Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39882.t1 | KEH42571.1 | 99 | 100 | 1 | 0 | 1 | 100 | 2 | 101 | 1.20E-47 | 198.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39882.t1 | Q9M2J9 | 74.5 | 98 | 21 | 1 | 1 | 98 | 1 | 94 | 5.7e-33 | 141.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39882.t1 | A0A072VLR5 | 99.0 | 100 | 1 | 0 | 1 | 100 | 2 | 101 | 8.9e-48 | 198.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene39882 | 0.869438 | 3.10E-66 | -1.69E-46 |
| MS.gene049159 | MS.gene39882 | 0.837069 | 6.46E-57 | -1.69E-46 |
| MS.gene04918 | MS.gene39882 | 0.821449 | 4.01E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene39882 | 0.804617 | 1.98E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene39882 | 0.868748 | 5.18E-66 | -1.69E-46 |
| MS.gene049343 | MS.gene39882 | 0.823733 | 1.18E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene39882 | 0.829019 | 6.51E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene39882 | 0.813025 | 3.15E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene39882 | 0.831795 | 1.36E-55 | -1.69E-46 |
| MS.gene049653 | MS.gene39882 | 0.818448 | 1.95E-52 | -1.69E-46 |
| MS.gene049672 | MS.gene39882 | 0.810838 | 9.45E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene39882 | 0.825653 | 4.17E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene39882 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene39882 | 0.809131 | 2.20E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene39882 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene39882 | 0.844243 | 8.53E-59 | -1.69E-46 |
| MS.gene050156 | MS.gene39882 | 0.81041 | 1.17E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene39882 | 0.808165 | 3.54E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene39882 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene05045 | MS.gene39882 | 0.811875 | 5.63E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene39882 | 0.84417 | 8.92E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene39882 | 0.843316 | 1.51E-58 | -1.69E-46 |
| MS.gene050562 | MS.gene39882 | 0.827595 | 1.43E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene39882 | 0.819593 | 1.07E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene39882 | 0.817456 | 3.27E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene39882 | 0.823001 | 1.75E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene39882 | 0.829919 | 3.93E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene39882 | 0.803237 | 3.84E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene39882 | 0.825838 | 3.77E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene39882 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene39882 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene051363 | MS.gene39882 | 0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene39882 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene39882 | 0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene39882 | 0.857162 | 1.97E-62 | -1.69E-46 |
| MS.gene051957 | MS.gene39882 | 0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene39882 | 0.841301 | 5.16E-58 | -1.69E-46 |
| MS.gene052012 | MS.gene39882 | 0.816987 | 4.16E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene39882 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene39882 | 0.819292 | 1.25E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene39882 | -0.808186 | 3.50E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene39882 | 0.824717 | 6.94E-54 | -1.69E-46 |
| MS.gene052518 | MS.gene39882 | 0.817451 | 3.28E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene39882 | 0.872437 | 3.18E-67 | -1.69E-46 |
| MS.gene052582 | MS.gene39882 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene39882 | 0.81207 | 5.10E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene39882 | 0.852332 | 4.95E-61 | -1.69E-46 |
| MS.gene052863 | MS.gene39882 | 0.845084 | 5.06E-59 | -1.69E-46 |
| MS.gene052954 | MS.gene39882 | 0.837269 | 5.74E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene39882 | 0.837142 | 6.19E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene39882 | 0.834323 | 3.20E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene39882 | 0.825171 | 5.42E-54 | -1.69E-46 |
| MS.gene053146 | MS.gene39882 | 0.806269 | 8.93E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene39882 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene39882 | 0.866331 | 3.08E-65 | -1.69E-46 |
| MS.gene053272 | MS.gene39882 | -0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene39882 | 0.80257 | 5.27E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene39882 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene39882 | 0.835364 | 1.75E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene39882 | 0.839022 | 2.03E-57 | -1.69E-46 |
| MS.gene053998 | MS.gene39882 | 0.80556 | 1.26E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene39882 | 0.808789 | 2.61E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene39882 | 0.822055 | 2.91E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene39882 | 0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene39882 | 0.813171 | 2.93E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene39882 | 0.806432 | 8.25E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene39882 | 0.806943 | 6.44E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene39882 | 0.838271 | 3.17E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene39882 | 0.866179 | 3.45E-65 | -1.69E-46 |
| MS.gene054657 | MS.gene39882 | 0.811531 | 6.68E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene39882 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene39882 | 0.816151 | 6.41E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene39882 | 0.811272 | 7.61E-51 | -1.69E-46 |
| MS.gene054994 | MS.gene39882 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene39882 | 0.840629 | 7.75E-58 | -1.69E-46 |
| MS.gene055227 | MS.gene39882 | 0.815534 | 8.80E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene39882 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene055464 | MS.gene39882 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene39882 | 0.821449 | 4.01E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene39882 | 0.828633 | 8.06E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene39882 | 0.830737 | 2.48E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene39882 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene39882 | 0.84319 | 1.63E-58 | -1.69E-46 |
| MS.gene055724 | MS.gene39882 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene39882 | 0.870985 | 9.64E-67 | -1.69E-46 |
| MS.gene055841 | MS.gene39882 | 0.856271 | 3.60E-62 | -1.69E-46 |
| MS.gene055926 | MS.gene39882 | 0.802012 | 6.87E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene39882 | 0.800116 | 1.68E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene39882 | 0.828681 | 7.85E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene39882 | 0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene39882 | 0.827731 | 1.33E-54 | -1.69E-46 |
| MS.gene056215 | MS.gene39882 | 0.816469 | 5.44E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene39882 | 0.828855 | 7.13E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene39882 | 0.852692 | 3.91E-61 | -1.69E-46 |
| MS.gene056595 | MS.gene39882 | 0.823188 | 1.58E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene39882 | 0.862874 | 3.72E-64 | -1.69E-46 |
| MS.gene056776 | MS.gene39882 | 0.832411 | 9.60E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene39882 | 0.867152 | 1.69E-65 | -1.69E-46 |
| MS.gene05690 | MS.gene39882 | 0.824716 | 6.94E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene39882 | 0.822962 | 1.79E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene39882 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene39882 | 0.82782 | 1.27E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene39882 | 0.804365 | 2.24E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene39882 | 0.840268 | 9.63E-58 | -1.69E-46 |
| MS.gene057132 | MS.gene39882 | 0.816483 | 5.40E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene39882 | 0.868106 | 8.35E-66 | -1.69E-46 |
| MS.gene057392 | MS.gene39882 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene39882 | 0.825434 | 4.70E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene39882 | 0.841258 | 5.30E-58 | -1.69E-46 |
| MS.gene057693 | MS.gene39882 | 0.863581 | 2.25E-64 | -1.69E-46 |
| MS.gene057694 | MS.gene39882 | 0.837725 | 4.39E-57 | -1.69E-46 |
| MS.gene057855 | MS.gene39882 | 0.876627 | 1.20E-68 | -1.69E-46 |
| MS.gene057915 | MS.gene39882 | 0.80535 | 1.39E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene39882 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene39882 | 0.854888 | 9.12E-62 | -1.69E-46 |
| MS.gene058009 | MS.gene39882 | 0.874213 | 8.05E-68 | -1.69E-46 |
| MS.gene058010 | MS.gene39882 | 0.839425 | 1.60E-57 | -1.69E-46 |
| MS.gene058037 | MS.gene39882 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene39882 | 0.835562 | 1.56E-56 | -1.69E-46 |
| MS.gene05847 | MS.gene39882 | 0.826541 | 2.56E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene39882 | 0.834612 | 2.71E-56 | -1.69E-46 |
| MS.gene058634 | MS.gene39882 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene39882 | 0.835873 | 1.30E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene39882 | 0.861921 | 7.30E-64 | -1.69E-46 |
| MS.gene058979 | MS.gene39882 | 0.866946 | 1.97E-65 | -1.69E-46 |
| MS.gene05897 | MS.gene39882 | 0.830716 | 2.51E-55 | -1.69E-46 |
| MS.gene059146 | MS.gene39882 | 0.805714 | 1.17E-49 | -1.69E-46 |
| MS.gene059151 | MS.gene39882 | 0.831456 | 1.65E-55 | -1.69E-46 |
| MS.gene059317 | MS.gene39882 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene39882 | 0.804649 | 1.95E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene39882 | 0.804365 | 2.24E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene39882 | 0.813404 | 2.60E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene39882 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene059842 | MS.gene39882 | 0.834438 | 3.00E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene39882 | -0.828719 | 7.69E-55 | -1.69E-46 |
| MS.gene060244 | MS.gene39882 | 0.83252 | 9.02E-56 | -1.69E-46 |
| MS.gene060310 | MS.gene39882 | 0.828468 | 8.84E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene39882 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene39882 | 0.8268 | 2.22E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene39882 | 0.814566 | 1.44E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene39882 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene39882 | 0.813909 | 2.02E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene39882 | 0.880077 | 7.39E-70 | -1.69E-46 |
| MS.gene060937 | MS.gene39882 | 0.865977 | 3.99E-65 | -1.69E-46 |
| MS.gene061100 | MS.gene39882 | 0.811558 | 6.59E-51 | -1.69E-46 |
| MS.gene061135 | MS.gene39882 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene39882 | 0.813814 | 2.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39882.t1 | MTR_1g070240 | 99.000 | 100 | 1 | 0 | 1 | 100 | 2 | 101 | 1.51e-68 | 200 |
| MS.gene39882.t1 | MTR_1g070240 | 97.980 | 99 | 2 | 0 | 1 | 99 | 2 | 100 | 1.53e-66 | 196 |
| MS.gene39882.t1 | MTR_1g070240 | 98.305 | 59 | 1 | 0 | 1 | 59 | 2 | 60 | 1.81e-36 | 118 |
| MS.gene39882.t1 | MTR_1g044145 | 65.060 | 83 | 25 | 1 | 16 | 98 | 19 | 97 | 1.45e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39882.t1 | AT3G58170 | 73.737 | 99 | 22 | 1 | 1 | 99 | 1 | 95 | 7.72e-47 | 146 |
| MS.gene39882.t1 | AT4G14455 | 56.436 | 101 | 35 | 2 | 1 | 98 | 1 | 95 | 4.67e-35 | 117 |
Find 26 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGCAACTCTGTTGTTTC+GGG | 0.248402 | 1.4:-57421668 | None:intergenic |
| AAAGAGCAACTCTGTTGTTT+CGG | 0.302142 | 1.4:-57421669 | None:intergenic |
| CAATGGATGGATTGCAAGAT+AGG | 0.310657 | 1.4:+57421782 | MS.gene39882:CDS |
| ATTTATGTAGGGCAATGATA+TGG | 0.322400 | 1.4:+57422877 | MS.gene39882:intron |
| TATCATGCTCATCAATTTCA+TGG | 0.334184 | 1.4:-57421750 | None:intergenic |
| AACTATGGACAAATTCAAAA+TGG | 0.341736 | 1.4:+57422925 | MS.gene39882:CDS |
| GGGAGTCCTCTCAGGAACTA+TGG | 0.404717 | 1.4:+57422910 | MS.gene39882:CDS |
| TAACCGCATGCTGGATCATA+TGG | 0.436740 | 1.4:+57422777 | MS.gene39882:CDS |
| TCTTCAAGGGGAGTCCTCTC+AGG | 0.438524 | 1.4:+57422902 | MS.gene39882:CDS |
| GAGATATGATGAATTCTAGA+AGG | 0.474589 | 1.4:+57420448 | None:intergenic |
| GCAATGATATGGATTCTTCA+AGG | 0.476199 | 1.4:+57422888 | MS.gene39882:CDS |
| GTCTGTTTGCAACAGCTGTC+AGG | 0.490064 | 1.4:+57422727 | MS.gene39882:intron |
| GGATAATCATAACCGCATGC+TGG | 0.533691 | 1.4:+57422768 | MS.gene39882:CDS |
| TTTGATGGTATTGAGGAGGG+TGG | 0.537955 | 1.4:+57421691 | MS.gene39882:CDS |
| GATAATGAACAAGCAATGGA+TGG | 0.545746 | 1.4:+57421769 | MS.gene39882:CDS |
| ATCATGCTCATCAATTTCAT+GGG | 0.551837 | 1.4:-57421749 | None:intergenic |
| AGGTGATATACATGAGGAGG+TGG | 0.560404 | 1.4:+57422747 | MS.gene39882:CDS |
| CAATGATATGGATTCTTCAA+GGG | 0.571816 | 1.4:+57422889 | MS.gene39882:CDS |
| AATGGATGGATTGCAAGATA+GGG | 0.574154 | 1.4:+57421783 | MS.gene39882:CDS |
| GCATGATAATGAACAAGCAA+TGG | 0.600126 | 1.4:+57421765 | MS.gene39882:CDS |
| AATTTCATGGGAAGAAGCTG+AGG | 0.635387 | 1.4:-57421737 | None:intergenic |
| AATGATATGGATTCTTCAAG+GGG | 0.638351 | 1.4:+57422890 | MS.gene39882:CDS |
| ATTTGTCCATAGTTCCTGAG+AGG | 0.647858 | 1.4:-57422916 | None:intergenic |
| GTCAGGTGATATACATGAGG+AGG | 0.657694 | 1.4:+57422744 | MS.gene39882:CDS |
| GCTGTCAGGTGATATACATG+AGG | 0.690650 | 1.4:+57422741 | MS.gene39882:intron |
| ACACCATATGATCCAGCATG+CGG | 0.718029 | 1.4:-57422780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACATATTAATTAGAAA+AGG | - | chr1.4:57420509-57420528 | None:intergenic | 10.0% |
| !! | TGTAATTAATAATCAATAAT+AGG | + | chr1.4:57421172-57421191 | MS.gene39882:intron | 10.0% |
| !! | CTGTAATTATAATATCTATT+TGG | + | chr1.4:57422553-57422572 | MS.gene39882:intron | 15.0% |
| !!! | TAATATGTTATTTCATATTC+TGG | + | chr1.4:57420517-57420536 | MS.gene39882:intron | 15.0% |
| !! | AAATTAATCAGTGATATCTT+AGG | - | chr1.4:57421485-57421504 | None:intergenic | 20.0% |
| !! | AACAAAAATGAATAGAGAAA+AGG | + | chr1.4:57421102-57421121 | MS.gene39882:intron | 20.0% |
| !! | ATGAATAATTCTGATAAACA+TGG | - | chr1.4:57422487-57422506 | None:intergenic | 20.0% |
| !! | CAACTTGTATTTAAATACTA+TGG | + | chr1.4:57421037-57421056 | MS.gene39882:intron | 20.0% |
| !! | GAAACAATATCATATAAACA+AGG | - | chr1.4:57421977-57421996 | None:intergenic | 20.0% |
| !!! | AGTGTTTTATTGAATGTAAA+TGG | - | chr1.4:57422400-57422419 | None:intergenic | 20.0% |
| !!! | CTTGATATTTTATGCAATTA+TGG | + | chr1.4:57421507-57421526 | MS.gene39882:intron | 20.0% |
| !!! | TATATGATATTGTTTCTGTT+GGG | + | chr1.4:57421981-57422000 | MS.gene39882:intron | 20.0% |
| !!! | TTATATGATATTGTTTCTGT+TGG | + | chr1.4:57421980-57421999 | MS.gene39882:intron | 20.0% |
| !!! | TTTTGATATGTGTGATTTAT+TGG | + | chr1.4:57420659-57420678 | MS.gene39882:intron | 20.0% |
| ! | AACTATGGACAAATTCAAAA+TGG | + | chr1.4:57422925-57422944 | MS.gene39882:CDS | 25.0% |
| ! | AAGATCTTTAAATAGTCTAC+AGG | - | chr1.4:57422596-57422615 | None:intergenic | 25.0% |
| ! | ACAAATTTGTCACAAATATG+AGG | + | chr1.4:57421272-57421291 | MS.gene39882:intron | 25.0% |
| ! | AGTTAAAGCAGAAAAAGAAA+AGG | - | chr1.4:57422847-57422866 | None:intergenic | 25.0% |
| ! | ATGATTTAATGACATGTACA+AGG | - | chr1.4:57421327-57421346 | None:intergenic | 25.0% |
| ! | GAAAACAGTAAATTCCAATA+TGG | - | chr1.4:57421614-57421633 | None:intergenic | 25.0% |
| ! | TAAATAGTCTACAGGAAAAA+GGG | - | chr1.4:57422588-57422607 | None:intergenic | 25.0% |
| ! | TATCTGTTGGTATTTATGTA+GGG | + | chr1.4:57422866-57422885 | MS.gene39882:intron | 25.0% |
| ! | TCAAATAAACCTTAATGACA+TGG | - | chr1.4:57421411-57421430 | None:intergenic | 25.0% |
| ! | TTAAATAGTCTACAGGAAAA+AGG | - | chr1.4:57422589-57422608 | None:intergenic | 25.0% |
| !! | CAAAGCTTTGTAAATTTATC+CGG | - | chr1.4:57422086-57422105 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTCATTTTGGAA+TGG | + | chr1.4:57420698-57420717 | MS.gene39882:intron | 25.0% |
| !!! | TCGTTTTTGGTTTATTAGAA+TGG | + | chr1.4:57422035-57422054 | MS.gene39882:intron | 25.0% |
| !!! | TTGAGGTTTTGTTTTCATTT+TGG | + | chr1.4:57420693-57420712 | MS.gene39882:intron | 25.0% |
| AAAGGAGAAGGATTAAACAT+AGG | + | chr1.4:57421120-57421139 | MS.gene39882:intron | 30.0% | |
| AACACGAATAAAACACTGAA+TGG | - | chr1.4:57421358-57421377 | None:intergenic | 30.0% | |
| AAGGAGAAGGATTAAACATA+GGG | + | chr1.4:57421121-57421140 | MS.gene39882:intron | 30.0% | |
| AATGAATAGAGAAAAGGAGA+AGG | + | chr1.4:57421108-57421127 | MS.gene39882:intron | 30.0% | |
| AATGATATGGATTCTTCAAG+GGG | + | chr1.4:57422890-57422909 | MS.gene39882:CDS | 30.0% | |
| ATCATGCTCATCAATTTCAT+GGG | - | chr1.4:57421752-57421771 | None:intergenic | 30.0% | |
| ATCTTTCACCGATAATACAA+AGG | - | chr1.4:57421001-57421020 | None:intergenic | 30.0% | |
| ATTACATTGAGTATATGAGC+AGG | + | chr1.4:57421206-57421225 | MS.gene39882:intron | 30.0% | |
| ATTAGGAGTTCATTAAACTC+TGG | + | chr1.4:57422323-57422342 | MS.gene39882:intron | 30.0% | |
| ATTTATGTAGGGCAATGATA+TGG | + | chr1.4:57422877-57422896 | MS.gene39882:intron | 30.0% | |
| CAATGATATGGATTCTTCAA+GGG | + | chr1.4:57422889-57422908 | MS.gene39882:CDS | 30.0% | |
| CACATAAGTTATCTTTGTAC+AGG | - | chr1.4:57421880-57421899 | None:intergenic | 30.0% | |
| CTATCTGTTGGTATTTATGT+AGG | + | chr1.4:57422865-57422884 | MS.gene39882:intron | 30.0% | |
| CTTCACTTCCTTTGTATTAT+CGG | + | chr1.4:57420990-57421009 | MS.gene39882:intron | 30.0% | |
| GGAAATTGTGTTAGTGAATA+GGG | - | chr1.4:57422184-57422203 | None:intergenic | 30.0% | |
| GTATTATCGGTGAAAGATTA+GGG | + | chr1.4:57421003-57421022 | MS.gene39882:intron | 30.0% | |
| TATCATGCTCATCAATTTCA+TGG | - | chr1.4:57421753-57421772 | None:intergenic | 30.0% | |
| TATTGGTGAATTTCTCTTTG+AGG | + | chr1.4:57420676-57420695 | MS.gene39882:intron | 30.0% | |
| TGGAAAATCAAAAGAACAGT+AGG | - | chr1.4:57422353-57422372 | None:intergenic | 30.0% | |
| TGGAAATTGTGTTAGTGAAT+AGG | - | chr1.4:57422185-57422204 | None:intergenic | 30.0% | |
| TGTATTATCGGTGAAAGATT+AGG | + | chr1.4:57421002-57421021 | MS.gene39882:intron | 30.0% | |
| TGTTTATTACCTGACCATAT+TGG | + | chr1.4:57421597-57421616 | MS.gene39882:intron | 30.0% | |
| TTATTGTTAGAAAGTCTGTC+AGG | + | chr1.4:57422266-57422285 | MS.gene39882:intron | 30.0% | |
| TTTCTGCTTTAACTATCTGT+TGG | + | chr1.4:57422853-57422872 | MS.gene39882:intron | 30.0% | |
| ! | CAATGTTTGGTAACAAAGTT+CGG | + | chr1.4:57420934-57420953 | MS.gene39882:intron | 30.0% |
| ! | TAAACTCTGCAATTTTGTGA+TGG | + | chr1.4:57422662-57422681 | MS.gene39882:intron | 30.0% |
| ! | TGAATTCTAGAAGGTTAGTA+AGG | + | chr1.4:57420457-57420476 | MS.gene39882:intron | 30.0% |
| !! | CAGCTAGAAACAGTTTTAAT+GGG | + | chr1.4:57422705-57422724 | MS.gene39882:intron | 30.0% |
| !! | CGTCATTTTGTTTCAACTAT+TGG | + | chr1.4:57421914-57421933 | MS.gene39882:intron | 30.0% |
| !! | GTACAAGGAAGTATTCATAT+TGG | - | chr1.4:57421312-57421331 | None:intergenic | 30.0% |
| !! | TCAGCTAGAAACAGTTTTAA+TGG | + | chr1.4:57422704-57422723 | MS.gene39882:intron | 30.0% |
| !!! | AACCACTTTTTAATGATCAC+TGG | + | chr1.4:57420800-57420819 | MS.gene39882:intron | 30.0% |
| AAAATTATACCCTGTCCATC+CGG | + | chr1.4:57422107-57422126 | MS.gene39882:intron | 35.0% | |
| AACAAAGAACGTGCAATGTT+TGG | + | chr1.4:57420921-57420940 | MS.gene39882:intron | 35.0% | |
| AACATTGCACGTTCTTTGTT+AGG | - | chr1.4:57420921-57420940 | None:intergenic | 35.0% | |
| ACATTGCACGTTCTTTGTTA+GGG | - | chr1.4:57420920-57420939 | None:intergenic | 35.0% | |
| AGGAGAAGGATTAAACATAG+GGG | + | chr1.4:57421122-57421141 | MS.gene39882:intron | 35.0% | |
| AGTAAAGGATAACTTACTGC+AGG | + | chr1.4:57422005-57422024 | MS.gene39882:intron | 35.0% | |
| CAGTAAATTCCAATATGGTC+AGG | - | chr1.4:57421609-57421628 | None:intergenic | 35.0% | |
| CGAATTGAATAACAACCGAT+AGG | - | chr1.4:57420554-57420573 | None:intergenic | 35.0% | |
| CTAATAGAACCCAGGAATTT+AGG | - | chr1.4:57422430-57422449 | None:intergenic | 35.0% | |
| CTTAATGACATGGATAGACA+AGG | - | chr1.4:57421401-57421420 | None:intergenic | 35.0% | |
| CTTGTCTATCCATGTCATTA+AGG | + | chr1.4:57421399-57421418 | MS.gene39882:intron | 35.0% | |
| GATAATGAACAAGCAATGGA+TGG | + | chr1.4:57421769-57421788 | MS.gene39882:CDS | 35.0% | |
| GATAGACAAGGAAAAACTGA+AGG | - | chr1.4:57421389-57421408 | None:intergenic | 35.0% | |
| GCAATGATATGGATTCTTCA+AGG | + | chr1.4:57422888-57422907 | MS.gene39882:CDS | 35.0% | |
| GCTTTGTAAATTTATCCGGA+TGG | - | chr1.4:57422082-57422101 | None:intergenic | 35.0% | |
| TAAATTTATCCGGATGGACA+GGG | - | chr1.4:57422076-57422095 | None:intergenic | 35.0% | |
| TAGAATGGTAACCCATCATT+GGG | + | chr1.4:57422050-57422069 | MS.gene39882:intron | 35.0% | |
| TATCTTTGTACAGGATAGCT+AGG | - | chr1.4:57421871-57421890 | None:intergenic | 35.0% | |
| TCTGAATTCTAATAGAACCC+AGG | - | chr1.4:57422438-57422457 | None:intergenic | 35.0% | |
| TGAGCTCAAAACTCTTACAA+TGG | - | chr1.4:57422376-57422395 | None:intergenic | 35.0% | |
| TGCCAGTGATCATTAAAAAG+TGG | - | chr1.4:57420805-57420824 | None:intergenic | 35.0% | |
| TTAGAATGGTAACCCATCAT+TGG | + | chr1.4:57422049-57422068 | MS.gene39882:intron | 35.0% | |
| ! | AAAGAGCAACTCTGTTGTTT+CGG | - | chr1.4:57421672-57421691 | None:intergenic | 35.0% |
| ! | AACAGAGTTGCTCTTTTTGA+TGG | + | chr1.4:57421676-57421695 | MS.gene39882:CDS | 35.0% |
| ! | GCATGATAATGAACAAGCAA+TGG | + | chr1.4:57421765-57421784 | MS.gene39882:CDS | 35.0% |
| ! | TCTACAGGAAAAAGGGTTTT+AGG | - | chr1.4:57422581-57422600 | None:intergenic | 35.0% |
| !! | AAACTGTTTCTAGCTGATAC+AGG | - | chr1.4:57422701-57422720 | None:intergenic | 35.0% |
| !! | AACTGTTTCTAGCTGATACA+GGG | - | chr1.4:57422700-57422719 | None:intergenic | 35.0% |
| !! | AATGGATGGATTGCAAGATA+GGG | + | chr1.4:57421783-57421802 | MS.gene39882:CDS | 35.0% |
| !! | CTTTTTGATGGTATTGAGGA+GGG | + | chr1.4:57421688-57421707 | MS.gene39882:CDS | 35.0% |
| !! | TCTTTTTGATGGTATTGAGG+AGG | + | chr1.4:57421687-57421706 | MS.gene39882:CDS | 35.0% |
| !! | TGCTCTTTTTGATGGTATTG+AGG | + | chr1.4:57421684-57421703 | MS.gene39882:CDS | 35.0% |
| !! | TTGTTTCTGTTGGGAAGTAA+AGG | + | chr1.4:57421990-57422009 | MS.gene39882:intron | 35.0% |
| AAGATGTGATGCAGACATGA+AGG | - | chr1.4:57422464-57422483 | None:intergenic | 40.0% | |
| AATTTCATGGGAAGAAGCTG+AGG | - | chr1.4:57421740-57421759 | None:intergenic | 40.0% | |
| ACTTCGCTTACCTAAATTCC+TGG | + | chr1.4:57422417-57422436 | MS.gene39882:intron | 40.0% | |
| AGAATCTACATGCATGCATG+AGG | - | chr1.4:57421248-57421267 | None:intergenic | 40.0% | |
| AGCAGAGGAAATAGAAGAGA+GGG | + | chr1.4:57422217-57422236 | MS.gene39882:intron | 40.0% | |
| AGGAAATAGAAGAGAGGGAA+GGG | + | chr1.4:57422222-57422241 | MS.gene39882:intron | 40.0% | |
| ATTTGTCCATAGTTCCTGAG+AGG | - | chr1.4:57422919-57422938 | None:intergenic | 40.0% | |
| CTGGAAATTCGTGTTCCTAT+CGG | + | chr1.4:57420536-57420555 | MS.gene39882:intron | 40.0% | |
| CTTCGCTTACCTAAATTCCT+GGG | + | chr1.4:57422418-57422437 | MS.gene39882:intron | 40.0% | |
| GAAGGATTAAACATAGGGGA+AGG | + | chr1.4:57421126-57421145 | MS.gene39882:intron | 40.0% | |
| GAAGGGGTAAAGTTGTAATC+TGG | - | chr1.4:57421064-57421083 | None:intergenic | 40.0% | |
| GCTCAAAACTCTTACAATGG+TGG | - | chr1.4:57422373-57422392 | None:intergenic | 40.0% | |
| GTAAATTTATCCGGATGGAC+AGG | - | chr1.4:57422077-57422096 | None:intergenic | 40.0% | |
| GTCTATGGCATGTCAAGTAA+CGG | - | chr1.4:57421843-57421862 | None:intergenic | 40.0% | |
| TAATACTTGCTTCAGATCCG+TGG | + | chr1.4:57420593-57420612 | MS.gene39882:intron | 40.0% | |
| TAGCAGAGGAAATAGAAGAG+AGG | + | chr1.4:57422216-57422235 | MS.gene39882:intron | 40.0% | |
| TGTCCTATCAGGTTCATATC+CGG | - | chr1.4:57422129-57422148 | None:intergenic | 40.0% | |
| TTTGCGTGTGTTAAGAGTTG+AGG | + | chr1.4:57420729-57420748 | MS.gene39882:intron | 40.0% | |
| !! | AAGAGCAACTCTGTTGTTTC+GGG | - | chr1.4:57421671-57421690 | None:intergenic | 40.0% |
| !! | ACTGTTTCTAGCTGATACAG+GGG | - | chr1.4:57422699-57422718 | None:intergenic | 40.0% |
| !! | CAATGGATGGATTGCAAGAT+AGG | + | chr1.4:57421782-57421801 | MS.gene39882:CDS | 40.0% |
| !!! | TGCAGGAATTGTGTCGTTTT+TGG | + | chr1.4:57422022-57422041 | MS.gene39882:intron | 40.0% |
| AACACTGGTGACCCATCATT+GGG | + | chr1.4:57422158-57422177 | MS.gene39882:intron | 45.0% | |
| ACACCATATGATCCAGCATG+CGG | - | chr1.4:57422783-57422802 | None:intergenic | 45.0% | |
| AGAGTTGAGGTGGTGAATTG+TGG | + | chr1.4:57420742-57420761 | MS.gene39882:intron | 45.0% | |
| AGGTGATATACATGAGGAGG+TGG | + | chr1.4:57422747-57422766 | MS.gene39882:CDS | 45.0% | |
| AGGTGCATGCTAGTGTTCAT+TGG | + | chr1.4:57421146-57421165 | MS.gene39882:intron | 45.0% | |
| AGTGAATAGGGCCCAATGAT+GGG | - | chr1.4:57422172-57422191 | None:intergenic | 45.0% | |
| ATGAACCTGATAGGACACCA+AGG | + | chr1.4:57422132-57422151 | MS.gene39882:intron | 45.0% | |
| CATCCGGATATGAACCTGAT+AGG | + | chr1.4:57422123-57422142 | MS.gene39882:intron | 45.0% | |
| CCAGAAGATTGTAGTAGCAG+AGG | + | chr1.4:57422202-57422221 | MS.gene39882:intron | 45.0% | |
| CCTATGACGTCAAGTAGGAA+GGG | - | chr1.4:57421081-57421100 | None:intergenic | 45.0% | |
| CCTCTGCTACTACAATCTTC+TGG | - | chr1.4:57422205-57422224 | None:intergenic | 45.0% | |
| CGTCTACTACACAGTATCCA+CGG | - | chr1.4:57420613-57420632 | None:intergenic | 45.0% | |
| CGTGGATACTGTGTAGTAGA+CGG | + | chr1.4:57420611-57420630 | MS.gene39882:intron | 45.0% | |
| CTATCAGGTTCATATCCGGA+TGG | - | chr1.4:57422125-57422144 | None:intergenic | 45.0% | |
| CTATGACGTCAAGTAGGAAG+GGG | - | chr1.4:57421080-57421099 | None:intergenic | 45.0% | |
| CTTTGTACAGGATAGCTAGG+TGG | - | chr1.4:57421868-57421887 | None:intergenic | 45.0% | |
| GAGGAAATAGAAGAGAGGGA+AGG | + | chr1.4:57422221-57422240 | MS.gene39882:intron | 45.0% | |
| GCTGTCAGGTGATATACATG+AGG | + | chr1.4:57422741-57422760 | MS.gene39882:intron | 45.0% | |
| GGAAATAGAAGAGAGGGAAG+GGG | + | chr1.4:57422223-57422242 | MS.gene39882:intron | 45.0% | |
| GGATAATCATAACCGCATGC+TGG | + | chr1.4:57422768-57422787 | MS.gene39882:CDS | 45.0% | |
| GTCAGGTGATATACATGAGG+AGG | + | chr1.4:57422744-57422763 | MS.gene39882:CDS | 45.0% | |
| GTGGATACTGTGTAGTAGAC+GGG | + | chr1.4:57420612-57420631 | MS.gene39882:intron | 45.0% | |
| TAACCGCATGCTGGATCATA+TGG | + | chr1.4:57422777-57422796 | MS.gene39882:CDS | 45.0% | |
| TAGTGAATAGGGCCCAATGA+TGG | - | chr1.4:57422173-57422192 | None:intergenic | 45.0% | |
| TGAGGTGGTGAATTGTGGAT+AGG | + | chr1.4:57420747-57420766 | MS.gene39882:intron | 45.0% | |
| TGTTGCCTATGACGTCAAGT+AGG | - | chr1.4:57421086-57421105 | None:intergenic | 45.0% | |
| ! | GGAGAGTTACTCTCTGGTTT+AGG | + | chr1.4:57422287-57422306 | MS.gene39882:intron | 45.0% |
| ! | TTTGATGGTATTGAGGAGGG+TGG | + | chr1.4:57421691-57421710 | MS.gene39882:CDS | 45.0% |
| AGGTTCATATCCGGATGGAC+AGG | - | chr1.4:57422120-57422139 | None:intergenic | 50.0% | |
| CCCTTCCTACTTGACGTCAT+AGG | + | chr1.4:57421078-57421097 | MS.gene39882:intron | 50.0% | |
| CTGTCAGGAGAGTTACTCTC+TGG | + | chr1.4:57422281-57422300 | MS.gene39882:intron | 50.0% | |
| GAACACTGGTGACCCATCAT+TGG | + | chr1.4:57422157-57422176 | MS.gene39882:intron | 50.0% | |
| GATAGCTAGGTGGCAGTCTA+TGG | - | chr1.4:57421858-57421877 | None:intergenic | 50.0% | |
| GCCTATGACGTCAAGTAGGA+AGG | - | chr1.4:57421082-57421101 | None:intergenic | 50.0% | |
| GCGTGTGTTAAGAGTTGAGG+TGG | + | chr1.4:57420732-57420751 | MS.gene39882:intron | 50.0% | |
| GGTTCATATCCGGATGGACA+GGG | - | chr1.4:57422119-57422138 | None:intergenic | 50.0% | |
| GTCTGTTTGCAACAGCTGTC+AGG | + | chr1.4:57422727-57422746 | MS.gene39882:intron | 50.0% | |
| ! | ACTCTCTGGTTTAGGAGCTC+TGG | + | chr1.4:57422295-57422314 | MS.gene39882:intron | 50.0% |
| ! | TAGGAGCTCTGGTCTGGATT+AGG | + | chr1.4:57422306-57422325 | MS.gene39882:intron | 50.0% |
| !! | TTCGACCTTGGTGTCCTATC+AGG | - | chr1.4:57422140-57422159 | None:intergenic | 50.0% |
| AGGAAGTGAAGCTGCTCTGC+AGG | - | chr1.4:57420981-57421000 | None:intergenic | 55.0% | |
| AGGACACCAAGGTCGAACAC+TGG | + | chr1.4:57422143-57422162 | MS.gene39882:intron | 55.0% | |
| ATCATTGGGCCCTGTCCATC+CGG | + | chr1.4:57422064-57422083 | MS.gene39882:intron | 55.0% | |
| GATGGACAGGGCCCAATGAT+GGG | - | chr1.4:57422064-57422083 | None:intergenic | 55.0% | |
| GGGAGTCCTCTCAGGAACTA+TGG | + | chr1.4:57422910-57422929 | MS.gene39882:CDS | 55.0% | |
| TCTTCAAGGGGAGTCCTCTC+AGG | + | chr1.4:57422902-57422921 | MS.gene39882:CDS | 55.0% | |
| ! | CTGGTTTAGGAGCTCTGGTC+TGG | + | chr1.4:57422300-57422319 | MS.gene39882:intron | 55.0% |
| GAAGAGAGGGAAGGGGAGTG+AGG | + | chr1.4:57422230-57422249 | MS.gene39882:intron | 60.0% | |
| GGATGGACAGGGCCCAATGA+TGG | - | chr1.4:57422065-57422084 | None:intergenic | 60.0% | |
| GGGTCACCAGTGTTCGACCT+TGG | - | chr1.4:57422152-57422171 | None:intergenic | 60.0% | |
| TGCTCTGCAGGCAGAGACGT+AGG | - | chr1.4:57420969-57420988 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 57420456 | 57422958 | 57420456 | ID=MS.gene39882 |
| chr1.4 | mRNA | 57420456 | 57422958 | 57420456 | ID=MS.gene39882.t1;Parent=MS.gene39882 |
| chr1.4 | exon | 57420456 | 57420469 | 57420456 | ID=MS.gene39882.t1.exon1;Parent=MS.gene39882.t1 |
| chr1.4 | CDS | 57420456 | 57420469 | 57420456 | ID=cds.MS.gene39882.t1;Parent=MS.gene39882.t1 |
| chr1.4 | exon | 57421663 | 57421822 | 57421663 | ID=MS.gene39882.t1.exon2;Parent=MS.gene39882.t1 |
| chr1.4 | CDS | 57421663 | 57421822 | 57421663 | ID=cds.MS.gene39882.t1;Parent=MS.gene39882.t1 |
| chr1.4 | exon | 57422742 | 57422798 | 57422742 | ID=MS.gene39882.t1.exon3;Parent=MS.gene39882.t1 |
| chr1.4 | CDS | 57422742 | 57422798 | 57422742 | ID=cds.MS.gene39882.t1;Parent=MS.gene39882.t1 |
| chr1.4 | exon | 57422887 | 57422958 | 57422887 | ID=MS.gene39882.t1.exon4;Parent=MS.gene39882.t1 |
| chr1.4 | CDS | 57422887 | 57422958 | 57422887 | ID=cds.MS.gene39882.t1;Parent=MS.gene39882.t1 |
| Gene Sequence |
| Protein sequence |
