Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81687.t1 | Q07202.1 | 96.2 | 53 | 2 | 0 | 1 | 53 | 1 | 53 | 1.50E-15 | 93.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81687.t1 | Q07202 | 96.2 | 53 | 2 | 0 | 1 | 53 | 1 | 53 | 3.6e-18 | 93.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81687.t1 | G7K7D5 | 92.3 | 52 | 4 | 0 | 1 | 52 | 1 | 52 | 4.6e-14 | 87.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene81687 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene81687 | 0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene049260 | MS.gene81687 | 0.817931 | 2.55E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene81687 | 0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene81687 | 0.838676 | 2.50E-57 | -1.69E-46 |
| MS.gene050128 | MS.gene81687 | 0.841505 | 4.56E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene81687 | 0.826106 | 3.25E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene81687 | 0.80712 | 5.90E-50 | -1.69E-46 |
| MS.gene050406 | MS.gene81687 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene81687 | 0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene051535 | MS.gene81687 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene81687 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene81687 | 0.813906 | 2.02E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene81687 | 0.818507 | 1.89E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene81687 | 0.819334 | 1.23E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene81687 | 0.853622 | 2.12E-61 | -1.69E-46 |
| MS.gene053073 | MS.gene81687 | 0.862465 | 4.97E-64 | -1.69E-46 |
| MS.gene05316 | MS.gene81687 | 0.840808 | 6.96E-58 | -1.69E-46 |
| MS.gene053209 | MS.gene81687 | 0.816193 | 6.27E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene81687 | 0.849139 | 3.92E-60 | -1.69E-46 |
| MS.gene053559 | MS.gene81687 | 0.817995 | 2.47E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene81687 | 0.835649 | 1.48E-56 | -1.69E-46 |
| MS.gene053928 | MS.gene81687 | 0.806259 | 8.97E-50 | -1.69E-46 |
| MS.gene054327 | MS.gene81687 | 0.857395 | 1.68E-62 | -1.69E-46 |
| MS.gene054349 | MS.gene81687 | 0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene81687 | 0.834277 | 3.29E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene81687 | 0.821567 | 3.77E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene81687 | 0.81824 | 2.17E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene81687 | 0.815243 | 1.02E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene81687 | 0.817564 | 3.09E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene81687 | 0.838231 | 3.25E-57 | -1.69E-46 |
| MS.gene057396 | MS.gene81687 | 0.820213 | 7.73E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene81687 | 0.825772 | 3.91E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene81687 | 0.82196 | 3.06E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene81687 | 0.837052 | 6.53E-57 | -1.69E-46 |
| MS.gene057690 | MS.gene81687 | 0.820406 | 6.98E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene81687 | 0.819735 | 9.94E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene81687 | 0.833218 | 6.05E-56 | -1.69E-46 |
| MS.gene058142 | MS.gene81687 | 0.82794 | 1.19E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene81687 | 0.808847 | 2.53E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene81687 | 0.806952 | 6.41E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene81687 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene81687 | 0.817483 | 3.22E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene81687 | 0.803737 | 3.02E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene81687 | 0.832535 | 8.94E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene81687 | 0.816782 | 4.63E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene81687 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene059788 | MS.gene81687 | 0.803011 | 4.27E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene81687 | 0.890231 | 1.19E-73 | -1.69E-46 |
| MS.gene059899 | MS.gene81687 | 0.866919 | 2.00E-65 | -1.69E-46 |
| MS.gene06037 | MS.gene81687 | 0.805744 | 1.15E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene81687 | 0.83552 | 1.60E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene81687 | 0.801117 | 1.05E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene81687 | 0.830895 | 2.27E-55 | -1.69E-46 |
| MS.gene060943 | MS.gene81687 | 0.81614 | 6.45E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene81687 | 0.856899 | 2.35E-62 | -1.69E-46 |
| MS.gene061051 | MS.gene81687 | -0.816753 | 4.70E-52 | -1.69E-46 |
| MS.gene061112 | MS.gene81687 | 0.864701 | 1.01E-64 | -1.69E-46 |
| MS.gene061113 | MS.gene81687 | 0.833499 | 5.15E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene81687 | 0.83799 | 3.75E-57 | -1.69E-46 |
| MS.gene061265 | MS.gene81687 | 0.869447 | 3.08E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81687.t1 | MTR_5g084460 | 66.092 | 174 | 47 | 1 | 1 | 162 | 1 | 174 | 8.56e-22 | 89.4 |
| MS.gene81687.t1 | MTR_5g084570 | 82.000 | 50 | 8 | 1 | 1 | 49 | 1 | 50 | 1.26e-21 | 87.8 |
| MS.gene81687.t1 | MTR_5g084540 | 80.392 | 51 | 9 | 1 | 1 | 50 | 1 | 51 | 1.18e-20 | 84.7 |
| MS.gene81687.t1 | MTR_5g084530 | 52.308 | 195 | 44 | 3 | 1 | 179 | 1 | 162 | 2.31e-20 | 84.0 |
| MS.gene81687.t1 | MTR_5g084530 | 55.080 | 187 | 20 | 3 | 1 | 179 | 1 | 131 | 7.50e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 104 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTACCACCTCCATATT+TGG | 0.177321 | 5.1:+66490610 | None:intergenic |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5.1:-66491605 | None:intergenic |
| GAAGTAAACGATGGCAAATA+TGG | 0.307005 | 5.1:-66490962 | MS.gene81687:CDS |
| GAAGTAAATGATGCCAAATA+TGG | 0.357966 | 5.1:-66490623 | MS.gene81687:CDS |
| GGTGGTTACAATGGTGGTGG+GGG | 0.404226 | 5.1:-66490704 | MS.gene81687:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.415260 | 5.1:-66490707 | MS.gene81687:CDS |
| AGGTGGTTACAATGGTGGTG+GGG | 0.426416 | 5.1:-66490705 | MS.gene81687:CDS |
| CACGGTGGACACGGTGGCCA+TGG | 0.434236 | 5.1:-66490545 | MS.gene81687:CDS |
| CACGGTGGCCATGGTGGCCA+TGG | 0.435646 | 5.1:-66490536 | MS.gene81687:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.441060 | 5.1:-66490764 | MS.gene81687:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.1:-66490845 | MS.gene81687:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.1:-66490884 | MS.gene81687:CDS |
| GGTGGAGGTCACGGTGGTCA+CGG | 0.451802 | 5.1:-66490773 | MS.gene81687:CDS |
| CATGCTAAGCCTCTTGGCTA+TGG | 0.452537 | 5.1:-66491575 | MS.gene81687:CDS |
| GGTGGATACAATGGTGGAGG+TGG | 0.457644 | 5.1:-66490806 | MS.gene81687:CDS |
| GAGGTGGTTACAATGGTGGT+GGG | 0.460517 | 5.1:-66490706 | MS.gene81687:CDS |
| GGTCACGGTGGTCACGGTGG+AGG | 0.466433 | 5.1:-66490767 | MS.gene81687:CDS |
| CACGGTGGTCACGGTGGAGG+TGG | 0.469212 | 5.1:-66490722 | MS.gene81687:CDS |
| AACTTCCACTGATGCTAAGA+AGG | 0.471659 | 5.1:-66491512 | MS.gene81687:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.1:-66490791 | MS.gene81687:CDS |
| GGACACGGTGGTCACGGTGG+AGG | 0.486069 | 5.1:-66490725 | MS.gene81687:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.491121 | 5.1:-66490527 | MS.gene81687:CDS |
| AATCCTCATGCTAAGCCTCT+TGG | 0.494599 | 5.1:-66491581 | MS.gene81687:CDS |
| GGCTACAACCACGGTGGAGG+TGG | 0.494875 | 5.1:-66490569 | MS.gene81687:CDS |
| GGTGGAGGACACGGTGGTCA+CGG | 0.494972 | 5.1:-66490731 | MS.gene81687:CDS |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.1:+66490859 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.1:-66490788 | MS.gene81687:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.1:-66490827 | MS.gene81687:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.1:-66490866 | MS.gene81687:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.1:-66490782 | MS.gene81687:CDS |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5.1:-66491546 | MS.gene81687:CDS |
| GTATCCACCACCACCGTTGT+GGG | 0.511667 | 5.1:+66490820 | None:intergenic |
| GGTTATAACCACGGTGGTGG+TGG | 0.518027 | 5.1:-66490902 | MS.gene81687:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.519632 | 5.1:-66490824 | MS.gene81687:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.533367 | 5.1:-66490905 | MS.gene81687:CDS |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5.1:-66490554 | MS.gene81687:CDS |
| AGTGTTGTCCTCAGTTTGCA+CGG | 0.535241 | 5.1:+66490502 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.535349 | 5.1:-66490746 | MS.gene81687:CDS |
| AGTAATTACAACGATGGTAG+AGG | 0.535647 | 5.1:-66490593 | MS.gene81687:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.1:-66490863 | MS.gene81687:CDS |
| GGTAGAGGTGGCTACAACCA+CGG | 0.539916 | 5.1:-66490578 | MS.gene81687:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5.1:-66491545 | MS.gene81687:CDS |
| TGTATCCACCACCACCGTTG+TGG | 0.544285 | 5.1:+66490819 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.1:+66490858 | None:intergenic |
| TACAATGGTGGTGGAGGACA+CGG | 0.556001 | 5.1:-66490740 | MS.gene81687:CDS |
| CACGGTGGTGGTGGTTACAA+TGG | 0.558865 | 5.1:-66490893 | MS.gene81687:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.559565 | 5.1:-66490749 | MS.gene81687:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.1:-66490713 | MS.gene81687:CDS |
| CACGGTGGAGGTGGTTACAA+TGG | 0.563087 | 5.1:-66490755 | MS.gene81687:CDS |
| GGTGGTTATAACCACGGTGG+TGG | 0.571829 | 5.1:-66490938 | MS.gene81687:CDS |
| GGTGGACACGGTGGCCATGG+TGG | 0.573260 | 5.1:-66490542 | MS.gene81687:CDS |
| AACCACGGTGGAGGTGGTCA+CGG | 0.575658 | 5.1:-66490563 | MS.gene81687:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.1:-66490854 | MS.gene81687:CDS |
| AACGATGGCAAATATGGTGG+TGG | 0.582570 | 5.1:-66490956 | MS.gene81687:CDS |
| AATGATGCCAAATATGGAGG+TGG | 0.589889 | 5.1:-66490617 | MS.gene81687:CDS |
| AACGGTGGTGGTGGATACAA+TGG | 0.590390 | 5.1:-66490815 | MS.gene81687:CDS |
| CGTGACCACCATGGCCACCA+TGG | 0.597291 | 5.1:+66490528 | None:intergenic |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.1:-66490929 | MS.gene81687:CDS |
| GGTGGTGGATACAATGGTGG+AGG | 0.601928 | 5.1:-66490809 | MS.gene81687:CDS |
| CTCACCCTTCTTAGCATCAG+TGG | 0.602669 | 5.1:+66491507 | None:intergenic |
| GGTGGCTACAACCACGGTGG+AGG | 0.603384 | 5.1:-66490572 | MS.gene81687:CDS |
| GGTGGCCATGGTGGCCATGG+TGG | 0.607397 | 5.1:-66490533 | MS.gene81687:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.1:-66490926 | MS.gene81687:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.1:-66490848 | MS.gene81687:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.1:-66490887 | MS.gene81687:CDS |
| AATGGTGGAGGTGGTTACAA+TGG | 0.617120 | 5.1:-66490797 | MS.gene81687:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.1:-66490923 | MS.gene81687:CDS |
| ACTTCCACTGATGCTAAGAA+GGG | 0.629929 | 5.1:-66491511 | MS.gene81687:intron |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.1:-66490833 | MS.gene81687:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.1:-66490872 | MS.gene81687:CDS |
| ATCTGTTGCCGTGCAAACTG+AGG | 0.633170 | 5.1:-66490657 | MS.gene81687:CDS |
| GGAGGTCACGGTGGTCACGG+TGG | 0.640880 | 5.1:-66490770 | MS.gene81687:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.1:-66490830 | MS.gene81687:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.1:-66490869 | MS.gene81687:CDS |
| GCACGGCACCGTGACCACCA+TGG | 0.651087 | 5.1:+66490519 | None:intergenic |
| AATTACAACGATGGTAGAGG+TGG | 0.652701 | 5.1:-66490590 | MS.gene81687:CDS |
| GGAGGACACGGTGGTCACGG+TGG | 0.653298 | 5.1:-66490728 | MS.gene81687:CDS |
| TCACGGTGCCGTGCAAACTG+AGG | 0.653858 | 5.1:-66490510 | MS.gene81687:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.654568 | 5.1:-66490890 | MS.gene81687:CDS |
| TAGCCAAGAGGCTTAGCATG+AGG | 0.658082 | 5.1:+66491578 | None:intergenic |
| CACGGTGGAGGTGGTCACGG+TGG | 0.660681 | 5.1:-66490560 | MS.gene81687:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.666886 | 5.1:-66490794 | MS.gene81687:CDS |
| TATGGTGGTGGTTATAACCA+CGG | 0.669028 | 5.1:-66490944 | MS.gene81687:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.1:-66490851 | MS.gene81687:CDS |
| GGTGGTCACGGTGGACACGG+TGG | 0.673817 | 5.1:-66490551 | MS.gene81687:CDS |
| GGTGGTAGTAATTACAACGA+TGG | 0.680382 | 5.1:-66490599 | MS.gene81687:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.1:-66490710 | MS.gene81687:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.682012 | 5.1:-66490752 | MS.gene81687:CDS |
| AAGACTAATGAAGTAAACGA+TGG | 0.684650 | 5.1:-66490971 | MS.gene81687:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5.1:+66490561 | None:intergenic |
| GGTGGTGGTGGATACAATGG+TGG | 0.695355 | 5.1:-66490812 | MS.gene81687:CDS |
| GTAAATGATGCCAAATATGG+AGG | 0.695370 | 5.1:-66490620 | MS.gene81687:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5.1:+66491566 | None:intergenic |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.1:-66490779 | MS.gene81687:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.1:-66490911 | MS.gene81687:CDS |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.1:+66491531 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5.1:+66491543 | None:intergenic |
| AATGGTGGTGGAGGACACGG+TGG | 0.730218 | 5.1:-66490737 | MS.gene81687:CDS |
| CATTGTAACCACCACCACCG+TGG | 0.739269 | 5.1:+66490894 | None:intergenic |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.1:+66490927 | None:intergenic |
| GTAAACGATGGCAAATATGG+TGG | 0.744220 | 5.1:-66490959 | MS.gene81687:CDS |
| AGAGGTGGCTACAACCACGG+TGG | 0.781749 | 5.1:-66490575 | MS.gene81687:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5.1:-66490908 | MS.gene81687:CDS |
| GGTGGTGGTTATAACCACGG+TGG | 0.808173 | 5.1:-66490941 | MS.gene81687:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr5.1:66490915-66490896 | None:intergenic | 0.0% |
| !!! | AATCATTTTATATAACATTA+AGG | + | chr5.1:66490838-66490857 | None:intergenic | 10.0% |
| !!! | AAGGATAATTCTTTTATACT+TGG | - | chr5.1:66490682-66490701 | MS.gene81687:CDS | 20.0% |
| !!! | ACTAATTCTTTTCTATATGA+AGG | - | chr5.1:66490726-66490745 | MS.gene81687:CDS | 20.0% |
| !!! | ATTCTTTTCTACTTATATGA+AGG | - | chr5.1:66490663-66490682 | MS.gene81687:CDS | 20.0% |
| ! | AAATTATTCCAACATTACAC+CGG | - | chr5.1:66491003-66491022 | MS.gene81687:intron | 25.0% |
| ! | TATAGGAATATCATCAAATC+CGG | + | chr5.1:66491025-66491044 | None:intergenic | 25.0% |
| !!! | TTCAATAAGAAGTTTTTGAG+CGG | - | chr5.1:66490976-66490995 | MS.gene81687:CDS | 25.0% |
| AAGACTAATGAAGTAAACGA+TGG | - | chr5.1:66491120-66491139 | MS.gene81687:intron | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.1:66491468-66491487 | MS.gene81687:intron | 30.0% | |
| AGTAATTACAACGATGGTAG+AGG | - | chr5.1:66491498-66491517 | MS.gene81687:intron | 35.0% | |
| ATTACTACCACCTCCATATT+TGG | + | chr5.1:66491484-66491503 | None:intergenic | 35.0% | |
| GAAGTAAACGATGGCAAATA+TGG | - | chr5.1:66491129-66491148 | MS.gene81687:intron | 35.0% | |
| GTAAATGATGCCAAATATGG+AGG | - | chr5.1:66491471-66491490 | MS.gene81687:intron | 35.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.1:66490528-66490547 | None:intergenic | 40.0% | |
| AACTTCCACTGATGCTAAGA+AGG | - | chr5.1:66490579-66490598 | MS.gene81687:CDS | 40.0% | |
| AATGATGCCAAATATGGAGG+TGG | - | chr5.1:66491474-66491493 | MS.gene81687:intron | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | - | chr5.1:66491501-66491520 | MS.gene81687:intron | 40.0% | |
| ACTTCCACTGATGCTAAGAA+GGG | - | chr5.1:66490580-66490599 | MS.gene81687:CDS | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.1:66490563-66490582 | None:intergenic | 40.0% | |
| CATCAAATCCGGTGTAATGT+TGG | + | chr5.1:66491014-66491033 | None:intergenic | 40.0% | |
| GGTGGTAGTAATTACAACGA+TGG | - | chr5.1:66491492-66491511 | MS.gene81687:intron | 40.0% | |
| GTAAACGATGGCAAATATGG+TGG | - | chr5.1:66491132-66491151 | MS.gene81687:intron | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.1:66491180-66491199 | MS.gene81687:intron | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.1:66491445-66491464 | None:intergenic | 40.0% |
| !! | TATGGTGGTGGTTATAACCA+CGG | - | chr5.1:66491147-66491166 | MS.gene81687:intron | 40.0% |
| AACGATGGCAAATATGGTGG+TGG | - | chr5.1:66491135-66491154 | MS.gene81687:intron | 45.0% | |
| AATCCTCATGCTAAGCCTCT+TGG | - | chr5.1:66490510-66490529 | MS.gene81687:CDS | 45.0% | |
| AGTGTTGTCCTCAGTTTGCA+CGG | + | chr5.1:66491592-66491611 | None:intergenic | 45.0% | |
| ! | AATGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66491294-66491313 | MS.gene81687:intron | 45.0% |
| ATCTGTTGCCGTGCAAACTG+AGG | - | chr5.1:66491434-66491453 | MS.gene81687:intron | 50.0% | |
| CATGCTAAGCCTCTTGGCTA+TGG | - | chr5.1:66490516-66490535 | MS.gene81687:CDS | 50.0% | |
| CTCACCCTTCTTAGCATCAG+TGG | + | chr5.1:66490587-66490606 | None:intergenic | 50.0% | |
| GAGGTGGTTACAATGGTGGT+GGG | - | chr5.1:66491301-66491320 | MS.gene81687:intron | 50.0% | |
| TAGCCAAGAGGCTTAGCATG+AGG | + | chr5.1:66490516-66490535 | None:intergenic | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | - | chr5.1:66490546-66490565 | MS.gene81687:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | - | chr5.1:66490545-66490564 | MS.gene81687:CDS | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.1:66491162-66491181 | MS.gene81687:intron | 50.0% |
| ! | AGGTGGTTACAATGGTGGTG+GGG | - | chr5.1:66491302-66491321 | MS.gene81687:intron | 50.0% |
| !! | AACGGTGGTGGTGGATACAA+TGG | - | chr5.1:66491276-66491295 | MS.gene81687:intron | 50.0% |
| !! | AACGGTGGTGGTGGTTACAA+TGG | - | chr5.1:66491237-66491256 | MS.gene81687:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGACA+CGG | - | chr5.1:66491351-66491370 | MS.gene81687:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.1:66491309-66491328 | MS.gene81687:intron | 50.0% |
| CACCATTGTAACCACCACCG+TGG | + | chr5.1:66491167-66491186 | None:intergenic | 55.0% | |
| CACGGTGGAGGTGGTTACAA+TGG | - | chr5.1:66491336-66491355 | MS.gene81687:intron | 55.0% | |
| CATTGTAACCACCACCACCG+TGG | + | chr5.1:66491200-66491219 | None:intergenic | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.1:66491300-66491319 | MS.gene81687:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | - | chr5.1:66491186-66491205 | MS.gene81687:intron | 55.0% | |
| GGTAGAGGTGGCTACAACCA+CGG | - | chr5.1:66491513-66491532 | MS.gene81687:CDS | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.1:66491297-66491316 | MS.gene81687:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.1:66491183-66491202 | MS.gene81687:intron | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.1:66491153-66491172 | MS.gene81687:intron | 55.0% | |
| GTAACCACCACCACCGTTGT+GGG | + | chr5.1:66491235-66491254 | None:intergenic | 55.0% | |
| GTATCCACCACCACCGTTGT+GGG | + | chr5.1:66491274-66491293 | None:intergenic | 55.0% | |
| TGTAACCACCACCACCGTTG+TGG | + | chr5.1:66491236-66491255 | None:intergenic | 55.0% | |
| TGTATCCACCACCACCGTTG+TGG | + | chr5.1:66491275-66491294 | None:intergenic | 55.0% | |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.1:66491165-66491184 | MS.gene81687:intron | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5.1:66491285-66491304 | MS.gene81687:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.1:66491168-66491187 | MS.gene81687:intron | 55.0% |
| ! | GGTGGTGGTTATAACCACGG+TGG | - | chr5.1:66491150-66491169 | MS.gene81687:intron | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.1:66491171-66491190 | MS.gene81687:intron | 55.0% |
| ! | GGTTATAACCACGGTGGTGG+TGG | - | chr5.1:66491156-66491175 | MS.gene81687:intron | 55.0% |
| !! | CACGGTGGTGGTGGTTACAA+TGG | - | chr5.1:66491198-66491217 | MS.gene81687:intron | 55.0% |
| !! | GGTGGTGGATACAATGGTGG+AGG | - | chr5.1:66491282-66491301 | MS.gene81687:intron | 55.0% |
| !! | GGTGGTGGTGGATACAATGG+TGG | - | chr5.1:66491279-66491298 | MS.gene81687:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.1:66491201-66491220 | MS.gene81687:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.1:66491303-66491322 | MS.gene81687:intron | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+GGG | - | chr5.1:66491303-66491322 | MS.gene81687:intron | 55.0% |
| !! | TACAATGGTGGTGGGGGTCA+CGG | - | chr5.1:66491393-66491412 | MS.gene81687:intron | 55.0% |
| AACCACGGTGGAGGTGGTCA+CGG | - | chr5.1:66491528-66491547 | MS.gene81687:CDS | 60.0% | |
| AGAGGTGGCTACAACCACGG+TGG | - | chr5.1:66491516-66491535 | MS.gene81687:CDS | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | - | chr5.1:66491564-66491583 | MS.gene81687:CDS | 60.0% | |
| GGTGGAGGTGGTTCCCACAA+CGG | - | chr5.1:66491219-66491238 | MS.gene81687:intron | 60.0% | |
| ! | GTCCCTAGCGGACATCACTG+AGG | + | chr5.1:66490551-66490570 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGAGGACACGG+TGG | - | chr5.1:66491354-66491373 | MS.gene81687:intron | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.1:66491312-66491331 | MS.gene81687:intron | 60.0% |
| !! | TCACGGTGCCGTGCAAACTG+AGG | - | chr5.1:66491581-66491600 | MS.gene81687:CDS | 60.0% |
| CGTGACCACCATGGCCACCA+TGG | + | chr5.1:66491566-66491585 | None:intergenic | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | - | chr5.1:66491537-66491556 | MS.gene81687:CDS | 65.0% | |
| GGAGGTGGTTCCCACAACGG+TGG | - | chr5.1:66491222-66491241 | MS.gene81687:intron | 65.0% | |
| GGCTACAACCACGGTGGAGG+TGG | - | chr5.1:66491522-66491541 | MS.gene81687:CDS | 65.0% | |
| GGTGGAGGACACGGTGGTCA+CGG | - | chr5.1:66491360-66491379 | MS.gene81687:intron | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+CGG | - | chr5.1:66491318-66491337 | MS.gene81687:intron | 65.0% | |
| GGTGGCTACAACCACGGTGG+AGG | - | chr5.1:66491519-66491538 | MS.gene81687:CDS | 65.0% | |
| GGTGGTTCCCACAACGGTGG+TGG | - | chr5.1:66491225-66491244 | MS.gene81687:intron | 65.0% | |
| ! | GGTTCCCACAACGGTGGTGG+TGG | - | chr5.1:66491228-66491247 | MS.gene81687:intron | 65.0% |
| !! | AATGGTGGTGGGGGTCACGG+TGG | - | chr5.1:66491396-66491415 | MS.gene81687:intron | 65.0% |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.1:66491533-66491552 | None:intergenic | 70.0% | |
| CACGGTGGACACGGTGGCCA+TGG | - | chr5.1:66491546-66491565 | MS.gene81687:CDS | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.1:66491531-66491550 | MS.gene81687:CDS | 70.0% | |
| CACGGTGGCCATGGTGGCCA+TGG | - | chr5.1:66491555-66491574 | MS.gene81687:CDS | 70.0% | |
| CACGGTGGTCACGGTGGAGG+TGG | - | chr5.1:66491327-66491346 | MS.gene81687:intron | 70.0% | |
| GCACGGCACCGTGACCACCA+TGG | + | chr5.1:66491575-66491594 | None:intergenic | 70.0% | |
| GGACACGGTGGTCACGGTGG+AGG | - | chr5.1:66491366-66491385 | MS.gene81687:intron | 70.0% | |
| GGAGGACACGGTGGTCACGG+TGG | - | chr5.1:66491363-66491382 | MS.gene81687:intron | 70.0% | |
| GGAGGTCACGGTGGTCACGG+TGG | - | chr5.1:66491321-66491340 | MS.gene81687:intron | 70.0% | |
| GGGGGTCACGGTGGTCATGG+CGG | - | chr5.1:66491405-66491424 | MS.gene81687:intron | 70.0% | |
| GGTCACGGTGGTCACGGTGG+AGG | - | chr5.1:66491324-66491343 | MS.gene81687:intron | 70.0% | |
| GGTGGACACGGTGGCCATGG+TGG | - | chr5.1:66491549-66491568 | MS.gene81687:CDS | 70.0% | |
| GGTGGCCATGGTGGCCATGG+TGG | - | chr5.1:66491558-66491577 | MS.gene81687:CDS | 70.0% | |
| GGTGGGGGTCACGGTGGTCA+TGG | - | chr5.1:66491402-66491421 | MS.gene81687:intron | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | - | chr5.1:66491540-66491559 | MS.gene81687:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 66490493 | 66491620 | 66490493 | ID=MS.gene81687 |
| chr5.1 | mRNA | 66490493 | 66491620 | 66490493 | ID=MS.gene81687.t1;Parent=MS.gene81687 |
| chr5.1 | exon | 66491512 | 66491620 | 66491512 | ID=MS.gene81687.t1.exon1;Parent=MS.gene81687.t1 |
| chr5.1 | CDS | 66491512 | 66491620 | 66491512 | ID=cds.MS.gene81687.t1;Parent=MS.gene81687.t1 |
| chr5.1 | exon | 66490493 | 66491004 | 66490493 | ID=MS.gene81687.t1.exon2;Parent=MS.gene81687.t1 |
| chr5.1 | CDS | 66490493 | 66491004 | 66490493 | ID=cds.MS.gene81687.t1;Parent=MS.gene81687.t1 |
| Gene Sequence |
| Protein sequence |
