + | chr5.2:72172399-72172418 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.2:72172625-72172644 | MS.gene98522:intron | 55.0% | |
| CACGGTGGAGGTTACAACCA+TGG | - | chr5.2:72172430-72172449 | MS.gene98522:intron | 55.0% | |
| CATGGTTGTAACCTCCACCG+TGG | + | chr5.2:72172432-72172451 | None:intergenic | 55.0% | |
| CGTTGTAACCACCTCCACCA+TGG | + | chr5.2:72172450-72172469 | None:intergenic | 55.0% | |
| GGAGGTAGTTACAACCACGG+AGG | - | chr5.2:72172778-72172797 | MS.gene98522:intron | 55.0% | |
| GGAGGTAGTTATCACCACGG+TGG | - | chr5.2:72172799-72172818 | MS.gene98522:intron | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | - | chr5.2:72172568-72172587 | MS.gene98522:intron | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.2:72172631-72172650 | MS.gene98522:intron | 55.0% | |
| GGAGGTTACAACCATGGTGG+AGG | - | chr5.2:72172436-72172455 | MS.gene98522:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+AGG | - | chr5.2:72172418-72172437 | MS.gene98522:intron | 55.0% | |
| GGCGGTAGTTACAACCATGG+TGG | - | chr5.2:72172739-72172758 | MS.gene98522:intron | 55.0% | |
| GGTAGTTACAACCACGGAGG+AGG | - | chr5.2:72172781-72172800 | MS.gene98522:intron | 55.0% | |
| GGTAGTTATCACCACGGTGG+AGG | - | chr5.2:72172802-72172821 | MS.gene98522:intron | 55.0% | |
| GGTGATAACTACCTCCTCCG+TGG | + | chr5.2:72172795-72172814 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5.2:72172565-72172584 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | - | chr5.2:72172565-72172584 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+CGG | - | chr5.2:72172586-72172605 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.2:72172586-72172605 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTGGTTACCACAA+CGG | - | chr5.2:72172487-72172506 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTTACAACCATGG+TGG | - | chr5.2:72172433-72172452 | MS.gene98522:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.2:72172415-72172434 | MS.gene98522:intron | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5.2:72172571-72172590 | MS.gene98522:intron | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.2:72172385-72172404 | MS.gene98522:intron | 55.0% | |
| TGTAACCACCACCACCGTTG+TGG | + | chr5.2:72172504-72172523 | None:intergenic | 55.0% | |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.2:72172397-72172416 | MS.gene98522:intron | 55.0% |
| ! | GGTGGCGGTAGTTACAACCA+TGG | - | chr5.2:72172736-72172755 | MS.gene98522:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.2:72172400-72172419 | MS.gene98522:intron | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.2:72172403-72172422 | MS.gene98522:intron | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.2:72172439-72172458 | MS.gene98522:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.2:72172508-72172527 | MS.gene98522:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.2:72172634-72172653 | MS.gene98522:intron | 55.0% |
| AACCACGGTGGAGGTGGTCA+CGG | - | chr5.2:72172832-72172851 | MS.gene98522:CDS | 60.0% | |
| CACGGTGGACATGGTGGTCA+CGG | - | chr5.2:72172859-72172878 | MS.gene98522:CDS | 60.0% | |
| CATGGTGGTCACGGTGGTCA+CGG | - | chr5.2:72172868-72172887 | MS.gene98522:CDS | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5.2:72172820-72172839 | MS.gene98522:CDS | 60.0% | |
| GGAGGTGGTTACAACGGTGG+TGG | - | chr5.2:72172454-72172473 | MS.gene98522:intron | 60.0% | |
| GGAGGTGGTTACAATGGCGG+CGG | - | chr5.2:72172589-72172608 | MS.gene98522:intron | 60.0% | |
| GGAGGTGGTTACCACAACGG+TGG | - | chr5.2:72172490-72172509 | MS.gene98522:intron | 60.0% | |
| GGTGGAGGTGGTTACAACGG+TGG | - | chr5.2:72172451-72172470 | MS.gene98522:intron | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.2:72172472-72172491 | MS.gene98522:intron | 60.0% | |
| GGTGGTTACCACAACGGTGG+TGG | - | chr5.2:72172493-72172512 | MS.gene98522:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.2:72172475-72172494 | MS.gene98522:intron | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5.2:72172816-72172835 | None:intergenic | 60.0% | |
| TACAATGGCGGCGGAGGTCA+TGG | - | chr5.2:72172598-72172617 | MS.gene98522:intron | 60.0% | |
| TGTGGTAACCACCTCCACCG+TGG | + | chr5.2:72172486-72172505 | None:intergenic | 60.0% | |
| ! | GGTGGTGGTTACAACCACGG+TGG | - | chr5.2:72172469-72172488 | MS.gene98522:intron | 60.0% |
| ! | GGTTACCACAACGGTGGTGG+TGG | - | chr5.2:72172496-72172515 | MS.gene98522:intron | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.2:72172643-72172662 | MS.gene98522:intron | 60.0% |
| !! | TCACGGTGCCGACCAAACTG+AGG | - | chr5.2:72172885-72172904 | MS.gene98522:CDS | 60.0% |
| AATGGCGGCGGAGGTCATGG+TGG | - | chr5.2:72172601-72172620 | MS.gene98522:intron | 65.0% | |
| CACGGTGGACACGGTGGACA+TGG | - | chr5.2:72172850-72172869 | MS.gene98522:CDS | 65.0% | |
| CATGGTGGTCACGGTGGAGG+TGG | - | chr5.2:72172616-72172635 | MS.gene98522:intron | 65.0% | |
| GGAGGTCATGGTGGTCACGG+TGG | - | chr5.2:72172610-72172629 | MS.gene98522:intron | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | - | chr5.2:72172841-72172860 | MS.gene98522:CDS | 65.0% | |
| GGCGGAGGTCATGGTGGTCA+CGG | - | chr5.2:72172607-72172626 | MS.gene98522:intron | 65.0% | |
| GGTCATGGTGGTCACGGTGG+AGG | - | chr5.2:72172613-72172632 | MS.gene98522:intron | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | - | chr5.2:72172853-72172872 | MS.gene98522:CDS | 65.0% | |
| GGTGGACATGGTGGTCACGG+TGG | - | chr5.2:72172862-72172881 | MS.gene98522:CDS | 65.0% | |
| GGTGGTTACAATGGCGGCGG+AGG | - | chr5.2:72172592-72172611 | MS.gene98522:intron | 65.0% | |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.2:72172837-72172856 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.2:72172835-72172854 | MS.gene98522:CDS | 70.0% | |
| GGTGGAGGTCACGGTGGCCA+CGG | - | chr5.2:72172649-72172668 | MS.gene98522:intron | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | - | chr5.2:72172844-72172863 | MS.gene98522:CDS | 70.0% | |
| GGAGGTCACGGTGGCCACGG+TGG | - | chr5.2:72172652-72172671 | MS.gene98522:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72171786 | 72172924 | 72171786 | ID=MS.gene98522 |
| chr5.2 | mRNA | 72171786 | 72172924 | 72171786 | ID=MS.gene98522.t1;Parent=MS.gene98522 |
| chr5.2 | exon | 72172816 | 72172924 | 72172816 | ID=MS.gene98522.t1.exon1;Parent=MS.gene98522.t1 |
| chr5.2 | CDS | 72172816 | 72172924 | 72172816 | ID=cds.MS.gene98522.t1;Parent=MS.gene98522.t1 |
| chr5.2 | exon | 72171786 | 72172381 | 72171786 | ID=MS.gene98522.t1.exon2;Parent=MS.gene98522.t1 |
| chr5.2 | CDS | 72171786 | 72172381 | 72171786 | ID=cds.MS.gene98522.t1;Parent=MS.gene98522.t1 |
| Gene Sequence |
| Protein sequence |
