Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073446.t1 | XP_003594859.2 | 95.9 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073446.t1 | Q1LZH1 | 30.7 | 300 | 172 | 9 | 19 | 306 | 57 | 332 | 1.6e-33 | 144.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073446.t1 | G7INC7 | 95.9 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene073446 | 0.846204 | 2.52E-59 | -1.69E-46 |
| MS.gene049150 | MS.gene073446 | 0.832462 | 9.33E-56 | -1.69E-46 |
| MS.gene049151 | MS.gene073446 | 0.81735 | 3.45E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene073446 | 0.842424 | 2.61E-58 | -1.69E-46 |
| MS.gene049230 | MS.gene073446 | 0.800113 | 1.68E-48 | -1.69E-46 |
| MS.gene049297 | MS.gene073446 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene073446 | 0.803947 | 2.73E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene073446 | 0.838522 | 2.74E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene073446 | 0.828139 | 1.06E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene073446 | 0.822116 | 2.81E-53 | -1.69E-46 |
| MS.gene049993 | MS.gene073446 | 0.849207 | 3.75E-60 | -1.69E-46 |
| MS.gene050060 | MS.gene073446 | 0.824142 | 9.47E-54 | -1.69E-46 |
| MS.gene050168 | MS.gene073446 | 0.804804 | 1.81E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene073446 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene073446 | 0.845065 | 5.12E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene073446 | 0.839412 | 1.61E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene073446 | 0.815015 | 1.15E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene073446 | -0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene073446 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene073446 | 0.830245 | 3.27E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene073446 | -0.849782 | 2.59E-60 | -1.69E-46 |
| MS.gene050464 | MS.gene073446 | 0.825152 | 5.48E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene073446 | 0.815688 | 8.13E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene073446 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene073446 | -0.835303 | 1.82E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene073446 | 0.900145 | 9.82E-78 | -1.69E-46 |
| MS.gene050971 | MS.gene073446 | 0.803603 | 3.22E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene073446 | 0.829052 | 6.39E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene073446 | 0.864867 | 8.93E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene073446 | 0.903354 | 3.78E-79 | -1.69E-46 |
| MS.gene052011 | MS.gene073446 | -0.869456 | 3.05E-66 | -1.69E-46 |
| MS.gene052077 | MS.gene073446 | 0.883294 | 5.07E-71 | -1.69E-46 |
| MS.gene052134 | MS.gene073446 | 0.805656 | 1.20E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene073446 | 0.818677 | 1.73E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene073446 | 0.824293 | 8.73E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene073446 | 0.817442 | 3.29E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene073446 | 0.834954 | 2.22E-56 | -1.69E-46 |
| MS.gene052255 | MS.gene073446 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene073446 | -0.802261 | 6.10E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene073446 | 0.848744 | 5.04E-60 | -1.69E-46 |
| MS.gene052389 | MS.gene073446 | 0.8036 | 3.23E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene073446 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene073446 | 0.805659 | 1.20E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene073446 | 0.815217 | 1.04E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene073446 | 0.839279 | 1.74E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene073446 | 0.857634 | 1.43E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene073446 | 0.820871 | 5.45E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene073446 | 0.854399 | 1.26E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene073446 | 0.850023 | 2.22E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene073446 | 0.810342 | 1.21E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene073446 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene073446 | 0.826257 | 3.00E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene073446 | 0.829098 | 6.23E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene073446 | 0.812674 | 3.76E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene073446 | 0.828397 | 9.19E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene073446 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene073446 | 0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene073446 | 0.824626 | 7.29E-54 | -1.69E-46 |
| MS.gene055367 | MS.gene073446 | 0.807478 | 4.96E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene073446 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene073446 | 0.856716 | 2.67E-62 | -1.69E-46 |
| MS.gene05556 | MS.gene073446 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene073446 | 0.810076 | 1.38E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene073446 | 0.840863 | 6.73E-58 | -1.69E-46 |
| MS.gene056233 | MS.gene073446 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene073446 | 0.827182 | 1.80E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene073446 | 0.829191 | 5.91E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene073446 | 0.804897 | 1.73E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene073446 | -0.840157 | 1.03E-57 | -1.69E-46 |
| MS.gene056979 | MS.gene073446 | 0.898387 | 5.58E-77 | -1.69E-46 |
| MS.gene05702 | MS.gene073446 | 0.817418 | 3.33E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene073446 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene073446 | 0.848814 | 4.82E-60 | -1.69E-46 |
| MS.gene057469 | MS.gene073446 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene057690 | MS.gene073446 | 0.807226 | 5.61E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene073446 | 0.83094 | 2.21E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene073446 | 0.836697 | 8.04E-57 | -1.69E-46 |
| MS.gene058139 | MS.gene073446 | 0.805509 | 1.29E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene073446 | 0.867707 | 1.12E-65 | -1.69E-46 |
| MS.gene058276 | MS.gene073446 | 0.829027 | 6.48E-55 | -1.69E-46 |
| MS.gene058435 | MS.gene073446 | 0.828836 | 7.20E-55 | -1.69E-46 |
| MS.gene058710 | MS.gene073446 | 0.817007 | 4.12E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene073446 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene073446 | 0.813066 | 3.09E-51 | -1.69E-46 |
| MS.gene059011 | MS.gene073446 | 0.803673 | 3.12E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene073446 | 0.848797 | 4.87E-60 | -1.69E-46 |
| MS.gene059128 | MS.gene073446 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene073446 | 0.841202 | 5.48E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene073446 | 0.860503 | 1.97E-63 | -1.69E-46 |
| MS.gene059420 | MS.gene073446 | 0.846638 | 1.91E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene073446 | 0.802059 | 6.72E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene073446 | 0.817526 | 3.15E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene073446 | 0.856489 | 3.11E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene073446 | 0.84499 | 5.37E-59 | -1.69E-46 |
| MS.gene059899 | MS.gene073446 | 0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene073446 | 0.823489 | 1.35E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene073446 | 0.815576 | 8.61E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene073446 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene061002 | MS.gene073446 | 0.800079 | 1.70E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene073446 | 0.85847 | 8.06E-63 | -1.69E-46 |
| MS.gene061114 | MS.gene073446 | -0.856338 | 3.44E-62 | -1.69E-46 |
| MS.gene061154 | MS.gene073446 | 0.810228 | 1.28E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene073446 | 0.853207 | 2.78E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073446.t1 | MTR_2g035470 | 95.925 | 319 | 13 | 0 | 1 | 319 | 1 | 319 | 0.0 | 639 |
| MS.gene073446.t1 | MTR_2g035480 | 81.875 | 320 | 52 | 2 | 1 | 319 | 1 | 315 | 0.0 | 546 |
| MS.gene073446.t1 | MTR_2g035460 | 82.680 | 306 | 52 | 1 | 15 | 319 | 19 | 324 | 0.0 | 536 |
| MS.gene073446.t1 | MTR_2g035460 | 82.528 | 269 | 46 | 1 | 52 | 319 | 1 | 269 | 1.38e-167 | 466 |
| MS.gene073446.t1 | MTR_2g035470 | 95.133 | 226 | 11 | 0 | 94 | 319 | 1 | 226 | 1.70e-162 | 452 |
| MS.gene073446.t1 | MTR_2g035480 | 83.258 | 221 | 36 | 1 | 100 | 319 | 1 | 221 | 6.17e-136 | 384 |
| MS.gene073446.t1 | MTR_2g035480 | 76.136 | 176 | 41 | 1 | 145 | 319 | 18 | 193 | 6.75e-97 | 285 |
| MS.gene073446.t1 | MTR_4g030930 | 27.599 | 279 | 161 | 9 | 24 | 280 | 455 | 714 | 1.57e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073446.t1 | AT1G30910 | 58.278 | 302 | 123 | 2 | 17 | 318 | 19 | 317 | 2.28e-133 | 382 |
| MS.gene073446.t1 | AT5G44720 | 55.592 | 304 | 132 | 3 | 18 | 319 | 6 | 308 | 7.15e-126 | 362 |
| MS.gene073446.t1 | AT5G44720 | 57.080 | 226 | 96 | 1 | 18 | 243 | 6 | 230 | 2.01e-95 | 282 |
| MS.gene073446.t1 | AT1G16540 | 26.923 | 286 | 170 | 8 | 15 | 280 | 527 | 793 | 6.68e-25 | 105 |
| MS.gene073446.t1 | AT1G16540 | 25.649 | 308 | 185 | 6 | 15 | 280 | 527 | 832 | 1.12e-23 | 102 |
Find 81 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACCACTGATTCCTTTA+TGG | 0.111647 | 2.4:-53636007 | MS.gene073446:CDS |
| CAGTGGTTCTCGGATTATTT+AGG | 0.225492 | 2.4:-53633986 | MS.gene073446:CDS |
| AAACAGGATCTCCCAATTTA+AGG | 0.238470 | 2.4:+53632855 | None:intergenic |
| TTATTTATTTGATAGGATTT+AGG | 0.244866 | 2.4:-53636149 | MS.gene073446:intron |
| CCTACCACTGATTCCTTTAT+GGG | 0.268886 | 2.4:-53636006 | MS.gene073446:intron |
| CGGATAGCCATCACTGAAAA+AGG | 0.301036 | 2.4:+53633684 | None:intergenic |
| GGATGGAAAAGTCCTTAAAT+TGG | 0.317212 | 2.4:-53632867 | MS.gene073446:CDS |
| TGCGGTCCCTCGACATAATC+AGG | 0.317256 | 2.4:+53633712 | None:intergenic |
| GGATGGAATCTTCTTCTATA+GGG | 0.319739 | 2.4:-53632889 | MS.gene073446:CDS |
| TCAAGTTCCACTCACTCCTT+CGG | 0.333536 | 2.4:-53636256 | MS.gene073446:CDS |
| TTACTACTTTCAGGAATCAT+TGG | 0.337495 | 2.4:-53633574 | MS.gene073446:intron |
| TGGATGGAATCTTCTTCTAT+AGG | 0.343078 | 2.4:-53632890 | MS.gene073446:CDS |
| GCTGTCTCTTGATTGATTGT+TGG | 0.352501 | 2.4:+53633107 | None:intergenic |
| TTTAGGAAATCCTACTAAAC+TGG | 0.354779 | 2.4:-53633969 | MS.gene073446:CDS |
| ATTCCACGGCATGACTTAAC+AGG | 0.374221 | 2.4:+53636288 | None:intergenic |
| AATATGTAAAATACCCATAA+AGG | 0.377071 | 2.4:+53635993 | None:intergenic |
| CAAGTTCCACTCACTCCTTC+GGG | 0.382382 | 2.4:-53636255 | MS.gene073446:intron |
| ACACCTGAAGCTAAAGTTAC+AGG | 0.385335 | 2.4:-53636324 | MS.gene073446:CDS |
| ACCTCAACCAAAGCAAGCTT+TGG | 0.385439 | 2.4:+53636066 | None:intergenic |
| ATGAAACTCTCATGAAATAT+AGG | 0.390337 | 2.4:-53633064 | MS.gene073446:CDS |
| TGGATGGTTGTGAATTCAAA+AGG | 0.399082 | 2.4:-53636114 | MS.gene073446:CDS |
| GGGAATGGACTGGCTCTGCT+TGG | 0.402728 | 2.4:-53634030 | MS.gene073446:CDS |
| AAACTGGTCCGCTTCAATAC+TGG | 0.403839 | 2.4:-53633953 | MS.gene073446:intron |
| AGTTGAACCAAAGCTTGCTT+TGG | 0.418513 | 2.4:-53636073 | MS.gene073446:CDS |
| CTGAAACGATTCATAAGTAT+TGG | 0.421132 | 2.4:+53633525 | None:intergenic |
| CGAAGCATCGCAGTGGTTCT+CGG | 0.425681 | 2.4:-53633996 | MS.gene073446:CDS |
| CTCCATAGGTCTTCAGAATA+CGG | 0.426148 | 2.4:+53633380 | None:intergenic |
| ATGCCTGTAACTTTAGCTTC+AGG | 0.433437 | 2.4:+53636321 | None:intergenic |
| TATCATCTGGTCTTATGACT+TGG | 0.439021 | 2.4:+53633036 | None:intergenic |
| TTGAAGCGGACCAGTTTAGT+AGG | 0.456113 | 2.4:+53633959 | None:intergenic |
| GTCATGATATAGTGTGGAAC+TGG | 0.465897 | 2.4:-53632910 | MS.gene073446:CDS |
| GGAATGGACTGGCTCTGCTT+GGG | 0.467842 | 2.4:-53634029 | MS.gene073446:CDS |
| CTTGTGTTGCAGGTCTACTT+TGG | 0.472504 | 2.4:-53632932 | MS.gene073446:intron |
| TATTTCATGAGAGTTTCATT+TGG | 0.483242 | 2.4:+53633068 | None:intergenic |
| GATGGAAAAGTCCTTAAATT+GGG | 0.484488 | 2.4:-53632866 | MS.gene073446:CDS |
| AATCAAGAGACAGCAAAAGT+TGG | 0.492806 | 2.4:-53633098 | MS.gene073446:CDS |
| TGGTGCAGTATCCTTGTTGA+AGG | 0.496143 | 2.4:-53633410 | MS.gene073446:intron |
| ACTTTGAGAGGTTCCATCCC+TGG | 0.496805 | 2.4:+53634097 | None:intergenic |
| GTTACAGTGCTGAAAGCACC+AGG | 0.502114 | 2.4:-53634115 | MS.gene073446:intron |
| TAGGTGGGATAGACAATGGA+TGG | 0.502735 | 2.4:-53636130 | MS.gene073446:CDS |
| TCCGTACTTAATCGCATCTC+AGG | 0.502861 | 2.4:-53633665 | MS.gene073446:intron |
| AACCGTATTCTGAAGACCTA+TGG | 0.503411 | 2.4:-53633382 | MS.gene073446:CDS |
| ACTCTCATGAAATATAGGTC+TGG | 0.506523 | 2.4:-53633059 | MS.gene073446:CDS |
| ATGATATTACAGTGTGGGAA+TGG | 0.509064 | 2.4:-53634045 | MS.gene073446:CDS |
| CAAGCTGTGTTACCGTTGTA+AGG | 0.522106 | 2.4:-53633321 | MS.gene073446:intron |
| TTTATTTGATAGGATTTAGG+TGG | 0.525152 | 2.4:-53636146 | MS.gene073446:intron |
| CGAGAACCACTGCGATGCTT+CGG | 0.528277 | 2.4:+53633997 | None:intergenic |
| CAGTGTTCATCAAAAGCCTC+AGG | 0.529540 | 2.4:+53636033 | None:intergenic |
| ACCAAAGCTTGCTTTGGTTG+AGG | 0.529657 | 2.4:-53636067 | MS.gene073446:CDS |
| TTATCTTGAAATCTCTCCAT+AGG | 0.544511 | 2.4:+53633366 | None:intergenic |
| ACCTGAGATGCGATTAAGTA+CGG | 0.548607 | 2.4:+53633664 | None:intergenic |
| GAATCTTCTTCTATAGGGGA+TGG | 0.549698 | 2.4:-53632884 | MS.gene073446:CDS |
| TTATTTGATAGGATTTAGGT+GGG | 0.556843 | 2.4:-53636145 | MS.gene073446:intron |
| ACTGGCTCTGCTTGGGACGA+AGG | 0.560194 | 2.4:-53634022 | MS.gene073446:CDS |
| TGAGGTTGAATTCCCACCTG+AGG | 0.566023 | 2.4:-53636049 | MS.gene073446:CDS |
| AGCAGATGATATTACAGTGT+GGG | 0.567461 | 2.4:-53634050 | MS.gene073446:CDS |
| GGATGGTTGTGAATTCAAAA+GGG | 0.567997 | 2.4:-53636113 | MS.gene073446:CDS |
| GATTTAGGTGGGATAGACAA+TGG | 0.568641 | 2.4:-53636134 | MS.gene073446:CDS |
| CTTACAACGGTAACACAGCT+TGG | 0.581977 | 2.4:+53633322 | None:intergenic |
| GATGGAATCTTCTTCTATAG+GGG | 0.591895 | 2.4:-53632888 | MS.gene073446:CDS |
| TTGTTCAAACAAACTTTGAG+AGG | 0.593649 | 2.4:+53634085 | None:intergenic |
| AGTGCTGAAAGCACCAGGGA+TGG | 0.596777 | 2.4:-53634110 | MS.gene073446:CDS |
| ATGATACCCGAAGGAGTGAG+TGG | 0.598807 | 2.4:+53636249 | None:intergenic |
| TGTTCATCAAAAGCCTCAGG+TGG | 0.613034 | 2.4:+53636036 | None:intergenic |
| CCCATAAAGGAATCAGTGGT+AGG | 0.613095 | 2.4:+53636006 | None:intergenic |
| AATACCCATAAAGGAATCAG+TGG | 0.615368 | 2.4:+53636002 | None:intergenic |
| TGATATAGTGTGGAACTGGA+TGG | 0.619389 | 2.4:-53632906 | MS.gene073446:CDS |
| GTAGACCCTGATTATGTCGA+GGG | 0.620165 | 2.4:-53633718 | MS.gene073446:CDS |
| AGATGTTACCAGTATTGAAG+CGG | 0.621179 | 2.4:+53633945 | None:intergenic |
| GCGGTCCCTCGACATAATCA+GGG | 0.622792 | 2.4:+53633713 | None:intergenic |
| TGCACTAAACGAGCTTCTAG+AGG | 0.628214 | 2.4:-53633550 | MS.gene073446:CDS |
| CTTGAGAAAGTGAAATTCCA+CGG | 0.628894 | 2.4:+53636274 | None:intergenic |
| TATCCTGTTAAGTCATGCCG+TGG | 0.637857 | 2.4:-53636291 | MS.gene073446:CDS |
| ACTTTGGTCATGATATAGTG+TGG | 0.638612 | 2.4:-53632916 | MS.gene073446:CDS |
| AGTAGACCCTGATTATGTCG+AGG | 0.644567 | 2.4:-53633719 | MS.gene073446:CDS |
| ATTACAGTGTGGGAATGGAC+TGG | 0.653012 | 2.4:-53634040 | MS.gene073446:CDS |
| GTTCATCAAAAGCCTCAGGT+GGG | 0.673084 | 2.4:+53636037 | None:intergenic |
| ACGGTTCACAACCTTCAACA+AGG | 0.676913 | 2.4:+53633399 | None:intergenic |
| AAGGAGCCGAAGCATCGCAG+TGG | 0.695660 | 2.4:-53634003 | MS.gene073446:CDS |
| TAGCAGATGATATTACAGTG+TGG | 0.696993 | 2.4:-53634051 | MS.gene073446:CDS |
| TTACAGTGCTGAAAGCACCA+GGG | 0.762056 | 2.4:-53634114 | MS.gene073446:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAATTTATTTATTTGAT+AGG | - | chr2.4:53633018-53633037 | MS.gene073446:intron | 10.0% |
| !!! | TAAGATGATATTTTTATATT+TGG | - | chr2.4:53633632-53633651 | MS.gene073446:intron | 10.0% |
| !! | TTATTTATTTGATAGGATTT+AGG | - | chr2.4:53633025-53633044 | MS.gene073446:CDS | 15.0% |
| !!! | TGTTTTACTTGAATAAATAA+TGG | - | chr2.4:53633232-53633251 | MS.gene073446:intron | 15.0% |
| !!! | TTAATTTTTTTGTTTTCTCA+TGG | + | chr2.4:53634945-53634964 | None:intergenic | 15.0% |
| !!! | TTTTCATAATTTTATCACAA+AGG | + | chr2.4:53634754-53634773 | None:intergenic | 15.0% |
| !! | AATATGTAAAATACCCATAA+AGG | + | chr2.4:53633184-53633203 | None:intergenic | 20.0% |
| !! | AGATGATAGAAACAAAAAAA+GGG | - | chr2.4:53636153-53636172 | MS.gene073446:intron | 20.0% |
| !!! | AACTTTTTGATAACATAAAC+AGG | + | chr2.4:53636338-53636357 | None:intergenic | 20.0% |
| !!! | ATTATTGATGATGCTTATTA+TGG | - | chr2.4:53636037-53636056 | MS.gene073446:CDS | 20.0% |
| !!! | ATTTGTTTTACATCTTCTAT+TGG | + | chr2.4:53634533-53634552 | None:intergenic | 20.0% |
| !!! | TCATTGACATTTTTTATCAA+AGG | - | chr2.4:53634116-53634135 | MS.gene073446:intron | 20.0% |
| !!! | TTTTGTTTGCTTATCATAAA+AGG | - | chr2.4:53634481-53634500 | MS.gene073446:intron | 20.0% |
| ! | AATACTTAGCACAAATAACA+TGG | + | chr2.4:53633901-53633920 | None:intergenic | 25.0% |
| ! | ATGAAACTCTCATGAAATAT+AGG | - | chr2.4:53636110-53636129 | MS.gene073446:CDS | 25.0% |
| ! | CAGATGATAGAAACAAAAAA+AGG | - | chr2.4:53636152-53636171 | MS.gene073446:intron | 25.0% |
| ! | GCATGAAAACATTAATACTT+GGG | + | chr2.4:53635676-53635695 | None:intergenic | 25.0% |
| ! | TATTTCATGAGAGTTTCATT+TGG | + | chr2.4:53636109-53636128 | None:intergenic | 25.0% |
| ! | TTATGATAAGCAAACAAAAC+AGG | + | chr2.4:53634480-53634499 | None:intergenic | 25.0% |
| ! | TTATTTGATAGGATTTAGGT+GGG | - | chr2.4:53633029-53633048 | MS.gene073446:CDS | 25.0% |
| ! | TTGATGAAGTAAACCTTTAT+GGG | - | chr2.4:53633532-53633551 | MS.gene073446:CDS | 25.0% |
| ! | TTTATTTGATAGGATTTAGG+TGG | - | chr2.4:53633028-53633047 | MS.gene073446:CDS | 25.0% |
| ! | TTTGATGAAGTAAACCTTTA+TGG | - | chr2.4:53633531-53633550 | MS.gene073446:CDS | 25.0% |
| !! | AAAATGTACCTTTTGTTCAT+TGG | - | chr2.4:53636205-53636224 | MS.gene073446:intron | 25.0% |
| !! | AATTTTATCACAAAGGCTTA+TGG | + | chr2.4:53634747-53634766 | None:intergenic | 25.0% |
| !! | ATAAGCAGTTTTTCATTTCA+GGG | - | chr2.4:53635827-53635846 | MS.gene073446:intron | 25.0% |
| !! | GAAGGCTGTAAATATATTTT+TGG | + | chr2.4:53634352-53634371 | None:intergenic | 25.0% |
| !!! | CTTTTTTTGTTTCTATCATC+TGG | + | chr2.4:53636154-53636173 | None:intergenic | 25.0% |
| !!! | TAACATCTTTGAAACCTTAA+CGG | - | chr2.4:53635244-53635263 | MS.gene073446:intron | 25.0% |
| AAAAAGAATATGATACCCGA+AGG | + | chr2.4:53632937-53632956 | None:intergenic | 30.0% | |
| AAAGGCTAACTTATGTCTTT+AGG | + | chr2.4:53633672-53633691 | None:intergenic | 30.0% | |
| AAATCAAAACCATGACAACA+TGG | + | chr2.4:53633484-53633503 | None:intergenic | 30.0% | |
| AATCAAAACCATGACAACAT+GGG | + | chr2.4:53633483-53633502 | None:intergenic | 30.0% | |
| AATTAATGCCTTTCAAGATC+TGG | + | chr2.4:53633714-53633733 | None:intergenic | 30.0% | |
| ACATTAAATGAGATAAGGTC+CGG | - | chr2.4:53633272-53633291 | MS.gene073446:intron | 30.0% | |
| ACATTATTTGAGAGTTATCG+TGG | + | chr2.4:53635407-53635426 | None:intergenic | 30.0% | |
| ACTTATCACTGAAGAGTTTA+TGG | + | chr2.4:53634810-53634829 | None:intergenic | 30.0% | |
| AGACCAGATTCTTAAAAGTT+TGG | + | chr2.4:53633349-53633368 | None:intergenic | 30.0% | |
| AGTATATCCTTTCAAAGTAG+TGG | - | chr2.4:53634441-53634460 | MS.gene073446:intron | 30.0% | |
| CAAAATTACCTCTATCTTTG+TGG | + | chr2.4:53634002-53634021 | None:intergenic | 30.0% | |
| CTGAAACGATTCATAAGTAT+TGG | + | chr2.4:53635652-53635671 | None:intergenic | 30.0% | |
| CTTTGTGGATAGAAAAAACA+TGG | + | chr2.4:53633987-53634006 | None:intergenic | 30.0% | |
| GAAATTAGTGATGTTACATG+TGG | - | chr2.4:53633792-53633811 | MS.gene073446:intron | 30.0% | |
| GACCAGATTCTTAAAAGTTT+GGG | + | chr2.4:53633348-53633367 | None:intergenic | 30.0% | |
| GATGGAAAAGTCCTTAAATT+GGG | - | chr2.4:53636308-53636327 | MS.gene073446:CDS | 30.0% | |
| GCTGAGAAGAAGTTAAAAAT+AGG | + | chr2.4:53634717-53634736 | None:intergenic | 30.0% | |
| GGCATGAAAACATTAATACT+TGG | + | chr2.4:53635677-53635696 | None:intergenic | 30.0% | |
| GTCTCACATTAAATGAGATA+AGG | - | chr2.4:53633267-53633286 | MS.gene073446:intron | 30.0% | |
| GTTTGAATTGAATGTACATG+TGG | + | chr2.4:53634865-53634884 | None:intergenic | 30.0% | |
| TAAACACGACATTGATAAGT+TGG | + | chr2.4:53634232-53634251 | None:intergenic | 30.0% | |
| TGATTCCTGAAAGTAGTAAA+TGG | + | chr2.4:53635599-53635618 | None:intergenic | 30.0% | |
| TGGATAGAAAAAACATGGTT+GGG | + | chr2.4:53633982-53634001 | None:intergenic | 30.0% | |
| TTAATCAACATGACCCATAA+AGG | + | chr2.4:53633548-53633567 | None:intergenic | 30.0% | |
| TTACTACTTTCAGGAATCAT+TGG | - | chr2.4:53635600-53635619 | MS.gene073446:intron | 30.0% | |
| TTATCTTGAAATCTCTCCAT+AGG | + | chr2.4:53635811-53635830 | None:intergenic | 30.0% | |
| TTGTTCAAACAAACTTTGAG+AGG | + | chr2.4:53635092-53635111 | None:intergenic | 30.0% | |
| TTTAGGAAATCCTACTAAAC+TGG | - | chr2.4:53635205-53635224 | MS.gene073446:intron | 30.0% | |
| ! | AAGATCTGGAGTACATTTAA+AGG | + | chr2.4:53633700-53633719 | None:intergenic | 30.0% |
| ! | GATAAGCAGTTTTTCATTTC+AGG | - | chr2.4:53635826-53635845 | MS.gene073446:intron | 30.0% |
| ! | TAGAAGTTTTCACCTTACAA+CGG | + | chr2.4:53635868-53635887 | None:intergenic | 30.0% |
| ! | TCAATCACTTGCTTAATTTG+TGG | + | chr2.4:53634670-53634689 | None:intergenic | 30.0% |
| ! | TTTTCTATCCACAAAGATAG+AGG | - | chr2.4:53633991-53634010 | MS.gene073446:CDS | 30.0% |
| !! | AATCACTTGCTTAATTTGTG+GGG | + | chr2.4:53634668-53634687 | None:intergenic | 30.0% |
| !! | AGATAGAGGTAATTTTGAAG+TGG | - | chr2.4:53634005-53634024 | MS.gene073446:CDS | 30.0% |
| !! | CAATCACTTGCTTAATTTGT+GGG | + | chr2.4:53634669-53634688 | None:intergenic | 30.0% |
| !! | CACTCATTTTGAAAATGACA+AGG | + | chr2.4:53634622-53634641 | None:intergenic | 30.0% |
| !! | TCATTTTGAAAATGACAAGG+AGG | + | chr2.4:53634619-53634638 | None:intergenic | 30.0% |
| !!! | GATAGAGGTAATTTTGAAGT+GGG | - | chr2.4:53634006-53634025 | MS.gene073446:CDS | 30.0% |
| !!! | TGCTGTTTTATTATCCGTTA+AGG | + | chr2.4:53635261-53635280 | None:intergenic | 30.0% |
| AAAAGACAGATGTTACAGCT+GGG | - | chr2.4:53634408-53634427 | MS.gene073446:intron | 35.0% | |
| AAACAGGATCTCCCAATTTA+AGG | + | chr2.4:53636322-53636341 | None:intergenic | 35.0% | |
| AAACCAACCAGTCAATTGAA+CGG | + | chr2.4:53635963-53635982 | None:intergenic | 35.0% | |
| AATACCCATAAAGGAATCAG+TGG | + | chr2.4:53633175-53633194 | None:intergenic | 35.0% | |
| AATCAAGAGACAGCAAAAGT+TGG | - | chr2.4:53636076-53636095 | MS.gene073446:CDS | 35.0% | |
| AATGTACTCCAGATCTTGAA+AGG | - | chr2.4:53633703-53633722 | MS.gene073446:CDS | 35.0% | |
| ACATGTCACCAATGAACAAA+AGG | + | chr2.4:53636216-53636235 | None:intergenic | 35.0% | |
| ACTCTCATGAAATATAGGTC+TGG | - | chr2.4:53636115-53636134 | MS.gene073446:CDS | 35.0% | |
| ACTTTGGTCATGATATAGTG+TGG | - | chr2.4:53636258-53636277 | MS.gene073446:CDS | 35.0% | |
| AGCAGATGATATTACAGTGT+GGG | - | chr2.4:53635124-53635143 | MS.gene073446:intron | 35.0% | |
| ATAGAAAAAACATGGTTGGG+AGG | + | chr2.4:53633979-53633998 | None:intergenic | 35.0% | |
| ATCAAAACCATGACAACATG+GGG | + | chr2.4:53633482-53633501 | None:intergenic | 35.0% | |
| ATGATATTACAGTGTGGGAA+TGG | - | chr2.4:53635129-53635148 | MS.gene073446:intron | 35.0% | |
| CAGCACTAACAATGTTAAGA+AGG | - | chr2.4:53635276-53635295 | MS.gene073446:intron | 35.0% | |
| CATATGCATGTAATGCACAA+TGG | - | chr2.4:53635342-53635361 | MS.gene073446:intron | 35.0% | |
| CATGAAACATGACATGGATT+AGG | - | chr2.4:53633820-53633839 | MS.gene073446:intron | 35.0% | |
| CTAATCCATGTCATGTTTCA+TGG | + | chr2.4:53633822-53633841 | None:intergenic | 35.0% | |
| CTATGAAACACTAGACACAA+AGG | + | chr2.4:53635698-53635717 | None:intergenic | 35.0% | |
| CTGGAGTACATTTAAAGGTT+GGG | + | chr2.4:53633695-53633714 | None:intergenic | 35.0% | |
| CTTGAGAAAGTGAAATTCCA+CGG | + | chr2.4:53632903-53632922 | None:intergenic | 35.0% | |
| GATAGTTCCACTACTTTGAA+AGG | + | chr2.4:53634451-53634470 | None:intergenic | 35.0% | |
| GATGGAATCTTCTTCTATAG+GGG | - | chr2.4:53636286-53636305 | MS.gene073446:CDS | 35.0% | |
| GATTCTTAAAAGTTTGGGTC+TGG | + | chr2.4:53633343-53633362 | None:intergenic | 35.0% | |
| GGATGGAAAAGTCCTTAAAT+TGG | - | chr2.4:53636307-53636326 | MS.gene073446:CDS | 35.0% | |
| GGATGGAATCTTCTTCTATA+GGG | - | chr2.4:53636285-53636304 | MS.gene073446:CDS | 35.0% | |
| GGATGGTTGTGAATTCAAAA+GGG | - | chr2.4:53633061-53633080 | MS.gene073446:CDS | 35.0% | |
| GTACATTTAAAGGTTGGGAA+AGG | + | chr2.4:53633690-53633709 | None:intergenic | 35.0% | |
| GTGGATAGAAAAAACATGGT+TGG | + | chr2.4:53633983-53634002 | None:intergenic | 35.0% | |
| TAACTCAAACAACAGTCAGA+AGG | + | chr2.4:53634908-53634927 | None:intergenic | 35.0% | |
| TAGCAGATGATATTACAGTG+TGG | - | chr2.4:53635123-53635142 | MS.gene073446:intron | 35.0% | |
| TCGATAAAAGAGACTAACAC+AGG | - | chr2.4:53634305-53634324 | MS.gene073446:intron | 35.0% | |
| TGGATGGAATCTTCTTCTAT+AGG | - | chr2.4:53636284-53636303 | MS.gene073446:CDS | 35.0% | |
| TGGATGGTTGTGAATTCAAA+AGG | - | chr2.4:53633060-53633079 | MS.gene073446:CDS | 35.0% | |
| ! | ACAGCCAATGATGTTGATTA+GGG | + | chr2.4:53634035-53634054 | None:intergenic | 35.0% |
| ! | ACTTGCCATTTACTACTTTC+AGG | - | chr2.4:53635591-53635610 | MS.gene073446:intron | 35.0% |
| ! | AGATGTTACCAGTATTGAAG+CGG | + | chr2.4:53635232-53635251 | None:intergenic | 35.0% |
| ! | AGCCTTCTAGTTAATTCCAA+GGG | - | chr2.4:53634365-53634384 | MS.gene073446:intron | 35.0% |
| ! | GTCCGGACATAAGTTTTTAA+GGG | - | chr2.4:53633289-53633308 | MS.gene073446:intron | 35.0% |
| ! | TCTGGAGTACATTTAAAGGT+TGG | + | chr2.4:53633696-53633715 | None:intergenic | 35.0% |
| !! | GACCCAAACTTTTAAGAATC+TGG | - | chr2.4:53633343-53633362 | MS.gene073446:CDS | 35.0% |
| !! | TATCATCTGGTCTTATGACT+TGG | + | chr2.4:53636141-53636160 | None:intergenic | 35.0% |
| !! | TCCGGACATAAGTTTTTAAG+GGG | - | chr2.4:53633290-53633309 | MS.gene073446:intron | 35.0% |
| !! | TTTTAAGAATCTGGTCTGAG+TGG | - | chr2.4:53633352-53633371 | MS.gene073446:CDS | 35.0% |
| AAAAAGCGATCTGAACCAAC+CGG | - | chr2.4:53635916-53635935 | MS.gene073446:intron | 40.0% | |
| AAACCATGCGATCATGATCA+TGG | + | chr2.4:53635007-53635026 | None:intergenic | 40.0% | |
| ACACCTGAAGCTAAAGTTAC+AGG | - | chr2.4:53632850-53632869 | MS.gene073446:CDS | 40.0% | |
| ACCTGAGATGCGATTAAGTA+CGG | + | chr2.4:53635513-53635532 | None:intergenic | 40.0% | |
| ATGTGAAATGCTTGTGTTGC+AGG | - | chr2.4:53636232-53636251 | MS.gene073446:intron | 40.0% | |
| ATTGGCTGTCATTACACACA+TGG | - | chr2.4:53634046-53634065 | MS.gene073446:CDS | 40.0% | |
| CAGTGGTTCTCGGATTATTT+AGG | - | chr2.4:53635188-53635207 | MS.gene073446:intron | 40.0% | |
| CCCCCTTAAAAACTTATGTC+CGG | + | chr2.4:53633294-53633313 | None:intergenic | 40.0% | |
| CTCCATAGGTCTTCAGAATA+CGG | + | chr2.4:53635797-53635816 | None:intergenic | 40.0% | |
| GAAAAGACAGATGTTACAGC+TGG | - | chr2.4:53634407-53634426 | MS.gene073446:intron | 40.0% | |
| GAATCTTCTTCTATAGGGGA+TGG | - | chr2.4:53636290-53636309 | MS.gene073446:CDS | 40.0% | |
| GAATGCCATGAAACATGACA+TGG | - | chr2.4:53633814-53633833 | MS.gene073446:intron | 40.0% | |
| GATTTAGGTGGGATAGACAA+TGG | - | chr2.4:53633040-53633059 | MS.gene073446:CDS | 40.0% | |
| GCATCCCTAATCAACATCAT+TGG | - | chr2.4:53634028-53634047 | MS.gene073446:CDS | 40.0% | |
| GCTGTCTCTTGATTGATTGT+TGG | + | chr2.4:53636070-53636089 | None:intergenic | 40.0% | |
| GTCACCCAACAAAGATTAGT+CGG | + | chr2.4:53633938-53633957 | None:intergenic | 40.0% | |
| GTCATGATATAGTGTGGAAC+TGG | - | chr2.4:53636264-53636283 | MS.gene073446:CDS | 40.0% | |
| TCAAAACCATGACAACATGG+GGG | + | chr2.4:53633481-53633500 | None:intergenic | 40.0% | |
| TCCCCTTGGAATTAACTAGA+AGG | + | chr2.4:53634370-53634389 | None:intergenic | 40.0% | |
| TGATATAGTGTGGAACTGGA+TGG | - | chr2.4:53636268-53636287 | MS.gene073446:CDS | 40.0% | |
| TTTCCATGATCATGATCGCA+TGG | - | chr2.4:53635001-53635020 | MS.gene073446:intron | 40.0% | |
| ! | AACCGTATTCTGAAGACCTA+TGG | - | chr2.4:53635792-53635811 | MS.gene073446:intron | 40.0% |
| ! | AGATCACGCGATTGAGATTT+TGG | - | chr2.4:53635734-53635753 | MS.gene073446:intron | 40.0% |
| ! | AGTTGAACCAAAGCTTGCTT+TGG | - | chr2.4:53633101-53633120 | MS.gene073446:CDS | 40.0% |
| ! | ATGCCTGTAACTTTAGCTTC+AGG | + | chr2.4:53632856-53632875 | None:intergenic | 40.0% |
| ! | CAGCCTTCTAGTTAATTCCA+AGG | - | chr2.4:53634364-53634383 | MS.gene073446:intron | 40.0% |
| ! | CGACATTGATAAGTTGGCAA+CGG | + | chr2.4:53634226-53634245 | None:intergenic | 40.0% |
| ! | GACAGCCAATGATGTTGATT+AGG | + | chr2.4:53634036-53634055 | None:intergenic | 40.0% |
| ! | GCCTTCTAGTTAATTCCAAG+GGG | - | chr2.4:53634366-53634385 | MS.gene073446:intron | 40.0% |
| ! | GGTCCGGACATAAGTTTTTA+AGG | - | chr2.4:53633288-53633307 | MS.gene073446:intron | 40.0% |
| ! | GTCACCGACTAATCTTTGTT+GGG | - | chr2.4:53633931-53633950 | MS.gene073446:intron | 40.0% |
| ! | GTGGTCATGAGTTTGATTTC+TGG | - | chr2.4:53633398-53633417 | MS.gene073446:CDS | 40.0% |
| ! | TGAGGCTTTTGATGAACACT+GGG | - | chr2.4:53633143-53633162 | MS.gene073446:intron | 40.0% |
| ! | TGTCACCGACTAATCTTTGT+TGG | - | chr2.4:53633930-53633949 | MS.gene073446:intron | 40.0% |
| !! | ACATGACATGGATTAGGTGT+AGG | - | chr2.4:53633826-53633845 | MS.gene073446:intron | 40.0% |
| !! | ACCTACCACTGATTCCTTTA+TGG | - | chr2.4:53633167-53633186 | MS.gene073446:intron | 40.0% |
| !! | ATAAGTTTTTAAGGGGGAGC+TGG | - | chr2.4:53633297-53633316 | MS.gene073446:intron | 40.0% |
| !! | CAGTCAGAAGGATAGTTTTG+AGG | + | chr2.4:53634896-53634915 | None:intergenic | 40.0% |
| !! | CATGACATGGATTAGGTGTA+GGG | - | chr2.4:53633827-53633846 | MS.gene073446:intron | 40.0% |
| !! | CCGGACATAAGTTTTTAAGG+GGG | - | chr2.4:53633291-53633310 | MS.gene073446:intron | 40.0% |
| !! | CCTACCACTGATTCCTTTAT+GGG | - | chr2.4:53633168-53633187 | MS.gene073446:intron | 40.0% |
| !! | CTAACATAGCTTTTTCCCCT+TGG | + | chr2.4:53634384-53634403 | None:intergenic | 40.0% |
| !! | CTAACTTCTGAAGCTGCAAT+TGG | + | chr2.4:53635432-53635451 | None:intergenic | 40.0% |
| !! | TTGACTGGTTGGTTTGATCT+CGG | - | chr2.4:53635968-53635987 | MS.gene073446:intron | 40.0% |
| !!! | ATTGAGATTTTGGTGCCATG+TGG | - | chr2.4:53635744-53635763 | MS.gene073446:intron | 40.0% |
| AAACTGGTCCGCTTCAATAC+TGG | - | chr2.4:53635221-53635240 | MS.gene073446:intron | 45.0% | |
| AACAAGGATACTGCACCACA+TGG | + | chr2.4:53635762-53635781 | None:intergenic | 45.0% | |
| ACCATCAATCCCTACGTCAA+TGG | - | chr2.4:53634070-53634089 | MS.gene073446:CDS | 45.0% | |
| ACCATTGACGTAGGGATTGA+TGG | + | chr2.4:53634074-53634093 | None:intergenic | 45.0% | |
| ACCTCAACCAAAGCAAGCTT+TGG | + | chr2.4:53633111-53633130 | None:intergenic | 45.0% | |
| ACGGTTCACAACCTTCAACA+AGG | + | chr2.4:53635778-53635797 | None:intergenic | 45.0% | |
| AGCCATCACTGAAAAAGGTC+TGG | + | chr2.4:53635488-53635507 | None:intergenic | 45.0% | |
| AGTAGACCCTGATTATGTCG+AGG | - | chr2.4:53635455-53635474 | MS.gene073446:intron | 45.0% | |
| ATATGCGTCACCATTGACGT+AGG | + | chr2.4:53634083-53634102 | None:intergenic | 45.0% | |
| ATTACAGTGTGGGAATGGAC+TGG | - | chr2.4:53635134-53635153 | MS.gene073446:intron | 45.0% | |
| ATTCCACGGCATGACTTAAC+AGG | + | chr2.4:53632889-53632908 | None:intergenic | 45.0% | |
| CAAGCTGTGTTACCGTTGTA+AGG | - | chr2.4:53635853-53635872 | MS.gene073446:intron | 45.0% | |
| CAGTGTTCATCAAAAGCCTC+AGG | + | chr2.4:53633144-53633163 | None:intergenic | 45.0% | |
| CCCATAAAGGAATCAGTGGT+AGG | + | chr2.4:53633171-53633190 | None:intergenic | 45.0% | |
| CGGATAGCCATCACTGAAAA+AGG | + | chr2.4:53635493-53635512 | None:intergenic | 45.0% | |
| CTTACAACGGTAACACAGCT+TGG | + | chr2.4:53635855-53635874 | None:intergenic | 45.0% | |
| CTTGTGTTGCAGGTCTACTT+TGG | - | chr2.4:53636242-53636261 | MS.gene073446:intron | 45.0% | |
| GAACCGTTCAATTGACTGGT+TGG | - | chr2.4:53635957-53635976 | MS.gene073446:intron | 45.0% | |
| GTAGACCCTGATTATGTCGA+GGG | - | chr2.4:53635456-53635475 | MS.gene073446:intron | 45.0% | |
| GTTCATCAAAAGCCTCAGGT+GGG | + | chr2.4:53633140-53633159 | None:intergenic | 45.0% | |
| GTTGGGTGACAACCTTTAGA+AGG | - | chr2.4:53633948-53633967 | MS.gene073446:intron | 45.0% | |
| TAGGTGGGATAGACAATGGA+TGG | - | chr2.4:53633044-53633063 | MS.gene073446:CDS | 45.0% | |
| TATCCTGTTAAGTCATGCCG+TGG | - | chr2.4:53632883-53632902 | MS.gene073446:CDS | 45.0% | |
| TATGCGTCACCATTGACGTA+GGG | + | chr2.4:53634082-53634101 | None:intergenic | 45.0% | |
| TCAAGTTCCACTCACTCCTT+CGG | - | chr2.4:53632918-53632937 | MS.gene073446:CDS | 45.0% | |
| TCACTGAAAAAGGTCTGGTG+CGG | + | chr2.4:53635483-53635502 | None:intergenic | 45.0% | |
| TCCGTACTTAATCGCATCTC+AGG | - | chr2.4:53635509-53635528 | MS.gene073446:intron | 45.0% | |
| TGAACGGTTCCTGGTTCAAT+AGG | + | chr2.4:53635947-53635966 | None:intergenic | 45.0% | |
| TGCACTAAACGAGCTTCTAG+AGG | - | chr2.4:53635624-53635643 | MS.gene073446:intron | 45.0% | |
| TGGTGCAGTATCCTTGTTGA+AGG | - | chr2.4:53635764-53635783 | MS.gene073446:intron | 45.0% | |
| TGTCATGCACAACGTGTCTA+CGG | + | chr2.4:53635377-53635396 | None:intergenic | 45.0% | |
| TGTTCATCAAAAGCCTCAGG+TGG | + | chr2.4:53633141-53633160 | None:intergenic | 45.0% | |
| TTGAAGCGGACCAGTTTAGT+AGG | + | chr2.4:53635218-53635237 | None:intergenic | 45.0% | |
| ! | ACCAAAGCTTGCTTTGGTTG+AGG | - | chr2.4:53633107-53633126 | MS.gene073446:CDS | 45.0% |
| ! | CCTGGTTCAATAGGTTGAAC+CGG | + | chr2.4:53635938-53635957 | None:intergenic | 45.0% |
| ! | CTGAGGCTTTTGATGAACAC+TGG | - | chr2.4:53633142-53633161 | MS.gene073446:intron | 45.0% |
| ! | CTTTGTTTCCCAACTGCAAC+TGG | + | chr2.4:53635540-53635559 | None:intergenic | 45.0% |
| ! | GTTCAATAGGTTGAACCGGT+TGG | + | chr2.4:53635934-53635953 | None:intergenic | 45.0% |
| !! | ACATGGATTAGGTGTAGGGA+AGG | - | chr2.4:53633831-53633850 | MS.gene073446:intron | 45.0% |
| !! | ATGGATTAGGTGTAGGGAAG+GGG | - | chr2.4:53633833-53633852 | MS.gene073446:intron | 45.0% |
| !! | CATGGATTAGGTGTAGGGAA+GGG | - | chr2.4:53633832-53633851 | MS.gene073446:intron | 45.0% |
| !! | TTACAGTGCTGAAAGCACCA+GGG | - | chr2.4:53635060-53635079 | MS.gene073446:intron | 45.0% |
| !!! | CACCAGACCTTTTTCAGTGA+TGG | - | chr2.4:53635483-53635502 | MS.gene073446:intron | 45.0% |
| AGACAGATGTTACAGCTGGG+TGG | - | chr2.4:53634411-53634430 | MS.gene073446:intron | 50.0% | |
| AGGTCAGTCCAGTTGCAGTT+GGG | - | chr2.4:53635529-53635548 | MS.gene073446:intron | 50.0% | |
| ATGATACCCGAAGGAGTGAG+TGG | + | chr2.4:53632928-53632947 | None:intergenic | 50.0% | |
| ATTAGGTGTAGGGAAGGGGT+GGG | - | chr2.4:53633837-53633856 | MS.gene073446:intron | 50.0% | |
| CAACGGGTCTCTTAAGCATG+TGG | - | chr2.4:53633379-53633398 | MS.gene073446:CDS | 50.0% | |
| CAAGTACCCCCATGTTGTCA+TGG | - | chr2.4:53633472-53633491 | MS.gene073446:intron | 50.0% | |
| CAAGTTCCACTCACTCCTTC+GGG | - | chr2.4:53632919-53632938 | MS.gene073446:CDS | 50.0% | |
| CACAACGTGTCTACGGTTCA+TGG | + | chr2.4:53635370-53635389 | None:intergenic | 50.0% | |
| CCAGGAACCGTTCAATTGAC+TGG | - | chr2.4:53635953-53635972 | MS.gene073446:intron | 50.0% | |
| CCAGTCAATTGAACGGTTCC+TGG | + | chr2.4:53635956-53635975 | None:intergenic | 50.0% | |
| CCGGTTCAACCTATTGAACC+AGG | - | chr2.4:53635935-53635954 | MS.gene073446:intron | 50.0% | |
| CTGGTCTGAGTGGTAAGCAA+CGG | - | chr2.4:53633362-53633381 | MS.gene073446:CDS | 50.0% | |
| GAGACATGAGAAGGAGATGG+AGG | - | chr2.4:53633859-53633878 | MS.gene073446:intron | 50.0% | |
| TGAGGTTGAATTCCCACCTG+AGG | - | chr2.4:53633125-53633144 | MS.gene073446:intron | 50.0% | |
| TGGGAGACATGAGAAGGAGA+TGG | - | chr2.4:53633856-53633875 | MS.gene073446:intron | 50.0% | |
| TGGGAGGAGAGACCTTCTAA+AGG | + | chr2.4:53633963-53633982 | None:intergenic | 50.0% | |
| TGGTCTGAGTGGTAAGCAAC+GGG | - | chr2.4:53633363-53633382 | MS.gene073446:CDS | 50.0% | |
| ! | ACTTTGAGAGGTTCCATCCC+TGG | + | chr2.4:53635080-53635099 | None:intergenic | 50.0% |
| !! | GTTACAGTGCTGAAAGCACC+AGG | - | chr2.4:53635059-53635078 | MS.gene073446:intron | 50.0% |
| !!! | TAAGGGGGAGCTGGTTTTGT+TGG | - | chr2.4:53633306-53633325 | MS.gene073446:intron | 50.0% |
| AAGGGGTGGGAGACATGAGA+AGG | - | chr2.4:53633850-53633869 | MS.gene073446:intron | 55.0% | |
| CAGATGTTACAGCTGGGTGG+AGG | - | chr2.4:53634414-53634433 | MS.gene073446:intron | 55.0% | |
| CAGGTCAGTCCAGTTGCAGT+TGG | - | chr2.4:53635528-53635547 | MS.gene073446:intron | 55.0% | |
| CGAGAACCACTGCGATGCTT+CGG | + | chr2.4:53635180-53635199 | None:intergenic | 55.0% | |
| GATTAGGTGTAGGGAAGGGG+TGG | - | chr2.4:53633836-53633855 | MS.gene073446:intron | 55.0% | |
| GCGGTCCCTCGACATAATCA+GGG | + | chr2.4:53635464-53635483 | None:intergenic | 55.0% | |
| TGCGGTCCCTCGACATAATC+AGG | + | chr2.4:53635465-53635484 | None:intergenic | 55.0% | |
| ! | GTGGGGCTGTTGATGAGTAG+TGG | + | chr2.4:53634651-53634670 | None:intergenic | 55.0% |
| !! | AGTGCTGAAAGCACCAGGGA+TGG | - | chr2.4:53635064-53635083 | MS.gene073446:intron | 55.0% |
| !! | CGAAGCATCGCAGTGGTTCT+CGG | - | chr2.4:53635178-53635197 | MS.gene073446:intron | 55.0% |
| !! | GGAATGGACTGGCTCTGCTT+GGG | - | chr2.4:53635145-53635164 | MS.gene073446:intron | 55.0% |
| !! | AAGGAGCCGAAGCATCGCAG+TGG | - | chr2.4:53635171-53635190 | MS.gene073446:intron | 60.0% |
| !! | ACTGGCTCTGCTTGGGACGA+AGG | - | chr2.4:53635152-53635171 | MS.gene073446:intron | 60.0% |
| !! | GGGAATGGACTGGCTCTGCT+TGG | - | chr2.4:53635144-53635163 | MS.gene073446:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 53632811 | 53636385 | 53632811 | ID=MS.gene073446 |
| chr2.4 | mRNA | 53632811 | 53636385 | 53632811 | ID=MS.gene073446.t1;Parent=MS.gene073446 |
| chr2.4 | exon | 53636256 | 53636385 | 53636256 | ID=MS.gene073446.t1.exon1;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53636256 | 53636385 | 53636256 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53636007 | 53636156 | 53636007 | ID=MS.gene073446.t1.exon2;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53636007 | 53636156 | 53636007 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53633954 | 53634130 | 53633954 | ID=MS.gene073446.t1.exon3;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53633954 | 53634130 | 53633954 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53633666 | 53633757 | 53633666 | ID=MS.gene073446.t1.exon4;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53633666 | 53633757 | 53633666 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53633519 | 53633583 | 53633519 | ID=MS.gene073446.t1.exon5;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53633519 | 53633583 | 53633519 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53633322 | 53633424 | 53633322 | ID=MS.gene073446.t1.exon6;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53633322 | 53633424 | 53633322 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53633022 | 53633132 | 53633022 | ID=MS.gene073446.t1.exon7;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53633022 | 53633132 | 53633022 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| chr2.4 | exon | 53632811 | 53632942 | 53632811 | ID=MS.gene073446.t1.exon8;Parent=MS.gene073446.t1 |
| chr2.4 | CDS | 53632811 | 53632942 | 53632811 | ID=cds.MS.gene073446.t1;Parent=MS.gene073446.t1 |
| Gene Sequence |
| Protein sequence |
