Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49320.t1 | KEH42571.1 | 99 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 7.90E-46 | 193 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49320.t1 | Q9M2J9 | 75.0 | 96 | 20 | 1 | 2 | 97 | 1 | 92 | 1.9e-32 | 139.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49320.t1 | A0A072VLR5 | 99.0 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 5.7e-46 | 193.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49320 | 0.862552 | 4.68E-64 | -1.69E-46 |
| MS.gene049159 | MS.gene49320 | 0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene49320 | 0.853041 | 3.11E-61 | -1.69E-46 |
| MS.gene04919 | MS.gene49320 | 0.801023 | 1.09E-48 | -1.69E-46 |
| MS.gene04920 | MS.gene49320 | 0.827939 | 1.19E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene49320 | 0.861992 | 6.94E-64 | -1.69E-46 |
| MS.gene049283 | MS.gene49320 | 0.81323 | 2.84E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene49320 | 0.826373 | 2.81E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene49320 | 0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene49320 | 0.845783 | 3.27E-59 | -1.69E-46 |
| MS.gene049419 | MS.gene49320 | -0.820126 | 8.09E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene49320 | 0.845838 | 3.16E-59 | -1.69E-46 |
| MS.gene049711 | MS.gene49320 | 0.829088 | 6.26E-55 | -1.69E-46 |
| MS.gene049821 | MS.gene49320 | 0.807104 | 5.95E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene49320 | 0.846695 | 1.85E-59 | -1.69E-46 |
| MS.gene050384 | MS.gene49320 | 0.810609 | 1.06E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene49320 | 0.847351 | 1.22E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene49320 | 0.844438 | 7.56E-59 | -1.69E-46 |
| MS.gene050562 | MS.gene49320 | 0.831373 | 1.73E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene49320 | 0.810565 | 1.08E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene49320 | 0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene49320 | 0.802201 | 6.28E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene49320 | 0.812124 | 4.96E-51 | -1.69E-46 |
| MS.gene051181 | MS.gene49320 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene49320 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene49320 | 0.818084 | 2.36E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene49320 | 0.818206 | 2.21E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene49320 | 0.816012 | 6.89E-52 | -1.69E-46 |
| MS.gene051363 | MS.gene49320 | 0.81208 | 5.07E-51 | -1.69E-46 |
| MS.gene051365 | MS.gene49320 | 0.802612 | 5.17E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene49320 | 0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene49320 | 0.841093 | 5.86E-58 | -1.69E-46 |
| MS.gene051856 | MS.gene49320 | 0.805502 | 1.29E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene49320 | 0.853214 | 2.77E-61 | -1.69E-46 |
| MS.gene052072 | MS.gene49320 | 0.84124 | 5.36E-58 | -1.69E-46 |
| MS.gene052108 | MS.gene49320 | 0.818336 | 2.07E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene49320 | -0.812022 | 5.22E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene49320 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene49320 | 0.808618 | 2.83E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene49320 | 0.822553 | 2.23E-53 | -1.69E-46 |
| MS.gene052518 | MS.gene49320 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene49320 | 0.874305 | 7.49E-68 | -1.69E-46 |
| MS.gene052533 | MS.gene49320 | 0.805015 | 1.64E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene49320 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene49320 | 0.821983 | 3.02E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene49320 | 0.830991 | 2.15E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene49320 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene49320 | 0.833218 | 6.05E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene49320 | 0.80656 | 7.75E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene49320 | 0.810566 | 1.08E-50 | -1.69E-46 |
| MS.gene053146 | MS.gene49320 | 0.80783 | 4.17E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene49320 | 0.852568 | 4.24E-61 | -1.69E-46 |
| MS.gene053272 | MS.gene49320 | -0.849344 | 3.44E-60 | -1.69E-46 |
| MS.gene053541 | MS.gene49320 | 0.809177 | 2.15E-50 | -1.69E-46 |
| MS.gene053542 | MS.gene49320 | 0.821173 | 4.65E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene49320 | 0.843959 | 1.02E-58 | -1.69E-46 |
| MS.gene053931 | MS.gene49320 | 0.853509 | 2.28E-61 | -1.69E-46 |
| MS.gene054142 | MS.gene49320 | 0.832367 | 9.84E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene49320 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene49320 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene49320 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene49320 | 0.81058 | 1.07E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene49320 | 0.849985 | 2.28E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene49320 | 0.85753 | 1.53E-62 | -1.69E-46 |
| MS.gene054709 | MS.gene49320 | 0.817961 | 2.51E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene49320 | 0.811991 | 5.31E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene49320 | 0.837101 | 6.34E-57 | -1.69E-46 |
| MS.gene055228 | MS.gene49320 | 0.824446 | 8.04E-54 | -1.69E-46 |
| MS.gene055464 | MS.gene49320 | 0.831808 | 1.35E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene49320 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene49320 | 0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene49320 | 0.80837 | 3.20E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene49320 | 0.824567 | 7.53E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene49320 | 0.856645 | 2.80E-62 | -1.69E-46 |
| MS.gene055841 | MS.gene49320 | 0.836388 | 9.64E-57 | -1.69E-46 |
| MS.gene056045 | MS.gene49320 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene49320 | 0.821022 | 5.03E-53 | -1.69E-46 |
| MS.gene056162 | MS.gene49320 | 0.819283 | 1.26E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene49320 | 0.811259 | 7.66E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene49320 | 0.821413 | 4.09E-53 | -1.69E-46 |
| MS.gene056254 | MS.gene49320 | 0.801309 | 9.57E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene49320 | 0.823033 | 1.72E-53 | -1.69E-46 |
| MS.gene056363 | MS.gene49320 | 0.811146 | 8.10E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene49320 | 0.837467 | 5.11E-57 | -1.69E-46 |
| MS.gene056595 | MS.gene49320 | 0.826597 | 2.49E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene49320 | 0.86999 | 2.05E-66 | -1.69E-46 |
| MS.gene056776 | MS.gene49320 | 0.834671 | 2.62E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene49320 | 0.870835 | 1.08E-66 | -1.69E-46 |
| MS.gene05690 | MS.gene49320 | 0.825438 | 4.69E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene49320 | 0.836462 | 9.23E-57 | -1.69E-46 |
| MS.gene057034 | MS.gene49320 | 0.820046 | 8.43E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene49320 | 0.86355 | 2.30E-64 | -1.69E-46 |
| MS.gene057132 | MS.gene49320 | 0.821379 | 4.17E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene49320 | 0.884591 | 1.68E-71 | -1.69E-46 |
| MS.gene057392 | MS.gene49320 | 0.814961 | 1.18E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene49320 | 0.830111 | 3.53E-55 | -1.69E-46 |
| MS.gene057611 | MS.gene49320 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene49320 | 0.837186 | 6.03E-57 | -1.69E-46 |
| MS.gene057694 | MS.gene49320 | 0.83588 | 1.30E-56 | -1.69E-46 |
| MS.gene057855 | MS.gene49320 | 0.86869 | 5.41E-66 | -1.69E-46 |
| MS.gene057915 | MS.gene49320 | 0.801649 | 8.15E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene49320 | 0.863246 | 2.86E-64 | -1.69E-46 |
| MS.gene058009 | MS.gene49320 | 0.867911 | 9.65E-66 | -1.69E-46 |
| MS.gene058010 | MS.gene49320 | 0.827976 | 1.16E-54 | -1.69E-46 |
| MS.gene058088 | MS.gene49320 | 0.842709 | 2.19E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene49320 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene49320 | 0.804361 | 2.24E-49 | -1.69E-46 |
| MS.gene058355 | MS.gene49320 | 0.815646 | 8.31E-52 | -1.69E-46 |
| MS.gene058427 | MS.gene49320 | 0.809903 | 1.50E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene49320 | 0.818698 | 1.71E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene49320 | 0.82579 | 3.87E-54 | -1.69E-46 |
| MS.gene058634 | MS.gene49320 | 0.814445 | 1.53E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene49320 | 0.857805 | 1.27E-62 | -1.69E-46 |
| MS.gene058783 | MS.gene49320 | 0.879683 | 1.02E-69 | -1.69E-46 |
| MS.gene058979 | MS.gene49320 | 0.856962 | 2.26E-62 | -1.69E-46 |
| MS.gene05897 | MS.gene49320 | 0.822798 | 1.95E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene49320 | 0.840472 | 8.52E-58 | -1.69E-46 |
| MS.gene059151 | MS.gene49320 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene49320 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene49320 | 0.808598 | 2.86E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene49320 | 0.828456 | 8.90E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene49320 | -0.849378 | 3.36E-60 | -1.69E-46 |
| MS.gene060244 | MS.gene49320 | 0.856941 | 2.29E-62 | -1.69E-46 |
| MS.gene060365 | MS.gene49320 | 0.83589 | 1.29E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene49320 | 0.809926 | 1.49E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene49320 | 0.811384 | 7.19E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene49320 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene49320 | 0.826695 | 2.36E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene49320 | 0.903892 | 2.17E-79 | -1.69E-46 |
| MS.gene060937 | MS.gene49320 | 0.891966 | 2.45E-74 | -1.69E-46 |
| MS.gene061100 | MS.gene49320 | 0.824631 | 7.27E-54 | -1.69E-46 |
| MS.gene061135 | MS.gene49320 | 0.808315 | 3.29E-50 | -1.69E-46 |
| MS.gene061160 | MS.gene49320 | 0.81768 | 2.91E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene49320 | 0.827981 | 1.16E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49320.t1 | MTR_1g070240 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 3.89e-66 | 196 |
| MS.gene49320.t1 | MTR_1g070240 | 98.980 | 98 | 1 | 0 | 1 | 98 | 1 | 98 | 6.45e-66 | 194 |
| MS.gene49320.t1 | MTR_1g070240 | 98.333 | 60 | 1 | 0 | 1 | 60 | 1 | 60 | 5.96e-37 | 120 |
| MS.gene49320.t1 | MTR_1g044145 | 65.432 | 81 | 24 | 1 | 17 | 97 | 19 | 95 | 6.80e-31 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49320.t1 | AT3G58170 | 75.000 | 96 | 20 | 1 | 2 | 97 | 1 | 92 | 5.44e-46 | 145 |
| MS.gene49320.t1 | AT4G14455 | 56.000 | 100 | 35 | 2 | 2 | 98 | 1 | 94 | 4.09e-34 | 115 |
Find 29 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGCAACTCTGTTGTTTC+GGG | 0.248402 | 1.1:-52602506 | None:intergenic |
| AAAGAGCAACTCTGTTGTTT+CGG | 0.302142 | 1.1:-52602507 | None:intergenic |
| CAATGGATGGATTGCAAGAT+AGG | 0.310657 | 1.1:+52602620 | MS.gene49320:CDS |
| ATTTATGTAGGGCAATGATA+TGG | 0.322400 | 1.1:+52603715 | MS.gene49320:intron |
| TATCATGCTCATCAATTTCA+TGG | 0.334184 | 1.1:-52602588 | None:intergenic |
| AACTATGGACAAATTCAAAA+TGG | 0.341736 | 1.1:+52603763 | MS.gene49320:CDS |
| TGTAAGATCTCCGTTCAATA+TGG | 0.350442 | 1.1:-52605843 | None:intergenic |
| GGGAGTCCTCTCAGGAACTA+TGG | 0.404717 | 1.1:+52603748 | MS.gene49320:CDS |
| ATGAAGCTATGATGTTGAAT+AGG | 0.426602 | 1.1:+52605873 | MS.gene49320:CDS |
| TAACCGCATGCTGGATCATA+TGG | 0.436740 | 1.1:+52603615 | MS.gene49320:CDS |
| TCTTCAAGGGGAGTCCTCTC+AGG | 0.438524 | 1.1:+52603740 | MS.gene49320:CDS |
| GAGATATGATGAATTCTAGA+AGG | 0.474589 | 1.1:+52601278 | None:intergenic |
| GCAATGATATGGATTCTTCA+AGG | 0.476199 | 1.1:+52603726 | MS.gene49320:CDS |
| GTCTGTTTGCAACAGCTGTC+AGG | 0.490064 | 1.1:+52603565 | MS.gene49320:intron |
| GGATAATCATAACCGCATGC+TGG | 0.533691 | 1.1:+52603606 | MS.gene49320:CDS |
| TTTGATGGTATTGAGGAGGG+TGG | 0.537955 | 1.1:+52602529 | MS.gene49320:CDS |
| GATAATGAACAAGCAATGGA+TGG | 0.545746 | 1.1:+52602607 | MS.gene49320:CDS |
| ATCATGCTCATCAATTTCAT+GGG | 0.551837 | 1.1:-52602587 | None:intergenic |
| AGGTGATATACATGAGGAGG+TGG | 0.560404 | 1.1:+52603585 | MS.gene49320:CDS |
| GCTTTATAGTCCATATTGAA+CGG | 0.561829 | 1.1:+52605833 | MS.gene49320:intron |
| CAATGATATGGATTCTTCAA+GGG | 0.571816 | 1.1:+52603727 | MS.gene49320:CDS |
| AATGGATGGATTGCAAGATA+GGG | 0.574154 | 1.1:+52602621 | MS.gene49320:CDS |
| GCATGATAATGAACAAGCAA+TGG | 0.600126 | 1.1:+52602603 | MS.gene49320:CDS |
| AATTTCATGGGAAGAAGCTG+AGG | 0.635387 | 1.1:-52602575 | None:intergenic |
| AATGATATGGATTCTTCAAG+GGG | 0.638351 | 1.1:+52603728 | MS.gene49320:CDS |
| ATTTGTCCATAGTTCCTGAG+AGG | 0.647858 | 1.1:-52603754 | None:intergenic |
| GTCAGGTGATATACATGAGG+AGG | 0.657694 | 1.1:+52603582 | MS.gene49320:CDS |
| GCTGTCAGGTGATATACATG+AGG | 0.690650 | 1.1:+52603579 | MS.gene49320:intron |
| ACACCATATGATCCAGCATG+CGG | 0.718029 | 1.1:-52603618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAATTAATAATCAATAAT+AGG | + | chr1.1:52602010-52602029 | MS.gene49320:intron | 10.0% |
| !! | AATAACAGATTAATTAGAAA+AGG | - | chr1.1:52601339-52601358 | None:intergenic | 15.0% |
| !! | ATTAAATATTTGATCATAAG+AGG | - | chr1.1:52604116-52604135 | None:intergenic | 15.0% |
| !! | CTGTAATTATAATATCTATT+TGG | + | chr1.1:52603391-52603410 | MS.gene49320:intron | 15.0% |
| !!! | AATATTTAATTTTCTGTGTA+TGG | + | chr1.1:52604126-52604145 | MS.gene49320:intron | 15.0% |
| !! | AAATTAAACAGTGATATCTT+AGG | - | chr1.1:52602323-52602342 | None:intergenic | 20.0% |
| !! | AACAAAAATGAATAGAGAAA+AGG | + | chr1.1:52601940-52601959 | MS.gene49320:intron | 20.0% |
| !! | ATGAATAATTCTGATAAACA+TGG | - | chr1.1:52603325-52603344 | None:intergenic | 20.0% |
| !! | ATTTCCTAAGATAGAATATT+TGG | + | chr1.1:52605356-52605375 | MS.gene49320:intron | 20.0% |
| !! | GAAACAATATCATATAAACA+AGG | - | chr1.1:52602815-52602834 | None:intergenic | 20.0% |
| !! | TGATATATTTCTCTAACATT+TGG | - | chr1.1:52605456-52605475 | None:intergenic | 20.0% |
| !! | TTATCATTTACTATCTAACT+AGG | + | chr1.1:52604224-52604243 | MS.gene49320:intron | 20.0% |
| !!! | AGTGTTTTATTGAATGTAAA+TGG | - | chr1.1:52603238-52603257 | None:intergenic | 20.0% |
| !!! | ATATTTTCGAAATCAAACAA+TGG | + | chr1.1:52604741-52604760 | MS.gene49320:intron | 20.0% |
| !!! | CTTGATATTTTATGCAATTA+TGG | + | chr1.1:52602345-52602364 | MS.gene49320:intron | 20.0% |
| !!! | TATATGATATTGTTTCTGTT+GGG | + | chr1.1:52602819-52602838 | MS.gene49320:intron | 20.0% |
| !!! | TTATATGATATTGTTTCTGT+TGG | + | chr1.1:52602818-52602837 | MS.gene49320:intron | 20.0% |
| !!! | TTTTGATATGTGTGATTTAT+TGG | + | chr1.1:52601480-52601499 | MS.gene49320:intron | 20.0% |
| ! | AAATCTTAAACTGATCAACA+TGG | - | chr1.1:52604774-52604793 | None:intergenic | 25.0% |
| ! | AACTATGGACAAATTCAAAA+TGG | + | chr1.1:52603763-52603782 | MS.gene49320:CDS | 25.0% |
| ! | AAGATCTTTAAATAGTCTAC+AGG | - | chr1.1:52603434-52603453 | None:intergenic | 25.0% |
| ! | ACAAATTTGTCACAAATATG+AGG | + | chr1.1:52602110-52602129 | MS.gene49320:intron | 25.0% |
| ! | ACAGTTATGCAAAAAATAAG+TGG | - | chr1.1:52605313-52605332 | None:intergenic | 25.0% |
| ! | ATCTTTATACAGACACATAA+CGG | - | chr1.1:52604343-52604362 | None:intergenic | 25.0% |
| ! | ATGATTTAATGACATGTACA+AGG | - | chr1.1:52602165-52602184 | None:intergenic | 25.0% |
| ! | GATAAGAAAAATCACAACAA+AGG | - | chr1.1:52604209-52604228 | None:intergenic | 25.0% |
| ! | TAAATAGTCTACAGGAAAAA+GGG | - | chr1.1:52603426-52603445 | None:intergenic | 25.0% |
| ! | TAATAACTTGATTGATGCAA+CGG | + | chr1.1:52604542-52604561 | MS.gene49320:intron | 25.0% |
| ! | TATCTGTTGGTATTTATGTA+GGG | + | chr1.1:52603704-52603723 | MS.gene49320:intron | 25.0% |
| ! | TCAAATAAACCTTAATGACA+TGG | - | chr1.1:52602249-52602268 | None:intergenic | 25.0% |
| ! | TTAAATAGTCTACAGGAAAA+AGG | - | chr1.1:52603427-52603446 | None:intergenic | 25.0% |
| ! | TTTGCTTTCCTTTATTGTTT+GGG | + | chr1.1:52604051-52604070 | MS.gene49320:intron | 25.0% |
| !! | ATTTACCATTCAGTTCTTTT+TGG | - | chr1.1:52604595-52604614 | None:intergenic | 25.0% |
| !! | CAAAGCTTTGTAAATTTATC+CGG | - | chr1.1:52602924-52602943 | None:intergenic | 25.0% |
| !! | CTATTGATATTTTCTCATAC+AGG | - | chr1.1:52605411-52605430 | None:intergenic | 25.0% |
| !! | TTTTGCTTTCCTTTATTGTT+TGG | + | chr1.1:52604050-52604069 | MS.gene49320:intron | 25.0% |
| !!! | ATCTTTATATGACGGATTTA+TGG | + | chr1.1:52603926-52603945 | MS.gene49320:intron | 25.0% |
| !!! | ATTAAATCATTCGGATTAGT+CGG | - | chr1.1:52605586-52605605 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTCATTTTGGAA+TGG | + | chr1.1:52601519-52601538 | MS.gene49320:intron | 25.0% |
| !!! | TCGTTTTTGGTTTATTAGAA+TGG | + | chr1.1:52602873-52602892 | MS.gene49320:intron | 25.0% |
| !!! | TTAAGGAGTATTTCTTTTAG+AGG | - | chr1.1:52605797-52605816 | None:intergenic | 25.0% |
| !!! | TTGAGGTTTTGTTTTCATTT+TGG | + | chr1.1:52601514-52601533 | MS.gene49320:intron | 25.0% |
| !!! | TTGCTTCTTTGTTTTTTGAA+AGG | + | chr1.1:52604793-52604812 | MS.gene49320:intron | 25.0% |
| AAAACAAGACACTATGAAGT+TGG | + | chr1.1:52604712-52604731 | MS.gene49320:intron | 30.0% | |
| AAAGGAGAAGGATTAAACAT+AGG | + | chr1.1:52601958-52601977 | MS.gene49320:intron | 30.0% | |
| AAATAGACTTCTAACAAACC+CGG | - | chr1.1:52605746-52605765 | None:intergenic | 30.0% | |
| AACACGAATAAAACACTGAA+TGG | - | chr1.1:52602196-52602215 | None:intergenic | 30.0% | |
| AAGGAGAAGGATTAAACATA+GGG | + | chr1.1:52601959-52601978 | MS.gene49320:intron | 30.0% | |
| AATGAATAGAGAAAAGGAGA+AGG | + | chr1.1:52601946-52601965 | MS.gene49320:intron | 30.0% | |
| AATGATATGGATTCTTCAAG+GGG | + | chr1.1:52603728-52603747 | MS.gene49320:CDS | 30.0% | |
| AGAATATCCTTATGAAGAGA+TGG | - | chr1.1:52605507-52605526 | None:intergenic | 30.0% | |
| ATATCATAACCCAAAGCATA+AGG | + | chr1.1:52604832-52604851 | MS.gene49320:intron | 30.0% | |
| ATCATGCTCATCAATTTCAT+GGG | - | chr1.1:52602590-52602609 | None:intergenic | 30.0% | |
| ATCTTTCACCGATAATACAA+AGG | - | chr1.1:52601839-52601858 | None:intergenic | 30.0% | |
| ATGAAGCTATGATGTTGAAT+AGG | + | chr1.1:52605873-52605892 | MS.gene49320:CDS | 30.0% | |
| ATGCTTATAACCAAATCAAG+AGG | - | chr1.1:52605338-52605357 | None:intergenic | 30.0% | |
| ATTACATTGAGTATATGAGC+AGG | + | chr1.1:52602044-52602063 | MS.gene49320:intron | 30.0% | |
| ATTAGGAGTTCATTAAACTC+TGG | + | chr1.1:52603161-52603180 | MS.gene49320:intron | 30.0% | |
| ATTTATGTAGGGCAATGATA+TGG | + | chr1.1:52603715-52603734 | MS.gene49320:intron | 30.0% | |
| CAATGAATGATAAGAACACT+TGG | + | chr1.1:52604466-52604485 | MS.gene49320:intron | 30.0% | |
| CAATGATATGGATTCTTCAA+GGG | + | chr1.1:52603727-52603746 | MS.gene49320:CDS | 30.0% | |
| CACATAAGTTATCTTTGTAC+AGG | - | chr1.1:52602718-52602737 | None:intergenic | 30.0% | |
| CTATCTGTTGGTATTTATGT+AGG | + | chr1.1:52603703-52603722 | MS.gene49320:intron | 30.0% | |
| CTTCACTTCCTTTGTATTAT+CGG | + | chr1.1:52601828-52601847 | MS.gene49320:intron | 30.0% | |
| GAAAACAGTAAAGTCCAATA+TGG | - | chr1.1:52602452-52602471 | None:intergenic | 30.0% | |
| GAGACCAAATATTCTATCTT+AGG | - | chr1.1:52605363-52605382 | None:intergenic | 30.0% | |
| GCTTTATAGTCCATATTGAA+CGG | + | chr1.1:52605833-52605852 | MS.gene49320:intron | 30.0% | |
| GGAAATTGTGTTAGTGAATA+GGG | - | chr1.1:52603022-52603041 | None:intergenic | 30.0% | |
| GTAAAAGGATAGAGATAAGT+TGG | - | chr1.1:52605482-52605501 | None:intergenic | 30.0% | |
| GTATTATCGGTGAAAGATTA+GGG | + | chr1.1:52601841-52601860 | MS.gene49320:intron | 30.0% | |
| TAACAAGTGCGTAAACTAAA+TGG | - | chr1.1:52604028-52604047 | None:intergenic | 30.0% | |
| TATCATAACCCAAAGCATAA+GGG | + | chr1.1:52604833-52604852 | MS.gene49320:intron | 30.0% | |
| TATCATGCTCATCAATTTCA+TGG | - | chr1.1:52602591-52602610 | None:intergenic | 30.0% | |
| TATTGGTGAATTTCTCTTTG+AGG | + | chr1.1:52601497-52601516 | MS.gene49320:intron | 30.0% | |
| TGGAAAATCAAAAGAACAGT+AGG | - | chr1.1:52603191-52603210 | None:intergenic | 30.0% | |
| TGGAAATTGTGTTAGTGAAT+AGG | - | chr1.1:52603023-52603042 | None:intergenic | 30.0% | |
| TGTATTATCGGTGAAAGATT+AGG | + | chr1.1:52601840-52601859 | MS.gene49320:intron | 30.0% | |
| TGTTTATTACCTGACCATAT+TGG | + | chr1.1:52602435-52602454 | MS.gene49320:intron | 30.0% | |
| TTATTGTTAGAAAGTCTGTC+AGG | + | chr1.1:52603104-52603123 | MS.gene49320:intron | 30.0% | |
| TTCTCATACAGGTTATGATT+GGG | - | chr1.1:52605400-52605419 | None:intergenic | 30.0% | |
| TTGATGTTGAATCTGAAAGA+AGG | + | chr1.1:52604270-52604289 | MS.gene49320:intron | 30.0% | |
| TTTCATATTCGTGTTCCTAT+CGG | + | chr1.1:52601357-52601376 | MS.gene49320:intron | 30.0% | |
| TTTCTCATACAGGTTATGAT+TGG | - | chr1.1:52605401-52605420 | None:intergenic | 30.0% | |
| ! | ATTGTTCCAGTGTTGTTAAA+TGG | + | chr1.1:52603796-52603815 | MS.gene49320:intron | 30.0% |
| ! | TAAACTCTGCAATTTTGTGA+TGG | + | chr1.1:52603500-52603519 | MS.gene49320:intron | 30.0% |
| ! | TGAATTCTAGAAGGTTAGTA+AGG | + | chr1.1:52601287-52601306 | MS.gene49320:intron | 30.0% |
| ! | TGTCATTTCCCAAACAATAA+AGG | - | chr1.1:52604062-52604081 | None:intergenic | 30.0% |
| ! | TTTTTCTCCCTTTCTAATCA+TGG | + | chr1.1:52604654-52604673 | MS.gene49320:intron | 30.0% |
| !! | AGCTTTGTTCAGACTTAAAT+GGG | - | chr1.1:52605630-52605649 | None:intergenic | 30.0% |
| !! | CAGCTAGAAACAGTTTTAAT+GGG | + | chr1.1:52603543-52603562 | MS.gene49320:intron | 30.0% |
| !! | CGTCATTTTGTTTCAACTAT+TGG | + | chr1.1:52602752-52602771 | MS.gene49320:intron | 30.0% |
| !! | GTACAAGGAAGTATTCATAT+TGG | - | chr1.1:52602150-52602169 | None:intergenic | 30.0% |
| !! | TCAGCTAGAAACAGTTTTAA+TGG | + | chr1.1:52603542-52603561 | MS.gene49320:intron | 30.0% |
| AAAATTATACCCTGTCCATC+CGG | + | chr1.1:52602945-52602964 | MS.gene49320:intron | 35.0% | |
| AAATCAAACCGTACGGATTT+GGG | + | chr1.1:52604503-52604522 | MS.gene49320:intron | 35.0% | |
| AAATGGAATTGATCCTTCAG+AGG | - | chr1.1:52604011-52604030 | None:intergenic | 35.0% | |
| AACAAAGAACGTGCAATGTT+TGG | + | chr1.1:52601759-52601778 | MS.gene49320:intron | 35.0% | |
| AACATTGCACGTTCTTTGTT+AGG | - | chr1.1:52601759-52601778 | None:intergenic | 35.0% | |
| AATGGAATTGATCCTTCAGA+GGG | - | chr1.1:52604010-52604029 | None:intergenic | 35.0% | |
| AATTTGGGCCATGATTAGAA+AGG | - | chr1.1:52604665-52604684 | None:intergenic | 35.0% | |
| ACATTGCACGTTCTTTGTTA+GGG | - | chr1.1:52601758-52601777 | None:intergenic | 35.0% | |
| ACCTTAAATCAGCAACGAAT+CGG | - | chr1.1:52604691-52604710 | None:intergenic | 35.0% | |
| AGGAGAAGGATTAAACATAG+GGG | + | chr1.1:52601960-52601979 | MS.gene49320:intron | 35.0% | |
| AGTAAAGGATAACTTACTGC+AGG | + | chr1.1:52602843-52602862 | MS.gene49320:intron | 35.0% | |
| ATAACTGTAGCCTCTTGATT+TGG | + | chr1.1:52605325-52605344 | MS.gene49320:intron | 35.0% | |
| ATGAAAGCTTTCCAAACTGA+AGG | - | chr1.1:52604412-52604431 | None:intergenic | 35.0% | |
| ATTCCTTCACATATTGCCTA+TGG | - | chr1.1:52603873-52603892 | None:intergenic | 35.0% | |
| ATTTGGGCCATGATTAGAAA+GGG | - | chr1.1:52604664-52604683 | None:intergenic | 35.0% | |
| CAACAAAAAGCAAATAGCAC+TGG | + | chr1.1:52605123-52605142 | MS.gene49320:intron | 35.0% | |
| CAAGATCAGTTACACTGTTA+AGG | - | chr1.1:52605814-52605833 | None:intergenic | 35.0% | |
| CGAATTGAATAACAACCGAT+AGG | - | chr1.1:52601375-52601394 | None:intergenic | 35.0% | |
| CTAATAGAACCCAGGAATTT+AGG | - | chr1.1:52603268-52603287 | None:intergenic | 35.0% | |
| CTTAATGACATGGATAGACA+AGG | - | chr1.1:52602239-52602258 | None:intergenic | 35.0% | |
| CTTGTCTATCCATGTCATTA+AGG | + | chr1.1:52602237-52602256 | MS.gene49320:intron | 35.0% | |
| GAAATGACAACACATTGATG+GGG | + | chr1.1:52604073-52604092 | MS.gene49320:intron | 35.0% | |
| GAAATTGTTAGAACAACGAC+TGG | + | chr1.1:52601706-52601725 | MS.gene49320:intron | 35.0% | |
| GAACTATCCAATGTTGTTGA+TGG | - | chr1.1:52603961-52603980 | None:intergenic | 35.0% | |
| GATAATGAACAAGCAATGGA+TGG | + | chr1.1:52602607-52602626 | MS.gene49320:CDS | 35.0% | |
| GATAGACAAGGAAAAACTGA+AGG | - | chr1.1:52602227-52602246 | None:intergenic | 35.0% | |
| GCAATGATATGGATTCTTCA+AGG | + | chr1.1:52603726-52603745 | MS.gene49320:CDS | 35.0% | |
| GCTTTGTAAATTTATCCGGA+TGG | - | chr1.1:52602920-52602939 | None:intergenic | 35.0% | |
| GGAAATGACAACACATTGAT+GGG | + | chr1.1:52604072-52604091 | MS.gene49320:intron | 35.0% | |
| TAAATTTATCCGGATGGACA+GGG | - | chr1.1:52602914-52602933 | None:intergenic | 35.0% | |
| TACAGGTTATGATTGGGATA+AGG | - | chr1.1:52605394-52605413 | None:intergenic | 35.0% | |
| TAGAATGGTAACCCATCATT+GGG | + | chr1.1:52602888-52602907 | MS.gene49320:intron | 35.0% | |
| TATCTTTGTACAGGATAGCT+AGG | - | chr1.1:52602709-52602728 | None:intergenic | 35.0% | |
| TATGAAGAGATGGCTGTAAA+AGG | - | chr1.1:52605497-52605516 | None:intergenic | 35.0% | |
| TCTCTAACATTTGGACAGTA+TGG | - | chr1.1:52605447-52605466 | None:intergenic | 35.0% | |
| TCTCTGCTTTAACTATCTGT+TGG | + | chr1.1:52603691-52603710 | MS.gene49320:intron | 35.0% | |
| TCTGAATTCTAATAGAACCC+AGG | - | chr1.1:52603276-52603295 | None:intergenic | 35.0% | |
| TCTTAAACTGATCAACATGG+AGG | - | chr1.1:52604771-52604790 | None:intergenic | 35.0% | |
| TGAGCTCAAAACTCTTACAA+TGG | - | chr1.1:52603214-52603233 | None:intergenic | 35.0% | |
| TGTAAGATCTCCGTTCAATA+TGG | - | chr1.1:52605846-52605865 | None:intergenic | 35.0% | |
| TTAGAATGGTAACCCATCAT+TGG | + | chr1.1:52602887-52602906 | MS.gene49320:intron | 35.0% | |
| TTATGATTGGGATAAGGTTG+CGG | - | chr1.1:52605388-52605407 | None:intergenic | 35.0% | |
| TTCACATGTGAATGCATAAC+AGG | - | chr1.1:52605098-52605117 | None:intergenic | 35.0% | |
| TTCCTTCACATATTGCCTAT+GGG | - | chr1.1:52603872-52603891 | None:intergenic | 35.0% | |
| TTTACAGCCATCTCTTCATA+AGG | + | chr1.1:52605497-52605516 | MS.gene49320:intron | 35.0% | |
| ! | AAAGAGCAACTCTGTTGTTT+CGG | - | chr1.1:52602510-52602529 | None:intergenic | 35.0% |
| ! | AACAGAGTTGCTCTTTTTGA+TGG | + | chr1.1:52602514-52602533 | MS.gene49320:CDS | 35.0% |
| ! | ATGGACTAACTCATCGAAAT+TGG | + | chr1.1:52605654-52605673 | MS.gene49320:intron | 35.0% |
| ! | ATTCAGTTCTTTTTGGACGA+GGG | - | chr1.1:52604588-52604607 | None:intergenic | 35.0% |
| ! | CAAAGTATCCCTTATGCTTT+GGG | - | chr1.1:52604844-52604863 | None:intergenic | 35.0% |
| ! | CAATGTTTGGTGACAAAGTT+CGG | + | chr1.1:52601772-52601791 | MS.gene49320:intron | 35.0% |
| ! | CTTCAGAGGGCATATATATA+GGG | - | chr1.1:52603997-52604016 | None:intergenic | 35.0% |
| ! | GCATGATAATGAACAAGCAA+TGG | + | chr1.1:52602603-52602622 | MS.gene49320:CDS | 35.0% |
| ! | GCTTTGTTCAGACTTAAATG+GGG | - | chr1.1:52605629-52605648 | None:intergenic | 35.0% |
| ! | TCTACAGGAAAAAGGGTTTT+AGG | - | chr1.1:52603419-52603438 | None:intergenic | 35.0% |
| !! | AAACTGTTTCTAGCTGATAC+AGG | - | chr1.1:52603539-52603558 | None:intergenic | 35.0% |
| !! | AACTGTTTCTAGCTGATACA+GGG | - | chr1.1:52603538-52603557 | None:intergenic | 35.0% |
| !! | AATGGATGGATTGCAAGATA+GGG | + | chr1.1:52602621-52602640 | MS.gene49320:CDS | 35.0% |
| !! | CTGAATCCTTTGAGTTGTTT+GGG | - | chr1.1:52605287-52605306 | None:intergenic | 35.0% |
| !! | CTTTTTGATGGTATTGAGGA+GGG | + | chr1.1:52602526-52602545 | MS.gene49320:CDS | 35.0% |
| !! | GAGCTTTGTTCAGACTTAAA+TGG | - | chr1.1:52605631-52605650 | None:intergenic | 35.0% |
| !! | GATGGTGGGATTAAATCATT+CGG | - | chr1.1:52605595-52605614 | None:intergenic | 35.0% |
| !! | GGAGTATTTCTTTTAGAGGT+AGG | - | chr1.1:52605793-52605812 | None:intergenic | 35.0% |
| !! | GGTTGAGTGTTTTTATCTCA+AGG | - | chr1.1:52605703-52605722 | None:intergenic | 35.0% |
| !! | TCTGAATCCTTTGAGTTGTT+TGG | - | chr1.1:52605288-52605307 | None:intergenic | 35.0% |
| !! | TCTTTTTGATGGTATTGAGG+AGG | + | chr1.1:52602525-52602544 | MS.gene49320:CDS | 35.0% |
| !! | TGCTCTTTTTGATGGTATTG+AGG | + | chr1.1:52602522-52602541 | MS.gene49320:CDS | 35.0% |
| !! | TTGTTTCTGTTGGGAAGTAA+AGG | + | chr1.1:52602828-52602847 | MS.gene49320:intron | 35.0% |
| !!! | AACCACTTTTTAACGATCAC+TGG | + | chr1.1:52601622-52601641 | MS.gene49320:intron | 35.0% |
| !!! | CATAACAGGTTTTGATTGCA+GGG | - | chr1.1:52605084-52605103 | None:intergenic | 35.0% |
| AAGATGTGATGCAGACATGA+AGG | - | chr1.1:52603302-52603321 | None:intergenic | 40.0% | |
| AAGCTTTCCAAACTGAAGGA+TGG | - | chr1.1:52604408-52604427 | None:intergenic | 40.0% | |
| AAGGATGGAGCATGCATAAA+GGG | - | chr1.1:52604393-52604412 | None:intergenic | 40.0% | |
| AATTTCATGGGAAGAAGCTG+AGG | - | chr1.1:52602578-52602597 | None:intergenic | 40.0% | |
| ACCAACATTACTAGGTCAAC+CGG | + | chr1.1:52605724-52605743 | MS.gene49320:intron | 40.0% | |
| ACTTCGCTTACCTAAATTCC+TGG | + | chr1.1:52603255-52603274 | MS.gene49320:intron | 40.0% | |
| AGAATCTACATGCATGCATG+AGG | - | chr1.1:52602086-52602105 | None:intergenic | 40.0% | |
| AGAGGTAGGTATCACATGTT+TGG | - | chr1.1:52605779-52605798 | None:intergenic | 40.0% | |
| AGCAACGAATCGGGTTAATT+TGG | - | chr1.1:52604681-52604700 | None:intergenic | 40.0% | |
| AGCAGAGGAAATAGAAGAGA+GGG | + | chr1.1:52603055-52603074 | MS.gene49320:intron | 40.0% | |
| AGGAAATAGAAGAGAGGGAA+GGG | + | chr1.1:52603060-52603079 | MS.gene49320:intron | 40.0% | |
| AGTCTGAACAAAGCTCTGTA+TGG | + | chr1.1:52605635-52605654 | MS.gene49320:intron | 40.0% | |
| ATGTGAAGGAATGTCTTCCA+TGG | + | chr1.1:52603881-52603900 | MS.gene49320:intron | 40.0% | |
| ATTTCAGACCCAAATCCGTA+CGG | - | chr1.1:52604514-52604533 | None:intergenic | 40.0% | |
| ATTTGTCCATAGTTCCTGAG+AGG | - | chr1.1:52603757-52603776 | None:intergenic | 40.0% | |
| CAAATCAAACCGTACGGATT+TGG | + | chr1.1:52604502-52604521 | MS.gene49320:intron | 40.0% | |
| CAGTAAAGTCCAATATGGTC+AGG | - | chr1.1:52602447-52602466 | None:intergenic | 40.0% | |
| CCAAAGCATAAGGGATACTT+TGG | + | chr1.1:52604842-52604861 | MS.gene49320:intron | 40.0% | |
| CCTATATATATGCCCTCTGA+AGG | + | chr1.1:52603995-52604014 | MS.gene49320:intron | 40.0% | |
| CCTTAAATCAGCAACGAATC+GGG | - | chr1.1:52604690-52604709 | None:intergenic | 40.0% | |
| CTACCAGTGAGAACATTCTT+CGG | - | chr1.1:52604183-52604202 | None:intergenic | 40.0% | |
| CTCAACCAACCAACATTACT+AGG | + | chr1.1:52605716-52605735 | MS.gene49320:intron | 40.0% | |
| CTCGTCCAAAAAGAACTGAA+TGG | + | chr1.1:52604587-52604606 | MS.gene49320:intron | 40.0% | |
| CTTCGCTTACCTAAATTCCT+GGG | + | chr1.1:52603256-52603275 | MS.gene49320:intron | 40.0% | |
| GAAGGATTAAACATAGGGGA+AGG | + | chr1.1:52601964-52601983 | MS.gene49320:intron | 40.0% | |
| GAAGGGGTAAAGTTGTAATC+TGG | - | chr1.1:52601902-52601921 | None:intergenic | 40.0% | |
| GCAACGAATCGGGTTAATTT+GGG | - | chr1.1:52604680-52604699 | None:intergenic | 40.0% | |
| GCAGTGGCATCTTTATATGA+CGG | + | chr1.1:52603918-52603937 | MS.gene49320:intron | 40.0% | |
| GCTCAAAACTCTTACAATGG+TGG | - | chr1.1:52603211-52603230 | None:intergenic | 40.0% | |
| GGGAAATGACAACACATTGA+TGG | + | chr1.1:52604071-52604090 | MS.gene49320:intron | 40.0% | |
| GTAAATTTATCCGGATGGAC+AGG | - | chr1.1:52602915-52602934 | None:intergenic | 40.0% | |
| GTAGCTCAAATCAAACCGTA+CGG | + | chr1.1:52604496-52604515 | MS.gene49320:intron | 40.0% | |
| GTCATATAAAGATGCCACTG+CGG | - | chr1.1:52603919-52603938 | None:intergenic | 40.0% | |
| GTCTATGGCATGTCAAGTAA+CGG | - | chr1.1:52602681-52602700 | None:intergenic | 40.0% | |
| GTTGACCTAGTAATGTTGGT+TGG | - | chr1.1:52605724-52605743 | None:intergenic | 40.0% | |
| TAATACTTGCTTCAGATCCG+TGG | + | chr1.1:52601414-52601433 | MS.gene49320:intron | 40.0% | |
| TACAATGTTCCTCATAACCC+AGG | + | chr1.1:52604885-52604904 | MS.gene49320:intron | 40.0% | |
| TAGCAGAGGAAATAGAAGAG+AGG | + | chr1.1:52603054-52603073 | MS.gene49320:intron | 40.0% | |
| TCCTTCACATATTGCCTATG+GGG | - | chr1.1:52603871-52603890 | None:intergenic | 40.0% | |
| TGCCAGTGATCGTTAAAAAG+TGG | - | chr1.1:52601627-52601646 | None:intergenic | 40.0% | |
| TGGTCACCATTTAACAACAC+TGG | - | chr1.1:52603805-52603824 | None:intergenic | 40.0% | |
| TGTCCTATCAGGTTCATATC+CGG | - | chr1.1:52602967-52602986 | None:intergenic | 40.0% | |
| ! | CATTCAGTTCTTTTTGGACG+AGG | - | chr1.1:52604589-52604608 | None:intergenic | 40.0% |
| ! | CCAAAGTATCCCTTATGCTT+TGG | - | chr1.1:52604845-52604864 | None:intergenic | 40.0% |
| ! | CCTTCAGAGGGCATATATAT+AGG | - | chr1.1:52603998-52604017 | None:intergenic | 40.0% |
| ! | GTGTTGTTAAATGGTGACCA+TGG | + | chr1.1:52603805-52603824 | MS.gene49320:intron | 40.0% |
| ! | TCTGTGTATGGTGATGTTTC+AGG | + | chr1.1:52604138-52604157 | MS.gene49320:intron | 40.0% |
| !! | AAGAGCAACTCTGTTGTTTC+GGG | - | chr1.1:52602509-52602528 | None:intergenic | 40.0% |
| !! | ACTGTTTCTAGCTGATACAG+GGG | - | chr1.1:52603537-52603556 | None:intergenic | 40.0% |
| !! | CAATGGATGGATTGCAAGAT+AGG | + | chr1.1:52602620-52602639 | MS.gene49320:CDS | 40.0% |
| !! | TGGAGGTGTTTAAATTGTCC+CGG | - | chr1.1:52605237-52605256 | None:intergenic | 40.0% |
| !!! | GCATAACAGGTTTTGATTGC+AGG | - | chr1.1:52605085-52605104 | None:intergenic | 40.0% |
| !!! | TGCAGGAATTGTGTCGTTTT+TGG | + | chr1.1:52602860-52602879 | MS.gene49320:intron | 40.0% |
| AACACTGGTGACCCATCATT+GGG | + | chr1.1:52602996-52603015 | MS.gene49320:intron | 45.0% | |
| ACACCATATGATCCAGCATG+CGG | - | chr1.1:52603621-52603640 | None:intergenic | 45.0% | |
| AGGTGATATACATGAGGAGG+TGG | + | chr1.1:52603585-52603604 | MS.gene49320:CDS | 45.0% | |
| AGGTGCATGCTAGTGTTCAT+TGG | + | chr1.1:52601984-52602003 | MS.gene49320:intron | 45.0% | |
| AGTGAATAGGGCCCAATGAT+GGG | - | chr1.1:52603010-52603029 | None:intergenic | 45.0% | |
| ATGAACCTGATAGGACACCA+AGG | + | chr1.1:52602970-52602989 | MS.gene49320:intron | 45.0% | |
| CAGGAGAGCTTGTGTTAGAA+AGG | - | chr1.1:52605203-52605222 | None:intergenic | 45.0% | |
| CATCCGGATATGAACCTGAT+AGG | + | chr1.1:52602961-52602980 | MS.gene49320:intron | 45.0% | |
| CCAACATTACTAGGTCAACC+GGG | + | chr1.1:52605725-52605744 | MS.gene49320:intron | 45.0% | |
| CCAGAAGATTGTAGTAGCAG+AGG | + | chr1.1:52603040-52603059 | MS.gene49320:intron | 45.0% | |
| CCTATGACGTCAAGTAGGAA+GGG | - | chr1.1:52601919-52601938 | None:intergenic | 45.0% | |
| CCTCTGCTACTACAATCTTC+TGG | - | chr1.1:52603043-52603062 | None:intergenic | 45.0% | |
| CGTGGATACTCTGTAGTAGA+CGG | + | chr1.1:52601432-52601451 | MS.gene49320:intron | 45.0% | |
| CTATCAGGTTCATATCCGGA+TGG | - | chr1.1:52602963-52602982 | None:intergenic | 45.0% | |
| CTATGACGTCAAGTAGGAAG+GGG | - | chr1.1:52601918-52601937 | None:intergenic | 45.0% | |
| CTTTGTACAGGATAGCTAGG+TGG | - | chr1.1:52602706-52602725 | None:intergenic | 45.0% | |
| GAAGGATGGAGCATGCATAA+AGG | - | chr1.1:52604394-52604413 | None:intergenic | 45.0% | |
| GAAGGTGGTGAATTGTGGAT+AGG | + | chr1.1:52601569-52601588 | MS.gene49320:intron | 45.0% | |
| GAGGAAATAGAAGAGAGGGA+AGG | + | chr1.1:52603059-52603078 | MS.gene49320:intron | 45.0% | |
| GAGGAGTAGTATATGCTTGG+AGG | - | chr1.1:52605254-52605273 | None:intergenic | 45.0% | |
| GCTGTCAGGTGATATACATG+AGG | + | chr1.1:52603579-52603598 | MS.gene49320:intron | 45.0% | |
| GGAAATAGAAGAGAGGGAAG+GGG | + | chr1.1:52603061-52603080 | MS.gene49320:intron | 45.0% | |
| GGATAATCATAACCGCATGC+TGG | + | chr1.1:52603606-52603625 | MS.gene49320:CDS | 45.0% | |
| GTCAGGTGATATACATGAGG+AGG | + | chr1.1:52603582-52603601 | MS.gene49320:CDS | 45.0% | |
| GTGGATACTCTGTAGTAGAC+GGG | + | chr1.1:52601433-52601452 | MS.gene49320:intron | 45.0% | |
| TAACCGCATGCTGGATCATA+TGG | + | chr1.1:52603615-52603634 | MS.gene49320:CDS | 45.0% | |
| TAGTGAATAGGGCCCAATGA+TGG | - | chr1.1:52603011-52603030 | None:intergenic | 45.0% | |
| TGTTGCCTATGACGTCAAGT+AGG | - | chr1.1:52601924-52601943 | None:intergenic | 45.0% | |
| TTAATCCCACCATCCACTTG+CGG | + | chr1.1:52605601-52605620 | MS.gene49320:intron | 45.0% | |
| TTCACATATTGCCTATGGGG+CGG | - | chr1.1:52603868-52603887 | None:intergenic | 45.0% | |
| TTGCGTGTGTTAAGAGCTGA+AGG | + | chr1.1:52601551-52601570 | MS.gene49320:intron | 45.0% | |
| ! | ATTTTTCACAACCGCCCCAT+AGG | + | chr1.1:52603854-52603873 | MS.gene49320:intron | 45.0% |
| ! | CGTCTACTACAGAGTATCCA+CGG | - | chr1.1:52601434-52601453 | None:intergenic | 45.0% |
| ! | GGAGAGTTACTCTCTGGTTT+AGG | + | chr1.1:52603125-52603144 | MS.gene49320:intron | 45.0% |
| ! | TACTCTGTAGTAGACGGGTT+TGG | + | chr1.1:52601438-52601457 | MS.gene49320:intron | 45.0% |
| ! | TTTGATGGTATTGAGGAGGG+TGG | + | chr1.1:52602529-52602548 | MS.gene49320:CDS | 45.0% |
| !! | CCAATGTTGTTGATGGCAGA+GGG | - | chr1.1:52603954-52603973 | None:intergenic | 45.0% |
| !! | CCCGATTCGTTGCTGATTTA+AGG | + | chr1.1:52604687-52604706 | MS.gene49320:intron | 45.0% |
| !! | TCCAATGTTGTTGATGGCAG+AGG | - | chr1.1:52603955-52603974 | None:intergenic | 45.0% |
| ACTGGAGACCTCGGAAATCT+AGG | + | chr1.1:52604949-52604968 | MS.gene49320:intron | 50.0% | |
| AGGTTCATATCCGGATGGAC+AGG | - | chr1.1:52602958-52602977 | None:intergenic | 50.0% | |
| ATGGCGCCACATGTCAGATT+CGG | + | chr1.1:52603824-52603843 | MS.gene49320:intron | 50.0% | |
| CAGCCGAAGAATGTTCTCAC+TGG | + | chr1.1:52604177-52604196 | MS.gene49320:intron | 50.0% | |
| CAGTGAGAACATTCTTCGGC+TGG | - | chr1.1:52604179-52604198 | None:intergenic | 50.0% | |
| CCCGGTTGACCTAGTAATGT+TGG | - | chr1.1:52605728-52605747 | None:intergenic | 50.0% | |
| CCCTCTGCCATCAACAACAT+TGG | + | chr1.1:52603951-52603970 | MS.gene49320:intron | 50.0% | |
| CCCTTCCTACTTGACGTCAT+AGG | + | chr1.1:52601916-52601935 | MS.gene49320:intron | 50.0% | |
| CGTGTGTTAAGAGCTGAAGG+TGG | + | chr1.1:52601554-52601573 | MS.gene49320:intron | 50.0% | |
| CTGCATAACACTGGAGACCT+CGG | + | chr1.1:52604940-52604959 | MS.gene49320:intron | 50.0% | |
| CTGCGAGACTGCAAATGATG+AGG | - | chr1.1:52605167-52605186 | None:intergenic | 50.0% | |
| CTGTCAGGAGAGTTACTCTC+TGG | + | chr1.1:52603119-52603138 | MS.gene49320:intron | 50.0% | |
| GAACACTGGTGACCCATCAT+TGG | + | chr1.1:52602995-52603014 | MS.gene49320:intron | 50.0% | |
| GAGCTGAAGGTGGTGAATTG+TGG | + | chr1.1:52601564-52601583 | MS.gene49320:intron | 50.0% | |
| GATAGCTAGGTGGCAGTCTA+TGG | - | chr1.1:52602696-52602715 | None:intergenic | 50.0% | |
| GCAAATGATGAGGATGTCCG+CGG | - | chr1.1:52605157-52605176 | None:intergenic | 50.0% | |
| GCATGCTCCATCCTTCAGTT+TGG | + | chr1.1:52604398-52604417 | MS.gene49320:intron | 50.0% | |
| GCCCCATAGGCAATATGTGA+AGG | + | chr1.1:52603867-52603886 | MS.gene49320:intron | 50.0% | |
| GCCTATGACGTCAAGTAGGA+AGG | - | chr1.1:52601920-52601939 | None:intergenic | 50.0% | |
| GGCGAGGAGTAGTATATGCT+TGG | - | chr1.1:52605257-52605276 | None:intergenic | 50.0% | |
| GGTTCATATCCGGATGGACA+GGG | - | chr1.1:52602957-52602976 | None:intergenic | 50.0% | |
| GTCTCCAGTGTTATGCAGGT+GGG | - | chr1.1:52604938-52604957 | None:intergenic | 50.0% | |
| GTCTGTTTGCAACAGCTGTC+AGG | + | chr1.1:52603565-52603584 | MS.gene49320:intron | 50.0% | |
| TAATCCCACCATCCACTTGC+GGG | + | chr1.1:52605602-52605621 | MS.gene49320:intron | 50.0% | |
| TGACACCCGAATCTGACATG+TGG | - | chr1.1:52603833-52603852 | None:intergenic | 50.0% | |
| TGATTGGGATAAGGTTGCGG+AGG | - | chr1.1:52605385-52605404 | None:intergenic | 50.0% | |
| TGCAAGAGCCTAGATTTCCG+AGG | - | chr1.1:52604960-52604979 | None:intergenic | 50.0% | |
| ! | ACTCTCTGGTTTAGGAGCTC+TGG | + | chr1.1:52603133-52603152 | MS.gene49320:intron | 50.0% |
| ! | CAGTTCTTTTTGGACGAGGG+TGG | - | chr1.1:52604585-52604604 | None:intergenic | 50.0% |
| ! | TAGGAGCTCTGGTCTGGATT+AGG | + | chr1.1:52603144-52603163 | MS.gene49320:intron | 50.0% |
| ! | TTCTTTTTGGACGAGGGTGG+AGG | - | chr1.1:52604582-52604601 | None:intergenic | 50.0% |
| !! | GGATTAGTCGGTCTTTGAGC+TGG | - | chr1.1:52605574-52605593 | None:intergenic | 50.0% |
| !! | TTCGACCTTGGTGTCCTATC+AGG | - | chr1.1:52602978-52602997 | None:intergenic | 50.0% |
| AGGAAGTGAAGCTGCTCTGC+AGG | - | chr1.1:52601819-52601838 | None:intergenic | 55.0% | |
| AGGACACCAAGGTCGAACAC+TGG | + | chr1.1:52602981-52603000 | MS.gene49320:intron | 55.0% | |
| ATCATTGGGCCCTGTCCATC+CGG | + | chr1.1:52602902-52602921 | MS.gene49320:intron | 55.0% | |
| CATTCAGCGCCTGGGTTATG+AGG | - | chr1.1:52604897-52604916 | None:intergenic | 55.0% | |
| CGAGGTCTCCAGTGTTATGC+AGG | - | chr1.1:52604942-52604961 | None:intergenic | 55.0% | |
| CTCTCCTGCTTCTGTTCTGC+CGG | + | chr1.1:52605215-52605234 | MS.gene49320:intron | 55.0% | |
| CTTAAATGGGGTCCCGCAAG+TGG | - | chr1.1:52605617-52605636 | None:intergenic | 55.0% | |
| GAATCTGACATGTGGCGCCA+TGG | - | chr1.1:52603825-52603844 | None:intergenic | 55.0% | |
| GATGCCACTGCGGCTAATGA+CGG | - | chr1.1:52603909-52603928 | None:intergenic | 55.0% | |
| GATGGACAGGGCCCAATGAT+GGG | - | chr1.1:52602902-52602921 | None:intergenic | 55.0% | |
| GGGAGTCCTCTCAGGAACTA+TGG | + | chr1.1:52603748-52603767 | MS.gene49320:CDS | 55.0% | |
| GGTCTCCAGTGTTATGCAGG+TGG | - | chr1.1:52604939-52604958 | None:intergenic | 55.0% | |
| TCTCCTGCTTCTGTTCTGCC+GGG | + | chr1.1:52605216-52605235 | MS.gene49320:intron | 55.0% | |
| TCTTCAAGGGGAGTCCTCTC+AGG | + | chr1.1:52603740-52603759 | MS.gene49320:CDS | 55.0% | |
| TGAGCCCACCTGCATAACAC+TGG | + | chr1.1:52604931-52604950 | MS.gene49320:intron | 55.0% | |
| TGGCGCCACATGTCAGATTC+GGG | + | chr1.1:52603825-52603844 | MS.gene49320:intron | 55.0% | |
| ! | CTGGTTTAGGAGCTCTGGTC+TGG | + | chr1.1:52603138-52603157 | MS.gene49320:intron | 55.0% |
| AATGGGGTCCCGCAAGTGGA+TGG | - | chr1.1:52605613-52605632 | None:intergenic | 60.0% | |
| ACCTTGACGCATTCAGCGCC+TGG | - | chr1.1:52604906-52604925 | None:intergenic | 60.0% | |
| CCTTGACGCATTCAGCGCCT+GGG | - | chr1.1:52604905-52604924 | None:intergenic | 60.0% | |
| GAAGAGAGGGAAGGGGAGTG+AGG | + | chr1.1:52603068-52603087 | MS.gene49320:intron | 60.0% | |
| GGATGGACAGGGCCCAATGA+TGG | - | chr1.1:52602903-52602922 | None:intergenic | 60.0% | |
| GGGTCACCAGTGTTCGACCT+TGG | - | chr1.1:52602990-52603009 | None:intergenic | 60.0% | |
| TGAGGATGTCCGCGGCTTCT+AGG | - | chr1.1:52605149-52605168 | None:intergenic | 60.0% | |
| TGCTCTGCAGGCAGAGACGT+AGG | - | chr1.1:52601807-52601826 | None:intergenic | 60.0% | |
| TGTCCCGGCAGAACAGAAGC+AGG | - | chr1.1:52605222-52605241 | None:intergenic | 60.0% | |
| ! | TGCGGCTAATGACGGTGCCA+TGG | - | chr1.1:52603901-52603920 | None:intergenic | 60.0% |
| !! | TAGCACTGGCCTAGAAGCCG+CGG | + | chr1.1:52605137-52605156 | MS.gene49320:intron | 60.0% |
| GGCACCGTCATTAGCCGCAG+TGG | + | chr1.1:52603902-52603921 | MS.gene49320:intron | 65.0% | |
| GGGTCCCGCAAGTGGATGGT+GGG | - | chr1.1:52605609-52605628 | None:intergenic | 65.0% | |
| !! | CCCAGGCGCTGAATGCGTCA+AGG | + | chr1.1:52604902-52604921 | MS.gene49320:intron | 65.0% |
| GGGGTCCCGCAAGTGGATGG+TGG | - | chr1.1:52605610-52605629 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52601283 | 52605898 | 52601283 | ID=MS.gene49320 |
| chr1.1 | mRNA | 52601283 | 52605898 | 52601283 | ID=MS.gene49320.t1;Parent=MS.gene49320 |
| chr1.1 | exon | 52601283 | 52601299 | 52601283 | ID=MS.gene49320.t1.exon1;Parent=MS.gene49320.t1 |
| chr1.1 | CDS | 52601283 | 52601299 | 52601283 | ID=cds.MS.gene49320.t1;Parent=MS.gene49320.t1 |
| chr1.1 | exon | 52602501 | 52602660 | 52602501 | ID=MS.gene49320.t1.exon2;Parent=MS.gene49320.t1 |
| chr1.1 | CDS | 52602501 | 52602660 | 52602501 | ID=cds.MS.gene49320.t1;Parent=MS.gene49320.t1 |
| chr1.1 | exon | 52603580 | 52603636 | 52603580 | ID=MS.gene49320.t1.exon3;Parent=MS.gene49320.t1 |
| chr1.1 | CDS | 52603580 | 52603636 | 52603580 | ID=cds.MS.gene49320.t1;Parent=MS.gene49320.t1 |
| chr1.1 | exon | 52603725 | 52603784 | 52603725 | ID=MS.gene49320.t1.exon4;Parent=MS.gene49320.t1 |
| chr1.1 | CDS | 52603725 | 52603784 | 52603725 | ID=cds.MS.gene49320.t1;Parent=MS.gene49320.t1 |
| chr1.1 | exon | 52605842 | 52605898 | 52605842 | ID=MS.gene49320.t1.exon5;Parent=MS.gene49320.t1 |
| chr1.1 | CDS | 52605842 | 52605898 | 52605842 | ID=cds.MS.gene49320.t1;Parent=MS.gene49320.t1 |
| Gene Sequence |
| Protein sequence |
