Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25913.t1 | XP_013461056.1 | 100 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 5.70E-44 | 186.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25913.t1 | B7FH72 | 100.0 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 4.1e-44 | 186.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene25913 | -0.828723 | 7.67E-55 | -1.69E-46 |
| MS.gene049150 | MS.gene25913 | -0.899491 | 1.88E-77 | -1.69E-46 |
| MS.gene049151 | MS.gene25913 | -0.865766 | 4.65E-65 | -1.69E-46 |
| MS.gene049153 | MS.gene25913 | -0.905525 | 3.91E-80 | -1.69E-46 |
| MS.gene049230 | MS.gene25913 | -0.805223 | 1.48E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene25913 | -0.851932 | 6.43E-61 | -1.69E-46 |
| MS.gene049297 | MS.gene25913 | -0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene25913 | -0.839846 | 1.24E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene25913 | -0.817553 | 3.11E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene25913 | -0.826084 | 3.29E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene25913 | -0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene25913 | -0.817779 | 2.76E-52 | -1.69E-46 |
| MS.gene049993 | MS.gene25913 | -0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene25913 | -0.802979 | 4.34E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene25913 | -0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene050168 | MS.gene25913 | -0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene25913 | -0.864799 | 9.38E-65 | -1.69E-46 |
| MS.gene050227 | MS.gene25913 | -0.860524 | 1.94E-63 | -1.69E-46 |
| MS.gene050228 | MS.gene25913 | -0.862819 | 3.87E-64 | -1.69E-46 |
| MS.gene050398 | MS.gene25913 | -0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene25913 | 0.841327 | 5.08E-58 | -1.69E-46 |
| MS.gene050442 | MS.gene25913 | -0.834334 | 3.18E-56 | -1.69E-46 |
| MS.gene050605 | MS.gene25913 | -0.850917 | 1.25E-60 | -1.69E-46 |
| MS.gene050623 | MS.gene25913 | 0.901225 | 3.32E-78 | -1.69E-46 |
| MS.gene050642 | MS.gene25913 | -0.887023 | 2.05E-72 | -1.69E-46 |
| MS.gene050680 | MS.gene25913 | -0.842654 | 2.27E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene25913 | -0.829953 | 3.86E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene25913 | -0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene25913 | -0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene050820 | MS.gene25913 | -0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene25913 | -0.827977 | 1.16E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene25913 | -0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene051370 | MS.gene25913 | -0.814703 | 1.35E-51 | -1.69E-46 |
| MS.gene051373 | MS.gene25913 | -0.835764 | 1.39E-56 | -1.69E-46 |
| MS.gene051535 | MS.gene25913 | -0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene051568 | MS.gene25913 | -0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene25913 | -0.893254 | 7.46E-75 | -1.69E-46 |
| MS.gene051983 | MS.gene25913 | -0.91357 | 5.28E-84 | -1.69E-46 |
| MS.gene052011 | MS.gene25913 | 0.831876 | 1.30E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene25913 | -0.862702 | 4.20E-64 | -1.69E-46 |
| MS.gene052176 | MS.gene25913 | -0.807035 | 6.15E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene25913 | -0.806501 | 7.98E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene25913 | -0.806668 | 7.36E-50 | -1.69E-46 |
| MS.gene052255 | MS.gene25913 | -0.823141 | 1.62E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene25913 | 0.807563 | 4.76E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene25913 | -0.82938 | 5.32E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene25913 | -0.836337 | 9.93E-57 | -1.69E-46 |
| MS.gene052389 | MS.gene25913 | -0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene25913 | -0.843226 | 1.60E-58 | -1.69E-46 |
| MS.gene053166 | MS.gene25913 | -0.822808 | 1.94E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene25913 | -0.850687 | 1.45E-60 | -1.69E-46 |
| MS.gene053176 | MS.gene25913 | -0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene25913 | -0.875401 | 3.17E-68 | -1.69E-46 |
| MS.gene053557 | MS.gene25913 | -0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene25913 | -0.833882 | 4.13E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene25913 | -0.849315 | 3.50E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene25913 | -0.868541 | 6.05E-66 | -1.69E-46 |
| MS.gene054184 | MS.gene25913 | -0.804494 | 2.10E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene25913 | 0.804598 | 2.00E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene25913 | -0.852122 | 5.68E-61 | -1.69E-46 |
| MS.gene054379 | MS.gene25913 | -0.828482 | 8.77E-55 | -1.69E-46 |
| MS.gene054405 | MS.gene25913 | -0.824439 | 8.07E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene25913 | -0.832883 | 7.33E-56 | -1.69E-46 |
| MS.gene054559 | MS.gene25913 | -0.815007 | 1.15E-51 | -1.69E-46 |
| MS.gene054713 | MS.gene25913 | -0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene25913 | -0.836977 | 6.82E-57 | -1.69E-46 |
| MS.gene054942 | MS.gene25913 | -0.817794 | 2.74E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene25913 | -0.805625 | 1.22E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene25913 | -0.853225 | 2.75E-61 | -1.69E-46 |
| MS.gene055356 | MS.gene25913 | -0.832596 | 8.64E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene25913 | -0.825967 | 3.51E-54 | -1.69E-46 |
| MS.gene055367 | MS.gene25913 | -0.81609 | 6.61E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene25913 | -0.854924 | 8.90E-62 | -1.69E-46 |
| MS.gene055604 | MS.gene25913 | -0.819317 | 1.24E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene25913 | -0.898029 | 7.91E-77 | -1.69E-46 |
| MS.gene05595 | MS.gene25913 | -0.836035 | 1.18E-56 | -1.69E-46 |
| MS.gene056087 | MS.gene25913 | -0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene25913 | -0.861932 | 7.25E-64 | -1.69E-46 |
| MS.gene056506 | MS.gene25913 | -0.846215 | 2.50E-59 | -1.69E-46 |
| MS.gene056723 | MS.gene25913 | -0.841346 | 5.02E-58 | -1.69E-46 |
| MS.gene056875 | MS.gene25913 | -0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene25913 | 0.844441 | 7.55E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene25913 | -0.910323 | 2.13E-82 | -1.69E-46 |
| MS.gene057156 | MS.gene25913 | 0.801265 | 9.77E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene25913 | -0.810657 | 1.03E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene25913 | -0.820391 | 7.03E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene25913 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene25913 | -0.831357 | 1.75E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene25913 | -0.826121 | 3.23E-54 | -1.69E-46 |
| MS.gene057639 | MS.gene25913 | -0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene057690 | MS.gene25913 | -0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene25913 | -0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene25913 | -0.820408 | 6.97E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene25913 | -0.82099 | 5.12E-53 | -1.69E-46 |
| MS.gene058139 | MS.gene25913 | -0.806224 | 9.13E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene25913 | -0.863084 | 3.20E-64 | -1.69E-46 |
| MS.gene058146 | MS.gene25913 | -0.84473 | 6.31E-59 | -1.69E-46 |
| MS.gene058399 | MS.gene25913 | -0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene058435 | MS.gene25913 | -0.850413 | 1.73E-60 | -1.69E-46 |
| MS.gene058595 | MS.gene25913 | -0.811849 | 5.70E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene25913 | -0.825529 | 4.46E-54 | -1.69E-46 |
| MS.gene058949 | MS.gene25913 | -0.806472 | 8.09E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene25913 | -0.817728 | 2.84E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene25913 | -0.836078 | 1.16E-56 | -1.69E-46 |
| MS.gene059161 | MS.gene25913 | -0.84685 | 1.68E-59 | -1.69E-46 |
| MS.gene059162 | MS.gene25913 | -0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene25913 | -0.856584 | 2.91E-62 | -1.69E-46 |
| MS.gene059285 | MS.gene25913 | -0.850533 | 1.60E-60 | -1.69E-46 |
| MS.gene059294 | MS.gene25913 | -0.804742 | 1.87E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene25913 | -0.833975 | 3.92E-56 | -1.69E-46 |
| MS.gene059609 | MS.gene25913 | -0.90542 | 4.38E-80 | -1.69E-46 |
| MS.gene05979 | MS.gene25913 | -0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene25913 | -0.867335 | 1.48E-65 | -1.69E-46 |
| MS.gene060011 | MS.gene25913 | -0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene060084 | MS.gene25913 | -0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene25913 | 0.829077 | 6.30E-55 | -1.69E-46 |
| MS.gene060495 | MS.gene25913 | -0.805223 | 1.48E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene25913 | -0.849107 | 4.00E-60 | -1.69E-46 |
| MS.gene060685 | MS.gene25913 | -0.841773 | 3.88E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene25913 | -0.874811 | 5.04E-68 | -1.69E-46 |
| MS.gene060803 | MS.gene25913 | -0.842587 | 2.36E-58 | -1.69E-46 |
| MS.gene060942 | MS.gene25913 | -0.814558 | 1.45E-51 | -1.69E-46 |
| MS.gene060943 | MS.gene25913 | -0.805109 | 1.56E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene25913 | -0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene25913 | -0.821441 | 4.03E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene25913 | -0.817515 | 3.17E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene25913 | 0.881451 | 2.37E-70 | -1.69E-46 |
| MS.gene061159 | MS.gene25913 | -0.855393 | 6.50E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25913.t1 | MTR_3g078590 | 100.000 | 90 | 0 | 0 | 1 | 90 | 1 | 90 | 2.56e-63 | 186 |
| MS.gene25913.t1 | MTR_3g085890 | 69.318 | 88 | 27 | 0 | 1 | 88 | 1 | 88 | 1.66e-43 | 136 |
| MS.gene25913.t1 | MTR_8g080060 | 69.318 | 88 | 27 | 0 | 1 | 88 | 1 | 88 | 4.04e-43 | 135 |
| MS.gene25913.t1 | MTR_7g016060 | 51.220 | 82 | 40 | 0 | 5 | 86 | 3 | 84 | 3.47e-29 | 100 |
| MS.gene25913.t1 | MTR_3g085890 | 63.934 | 61 | 22 | 0 | 27 | 87 | 1 | 61 | 1.80e-25 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25913.t1 | AT3G48140 | 74.118 | 85 | 22 | 0 | 4 | 88 | 3 | 87 | 1.26e-44 | 139 |
| MS.gene25913.t1 | AT3G29970 | 51.220 | 82 | 40 | 0 | 5 | 86 | 3 | 84 | 8.05e-30 | 101 |
| MS.gene25913.t1 | AT3G29970 | 47.059 | 68 | 36 | 0 | 18 | 85 | 1 | 68 | 2.24e-20 | 77.4 |
| MS.gene25913.t1 | AT3G29970 | 47.059 | 68 | 36 | 0 | 18 | 85 | 1 | 68 | 2.24e-20 | 77.4 |
Find 28 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATCAGTACCTGACTTC+AGG | 0.347160 | 3.2:+69345181 | None:intergenic |
| TACCCTCTGTTTGCTGCGGT+TGG | 0.396092 | 3.2:-69345256 | MS.gene25913:CDS |
| CTGCGGTTGGAGCTGCTGTT+GGG | 0.406881 | 3.2:-69345243 | MS.gene25913:CDS |
| GCTGCGGTTGGAGCTGCTGT+TGG | 0.426937 | 3.2:-69345244 | MS.gene25913:CDS |
| TTGAGGCCGGGCATAATCTC+TGG | 0.440854 | 3.2:+69344209 | None:intergenic |
| AACATCAGTACCTGACTTCA+GGG | 0.462667 | 3.2:+69345182 | None:intergenic |
| AACAAGCAGTCTCGAGCTGC+AGG | 0.464020 | 3.2:-69344305 | MS.gene25913:CDS |
| AGTGAAGAAGCTGTTGAGGC+CGG | 0.469984 | 3.2:+69344196 | None:intergenic |
| GTCTCGAGCTGCAGGAGTGT+TGG | 0.483795 | 3.2:-69344297 | MS.gene25913:CDS |
| GGGTCTGATCCAGCGATTGG+TGG | 0.513757 | 3.2:+69345370 | None:intergenic |
| AAATAACTTAGTTGCGACTT+GGG | 0.516597 | 3.2:+69344171 | None:intergenic |
| TTCTGTGTACTTCTCTCCCT+CGG | 0.519035 | 3.2:+69344265 | None:intergenic |
| CTCGGGTCTGATCCAGCGAT+TGG | 0.519677 | 3.2:+69345367 | None:intergenic |
| GTGAAGAAGCTGTTGAGGCC+GGG | 0.521542 | 3.2:+69344197 | None:intergenic |
| TATCCATGGCCACCAATCGC+TGG | 0.522115 | 3.2:-69345379 | None:intergenic |
| TCTGCATCAACCCTGAAGTC+AGG | 0.524860 | 3.2:-69345192 | MS.gene25913:intron |
| AAAATAACTTAGTTGCGACT+TGG | 0.526355 | 3.2:+69344170 | None:intergenic |
| GATGTTACGAACAAGTGAAA+AGG | 0.535731 | 3.2:+69345213 | None:intergenic |
| AGATCACCAGAGATTATGCC+CGG | 0.537901 | 3.2:-69344215 | MS.gene25913:CDS |
| GATCCAGCGATTGGTGGCCA+TGG | 0.584846 | 3.2:+69345376 | None:intergenic |
| CTCCAACCGCAGCAAACAGA+GGG | 0.612181 | 3.2:+69345254 | None:intergenic |
| GTGTTGGAGAACTTTGCCGA+GGG | 0.614956 | 3.2:-69344281 | MS.gene25913:CDS |
| GGTATACCCTCTGTTTGCTG+CGG | 0.632424 | 3.2:-69345260 | MS.gene25913:CDS |
| AGTGTTGGAGAACTTTGCCG+AGG | 0.642190 | 3.2:-69344282 | MS.gene25913:CDS |
| GGTCAGTGAAGAAGCTGTTG+AGG | 0.648101 | 3.2:+69344192 | None:intergenic |
| GCTCCAACCGCAGCAAACAG+AGG | 0.651727 | 3.2:+69345253 | None:intergenic |
| CAATCGCTGGATCAGACCCG+AGG | 0.698764 | 3.2:-69345366 | MS.gene25913:intron |
| AGTACACAGAACATTTGCTG+AGG | 0.706764 | 3.2:-69344253 | MS.gene25913:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATTAACAAAATTTAAT+GGG | - | chr3.2:69344609-69344628 | MS.gene25913:intron | 10.0% |
| !! | TAGATATTAACAAAATTTAA+TGG | - | chr3.2:69344608-69344627 | MS.gene25913:intron | 10.0% |
| !! | ATTAATCTCTAATATCAAAT+AGG | + | chr3.2:69344853-69344872 | None:intergenic | 15.0% |
| !! | TTAATCTCTAATATCAAATA+GGG | + | chr3.2:69344852-69344871 | None:intergenic | 15.0% |
| !!! | AGAGATTAATTTTTATTCAT+TGG | - | chr3.2:69344863-69344882 | MS.gene25913:intron | 15.0% |
| !!! | GAATATTCCTTTTTTATTTT+TGG | - | chr3.2:69344529-69344548 | MS.gene25913:intron | 15.0% |
| !! | AATTAAATAACTCATGTATC+TGG | - | chr3.2:69344683-69344702 | MS.gene25913:intron | 20.0% |
| !! | ACAAATTGTGAAAATTTAAG+CGG | + | chr3.2:69344585-69344604 | None:intergenic | 20.0% |
| !! | AGGAAAACCAAAAATAAAAA+AGG | + | chr3.2:69344539-69344558 | None:intergenic | 20.0% |
| !! | CTAATCGGATAATTAATTAA+TGG | + | chr3.2:69344498-69344517 | None:intergenic | 20.0% |
| !! | GATACATGAGTTATTTAATT+TGG | + | chr3.2:69344683-69344702 | None:intergenic | 20.0% |
| !! | TATACCTATAACAAAAAAGA+TGG | + | chr3.2:69344278-69344297 | None:intergenic | 20.0% |
| !!! | GATTAATTTTTATTCATTGG+AGG | - | chr3.2:69344866-69344885 | MS.gene25913:intron | 20.0% |
| !!! | TGATTAACTAAGTGATTTTT+AGG | - | chr3.2:69344718-69344737 | MS.gene25913:intron | 20.0% |
| ! | ATTCCATCATGTTTACTAAT+CGG | + | chr3.2:69344513-69344532 | None:intergenic | 25.0% |
| ! | TGAGATATAACTTAAAAGAG+TGG | - | chr3.2:69344942-69344961 | MS.gene25913:intron | 25.0% |
| ! | TTTGCTCAAATAACGTTTAA+TGG | - | chr3.2:69344805-69344824 | MS.gene25913:intron | 25.0% |
| !! | AATGAAAACTTTTATCTCAC+AGG | - | chr3.2:69345132-69345151 | MS.gene25913:intron | 25.0% |
| !! | ATGAAAACTTTTATCTCACA+GGG | - | chr3.2:69345133-69345152 | MS.gene25913:intron | 25.0% |
| !! | ATGTATGTTTGTTCTTTTGA+TGG | - | chr3.2:69345214-69345233 | MS.gene25913:CDS | 25.0% |
| !! | TGTATGTTTGTTCTTTTGAT+GGG | - | chr3.2:69345215-69345234 | MS.gene25913:CDS | 25.0% |
| !!! | AATGGTGATTTTAAAGTTGT+TGG | - | chr3.2:69344823-69344842 | MS.gene25913:intron | 25.0% |
| !!! | TGATTGATTTTTCTCTTCTT+TGG | - | chr3.2:69344424-69344443 | MS.gene25913:intron | 25.0% |
| !!! | TTCACCATCTTTTTTGTTAT+AGG | - | chr3.2:69344271-69344290 | MS.gene25913:CDS | 25.0% |
| !!! | TTGTTGTTTAATTTTTAGCC+AGG | - | chr3.2:69345165-69345184 | MS.gene25913:intron | 25.0% |
| !!! | TTTAATTTTTAGCCAGGATT+TGG | - | chr3.2:69345171-69345190 | MS.gene25913:intron | 25.0% |
| ACGAAATGCAAAGTAGTAAA+TGG | + | chr3.2:69344237-69344256 | None:intergenic | 30.0% | |
| CATCATATCATTTCTCAGAT+AGG | + | chr3.2:69344559-69344578 | None:intergenic | 30.0% | |
| TATCCGATTAGTAAACATGA+TGG | - | chr3.2:69344507-69344526 | MS.gene25913:intron | 30.0% | |
| !!! | TTGTTCTTTTGATGGGTTTA+GGG | - | chr3.2:69345222-69345241 | MS.gene25913:CDS | 30.0% |
| !!! | TTTGTTCTTTTGATGGGTTT+AGG | - | chr3.2:69345221-69345240 | MS.gene25913:CDS | 30.0% |
| AAATCCATGATATGTTTGCC+TGG | - | chr3.2:69345030-69345049 | MS.gene25913:intron | 35.0% | |
| AACTTAAAAGAGTGGCATCA+TGG | - | chr3.2:69344950-69344969 | MS.gene25913:intron | 35.0% | |
| ACTCATGTATCTGGACTAAA+TGG | - | chr3.2:69344692-69344711 | MS.gene25913:intron | 35.0% | |
| GACAAATCAGCTTCAATCAT+CGG | + | chr3.2:69344767-69344786 | None:intergenic | 35.0% | |
| GATGTTACGAACAAGTGAAA+AGG | + | chr3.2:69344342-69344361 | None:intergenic | 35.0% | |
| TGCATTTCGTAAGAGAGTTA+GGG | - | chr3.2:69344247-69344266 | MS.gene25913:CDS | 35.0% | |
| TGGCAAAATACAGATCGAAA+AGG | + | chr3.2:69344217-69344236 | None:intergenic | 35.0% | |
| TTGCATTTCGTAAGAGAGTT+AGG | - | chr3.2:69344246-69344265 | MS.gene25913:CDS | 35.0% | |
| ! | GAGTTTGACTTATCTCAGAT+CGG | - | chr3.2:69344446-69344465 | MS.gene25913:intron | 35.0% |
| AAACATCAGTACCTGACTTC+AGG | + | chr3.2:69344374-69344393 | None:intergenic | 40.0% | |
| AACATCAGTACCTGACTTCA+GGG | + | chr3.2:69344373-69344392 | None:intergenic | 40.0% | |
| AAGTCGCTTATAGAGAGAGT+AGG | + | chr3.2:69344651-69344670 | None:intergenic | 40.0% | |
| CTGGTTGAGTGAAATGAAGT+CGG | - | chr3.2:69345049-69345068 | MS.gene25913:intron | 40.0% | |
| TCAACCAGGCAAACATATCA+TGG | + | chr3.2:69345037-69345056 | None:intergenic | 40.0% | |
| TGGTGTTTGAAGGAGGATAA+TGG | - | chr3.2:69345191-69345210 | MS.gene25913:intron | 40.0% | |
| ! | AGTACACAGAACATTTGCTG+AGG | - | chr3.2:69345299-69345318 | MS.gene25913:intron | 40.0% |
| AGATCACCAGAGATTATGCC+CGG | - | chr3.2:69345337-69345356 | MS.gene25913:intron | 45.0% | |
| AGATCGAAAAGGACTCACCT+CGG | + | chr3.2:69344206-69344225 | None:intergenic | 45.0% | |
| CGACTTCATTTCACTCAACC+AGG | + | chr3.2:69345051-69345070 | None:intergenic | 45.0% | |
| CTCCTTCAAACACCAAATCC+TGG | + | chr3.2:69345186-69345205 | None:intergenic | 45.0% | |
| TTCTGTGTACTTCTCTCCCT+CGG | + | chr3.2:69345290-69345309 | None:intergenic | 45.0% | |
| !! | AGCCAGGATTTGGTGTTTGA+AGG | - | chr3.2:69345181-69345200 | MS.gene25913:intron | 45.0% |
| !! | CAGGATTTGGTGTTTGAAGG+AGG | - | chr3.2:69345184-69345203 | MS.gene25913:intron | 45.0% |
| AGTGAAGAAGCTGTTGAGGC+CGG | + | chr3.2:69345359-69345378 | None:intergenic | 50.0% | |
| GATCGAAAAGGACTCACCTC+GGG | + | chr3.2:69344205-69344224 | None:intergenic | 50.0% | |
| GGTCAGTGAAGAAGCTGTTG+AGG | + | chr3.2:69345363-69345382 | None:intergenic | 50.0% | |
| GTGTTGGAGAACTTTGCCGA+GGG | - | chr3.2:69345271-69345290 | MS.gene25913:intron | 50.0% | |
| TCTGCATCAACCCTGAAGTC+AGG | - | chr3.2:69344360-69344379 | MS.gene25913:intron | 50.0% | |
| ! | AGTGTTGGAGAACTTTGCCG+AGG | - | chr3.2:69345270-69345289 | MS.gene25913:intron | 50.0% |
| ! | GGTATACCCTCTGTTTGCTG+CGG | - | chr3.2:69344292-69344311 | MS.gene25913:CDS | 50.0% |
| AACAAGCAGTCTCGAGCTGC+AGG | - | chr3.2:69345247-69345266 | MS.gene25913:CDS | 55.0% | |
| CTCCAACCGCAGCAAACAGA+GGG | + | chr3.2:69344301-69344320 | None:intergenic | 55.0% | |
| GTGAAGAAGCTGTTGAGGCC+GGG | + | chr3.2:69345358-69345377 | None:intergenic | 55.0% | |
| TTGAGGCCGGGCATAATCTC+TGG | + | chr3.2:69345346-69345365 | None:intergenic | 55.0% | |
| ! | TACCCTCTGTTTGCTGCGGT+TGG | - | chr3.2:69344296-69344315 | MS.gene25913:CDS | 55.0% |
| CAATCGCTGGATCAGACCCG+AGG | - | chr3.2:69344186-69344205 | MS.gene25913:CDS | 60.0% | |
| CTCGGGTCTGATCCAGCGAT+TGG | + | chr3.2:69344188-69344207 | None:intergenic | 60.0% | |
| CTGCGGTTGGAGCTGCTGTT+GGG | - | chr3.2:69344309-69344328 | MS.gene25913:CDS | 60.0% | |
| GCTCCAACCGCAGCAAACAG+AGG | + | chr3.2:69344302-69344321 | None:intergenic | 60.0% | |
| GGGTCTGATCCAGCGATTGG+TGG | + | chr3.2:69344185-69344204 | None:intergenic | 60.0% | |
| ! | GTCTCGAGCTGCAGGAGTGT+TGG | - | chr3.2:69345255-69345274 | MS.gene25913:CDS | 60.0% |
| GCTGCGGTTGGAGCTGCTGT+TGG | - | chr3.2:69344308-69344327 | MS.gene25913:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69344178 | 69345396 | 69344178 | ID=MS.gene25913 |
| chr3.2 | mRNA | 69344178 | 69345396 | 69344178 | ID=MS.gene25913.t1;Parent=MS.gene25913 |
| chr3.2 | exon | 69345367 | 69345396 | 69345367 | ID=MS.gene25913.t1.exon1;Parent=MS.gene25913.t1 |
| chr3.2 | CDS | 69345367 | 69345396 | 69345367 | ID=cds.MS.gene25913.t1;Parent=MS.gene25913.t1 |
| chr3.2 | exon | 69345193 | 69345281 | 69345193 | ID=MS.gene25913.t1.exon2;Parent=MS.gene25913.t1 |
| chr3.2 | CDS | 69345193 | 69345281 | 69345193 | ID=cds.MS.gene25913.t1;Parent=MS.gene25913.t1 |
| chr3.2 | exon | 69344178 | 69344331 | 69344178 | ID=MS.gene25913.t1.exon3;Parent=MS.gene25913.t1 |
| chr3.2 | CDS | 69344178 | 69344331 | 69344178 | ID=cds.MS.gene25913.t1;Parent=MS.gene25913.t1 |
| Gene Sequence |
| Protein sequence |
