Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069682.t1 | XP_013452780.1 | 98.6 | 499 | 7 | 0 | 1 | 499 | 1 | 499 | 8.10E-289 | 1002.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069682.t1 | P54767 | 76.8 | 505 | 100 | 2 | 6 | 499 | 4 | 502 | 2.0e-232 | 806.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069682.t1 | A0A072UCM6 | 98.6 | 499 | 7 | 0 | 1 | 499 | 1 | 499 | 5.8e-289 | 1002.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene069682 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene049150 | MS.gene069682 | 0.861206 | 1.21E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene069682 | 0.839031 | 2.02E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene069682 | 0.854836 | 9.44E-62 | -1.69E-46 |
| MS.gene049260 | MS.gene069682 | 0.866398 | 2.94E-65 | -1.69E-46 |
| MS.gene049346 | MS.gene069682 | 0.835536 | 1.59E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene069682 | 0.867605 | 1.21E-65 | -1.69E-46 |
| MS.gene049910 | MS.gene069682 | 0.827825 | 1.26E-54 | -1.69E-46 |
| MS.gene049915 | MS.gene069682 | 0.805327 | 1.41E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene069682 | 0.846658 | 1.89E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene069682 | 0.874684 | 5.57E-68 | -1.69E-46 |
| MS.gene050397 | MS.gene069682 | 0.803925 | 2.76E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene069682 | 0.833291 | 5.80E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene069682 | 0.814422 | 1.55E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene069682 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene069682 | 0.803403 | 3.55E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene069682 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene050900 | MS.gene069682 | 0.802526 | 5.38E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene069682 | 0.817991 | 2.47E-52 | -1.69E-46 |
| MS.gene05119 | MS.gene069682 | -0.828333 | 9.53E-55 | -1.69E-46 |
| MS.gene051360 | MS.gene069682 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene069682 | 0.829216 | 5.83E-55 | -1.69E-46 |
| MS.gene051663 | MS.gene069682 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene069682 | 0.860918 | 1.48E-63 | -1.69E-46 |
| MS.gene051983 | MS.gene069682 | 0.830483 | 2.86E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene069682 | -0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene069682 | 0.831977 | 1.23E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene069682 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene069682 | 0.836374 | 9.72E-57 | -1.69E-46 |
| MS.gene052188 | MS.gene069682 | 0.837155 | 6.14E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene069682 | 0.813558 | 2.41E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene069682 | 0.83728 | 5.71E-57 | -1.69E-46 |
| MS.gene052255 | MS.gene069682 | 0.816818 | 4.55E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene069682 | 0.806625 | 7.51E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene069682 | 0.859475 | 4.03E-63 | -1.69E-46 |
| MS.gene052485 | MS.gene069682 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene052917 | MS.gene069682 | -0.810649 | 1.04E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene069682 | 0.83341 | 5.42E-56 | -1.69E-46 |
| MS.gene05316 | MS.gene069682 | 0.836047 | 1.18E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene069682 | 0.845181 | 4.77E-59 | -1.69E-46 |
| MS.gene053494 | MS.gene069682 | 0.817056 | 4.02E-52 | -1.69E-46 |
| MS.gene053555 | MS.gene069682 | 0.824024 | 1.01E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene069682 | 0.841776 | 3.87E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene069682 | 0.878314 | 3.10E-69 | -1.69E-46 |
| MS.gene053928 | MS.gene069682 | 0.825671 | 4.13E-54 | -1.69E-46 |
| MS.gene054010 | MS.gene069682 | 0.811839 | 5.73E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene069682 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene069682 | 0.807938 | 3.96E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene069682 | 0.804954 | 1.69E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene069682 | 0.816433 | 5.54E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene069682 | 0.807743 | 4.36E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene069682 | 0.847482 | 1.12E-59 | -1.69E-46 |
| MS.gene054542 | MS.gene069682 | 0.811278 | 7.59E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene069682 | 0.834374 | 3.11E-56 | -1.69E-46 |
| MS.gene054983 | MS.gene069682 | 0.810723 | 1.00E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene069682 | 0.841242 | 5.35E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene069682 | 0.848804 | 4.85E-60 | -1.69E-46 |
| MS.gene055358 | MS.gene069682 | 0.807261 | 5.51E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene069682 | 0.822469 | 2.33E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene069682 | 0.835521 | 1.60E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene069682 | 0.850553 | 1.58E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene069682 | 0.845658 | 3.54E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene069682 | 0.850556 | 1.57E-60 | -1.69E-46 |
| MS.gene055666 | MS.gene069682 | 0.848348 | 6.49E-60 | -1.69E-46 |
| MS.gene055712 | MS.gene069682 | 0.811728 | 6.05E-51 | -1.69E-46 |
| MS.gene055859 | MS.gene069682 | 0.83006 | 3.63E-55 | -1.69E-46 |
| MS.gene05594 | MS.gene069682 | 0.807333 | 5.32E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene069682 | 0.858751 | 6.65E-63 | -1.69E-46 |
| MS.gene056447 | MS.gene069682 | 0.807282 | 5.46E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene069682 | 0.829422 | 5.19E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene069682 | 0.814928 | 1.20E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene069682 | 0.826935 | 2.06E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene069682 | 0.81402 | 1.91E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene069682 | 0.816825 | 4.53E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene069682 | 0.864119 | 1.53E-64 | -1.69E-46 |
| MS.gene057121 | MS.gene069682 | 0.821951 | 3.07E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene069682 | 0.820476 | 6.72E-53 | -1.69E-46 |
| MS.gene057439 | MS.gene069682 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene069682 | 0.86476 | 9.64E-65 | -1.69E-46 |
| MS.gene057449 | MS.gene069682 | 0.844897 | 5.69E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene069682 | 0.867209 | 1.62E-65 | -1.69E-46 |
| MS.gene057469 | MS.gene069682 | 0.856068 | 4.13E-62 | -1.69E-46 |
| MS.gene057690 | MS.gene069682 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene069682 | 0.820722 | 5.90E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene069682 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene069682 | 0.812455 | 4.20E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene069682 | 0.86763 | 1.19E-65 | -1.69E-46 |
| MS.gene058082 | MS.gene069682 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene069682 | 0.854262 | 1.38E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene069682 | 0.858128 | 1.02E-62 | -1.69E-46 |
| MS.gene058276 | MS.gene069682 | 0.807819 | 4.19E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene069682 | 0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene069682 | 0.827585 | 1.44E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene069682 | 0.81499 | 1.16E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene069682 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene069682 | 0.820713 | 5.93E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene069682 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene069682 | 0.8079 | 4.03E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene069682 | 0.805701 | 1.18E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene069682 | 0.81632 | 5.88E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene069682 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene069682 | 0.872096 | 4.13E-67 | -1.69E-46 |
| MS.gene059128 | MS.gene069682 | 0.805226 | 1.48E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene069682 | 0.848378 | 6.37E-60 | -1.69E-46 |
| MS.gene059294 | MS.gene069682 | 0.811231 | 7.76E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene069682 | 0.815006 | 1.15E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene069682 | 0.838402 | 2.94E-57 | -1.69E-46 |
| MS.gene059518 | MS.gene069682 | 0.830429 | 2.95E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene069682 | 0.83657 | 8.66E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene069682 | 0.82899 | 6.61E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene069682 | 0.828233 | 1.01E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene069682 | 0.84059 | 7.93E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene069682 | 0.839269 | 1.75E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene069682 | 0.848253 | 6.89E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene069682 | 0.857448 | 1.62E-62 | -1.69E-46 |
| MS.gene059899 | MS.gene069682 | 0.82573 | 4.00E-54 | -1.69E-46 |
| MS.gene059974 | MS.gene069682 | 0.812412 | 4.30E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene069682 | 0.849227 | 3.70E-60 | -1.69E-46 |
| MS.gene060407 | MS.gene069682 | 0.839974 | 1.15E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene069682 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene069682 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene060569 | MS.gene069682 | 0.808889 | 2.48E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene069682 | 0.88463 | 1.63E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene069682 | -0.841482 | 4.63E-58 | -1.69E-46 |
| MS.gene061112 | MS.gene069682 | 0.838604 | 2.60E-57 | -1.69E-46 |
| MS.gene061113 | MS.gene069682 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene069682 | -0.819986 | 8.71E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene069682 | 0.801985 | 6.95E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene069682 | 0.854079 | 1.56E-61 | -1.69E-46 |
| MS.gene061265 | MS.gene069682 | 0.848027 | 7.96E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069682.t1 | MTR_6g075210 | 98.597 | 499 | 7 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1024 |
| MS.gene069682.t1 | MTR_3g064740 | 74.364 | 511 | 116 | 4 | 1 | 499 | 1 | 508 | 0.0 | 783 |
| MS.gene069682.t1 | MTR_6g075210 | 99.180 | 366 | 3 | 0 | 134 | 499 | 1 | 366 | 0.0 | 753 |
| MS.gene069682.t1 | MTR_5g077090 | 72.358 | 492 | 128 | 2 | 16 | 499 | 4 | 495 | 0.0 | 751 |
| MS.gene069682.t1 | MTR_6g075210 | 99.349 | 307 | 2 | 0 | 193 | 499 | 1 | 307 | 0.0 | 630 |
| MS.gene069682.t1 | MTR_3g064740 | 74.937 | 399 | 94 | 1 | 99 | 491 | 1 | 399 | 0.0 | 624 |
| MS.gene069682.t1 | MTR_7g022310 | 25.895 | 363 | 239 | 11 | 84 | 436 | 157 | 499 | 8.50e-20 | 92.8 |
| MS.gene069682.t1 | MTR_5g075840 | 45.977 | 87 | 37 | 1 | 367 | 443 | 30 | 116 | 9.25e-15 | 72.0 |
| MS.gene069682.t1 | MTR_5g075820 | 76.923 | 39 | 9 | 0 | 255 | 293 | 15 | 53 | 3.42e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069682.t1 | AT2G02010 | 77.778 | 495 | 101 | 2 | 1 | 495 | 1 | 486 | 0.0 | 811 |
| MS.gene069682.t1 | AT2G02010 | 77.778 | 495 | 101 | 2 | 1 | 495 | 53 | 538 | 0.0 | 811 |
| MS.gene069682.t1 | AT3G17760 | 78.323 | 489 | 99 | 3 | 14 | 499 | 10 | 494 | 0.0 | 795 |
| MS.gene069682.t1 | AT3G17760 | 78.323 | 489 | 99 | 3 | 14 | 499 | 10 | 494 | 0.0 | 795 |
| MS.gene069682.t1 | AT5G17330 | 76.031 | 509 | 105 | 4 | 1 | 499 | 1 | 502 | 0.0 | 793 |
| MS.gene069682.t1 | AT2G02000 | 74.899 | 494 | 115 | 2 | 1 | 494 | 1 | 485 | 0.0 | 783 |
| MS.gene069682.t1 | AT1G65960 | 76.447 | 501 | 109 | 4 | 1 | 499 | 1 | 494 | 0.0 | 783 |
| MS.gene069682.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene069682.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene069682.t1 | AT1G65960 | 76.359 | 368 | 82 | 3 | 134 | 499 | 1 | 365 | 0.0 | 573 |
| MS.gene069682.t1 | AT3G17720 | 74.074 | 162 | 39 | 1 | 94 | 255 | 27 | 185 | 2.46e-82 | 254 |
| MS.gene069682.t1 | AT1G27980 | 24.586 | 362 | 241 | 11 | 84 | 434 | 160 | 500 | 4.64e-17 | 84.3 |
Find 107 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTGTGTTGCAGCCATTT+TGG | 0.165886 | 6.1:-66965240 | MS.gene069682:CDS |
| CTGGTATTGGTTGGGTTGTT+TGG | 0.223066 | 6.1:-66965001 | MS.gene069682:CDS |
| TTCTCTACCCTGATCTTCTA+TGG | 0.227683 | 6.1:-66965088 | MS.gene069682:CDS |
| ATCTGATATGCTGCATCTTT+TGG | 0.270173 | 6.1:+66967687 | None:intergenic |
| CTCAATACTACCAATTTATA+CGG | 0.284916 | 6.1:-66964633 | MS.gene069682:CDS |
| AACCGCAACATGAGCATCTT+TGG | 0.297910 | 6.1:+66964085 | None:intergenic |
| TCCTGTCACTACTGAGCTTC+AGG | 0.325572 | 6.1:-66967529 | MS.gene069682:intron |
| CCGTCCTCCGAGTGGTGATT+AGG | 0.325686 | 6.1:-66964199 | MS.gene069682:CDS |
| CGAAGCCTAGCCGTATAAAT+TGG | 0.327648 | 6.1:+66964623 | None:intergenic |
| TAACAAGAACTATGTTGATA+TGG | 0.353769 | 6.1:-66967559 | MS.gene069682:CDS |
| TTCTAGATACGTGCGTGAAC+AGG | 0.356943 | 6.1:-66967842 | MS.gene069682:CDS |
| AGAGTCAAGCTGAGATTCTT+AGG | 0.358334 | 6.1:-66964019 | MS.gene069682:CDS |
| CGGAAATCCCATAGAAGATC+AGG | 0.359620 | 6.1:+66965080 | None:intergenic |
| GGTCTTGTTTACCCTGGTAT+TGG | 0.363471 | 6.1:-66965014 | MS.gene069682:CDS |
| CTCGCAGCATCCACATGAAT+TGG | 0.372368 | 6.1:+66965131 | None:intergenic |
| GAGGCATAAAGCTGACTTGC+CGG | 0.372412 | 6.1:-66964979 | MS.gene069682:CDS |
| TATCAACATAGTTCTTGTTA+AGG | 0.372982 | 6.1:+66967562 | None:intergenic |
| AGTCAGCGTTGAACCCAAAA+TGG | 0.376738 | 6.1:+66965226 | None:intergenic |
| AATGATGAGTTGATGTTAGA+TGG | 0.378531 | 6.1:-66967660 | MS.gene069682:CDS |
| ATCAACATAGTTCTTGTTAA+GGG | 0.379347 | 6.1:+66967563 | None:intergenic |
| CATCTATTCAATGCTCCTAT+TGG | 0.380720 | 6.1:-66966370 | MS.gene069682:CDS |
| TGGCTTCATTTGTTACTACT+TGG | 0.383718 | 6.1:-66967620 | MS.gene069682:CDS |
| CGTCCTCCGAGTGGTGATTA+GGG | 0.385244 | 6.1:-66964198 | MS.gene069682:CDS |
| ACCATTTCAACAGCTTTCAA+TGG | 0.408300 | 6.1:+66965275 | None:intergenic |
| AATATGCTACACAGGTTTGT+TGG | 0.409355 | 6.1:-66965370 | MS.gene069682:intron |
| ATATGCTACACAGGTTTGTT+GGG | 0.411704 | 6.1:-66965369 | MS.gene069682:intron |
| TTGTTTACCCTGGTATTGGT+TGG | 0.425703 | 6.1:-66965010 | MS.gene069682:CDS |
| AACGCTGACTGGAGAGTTTG+AGG | 0.427297 | 6.1:-66965213 | MS.gene069682:CDS |
| TGTTTACCCTGGTATTGGTT+GGG | 0.431991 | 6.1:-66965009 | MS.gene069682:CDS |
| GATAAGCCTAACATAGTTAC+CGG | 0.434270 | 6.1:-66966229 | MS.gene069682:CDS |
| ACTATGTTAGGCTTATCATA+TGG | 0.434829 | 6.1:+66966235 | None:intergenic |
| TTAGCTCCGGTAACTATGTT+AGG | 0.434904 | 6.1:+66966223 | None:intergenic |
| GAGAAATTCAATGTGAAAGT+TGG | 0.439670 | 6.1:+66964915 | None:intergenic |
| AAGGAAGGAATTGAGAAAAC+AGG | 0.440850 | 6.1:-66964380 | MS.gene069682:CDS |
| AAGCTGAGATTCTTAGGTAC+TGG | 0.444819 | 6.1:-66964013 | MS.gene069682:CDS |
| TTCATTTGTTACTACTTGGA+TGG | 0.447228 | 6.1:-66967616 | MS.gene069682:CDS |
| GTACTTTGAGGTTGAGCTAA+AGG | 0.449977 | 6.1:-66965333 | MS.gene069682:CDS |
| TGGAAAACCAAGGCTTAACT+TGG | 0.451331 | 6.1:-66967640 | MS.gene069682:CDS |
| TACTGGAAGAAGCTTGTTGA+TGG | 0.452812 | 6.1:-66963996 | MS.gene069682:CDS |
| GCAGTTTCCTCTGCACCAAT+AGG | 0.455267 | 6.1:+66966355 | None:intergenic |
| GGAGGATTTCAGCTGTAGCT+TGG | 0.457484 | 6.1:-66964177 | MS.gene069682:CDS |
| TCTCTACCCTGATCTTCTAT+GGG | 0.463816 | 6.1:-66965087 | MS.gene069682:CDS |
| ATGGGATTTCCGTTTGCCAT+TGG | 0.465556 | 6.1:-66965069 | MS.gene069682:CDS |
| CTTGTTGATGGCAAGAGAGT+TGG | 0.470062 | 6.1:-66963984 | MS.gene069682:CDS |
| GTATTGGTTGGGTTGTTTGG+AGG | 0.473665 | 6.1:-66964998 | MS.gene069682:CDS |
| AATGAAGCCAAGTTAAGCCT+TGG | 0.475959 | 6.1:+66967633 | None:intergenic |
| AAAATTTGCCAGGTACTTTG+AGG | 0.476874 | 6.1:-66965345 | MS.gene069682:CDS |
| AAAATACGGATGGATAGTTC+CGG | 0.478907 | 6.1:-66964255 | MS.gene069682:CDS |
| GCAGTAGGTGTTGGAACTGT+AGG | 0.480901 | 6.1:-66966334 | MS.gene069682:CDS |
| TCTTTGGAATTGATAGAACT+TGG | 0.481455 | 6.1:+66964101 | None:intergenic |
| GCAGACCATCTGAGAAAATA+CGG | 0.484458 | 6.1:-66964269 | MS.gene069682:CDS |
| CAAGAGAGTTGGAGCATGCT+AGG | 0.485182 | 6.1:-66963973 | None:intergenic |
| CAAACAACCCAACCAATACC+AGG | 0.491052 | 6.1:+66965002 | None:intergenic |
| TCCATTGAAAGCTGTTGAAA+TGG | 0.494508 | 6.1:-66965276 | MS.gene069682:CDS |
| ATTTATACGGCTAGGCTTCG+AGG | 0.499173 | 6.1:-66964620 | MS.gene069682:intron |
| AAAATTGTCTCCAAGGACAT+AGG | 0.500052 | 6.1:-66964350 | MS.gene069682:CDS |
| TGCGTCTGCGGGCATTGTGT+AGG | 0.507441 | 6.1:+66964232 | None:intergenic |
| AAGGTTTAAAATTGTCTCCA+AGG | 0.518110 | 6.1:-66964357 | MS.gene069682:CDS |
| AAGTGGCACACCTATGTCCT+TGG | 0.530991 | 6.1:+66964340 | None:intergenic |
| AAATGTGATGGAAAATTGCT+TGG | 0.532973 | 6.1:-66964420 | MS.gene069682:CDS |
| TGAGTGTGATAAGCTTATCA+TGG | 0.535116 | 6.1:-66967589 | MS.gene069682:CDS |
| AGAAGATCAGGGTAGAGAAA+CGG | 0.536404 | 6.1:+66965092 | None:intergenic |
| GAGGAAACTGCAGTAGGTGT+TGG | 0.536508 | 6.1:-66966343 | MS.gene069682:CDS |
| ATCAACCTGCACATTAGCTC+CGG | 0.537707 | 6.1:+66966210 | None:intergenic |
| CAGTAGGTGTTGGAACTGTA+GGG | 0.543728 | 6.1:-66966333 | MS.gene069682:CDS |
| ACTAAGAAGAACAAGGAGAC+AGG | 0.550901 | 6.1:-66965164 | MS.gene069682:CDS |
| ACCTGAAGCTCAGTAGTGAC+AGG | 0.552304 | 6.1:+66967528 | None:intergenic |
| AATGTTAGCGGTCACAAGTA+CGG | 0.552630 | 6.1:-66965035 | MS.gene069682:CDS |
| CACAGAGGATTACTATGTGA+TGG | 0.560082 | 6.1:-66965300 | MS.gene069682:CDS |
| TAGCTCAACCTCAAAGTACC+TGG | 0.560216 | 6.1:+66965337 | None:intergenic |
| AGAAGAACAAGGAGACAGGA+TGG | 0.561254 | 6.1:-66965160 | MS.gene069682:CDS |
| GTGAAAAGTATCAATGTTAG+CGG | 0.565895 | 6.1:-66965047 | MS.gene069682:CDS |
| TCTGCGGGCATTGTGTAGGC+CGG | 0.569917 | 6.1:+66964236 | None:intergenic |
| TTCACATTGAATTTCTCCAA+AGG | 0.571801 | 6.1:-66964909 | MS.gene069682:intron |
| TCAGAGGCAATAATGCTAGC+TGG | 0.572476 | 6.1:-66966307 | MS.gene069682:CDS |
| CAATGCTCCTATTGGTGCAG+AGG | 0.575155 | 6.1:-66966362 | MS.gene069682:CDS |
| TTCCAAAGATGCTCATGTTG+CGG | 0.577794 | 6.1:-66964087 | MS.gene069682:CDS |
| AACACAAGAATTCTGAAGGA+AGG | 0.578827 | 6.1:-66964395 | MS.gene069682:CDS |
| CAAAATGGCTGCAACACAGA+TGG | 0.582491 | 6.1:+66965241 | None:intergenic |
| GAAGAACAAGGAGACAGGAT+GGG | 0.586417 | 6.1:-66965159 | MS.gene069682:CDS |
| GGCAAACACAAGAATTCTGA+AGG | 0.590261 | 6.1:-66964399 | MS.gene069682:CDS |
| CCTAATCACCACTCGGAGGA+CGG | 0.599220 | 6.1:+66964199 | None:intergenic |
| ACCATCTGAGAAAATACGGA+TGG | 0.603176 | 6.1:-66964265 | MS.gene069682:CDS |
| ATGATAAGCTTATCACACTC+AGG | 0.609818 | 6.1:+66967591 | None:intergenic |
| TCAACTGTCACACATCCAGA+TGG | 0.610258 | 6.1:-66967895 | MS.gene069682:CDS |
| TTCAGAGAGAATGCAACAAG+TGG | 0.617273 | 6.1:+66964323 | None:intergenic |
| AAGGAATTGAGAAAACAGGA+AGG | 0.618569 | 6.1:-66964376 | MS.gene069682:CDS |
| TACTACCAATTTATACGGCT+AGG | 0.622133 | 6.1:-66964628 | MS.gene069682:CDS |
| GGAAATCCCATAGAAGATCA+GGG | 0.625993 | 6.1:+66965081 | None:intergenic |
| AGTTACCGGAGCTAATGTGC+AGG | 0.628397 | 6.1:-66966215 | MS.gene069682:intron |
| CATGTGGATGCTGCGAGCGG+TGG | 0.629625 | 6.1:-66965125 | MS.gene069682:CDS |
| ATGGGATACTCCAATTCATG+TGG | 0.632127 | 6.1:-66965141 | MS.gene069682:CDS |
| AAGTACGGTCTTGTTTACCC+TGG | 0.636562 | 6.1:-66965020 | MS.gene069682:CDS |
| GGTGCAGAGGAAACTGCAGT+AGG | 0.659345 | 6.1:-66966349 | MS.gene069682:CDS |
| AATCCTCCCTAATCACCACT+CGG | 0.661532 | 6.1:+66964192 | None:intergenic |
| CCTCCGAGTGGTGATTAGGG+AGG | 0.671048 | 6.1:-66964195 | MS.gene069682:CDS |
| TGGAACTGTAGGGTCATCAG+AGG | 0.671933 | 6.1:-66966323 | MS.gene069682:CDS |
| CAGACAAAGAGAAAATCAGA+AGG | 0.674198 | 6.1:-66966262 | MS.gene069682:CDS |
| GCTTCTTACTAAGAAGAACA+AGG | 0.681561 | 6.1:-66965171 | MS.gene069682:CDS |
| GTGCTATTATATTCACACAC+CGG | 0.687463 | 6.1:+66966392 | None:intergenic |
| ACACATCGCCGTCCTCCGAG+TGG | 0.691243 | 6.1:-66964207 | MS.gene069682:CDS |
| TGATGTTAGATGGAAAACCA+AGG | 0.691803 | 6.1:-66967650 | MS.gene069682:CDS |
| ATTCATGTGGATGCTGCGAG+CGG | 0.696037 | 6.1:-66965128 | MS.gene069682:CDS |
| AAACAACCCAACCAATACCA+GGG | 0.700278 | 6.1:+66965003 | None:intergenic |
| TATCGCGAGTGAGACAAGTG+AGG | 0.713496 | 6.1:-66964063 | MS.gene069682:CDS |
| CCTCCCTAATCACCACTCGG+AGG | 0.723923 | 6.1:+66964195 | None:intergenic |
| AAAGGAAGTGAAACTCACAG+AGG | 0.773932 | 6.1:-66965315 | MS.gene069682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTGTTTTTATAATAATAT+CGG | - | chr6.1:66967366-66967385 | MS.gene069682:intron | 10.0% |
| !! | AACTTCAAAAATTAACTATT+AGG | + | chr6.1:66964875-66964894 | None:intergenic | 15.0% |
| !!! | TCAAAGTCTAATTTTTTAAT+TGG | + | chr6.1:66964952-66964971 | None:intergenic | 15.0% |
| !!! | TTATGAGTATATTTCTTTTT+AGG | + | chr6.1:66967157-66967176 | None:intergenic | 15.0% |
| !! | AATTATTATTGCACAGTAAA+AGG | - | chr6.1:66965098-66965117 | MS.gene069682:CDS | 20.0% |
| !! | ACACTATATTGAAACTATAA+AGG | - | chr6.1:66964750-66964769 | MS.gene069682:intron | 20.0% |
| !! | ATTATTATTGCACAGTAAAA+GGG | - | chr6.1:66965099-66965118 | MS.gene069682:CDS | 20.0% |
| !! | CAATTCAATTCTTAAGTATA+TGG | - | chr6.1:66967077-66967096 | MS.gene069682:intron | 20.0% |
| !! | CTGTTACAATTTAAATATCT+TGG | - | chr6.1:66965374-66965393 | MS.gene069682:intron | 20.0% |
| !! | TATAACAAATGTTGAAAATG+AGG | - | chr6.1:66966089-66966108 | MS.gene069682:intron | 20.0% |
| !! | TCAACTAAATATATTACCTT+TGG | + | chr6.1:66966991-66967010 | None:intergenic | 20.0% |
| !! | TCATAAATCATTGTAATGTT+TGG | - | chr6.1:66967171-66967190 | MS.gene069682:intron | 20.0% |
| !! | TTTCTCAACTAATGAAAATA+AGG | - | chr6.1:66967329-66967348 | MS.gene069682:intron | 20.0% |
| !!! | AAGTGTTTTTTAAGGAAAAA+AGG | + | chr6.1:66964080-66964099 | None:intergenic | 20.0% |
| !!! | ATTTTGTATTCTACAATACA+AGG | + | chr6.1:66966182-66966201 | None:intergenic | 20.0% |
| !!! | GGGAAAATATCATTTTTTAA+TGG | - | chr6.1:66965244-66965263 | MS.gene069682:CDS | 20.0% |
| !!! | TTGATCAAGATTTTGAATTA+TGG | - | chr6.1:66964398-66964417 | MS.gene069682:CDS | 20.0% |
| !!! | TTGTAAGTATCAAATTTTGA+GGG | + | chr6.1:66965277-66965296 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATCTTTTGTGTT+TGG | - | chr6.1:66965301-66965320 | MS.gene069682:CDS | 20.0% |
| ! | AAAGAAATACAAAGCAACAT+TGG | + | chr6.1:66967204-66967223 | None:intergenic | 25.0% |
| ! | AAGAAATACAAAGCAACATT+GGG | + | chr6.1:66967203-66967222 | None:intergenic | 25.0% |
| ! | ATCAACATAGTTCTTGTTAA+GGG | + | chr6.1:66964321-66964340 | None:intergenic | 25.0% |
| ! | ATCAATTCAGTTCTTGAATA+GGG | - | chr6.1:66964816-66964835 | MS.gene069682:intron | 25.0% |
| ! | CAATGTATGACAAAATTCAA+AGG | + | chr6.1:66967020-66967039 | None:intergenic | 25.0% |
| ! | CAGATAAATAAGTACACTTA+TGG | - | chr6.1:66965055-66965074 | MS.gene069682:CDS | 25.0% |
| ! | CATAAGTGTACTTATTTATC+TGG | + | chr6.1:66965057-66965076 | None:intergenic | 25.0% |
| ! | CTCAATACTACCAATTTATA+CGG | - | chr6.1:66967248-66967267 | MS.gene069682:intron | 25.0% |
| ! | GATAAAACATATTGTTCGTT+CGG | - | chr6.1:66965881-66965900 | MS.gene069682:intron | 25.0% |
| ! | GTATTATGTAATATAGTAGC+AGG | - | chr6.1:66965955-66965974 | MS.gene069682:intron | 25.0% |
| ! | TAACAAGAACTATGTTGATA+TGG | - | chr6.1:66964322-66964341 | MS.gene069682:CDS | 25.0% |
| ! | TATATGTCAAAATGAAGATG+AGG | + | chr6.1:66966073-66966092 | None:intergenic | 25.0% |
| ! | TATATTACATAATACCAGAG+AGG | + | chr6.1:66965950-66965969 | None:intergenic | 25.0% |
| ! | TATCAACATAGTTCTTGTTA+AGG | + | chr6.1:66964322-66964341 | None:intergenic | 25.0% |
| ! | TCTAAATCTAAAGATCCAAA+CGG | + | chr6.1:66964684-66964703 | None:intergenic | 25.0% |
| !! | ATATGTTTACGTGTTGATAT+AGG | - | chr6.1:66964147-66964166 | MS.gene069682:CDS | 25.0% |
| !! | CTTTGAATTTTGTCATACAT+TGG | - | chr6.1:66967018-66967037 | MS.gene069682:intron | 25.0% |
| !! | GGATCAAATTTTAAACTAAG+AGG | - | chr6.1:66964771-66964790 | MS.gene069682:intron | 25.0% |
| !! | GTTGTAAGTATCAAATTTTG+AGG | + | chr6.1:66965278-66965297 | None:intergenic | 25.0% |
| !! | GTTTTTCACATCAATTATCT+TGG | - | chr6.1:66966933-66966952 | MS.gene069682:intron | 25.0% |
| !! | TACATCTAAAATCATGTTGA+GGG | + | chr6.1:66965813-66965832 | None:intergenic | 25.0% |
| !! | TCATGACTTGTAACTTATAT+TGG | - | chr6.1:66966371-66966390 | MS.gene069682:CDS | 25.0% |
| !!! | AAGTTGCTTTTTTGAAGAAA+GGG | - | chr6.1:66965224-66965243 | MS.gene069682:CDS | 25.0% |
| !!! | GATCAAGACTTTTAAAGAAA+AGG | + | chr6.1:66965012-66965031 | None:intergenic | 25.0% |
| !!! | TGTTATTTTTCTTGCTCTAA+GGG | - | chr6.1:66967432-66967451 | MS.gene069682:intron | 25.0% |
| AATAAGACTAAGTGCATGTT+TGG | - | chr6.1:66964466-66964485 | MS.gene069682:intron | 30.0% | |
| ACTATGTTAGGCTTATCATA+TGG | + | chr6.1:66965649-66965668 | None:intergenic | 30.0% | |
| AGAAAAAGTTGTGAATCTCT+TGG | - | chr6.1:66967749-66967768 | MS.gene069682:intron | 30.0% | |
| AGTGATTAAATTGACGAGAT+AGG | - | chr6.1:66964896-66964915 | MS.gene069682:intron | 30.0% | |
| ATGTGAAAAACAAGATCATC+CGG | + | chr6.1:66966924-66966943 | None:intergenic | 30.0% | |
| CATCAATTCAGTTCTTGAAT+AGG | - | chr6.1:66964815-66964834 | MS.gene069682:intron | 30.0% | |
| CTAATGGTATAGCTCAAATT+GGG | - | chr6.1:66964978-66964997 | MS.gene069682:CDS | 30.0% | |
| CTATTCAAGAACTGAATTGA+TGG | + | chr6.1:66964817-66964836 | None:intergenic | 30.0% | |
| CTTAGAGCAAGAAAAATAAC+AGG | + | chr6.1:66967433-66967452 | None:intergenic | 30.0% | |
| GAGAAATTCAATGTGAAAGT+TGG | + | chr6.1:66966969-66966988 | None:intergenic | 30.0% | |
| GTGATTAAATTGACGAGATA+GGG | - | chr6.1:66964897-66964916 | MS.gene069682:intron | 30.0% | |
| TAATGGTATAGCTCAAATTG+GGG | - | chr6.1:66964979-66964998 | MS.gene069682:CDS | 30.0% | |
| TATACTCTCATCCATCAATT+TGG | + | chr6.1:66964822-66964803 | None:intergenic | 30.0% | |
| TTCACATTGAATTTCTCCAA+AGG | - | chr6.1:66966972-66966991 | MS.gene069682:intron | 30.0% | |
| TTTGTTCAATTATGCAGAAC+CGG | - | chr6.1:66965470-66965489 | MS.gene069682:intron | 30.0% | |
| ! | AAATGTGATGGAAAATTGCT+TGG | - | chr6.1:66967461-66967480 | MS.gene069682:intron | 30.0% |
| ! | AAGGTTTAAAATTGTCTCCA+AGG | - | chr6.1:66967524-66967543 | MS.gene069682:intron | 30.0% |
| ! | ACATTGATACTTTTCACCAA+TGG | + | chr6.1:66966831-66966850 | None:intergenic | 30.0% |
| ! | ATGGATGAGAGTATAGTATA+GGG | - | chr6.1:66964848-66964867 | MS.gene069682:intron | 30.0% |
| ! | ATGTAGCTTTTGCAAAATCA+GGG | - | chr6.1:66964529-66964548 | MS.gene069682:intron | 30.0% |
| ! | ATTTTGCAAAAGCTACATCA+GGG | + | chr6.1:66964527-66964546 | None:intergenic | 30.0% |
| ! | GTACATCTAAAATCATGTTG+AGG | + | chr6.1:66965814-66965833 | None:intergenic | 30.0% |
| ! | TCTTTTGGTATAGAATTCTC+TGG | + | chr6.1:66964182-66964201 | None:intergenic | 30.0% |
| ! | TGCTTTGTATTTCTTTTGAC+AGG | - | chr6.1:66967208-66967227 | MS.gene069682:intron | 30.0% |
| ! | TTCATTTGTTACTACTTGGA+TGG | - | chr6.1:66964265-66964284 | MS.gene069682:CDS | 30.0% |
| ! | TTTAGATCTTTTGTGTTTGG+TGG | - | chr6.1:66965304-66965323 | MS.gene069682:CDS | 30.0% |
| !! | AATGATGAGTTGATGTTAGA+TGG | - | chr6.1:66964221-66964240 | MS.gene069682:CDS | 30.0% |
| !! | GTAGTTCTGTATTTTCTTAG+AGG | - | chr6.1:66965774-66965793 | MS.gene069682:intron | 30.0% |
| !! | GTGAAAAGTATCAATGTTAG+CGG | - | chr6.1:66966834-66966853 | MS.gene069682:intron | 30.0% |
| !! | TAGACTTTGAAACAACCTAA+TGG | - | chr6.1:66964962-66964981 | MS.gene069682:CDS | 30.0% |
| !! | TCAGTACTTTCAAGTTTCAA+TGG | + | chr6.1:66965432-66965451 | None:intergenic | 30.0% |
| !! | TCTTTGGAATTGATAGAACT+TGG | + | chr6.1:66967783-66967802 | None:intergenic | 30.0% |
| !! | TTGATCTTTGAAGCTTTGTT+TGG | - | chr6.1:66965026-66965045 | MS.gene069682:CDS | 30.0% |
| !!! | ACACACACTTAGTTTTTTGT+TGG | - | chr6.1:66964101-66964120 | MS.gene069682:CDS | 30.0% |
| !!! | CAAGTTGCTTTTTTGAAGAA+AGG | - | chr6.1:66965223-66965242 | MS.gene069682:CDS | 30.0% |
| !!! | CTGTTATTTTTCTTGCTCTA+AGG | - | chr6.1:66967431-66967450 | MS.gene069682:intron | 30.0% |
| !!! | GTTTAGCTTTTAAAAGGAAG+TGG | - | chr6.1:66965596-66965615 | MS.gene069682:intron | 30.0% |
| !!! | TAGCTGGTTTAGCTTTTAAA+AGG | - | chr6.1:66965590-66965609 | MS.gene069682:intron | 30.0% |
| !!! | TGTGTGTGAAGTGTTTTTTA+AGG | + | chr6.1:66964088-66964107 | None:intergenic | 30.0% |
| AAAATACGGATGGATAGTTC+CGG | - | chr6.1:66967626-66967645 | MS.gene069682:CDS | 35.0% | |
| AAAATTGTCTCCAAGGACAT+AGG | - | chr6.1:66967531-66967550 | MS.gene069682:CDS | 35.0% | |
| AAAATTTGCCAGGTACTTTG+AGG | - | chr6.1:66966536-66966555 | MS.gene069682:intron | 35.0% | |
| AAGGAAGGAATTGAGAAAAC+AGG | - | chr6.1:66967501-66967520 | MS.gene069682:intron | 35.0% | |
| AAGGAATTGAGAAAACAGGA+AGG | - | chr6.1:66967505-66967524 | MS.gene069682:intron | 35.0% | |
| AATATGCTACACAGGTTTGT+TGG | - | chr6.1:66966511-66966530 | MS.gene069682:intron | 35.0% | |
| AATGGTATAGCTCAAATTGG+GGG | - | chr6.1:66964980-66964999 | MS.gene069682:CDS | 35.0% | |
| ACCATTTCAACAGCTTTCAA+TGG | + | chr6.1:66966609-66966628 | None:intergenic | 35.0% | |
| AGCAGAGAATGATAGTTTCA+GGG | + | chr6.1:66965203-66965222 | None:intergenic | 35.0% | |
| ATGATAAGCTTATCACACTC+AGG | + | chr6.1:66964293-66964312 | None:intergenic | 35.0% | |
| CAGACAAAGAGAAAATCAGA+AGG | - | chr6.1:66965619-66965638 | MS.gene069682:intron | 35.0% | |
| CAGATAGGATCTTGATATTG+CGG | - | chr6.1:66964430-66964449 | MS.gene069682:CDS | 35.0% | |
| CATCTATTCAATGCTCCTAT+TGG | - | chr6.1:66965511-66965530 | MS.gene069682:intron | 35.0% | |
| CCAATTTGAGCTATACCATT+AGG | + | chr6.1:66964980-66964999 | None:intergenic | 35.0% | |
| CCTAATGGTATAGCTCAAAT+TGG | - | chr6.1:66964977-66964996 | MS.gene069682:CDS | 35.0% | |
| GATAAGCCTAACATAGTTAC+CGG | - | chr6.1:66965652-66965671 | MS.gene069682:intron | 35.0% | |
| GATGAGGCAATAAATTTAGC+AGG | + | chr6.1:66966057-66966076 | None:intergenic | 35.0% | |
| GCTGTTTAAATATGCTACAC+AGG | - | chr6.1:66966503-66966522 | MS.gene069682:intron | 35.0% | |
| GCTTCTTACTAAGAAGAACA+AGG | - | chr6.1:66966710-66966729 | MS.gene069682:intron | 35.0% | |
| GGAAAAAAGGACACTTACTT+AGG | + | chr6.1:66964067-66964086 | None:intergenic | 35.0% | |
| TAAGGGCTACAAAAATGTGA+TGG | - | chr6.1:66967449-66967468 | MS.gene069682:intron | 35.0% | |
| TACTACCAATTTATACGGCT+AGG | - | chr6.1:66967253-66967272 | MS.gene069682:intron | 35.0% | |
| TCCATTGAAAGCTGTTGAAA+TGG | - | chr6.1:66966605-66966624 | MS.gene069682:intron | 35.0% | |
| TGAGTGTGATAAGCTTATCA+TGG | - | chr6.1:66964292-66964311 | MS.gene069682:CDS | 35.0% | |
| TGATGTTAGATGGAAAACCA+AGG | - | chr6.1:66964231-66964250 | MS.gene069682:CDS | 35.0% | |
| TGTGTGGTTAAGAAATGTGT+TGG | - | chr6.1:66965913-66965932 | MS.gene069682:intron | 35.0% | |
| TTGAATAGGGACCAAATTGA+TGG | - | chr6.1:66964829-66964848 | MS.gene069682:intron | 35.0% | |
| TTTGTTGGGAAAAATTTGCC+AGG | - | chr6.1:66966526-66966545 | MS.gene069682:intron | 35.0% | |
| ! | AACACAAGAATTCTGAAGGA+AGG | - | chr6.1:66967486-66967505 | MS.gene069682:intron | 35.0% |
| ! | ATATGCTACACAGGTTTGTT+GGG | - | chr6.1:66966512-66966531 | MS.gene069682:intron | 35.0% |
| ! | ATCTAAAATCATGTTGAGGG+TGG | + | chr6.1:66965810-66965829 | None:intergenic | 35.0% |
| ! | ATCTGATATGCTGCATCTTT+TGG | + | chr6.1:66964197-66964216 | None:intergenic | 35.0% |
| ! | GATGGATGAGAGTATAGTAT+AGG | - | chr6.1:66964847-66964866 | MS.gene069682:intron | 35.0% |
| ! | GATGTAGCTTTTGCAAAATC+AGG | - | chr6.1:66964528-66964547 | MS.gene069682:intron | 35.0% |
| ! | GATTTTGCAAAAGCTACATC+AGG | + | chr6.1:66964528-66964547 | None:intergenic | 35.0% |
| ! | GCTGTAAAGAAGTACATTTC+TGG | - | chr6.1:66965859-66965878 | MS.gene069682:intron | 35.0% |
| ! | GTGCTATTATATTCACACAC+CGG | + | chr6.1:66965492-66965511 | None:intergenic | 35.0% |
| ! | GTTCTGTATTTTCTTAGAGG+CGG | - | chr6.1:66965777-66965796 | MS.gene069682:intron | 35.0% |
| ! | TACTTTTCACCAATGGCAAA+CGG | + | chr6.1:66966824-66966843 | None:intergenic | 35.0% |
| ! | TCTAAAATCATGTTGAGGGT+GGG | + | chr6.1:66965809-66965828 | None:intergenic | 35.0% |
| ! | TGGCTTCATTTGTTACTACT+TGG | - | chr6.1:66964261-66964280 | MS.gene069682:CDS | 35.0% |
| ! | TTGGTGGTTGGATGAAAATT+TGG | - | chr6.1:66965320-66965339 | MS.gene069682:CDS | 35.0% |
| AAACAACCCAACCAATACCA+GGG | + | chr6.1:66966881-66966900 | None:intergenic | 40.0% | |
| AAAGGAAGTGAAACTCACAG+AGG | - | chr6.1:66966566-66966585 | MS.gene069682:intron | 40.0% | |
| AAGCTGAGATTCTTAGGTAC+TGG | - | chr6.1:66967868-66967887 | MS.gene069682:CDS | 40.0% | |
| AATGAAGCCAAGTTAAGCCT+TGG | + | chr6.1:66964251-66964270 | None:intergenic | 40.0% | |
| AATGTTAGCGGTCACAAGTA+CGG | - | chr6.1:66966846-66966865 | MS.gene069682:intron | 40.0% | |
| ACCATCTGAGAAAATACGGA+TGG | - | chr6.1:66967616-66967635 | MS.gene069682:CDS | 40.0% | |
| ACTAAGAAGAACAAGGAGAC+AGG | - | chr6.1:66966717-66966736 | MS.gene069682:intron | 40.0% | |
| AGAAGATCAGGGTAGAGAAA+CGG | + | chr6.1:66966792-66966811 | None:intergenic | 40.0% | |
| AGAGGAAACAAAGCATGAGA+CGG | + | chr6.1:66966117-66966136 | None:intergenic | 40.0% | |
| AGAGTCAAGCTGAGATTCTT+AGG | - | chr6.1:66967862-66967881 | MS.gene069682:CDS | 40.0% | |
| ATGGGATACTCCAATTCATG+TGG | - | chr6.1:66966740-66966759 | MS.gene069682:intron | 40.0% | |
| CACAGAGGATTACTATGTGA+TGG | - | chr6.1:66966581-66966600 | MS.gene069682:intron | 40.0% | |
| CACCCTAAACTAAAGCAGAA+AGG | + | chr6.1:66966243-66966262 | None:intergenic | 40.0% | |
| CTAAAATCATGTTGAGGGTG+GGG | + | chr6.1:66965808-66965827 | None:intergenic | 40.0% | |
| CTAAATCTGACGATGGTCTA+CGG | - | chr6.1:66964722-66964741 | MS.gene069682:intron | 40.0% | |
| CTATGTACATTGTGGATGAG+TGG | + | chr6.1:66966034-66966053 | None:intergenic | 40.0% | |
| CTCTCAAACAGTTTCACAAG+TGG | + | chr6.1:66966303-66966322 | None:intergenic | 40.0% | |
| GACGAGATAGGGATAGTTTA+GGG | - | chr6.1:66964908-66964927 | MS.gene069682:intron | 40.0% | |
| GAGCAGAGAATGATAGTTTC+AGG | + | chr6.1:66965204-66965223 | None:intergenic | 40.0% | |
| GAGCTATCATAGAGAGCTTA+TGG | + | chr6.1:66966353-66966372 | None:intergenic | 40.0% | |
| GCAGACCATCTGAGAAAATA+CGG | - | chr6.1:66967612-66967631 | MS.gene069682:CDS | 40.0% | |
| GGAAATCCCATAGAAGATCA+GGG | + | chr6.1:66966803-66966822 | None:intergenic | 40.0% | |
| GGCAAACACAAGAATTCTGA+AGG | - | chr6.1:66967482-66967501 | MS.gene069682:intron | 40.0% | |
| GTGGTTAAGAAATGTGTTGG+TGG | - | chr6.1:66965916-66965935 | MS.gene069682:intron | 40.0% | |
| TCTCTACCCTGATCTTCTAT+GGG | - | chr6.1:66966794-66966813 | MS.gene069682:intron | 40.0% | |
| TCTCTCTCTAAATCTGACGA+TGG | - | chr6.1:66964715-66964734 | MS.gene069682:intron | 40.0% | |
| TGACGAGATAGGGATAGTTT+AGG | - | chr6.1:66964907-66964926 | MS.gene069682:intron | 40.0% | |
| TGGAAAACCAAGGCTTAACT+TGG | - | chr6.1:66964241-66964260 | MS.gene069682:CDS | 40.0% | |
| TTAAACAGCGTCAAACATCG+AGG | + | chr6.1:66966492-66966511 | None:intergenic | 40.0% | |
| TTAGCAGGCTATGTACATTG+TGG | + | chr6.1:66966042-66966061 | None:intergenic | 40.0% | |
| TTAGCTCCGGTAACTATGTT+AGG | + | chr6.1:66965661-66965680 | None:intergenic | 40.0% | |
| TTCAGAGAGAATGCAACAAG+TGG | + | chr6.1:66967561-66967580 | None:intergenic | 40.0% | |
| TTCCAAAGATGCTCATGTTG+CGG | - | chr6.1:66967794-66967813 | MS.gene069682:intron | 40.0% | |
| TTCTCTACCCTGATCTTCTA+TGG | - | chr6.1:66966793-66966812 | MS.gene069682:intron | 40.0% | |
| ! | ATGTTCTCGTTTTGTCCATC+TGG | + | chr6.1:66964004-66964023 | None:intergenic | 40.0% |
| ! | CGCCTTTCTGCTTTAGTTTA+GGG | - | chr6.1:66966238-66966257 | MS.gene069682:CDS | 40.0% |
| ! | TCCATCCGTATTTTCTCAGA+TGG | + | chr6.1:66967620-66967639 | None:intergenic | 40.0% |
| !! | ATCTGTGTTGCAGCCATTTT+GGG | - | chr6.1:66966642-66966661 | MS.gene069682:intron | 40.0% |
| !! | GATCTTTTGTGTTTGGTGGT+TGG | - | chr6.1:66965308-66965327 | MS.gene069682:CDS | 40.0% |
| !! | GTACTTTGAGGTTGAGCTAA+AGG | - | chr6.1:66966548-66966567 | MS.gene069682:intron | 40.0% |
| !! | TACTGGAAGAAGCTTGTTGA+TGG | - | chr6.1:66967885-66967904 | MS.gene069682:CDS | 40.0% |
| !! | TGTTTACCCTGGTATTGGTT+GGG | - | chr6.1:66966872-66966891 | MS.gene069682:intron | 40.0% |
| !! | TTGTTTACCCTGGTATTGGT+TGG | - | chr6.1:66966871-66966890 | MS.gene069682:intron | 40.0% |
| AACCGCAACATGAGCATCTT+TGG | + | chr6.1:66967799-66967818 | None:intergenic | 45.0% | |
| AATCCTCCCTAATCACCACT+CGG | + | chr6.1:66967692-66967711 | None:intergenic | 45.0% | |
| AGAAGAACAAGGAGACAGGA+TGG | - | chr6.1:66966721-66966740 | MS.gene069682:intron | 45.0% | |
| AGGAAACAAAGCATGAGACG+GGG | + | chr6.1:66966115-66966134 | None:intergenic | 45.0% | |
| ATCAACCTGCACATTAGCTC+CGG | + | chr6.1:66965674-66965693 | None:intergenic | 45.0% | |
| ATGGGATTTCCGTTTGCCAT+TGG | - | chr6.1:66966812-66966831 | MS.gene069682:intron | 45.0% | |
| ATTTATACGGCTAGGCTTCG+AGG | - | chr6.1:66967261-66967280 | MS.gene069682:intron | 45.0% | |
| CAAAATGGCTGCAACACAGA+TGG | + | chr6.1:66966643-66966662 | None:intergenic | 45.0% | |
| CAAACAACCCAACCAATACC+AGG | + | chr6.1:66966882-66966901 | None:intergenic | 45.0% | |
| CAAACATCGAGGTCTCTGTT+TGG | + | chr6.1:66966481-66966500 | None:intergenic | 45.0% | |
| CGAAGCCTAGCCGTATAAAT+TGG | + | chr6.1:66967261-66967280 | None:intergenic | 45.0% | |
| CGGAAATCCCATAGAAGATC+AGG | + | chr6.1:66966804-66966823 | None:intergenic | 45.0% | |
| GAAGAACAAGGAGACAGGAT+GGG | - | chr6.1:66966722-66966741 | MS.gene069682:intron | 45.0% | |
| GAGGAAACAAAGCATGAGAC+GGG | + | chr6.1:66966116-66966135 | None:intergenic | 45.0% | |
| GTCTGACCTTACCTTTGAGT+CGG | + | chr6.1:66965982-66966001 | None:intergenic | 45.0% | |
| TAGGTTTGTCAGAATCAGCG+TGG | + | chr6.1:66964559-66964578 | None:intergenic | 45.0% | |
| TCAACTGTCACACATCCAGA+TGG | - | chr6.1:66963986-66964005 | MS.gene069682:CDS | 45.0% | |
| TCAGAGGCAATAATGCTAGC+TGG | - | chr6.1:66965574-66965593 | MS.gene069682:intron | 45.0% | |
| TCTGACCTTACCTTTGAGTC+GGG | + | chr6.1:66965981-66966000 | None:intergenic | 45.0% | |
| TGGTATCACAGCGAGTTTGT+TGG | - | chr6.1:66964486-66964505 | MS.gene069682:intron | 45.0% | |
| TGGTGGAGAAAATTCCTCTC+TGG | - | chr6.1:66965933-66965952 | MS.gene069682:intron | 45.0% | |
| TTATGGTTGCGATCGCAGAT+AGG | - | chr6.1:66964415-66964434 | MS.gene069682:CDS | 45.0% | |
| TTCTAGATACGTGCGTGAAC+AGG | - | chr6.1:66964039-66964058 | MS.gene069682:CDS | 45.0% | |
| ! | ACATTGTGGATGAGTGGACT+AGG | + | chr6.1:66966028-66966047 | None:intergenic | 45.0% |
| ! | AGTCAGCGTTGAACCCAAAA+TGG | + | chr6.1:66966658-66966677 | None:intergenic | 45.0% |
| ! | CATCTGTGTTGCAGCCATTT+TGG | - | chr6.1:66966641-66966660 | MS.gene069682:intron | 45.0% |
| ! | GCGCCTTTCTGCTTTAGTTT+AGG | - | chr6.1:66966237-66966256 | MS.gene069682:CDS | 45.0% |
| ! | TAGCTCAACCTCAAAGTACC+TGG | + | chr6.1:66966547-66966566 | None:intergenic | 45.0% |
| !! | AAGTACGGTCTTGTTTACCC+TGG | - | chr6.1:66966861-66966880 | MS.gene069682:intron | 45.0% |
| !! | CAGTAGGTGTTGGAACTGTA+GGG | - | chr6.1:66965548-66965567 | MS.gene069682:intron | 45.0% |
| !! | CGCTGATTCTGACAAACCTA+CGG | - | chr6.1:66964559-66964578 | MS.gene069682:intron | 45.0% |
| !! | CTGGTATTGGTTGGGTTGTT+TGG | - | chr6.1:66966880-66966899 | MS.gene069682:intron | 45.0% |
| !! | CTTGTTGATGGCAAGAGAGT+TGG | - | chr6.1:66967897-66967916 | MS.gene069682:CDS | 45.0% |
| !! | GGTCTTGTTTACCCTGGTAT+TGG | - | chr6.1:66966867-66966886 | MS.gene069682:intron | 45.0% |
| !! | GTATTGGTTGGGTTGTTTGG+AGG | - | chr6.1:66966883-66966902 | MS.gene069682:intron | 45.0% |
| !! | TGCATGCTTGTTATCACCGT+AGG | + | chr6.1:66964578-66964597 | None:intergenic | 45.0% |
| !! | TTTATGGTGTTGCAGCCGTT+TGG | - | chr6.1:66964666-66964685 | MS.gene069682:intron | 45.0% |
| !!! | ATTTTGGGTTCAACGCTGAC+TGG | - | chr6.1:66966657-66966676 | MS.gene069682:intron | 45.0% |
| !!! | AAAATTATAAGTTATTTTTA+TGG | - | chr6.1:66964650-66964669 | MS.gene069682:CDS | 5.0% |
| AAGTGGCACACCTATGTCCT+TGG | + | chr6.1:66967544-66967563 | None:intergenic | 50.0% | |
| ACCTGAAGCTCAGTAGTGAC+AGG | + | chr6.1:66964356-66964375 | None:intergenic | 50.0% | |
| AGGCTGAAGGCCTAAAGCAA+GGG | + | chr6.1:66966008-66966027 | None:intergenic | 50.0% | |
| AGTTACCGGAGCTAATGTGC+AGG | - | chr6.1:66965666-66965685 | MS.gene069682:intron | 50.0% | |
| ATTCATGTGGATGCTGCGAG+CGG | - | chr6.1:66966753-66966772 | MS.gene069682:intron | 50.0% | |
| CAATGCTCCTATTGGTGCAG+AGG | - | chr6.1:66965519-66965538 | MS.gene069682:intron | 50.0% | |
| CGTTCGGACAGAAACATGTG+TGG | - | chr6.1:66965897-66965916 | MS.gene069682:intron | 50.0% | |
| CTCGCAGCATCCACATGAAT+TGG | + | chr6.1:66966753-66966772 | None:intergenic | 50.0% | |
| GACTGCATGCTCACTTCGAT+AGG | - | chr6.1:66965746-66965765 | MS.gene069682:intron | 50.0% | |
| GAGGAAACTGCAGTAGGTGT+TGG | - | chr6.1:66965538-66965557 | MS.gene069682:intron | 50.0% | |
| GCAATGTGAGGCCTAAAGCT+AGG | + | chr6.1:66966149-66966168 | None:intergenic | 50.0% | |
| GCAGTTTCCTCTGCACCAAT+AGG | + | chr6.1:66965529-66965548 | None:intergenic | 50.0% | |
| GGAGGATTTCAGCTGTAGCT+TGG | - | chr6.1:66967704-66967723 | MS.gene069682:CDS | 50.0% | |
| TAGGCTGAAGGCCTAAAGCA+AGG | + | chr6.1:66966009-66966028 | None:intergenic | 50.0% | |
| TATCGCGAGTGAGACAAGTG+AGG | - | chr6.1:66967818-66967837 | MS.gene069682:intron | 50.0% | |
| TCCTGTCACTACTGAGCTTC+AGG | - | chr6.1:66964352-66964371 | MS.gene069682:CDS | 50.0% | |
| TGGAACTGTAGGGTCATCAG+AGG | - | chr6.1:66965558-66965577 | MS.gene069682:intron | 50.0% | |
| TTTAGGCCTCACATTGCCTG+CGG | - | chr6.1:66966152-66966171 | MS.gene069682:intron | 50.0% | |
| ! | AAAGCTAGGTGTCGCATCAG+AGG | + | chr6.1:66966135-66966154 | None:intergenic | 50.0% |
| ! | AACGCTGACTGGAGAGTTTG+AGG | - | chr6.1:66966668-66966687 | MS.gene069682:intron | 50.0% |
| ! | ATAGCTCAAATTGGGGGTGC+AGG | - | chr6.1:66964986-66965005 | MS.gene069682:CDS | 50.0% |
| ! | CTGATGCGACACCTAGCTTT+AGG | - | chr6.1:66966135-66966154 | MS.gene069682:intron | 50.0% |
| !! | GAGGCATAAAGCTGACTTGC+CGG | - | chr6.1:66966902-66966921 | MS.gene069682:intron | 50.0% |
| !! | GCAGTAGGTGTTGGAACTGT+AGG | - | chr6.1:66965547-66965566 | MS.gene069682:intron | 50.0% |
| CCTAATCACCACTCGGAGGA+CGG | + | chr6.1:66967685-66967704 | None:intergenic | 55.0% | |
| CGTCCTCCGAGTGGTGATTA+GGG | - | chr6.1:66967683-66967702 | MS.gene069682:CDS | 55.0% | |
| GGTGCAGAGGAAACTGCAGT+AGG | - | chr6.1:66965532-66965551 | MS.gene069682:intron | 55.0% | |
| GTCAGACGAGCCCTTGCTTT+AGG | - | chr6.1:66965995-66966014 | MS.gene069682:intron | 55.0% | |
| TACAATACAAGGCCGACCGC+AGG | + | chr6.1:66966171-66966190 | None:intergenic | 55.0% | |
| TAGTAGCAGGCCCGACTCAA+AGG | - | chr6.1:66965968-66965987 | MS.gene069682:intron | 55.0% | |
| ! | GCGATGTGTTTTGCGTCTGC+GGG | + | chr6.1:66967663-66967682 | None:intergenic | 55.0% |
| ! | GGCGATGTGTTTTGCGTCTG+CGG | + | chr6.1:66967664-66967683 | None:intergenic | 55.0% |
| !! | GGATGAGTGGACTAGGCTGA+AGG | + | chr6.1:66966021-66966040 | None:intergenic | 55.0% |
| CCGTCCTCCGAGTGGTGATT+AGG | - | chr6.1:66967682-66967701 | MS.gene069682:CDS | 60.0% | |
| CCTCCCTAATCACCACTCGG+AGG | + | chr6.1:66967689-66967708 | None:intergenic | 60.0% | |
| CCTCCGAGTGGTGATTAGGG+AGG | - | chr6.1:66967686-66967705 | MS.gene069682:CDS | 60.0% | |
| GCAGGCCCGACTCAAAGGTA+AGG | - | chr6.1:66965973-66965992 | MS.gene069682:intron | 60.0% | |
| ! | TCTGCGGGCATTGTGTAGGC+CGG | + | chr6.1:66967648-66967667 | None:intergenic | 60.0% |
| ! | TGCGTCTGCGGGCATTGTGT+AGG | + | chr6.1:66967652-66967671 | None:intergenic | 60.0% |
| ACACATCGCCGTCCTCCGAG+TGG | - | chr6.1:66967674-66967693 | MS.gene069682:CDS | 65.0% | |
| CATGTGGATGCTGCGAGCGG+TGG | - | chr6.1:66966756-66966775 | MS.gene069682:intron | 65.0% | |
| GGCCTCACATTGCCTGCGGT+CGG | - | chr6.1:66966156-66966175 | MS.gene069682:intron | 65.0% | |
| GGCCGACCGCAGGCAATGTG+AGG | + | chr6.1:66966161-66966180 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 66963974 | 66967929 | 66963974 | ID=MS.gene069682 |
| chr6.1 | mRNA | 66963974 | 66967929 | 66963974 | ID=MS.gene069682.t1;Parent=MS.gene069682 |
| chr6.1 | exon | 66967835 | 66967929 | 66967835 | ID=MS.gene069682.t1.exon1;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66967835 | 66967929 | 66967835 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| chr6.1 | exon | 66967530 | 66967734 | 66967530 | ID=MS.gene069682.t1.exon2;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66967530 | 66967734 | 66967530 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| chr6.1 | exon | 66966216 | 66966416 | 66966216 | ID=MS.gene069682.t1.exon3;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66966216 | 66966416 | 66966216 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| chr6.1 | exon | 66964910 | 66965378 | 66964910 | ID=MS.gene069682.t1.exon4;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66964910 | 66965378 | 66964910 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| chr6.1 | exon | 66964621 | 66964673 | 66964621 | ID=MS.gene069682.t1.exon5;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66964621 | 66964673 | 66964621 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| chr6.1 | exon | 66963974 | 66964450 | 66963974 | ID=MS.gene069682.t1.exon6;Parent=MS.gene069682.t1 |
| chr6.1 | CDS | 66963974 | 66964450 | 66963974 | ID=cds.MS.gene069682.t1;Parent=MS.gene069682.t1 |
| Gene Sequence |
| Protein sequence |
