Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08319.t1 | RHN42374.1 | 96.5 | 229 | 5 | 1 | 27 | 252 | 26 | 254 | 5.20E-101 | 377.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08319.t1 | Q9C918 | 55.8 | 113 | 47 | 2 | 141 | 252 | 8 | 118 | 2.4e-30 | 134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08319.t1 | A0A396GS89 | 96.5 | 229 | 5 | 1 | 27 | 252 | 26 | 254 | 3.8e-101 | 377.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene08319 | 0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene049424 | MS.gene08319 | 0.840109 | 1.06E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene08319 | 0.817885 | 2.61E-52 | -1.69E-46 |
| MS.gene050085 | MS.gene08319 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene050119 | MS.gene08319 | 0.849821 | 2.53E-60 | -1.69E-46 |
| MS.gene050384 | MS.gene08319 | 0.82491 | 6.25E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene08319 | 0.821 | 5.10E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene08319 | 0.801294 | 9.64E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene08319 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene08319 | 0.801627 | 8.24E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene08319 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene08319 | 0.815496 | 8.97E-52 | -1.69E-46 |
| MS.gene050987 | MS.gene08319 | 0.810399 | 1.18E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene08319 | 0.824511 | 7.76E-54 | -1.69E-46 |
| MS.gene052239 | MS.gene08319 | -0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene08319 | 0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene08319 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene08319 | 0.805737 | 1.16E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene08319 | 0.805023 | 1.63E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene08319 | 0.802225 | 6.21E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene08319 | 0.852059 | 5.92E-61 | -1.69E-46 |
| MS.gene053216 | MS.gene08319 | 0.830439 | 2.93E-55 | -1.69E-46 |
| MS.gene053565 | MS.gene08319 | 0.826917 | 2.09E-54 | -1.69E-46 |
| MS.gene053575 | MS.gene08319 | 0.82108 | 4.88E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene08319 | 0.818416 | 1.98E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene08319 | 0.802747 | 4.85E-49 | -1.69E-46 |
| MS.gene054537 | MS.gene08319 | 0.839043 | 2.01E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene08319 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene054994 | MS.gene08319 | 0.803776 | 2.97E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene08319 | 0.826623 | 2.45E-54 | -1.69E-46 |
| MS.gene055230 | MS.gene08319 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene08319 | 0.818202 | 2.22E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene08319 | 0.809 | 2.35E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene08319 | 0.82186 | 3.23E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene08319 | 0.804783 | 1.83E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene08319 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene08319 | 0.801475 | 8.85E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene08319 | 0.806375 | 8.48E-50 | -1.69E-46 |
| MS.gene057392 | MS.gene08319 | 0.822861 | 1.89E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene08319 | 0.80221 | 6.25E-49 | -1.69E-46 |
| MS.gene057446 | MS.gene08319 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene08319 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene08319 | 0.808511 | 2.99E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene08319 | 0.853952 | 1.70E-61 | -1.69E-46 |
| MS.gene05795 | MS.gene08319 | 0.817899 | 2.60E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene08319 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene08319 | 0.829711 | 4.42E-55 | -1.69E-46 |
| MS.gene058054 | MS.gene08319 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene058126 | MS.gene08319 | 0.808847 | 2.53E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene08319 | 0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene08319 | 0.820018 | 8.56E-53 | -1.69E-46 |
| MS.gene058634 | MS.gene08319 | 0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene08319 | 0.839011 | 2.04E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene08319 | 0.827696 | 1.36E-54 | -1.69E-46 |
| MS.gene059317 | MS.gene08319 | 0.826772 | 2.26E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene08319 | 0.827938 | 1.19E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene08319 | 0.801946 | 7.08E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene08319 | 0.820556 | 6.44E-53 | -1.69E-46 |
| MS.gene060918 | MS.gene08319 | 0.82872 | 7.68E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene08319 | 0.807642 | 4.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08319.t1 | MTR_2g079280 | 55.200 | 125 | 54 | 1 | 145 | 269 | 80 | 202 | 4.35e-43 | 149 |
| MS.gene08319.t1 | MTR_0274s0030 | 60.185 | 108 | 41 | 1 | 145 | 252 | 70 | 175 | 4.41e-40 | 142 |
| MS.gene08319.t1 | MTR_7g023760 | 60.185 | 108 | 41 | 1 | 145 | 252 | 47 | 152 | 5.40e-40 | 141 |
| MS.gene08319.t1 | MTR_2g079270 | 49.367 | 158 | 56 | 5 | 115 | 252 | 215 | 368 | 1.34e-39 | 145 |
| MS.gene08319.t1 | MTR_1g092460 | 59.259 | 108 | 42 | 1 | 145 | 252 | 133 | 238 | 1.16e-38 | 140 |
| MS.gene08319.t1 | MTR_4g007210 | 50.413 | 121 | 58 | 1 | 134 | 254 | 26 | 144 | 2.33e-36 | 133 |
| MS.gene08319.t1 | MTR_8g060700 | 50.746 | 134 | 63 | 2 | 121 | 254 | 435 | 565 | 6.58e-34 | 130 |
| MS.gene08319.t1 | MTR_8g060700 | 50.746 | 134 | 63 | 2 | 121 | 254 | 435 | 565 | 9.54e-34 | 129 |
| MS.gene08319.t1 | MTR_8g060700 | 50.746 | 134 | 63 | 2 | 121 | 254 | 435 | 565 | 1.06e-33 | 129 |
| MS.gene08319.t1 | MTR_4g088835 | 56.436 | 101 | 43 | 1 | 158 | 257 | 638 | 738 | 2.00e-31 | 123 |
| MS.gene08319.t1 | MTR_2g013650 | 55.208 | 96 | 43 | 0 | 158 | 253 | 649 | 744 | 2.27e-30 | 120 |
| MS.gene08319.t1 | MTR_2g018540 | 52.427 | 103 | 29 | 1 | 150 | 252 | 87 | 169 | 9.67e-30 | 115 |
| MS.gene08319.t1 | MTR_4g020620 | 54.167 | 96 | 36 | 1 | 158 | 253 | 604 | 691 | 3.21e-29 | 116 |
| MS.gene08319.t1 | MTR_4g020620 | 54.167 | 96 | 36 | 1 | 158 | 253 | 546 | 633 | 4.22e-29 | 116 |
| MS.gene08319.t1 | MTR_1g112730 | 55.319 | 94 | 38 | 2 | 159 | 252 | 828 | 917 | 6.72e-28 | 112 |
| MS.gene08319.t1 | MTR_7g047570 | 56.383 | 94 | 38 | 2 | 161 | 252 | 7 | 99 | 9.74e-28 | 109 |
| MS.gene08319.t1 | MTR_7g451770 | 56.383 | 94 | 38 | 2 | 161 | 252 | 7 | 99 | 9.74e-28 | 109 |
| MS.gene08319.t1 | MTR_1g092465 | 41.558 | 154 | 57 | 4 | 103 | 253 | 175 | 298 | 4.84e-27 | 109 |
| MS.gene08319.t1 | MTR_7g451800 | 52.688 | 93 | 41 | 2 | 162 | 252 | 8 | 99 | 1.29e-23 | 98.2 |
| MS.gene08319.t1 | MTR_7g047620 | 52.688 | 93 | 41 | 2 | 162 | 252 | 8 | 99 | 1.29e-23 | 98.2 |
| MS.gene08319.t1 | MTR_1g092440 | 35.762 | 151 | 54 | 2 | 145 | 252 | 292 | 442 | 2.28e-22 | 96.7 |
| MS.gene08319.t1 | MTR_4g086440 | 64.516 | 62 | 22 | 0 | 191 | 252 | 37 | 98 | 4.34e-21 | 90.9 |
| MS.gene08319.t1 | MTR_0332s0040 | 67.241 | 58 | 15 | 2 | 195 | 252 | 165 | 218 | 2.86e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08319.t1 | AT1G53023 | 54.167 | 120 | 45 | 2 | 143 | 252 | 2 | 121 | 1.02e-36 | 132 |
| MS.gene08319.t1 | AT1G53025 | 56.637 | 113 | 44 | 2 | 143 | 252 | 225 | 335 | 2.04e-35 | 133 |
| MS.gene08319.t1 | AT1G53025 | 56.637 | 113 | 44 | 2 | 143 | 252 | 225 | 335 | 2.57e-35 | 133 |
| MS.gene08319.t1 | AT3G15355 | 50.893 | 112 | 53 | 1 | 143 | 254 | 289 | 398 | 4.27e-34 | 130 |
| MS.gene08319.t1 | AT2G33770 | 54.167 | 96 | 44 | 0 | 158 | 253 | 632 | 727 | 7.60e-32 | 124 |
| MS.gene08319.t1 | AT2G16920 | 38.122 | 181 | 98 | 5 | 79 | 252 | 741 | 914 | 8.04e-28 | 112 |
| MS.gene08319.t1 | AT2G16920 | 38.122 | 181 | 98 | 5 | 79 | 252 | 741 | 914 | 8.04e-28 | 112 |
Find 57 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAGGATGGAGCTTATT+AGG | 0.145484 | 4.1:-16681471 | MS.gene08319:CDS |
| CTTCTGTTGCCAGGATGCTT+TGG | 0.314493 | 4.1:-16682515 | MS.gene08319:intron |
| CTTGACGACGACGCCAGAAT+TGG | 0.336149 | 4.1:+16683600 | None:intergenic |
| TTTCGAACTGGACTCTGAAT+TGG | 0.355051 | 4.1:+16682174 | None:intergenic |
| GACAATGTGGATTTGCCTCC+GGG | 0.372987 | 4.1:-16682256 | MS.gene08319:CDS |
| TGCCAGGATGCTTTGGTCCC+TGG | 0.386858 | 4.1:-16682508 | MS.gene08319:intron |
| GGAACTGCAGGGTACTTTGC+AGG | 0.401038 | 4.1:+16681382 | None:intergenic |
| ATCTACTTCAGCTTTCGAAC+TGG | 0.417449 | 4.1:+16682162 | None:intergenic |
| ATCTTATCATAATGATGATC+AGG | 0.419705 | 4.1:+16682073 | None:intergenic |
| ATCTAGGATGGAGCTTATTA+GGG | 0.420392 | 4.1:-16681470 | MS.gene08319:CDS |
| TCAATGTCACTGAATTCAAT+TGG | 0.421474 | 4.1:-16682421 | MS.gene08319:CDS |
| TTGACGACGACGCCAGAATT+GGG | 0.428770 | 4.1:+16683601 | None:intergenic |
| ATGCAGTCATGCAAAAGTTT+CGG | 0.439516 | 4.1:-16682129 | MS.gene08319:CDS |
| GATCATCATTATGATAAGAT+AGG | 0.441368 | 4.1:-16682070 | MS.gene08319:CDS |
| TGACAATGTGGATTTGCCTC+CGG | 0.442691 | 4.1:-16682257 | MS.gene08319:CDS |
| TCTTACAGCGACCAAAGAAC+TGG | 0.445315 | 4.1:-16681931 | MS.gene08319:intron |
| TTGTGAGAGTTTGTGAATCT+AGG | 0.448277 | 4.1:-16681486 | MS.gene08319:CDS |
| AGCATCAGTGCCTTGGTTGA+AGG | 0.462539 | 4.1:-16682227 | MS.gene08319:CDS |
| ACGAAAACAAGAGGAAGAGC+AGG | 0.482338 | 4.1:-16683575 | MS.gene08319:intron |
| CTCATAGAATTTCCATGACC+AGG | 0.487258 | 4.1:+16682490 | None:intergenic |
| ATGAGTGTCGGAGAATCATC+TGG | 0.492477 | 4.1:-16682472 | MS.gene08319:CDS |
| TAATAGTCAGAGCCATCGTC+AGG | 0.495284 | 4.1:+16682331 | None:intergenic |
| GCTGTCATCGTTGGACCTCT+AGG | 0.497159 | 4.1:-16681448 | MS.gene08319:CDS |
| GATGCTTTGGTCCCTGGTCA+TGG | 0.499453 | 4.1:-16682502 | MS.gene08319:CDS |
| CTTATTAGGGCTGTCATCGT+TGG | 0.504437 | 4.1:-16681457 | MS.gene08319:CDS |
| ATACATACCGGTGGAACTGC+AGG | 0.508289 | 4.1:+16681370 | None:intergenic |
| AAGACACATCTTAAAACAAG+TGG | 0.532656 | 4.1:+16681337 | None:intergenic |
| GGCACTGATGCTTCTACCCC+CGG | 0.533051 | 4.1:+16682238 | None:intergenic |
| TGCTTCAGCCGCAGAGACAC+AGG | 0.549616 | 4.1:-16682047 | MS.gene08319:intron |
| TTCATTTCACAACGATGATG+AGG | 0.553115 | 4.1:-16682383 | MS.gene08319:CDS |
| GAAGAAAAGACCGTCATGGT+AGG | 0.560934 | 4.1:+16681420 | None:intergenic |
| GGGTAGAAGCATCAGTGCCT+TGG | 0.561597 | 4.1:-16682234 | MS.gene08319:CDS |
| AAGAAAAGACCGTCATGGTA+GGG | 0.570573 | 4.1:+16681421 | None:intergenic |
| TGACGACGACGCCAGAATTG+GGG | 0.572784 | 4.1:+16683602 | None:intergenic |
| AAAGTACCCTGCAGTTCCAC+CGG | 0.575597 | 4.1:-16681377 | MS.gene08319:CDS |
| GTCGGAGAATCATCTGGTAG+TGG | 0.576524 | 4.1:-16682466 | MS.gene08319:CDS |
| CATTCGACATCCTTCAACCA+AGG | 0.582609 | 4.1:+16682217 | None:intergenic |
| GATGTCGAATGCAAGCCGGC+TGG | 0.593939 | 4.1:-16682205 | MS.gene08319:CDS |
| GCAGGATCAATTTGACAATG+TGG | 0.594867 | 4.1:-16682269 | MS.gene08319:CDS |
| GAGAGTTTGTGAATCTAGGA+TGG | 0.598904 | 4.1:-16681482 | MS.gene08319:CDS |
| GAAGGATGTCGAATGCAAGC+CGG | 0.603924 | 4.1:-16682209 | MS.gene08319:CDS |
| CAATGTGGATTTGCCTCCGG+GGG | 0.605131 | 4.1:-16682254 | MS.gene08319:CDS |
| CATGGAAATTCTATGAGTGT+CGG | 0.608315 | 4.1:-16682484 | MS.gene08319:CDS |
| CGTCAAGAAACGAAAACAAG+AGG | 0.608319 | 4.1:-16683584 | MS.gene08319:CDS |
| GGAACATTAATGATACATAC+CGG | 0.613099 | 4.1:+16681358 | None:intergenic |
| GACGACGACGCCAGAATTGG+GGG | 0.621069 | 4.1:+16683603 | None:intergenic |
| CAAAGAAGAAAAGACCGTCA+TGG | 0.627963 | 4.1:+16681416 | None:intergenic |
| CTAGGCACTCCCTACCATGA+CGG | 0.653137 | 4.1:-16681430 | MS.gene08319:CDS |
| TACATACCGGTGGAACTGCA+GGG | 0.654447 | 4.1:+16681371 | None:intergenic |
| ACAATGTGGATTTGCCTCCG+GGG | 0.658182 | 4.1:-16682255 | MS.gene08319:CDS |
| TCATAGAATTTCCATGACCA+GGG | 0.666561 | 4.1:+16682491 | None:intergenic |
| ATATATCACCTGTGTCTCTG+CGG | 0.668995 | 4.1:+16682039 | None:intergenic |
| CTCTGACTATTACGACGATG+AGG | 0.674543 | 4.1:-16682320 | MS.gene08319:CDS |
| TCATGGTAGGGAGTGCCTAG+AGG | 0.675357 | 4.1:+16681433 | None:intergenic |
| ACATTAATGATACATACCGG+TGG | 0.675547 | 4.1:+16681361 | None:intergenic |
| GCACTTGAAGATCCTGACGA+TGG | 0.700157 | 4.1:-16682343 | MS.gene08319:CDS |
| GAATTGGCATGAGAACCAGC+CGG | 0.715276 | 4.1:+16682190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATAAAAGGCAA+AGG | + | chr4.1:16683217-16683236 | None:intergenic | 15.0% |
| !! | ACTAAATTACCAAAATAATA+AGG | + | chr4.1:16683377-16683396 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAGTTTTGTCAA+TGG | - | chr4.1:16683232-16683251 | MS.gene08319:intron | 15.0% |
| !!! | TAAATTTATGCTGATTTATT+GGG | - | chr4.1:16682265-16682284 | MS.gene08319:CDS | 15.0% |
| !!! | TACATTCTTAAAAATACTTT+TGG | - | chr4.1:16683267-16683286 | MS.gene08319:intron | 15.0% |
| !!! | TTATTTTTTATCAGAATAGT+TGG | - | chr4.1:16681721-16681740 | MS.gene08319:intron | 15.0% |
| !! | ATAAAAAATTACTCTCTTGA+GGG | + | chr4.1:16683120-16683139 | None:intergenic | 20.0% |
| !! | ATTCATTATTCCTAACATAT+AGG | + | chr4.1:16682025-16682044 | None:intergenic | 20.0% |
| !! | ATTTCAACTTATTCATTGTA+TGG | + | chr4.1:16682303-16682322 | None:intergenic | 20.0% |
| !! | TATAAAAAATTACTCTCTTG+AGG | + | chr4.1:16683121-16683140 | None:intergenic | 20.0% |
| !! | TCATAATAATTTCAAAAGAG+CGG | + | chr4.1:16681747-16681766 | None:intergenic | 20.0% |
| !! | TTAAATTAAATCATCACTCA+AGG | - | chr4.1:16683296-16683315 | MS.gene08319:intron | 20.0% |
| !!! | AATGAATAAGTTGAAATATG+TGG | - | chr4.1:16682306-16682325 | MS.gene08319:CDS | 20.0% |
| !!! | ATAATGAATCGTTTTGTAAA+TGG | - | chr4.1:16682036-16682055 | MS.gene08319:intron | 20.0% |
| !!! | ATGAATAAGTTGAAATATGT+GGG | - | chr4.1:16682307-16682326 | MS.gene08319:CDS | 20.0% |
| !!! | CTAAATTTATGCTGATTTAT+TGG | - | chr4.1:16682264-16682283 | MS.gene08319:CDS | 20.0% |
| !!! | GAAATTCAACCTTATTATTT+TGG | - | chr4.1:16683365-16683384 | MS.gene08319:intron | 20.0% |
| !!! | TTGGGTTGTTTTTTTTATTT+CGG | - | chr4.1:16681547-16681566 | MS.gene08319:intron | 20.0% |
| ! | AATATAAGTTCGCAATTTGA+AGG | + | chr4.1:16682087-16682106 | None:intergenic | 25.0% |
| ! | AATCATGAAACTGAAATGAA+AGG | + | chr4.1:16681413-16681432 | None:intergenic | 25.0% |
| ! | AGAAAAAGATATAGTTTACC+TGG | + | chr4.1:16683092-16683111 | None:intergenic | 25.0% |
| ! | AGAAACATATAATCGGATTA+AGG | + | chr4.1:16683004-16683023 | None:intergenic | 25.0% |
| ! | ATCATGAAACTGAAATGAAA+GGG | + | chr4.1:16681412-16681431 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAGAAAAAAACA+TGG | + | chr4.1:16683173-16683192 | None:intergenic | 25.0% |
| ! | ATCTTATCATAATGATGATC+AGG | + | chr4.1:16682882-16682901 | None:intergenic | 25.0% |
| ! | GATCATCATTATGATAAGAT+AGG | - | chr4.1:16682882-16682901 | MS.gene08319:intron | 25.0% |
| ! | TAAAAAATTACTCTCTTGAG+GGG | + | chr4.1:16683119-16683138 | None:intergenic | 25.0% |
| ! | TTAACTTTATAGCTCATCAA+TGG | - | chr4.1:16681768-16681787 | MS.gene08319:intron | 25.0% |
| ! | TTATCATATTGCTGTAAAAG+TGG | - | chr4.1:16682114-16682133 | MS.gene08319:CDS | 25.0% |
| !! | ATTTCAGTTTCATGATTTTC+TGG | - | chr4.1:16681416-16681435 | MS.gene08319:CDS | 25.0% |
| !!! | ATTTTTTTTGTCCAGTTCTT+TGG | + | chr4.1:16683035-16683054 | None:intergenic | 25.0% |
| !!! | TTCATGATTTTCTGGTTTTA+TGG | - | chr4.1:16681424-16681443 | MS.gene08319:CDS | 25.0% |
| !!! | TTTGTCTTTTTTGACGAATT+GGG | - | chr4.1:16681529-16681548 | MS.gene08319:intron | 25.0% |
| !!! | TTTTGTCTTTTTTGACGAAT+TGG | - | chr4.1:16681528-16681547 | MS.gene08319:intron | 25.0% |
| AAAAAATTACTCTCTTGAGG+GGG | + | chr4.1:16683118-16683137 | None:intergenic | 30.0% | |
| AAGACACATCTTAAAACAAG+TGG | + | chr4.1:16683618-16683637 | None:intergenic | 30.0% | |
| ACGAACCCTAGTATTTAATT+TGG | + | chr4.1:16681702-16681721 | None:intergenic | 30.0% | |
| AGCAGCCAAATTAAATACTA+GGG | - | chr4.1:16681694-16681713 | MS.gene08319:intron | 30.0% | |
| CGCTGTAAGAAACATATAAT+CGG | + | chr4.1:16683011-16683030 | None:intergenic | 30.0% | |
| GGAACATTAATGATACATAC+CGG | + | chr4.1:16683597-16683616 | None:intergenic | 30.0% | |
| TATAACCCTAAAACGTGAAA+TGG | + | chr4.1:16681591-16681610 | None:intergenic | 30.0% | |
| TCAATGTCACTGAATTCAAT+TGG | - | chr4.1:16682531-16682550 | MS.gene08319:intron | 30.0% | |
| TGACGACAATAGTAAAAGTT+TGG | + | chr4.1:16683336-16683355 | None:intergenic | 30.0% | |
| TTAAGGTCATGTTAAGCATA+TGG | + | chr4.1:16682384-16682403 | None:intergenic | 30.0% | |
| ! | TCCGTAAAAACATTTTCAAC+AGG | + | chr4.1:16681797-16681816 | None:intergenic | 30.0% |
| ! | TCTCACAAAGATTTTATCTG+TGG | + | chr4.1:16683454-16683473 | None:intergenic | 30.0% |
| !! | AGATGAATACTCATTTTTGC+AGG | - | chr4.1:16682665-16682684 | MS.gene08319:intron | 30.0% |
| !! | ATGCTGATTTATTGGGAAAA+TGG | - | chr4.1:16682272-16682291 | MS.gene08319:CDS | 30.0% |
| !! | ATTTGCCATTTCACGTTTTA+GGG | - | chr4.1:16681583-16681602 | MS.gene08319:intron | 30.0% |
| !! | ATTTTAGAGGAAAATTTGCC+AGG | - | chr4.1:16683071-16683090 | MS.gene08319:intron | 30.0% |
| !! | GCCTGTTGAAAATGTTTTTA+CGG | - | chr4.1:16681793-16681812 | MS.gene08319:intron | 30.0% |
| !! | TGCTGATTTATTGGGAAAAT+GGG | - | chr4.1:16682273-16682292 | MS.gene08319:CDS | 30.0% |
| !! | TTAGTTTGCAACAGAATAGT+TGG | - | chr4.1:16681624-16681643 | MS.gene08319:intron | 30.0% |
| !!! | GTTAACATGATTTTTTGTGC+AGG | - | chr4.1:16682352-16682371 | MS.gene08319:CDS | 30.0% |
| AAAAATTACTCTCTTGAGGG+GGG | + | chr4.1:16683117-16683136 | None:intergenic | 35.0% | |
| ACATGACCTTAAGCTTTACA+AGG | - | chr4.1:16682392-16682411 | MS.gene08319:CDS | 35.0% | |
| ACATTAATGATACATACCGG+TGG | + | chr4.1:16683594-16683613 | None:intergenic | 35.0% | |
| ATGCAGTCATGCAAAAGTTT+CGG | - | chr4.1:16682823-16682842 | MS.gene08319:intron | 35.0% | |
| CAAAAAAAATCCAGGAGGAA+TGG | - | chr4.1:16683045-16683064 | MS.gene08319:intron | 35.0% | |
| CAAAACCCTTGTAAAGCTTA+AGG | + | chr4.1:16682401-16682420 | None:intergenic | 35.0% | |
| CAGCAGCCAAATTAAATACT+AGG | - | chr4.1:16681693-16681712 | MS.gene08319:intron | 35.0% | |
| CATGACCTTAAGCTTTACAA+GGG | - | chr4.1:16682393-16682412 | MS.gene08319:CDS | 35.0% | |
| CATGGAAATTCTATGAGTGT+CGG | - | chr4.1:16682468-16682487 | MS.gene08319:CDS | 35.0% | |
| GAACTGGACAAAAAAAATCC+AGG | - | chr4.1:16683037-16683056 | MS.gene08319:intron | 35.0% | |
| GACATTCACTGATACATACA+CGG | - | chr4.1:16681856-16681875 | MS.gene08319:intron | 35.0% | |
| TAGTAGCCACGTTTGAATTT+AGG | + | chr4.1:16681975-16681994 | None:intergenic | 35.0% | |
| TCATAGAATTTCCATGACCA+GGG | + | chr4.1:16682464-16682483 | None:intergenic | 35.0% | |
| TTCATTTCACAACGATGATG+AGG | - | chr4.1:16682569-16682588 | MS.gene08319:intron | 35.0% | |
| TTGTGAGAGTTTGTGAATCT+AGG | - | chr4.1:16683466-16683485 | MS.gene08319:intron | 35.0% | |
| ! | AATCTAGGATGGAGCTTATT+AGG | - | chr4.1:16683481-16683500 | MS.gene08319:intron | 35.0% |
| ! | ATCTAGGATGGAGCTTATTA+GGG | - | chr4.1:16683482-16683501 | MS.gene08319:intron | 35.0% |
| ! | CTAAAATTTTCCATTCCTCC+TGG | + | chr4.1:16683058-16683077 | None:intergenic | 35.0% |
| ! | GCTGATTTATTGGGAAAATG+GGG | - | chr4.1:16682274-16682293 | MS.gene08319:CDS | 35.0% |
| ! | GGAGGAATGGAAAATTTTAG+AGG | - | chr4.1:16683058-16683077 | MS.gene08319:intron | 35.0% |
| ! | TCATTTTCAATCGTCTTTGC+TGG | - | chr4.1:16683398-16683417 | MS.gene08319:intron | 35.0% |
| !! | CACTTTTTGTGCGTAAAAGA+AGG | + | chr4.1:16682228-16682247 | None:intergenic | 35.0% |
| !! | GATTTGCCATTTCACGTTTT+AGG | - | chr4.1:16681582-16681601 | MS.gene08319:intron | 35.0% |
| AAGAAAAGACCGTCATGGTA+GGG | + | chr4.1:16683534-16683553 | None:intergenic | 40.0% | |
| ATATATCACCTGTGTCTCTG+CGG | + | chr4.1:16682916-16682935 | None:intergenic | 40.0% | |
| ATCTACTTCAGCTTTCGAAC+TGG | + | chr4.1:16682793-16682812 | None:intergenic | 40.0% | |
| ATGCAGCATGCCTATATGTT+AGG | - | chr4.1:16682012-16682031 | MS.gene08319:intron | 40.0% | |
| CAAAGAAGAAAAGACCGTCA+TGG | + | chr4.1:16683539-16683558 | None:intergenic | 40.0% | |
| CGTCAAGAAACGAAAACAAG+AGG | - | chr4.1:16681368-16681387 | MS.gene08319:CDS | 40.0% | |
| CGTTTGAATTTAGGTGGCAA+TGG | + | chr4.1:16681966-16681985 | None:intergenic | 40.0% | |
| CTCATAGAATTTCCATGACC+AGG | + | chr4.1:16682465-16682484 | None:intergenic | 40.0% | |
| CTGGACAAAAAAAATCCAGG+AGG | - | chr4.1:16683040-16683059 | MS.gene08319:intron | 40.0% | |
| GAGAGTTTGTGAATCTAGGA+TGG | - | chr4.1:16683470-16683489 | MS.gene08319:intron | 40.0% | |
| GCAGGATCAATTTGACAATG+TGG | - | chr4.1:16682683-16682702 | MS.gene08319:intron | 40.0% | |
| TAAACTCTCCCTAAGAGTTC+AGG | + | chr4.1:16682143-16682162 | None:intergenic | 40.0% | |
| TAGCCACGTTTGAATTTAGG+TGG | + | chr4.1:16681972-16681991 | None:intergenic | 40.0% | |
| TTGCCACCTAAATTCAAACG+TGG | - | chr4.1:16681966-16681985 | MS.gene08319:intron | 40.0% | |
| TTTCGAACTGGACTCTGAAT+TGG | + | chr4.1:16682781-16682800 | None:intergenic | 40.0% | |
| ! | AAGTGGATTCCTGAACTCTT+AGG | - | chr4.1:16682131-16682150 | MS.gene08319:CDS | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4.1:16681917-16681936 | MS.gene08319:CDS | 40.0% |
| ! | AGTGGATTCCTGAACTCTTA+GGG | - | chr4.1:16682132-16682151 | MS.gene08319:CDS | 40.0% |
| !! | CATTGACTTGCGTTAGACAT+TGG | - | chr4.1:16681892-16681911 | MS.gene08319:CDS | 40.0% |
| !! | TCTGTTTTTCTTCTGTTGCC+AGG | - | chr4.1:16682428-16682447 | MS.gene08319:CDS | 40.0% |
| ACGAAAACAAGAGGAAGAGC+AGG | - | chr4.1:16681377-16681396 | MS.gene08319:CDS | 45.0% | |
| ACGCAAGTCAATGTTGTGAC+TGG | + | chr4.1:16681885-16681904 | None:intergenic | 45.0% | |
| CATTCGACATCCTTCAACCA+AGG | + | chr4.1:16682738-16682757 | None:intergenic | 45.0% | |
| CTCTGACTATTACGACGATG+AGG | - | chr4.1:16682632-16682651 | MS.gene08319:intron | 45.0% | |
| CTTATTAGGGCTGTCATCGT+TGG | - | chr4.1:16683495-16683514 | MS.gene08319:intron | 45.0% | |
| GAAGAAAAGACCGTCATGGT+AGG | + | chr4.1:16683535-16683554 | None:intergenic | 45.0% | |
| GGAGAGTTTACTGCCCATTT+GGG | - | chr4.1:16682153-16682172 | MS.gene08319:CDS | 45.0% | |
| TAATAGTCAGAGCCATCGTC+AGG | + | chr4.1:16682624-16682643 | None:intergenic | 45.0% | |
| TCTTACAGCGACCAAAGAAC+TGG | - | chr4.1:16683021-16683040 | MS.gene08319:intron | 45.0% | |
| TGACAATGTGGATTTGCCTC+CGG | - | chr4.1:16682695-16682714 | MS.gene08319:intron | 45.0% | |
| ! | CTTTTGCATGACTGCATCTG+TGG | + | chr4.1:16682820-16682839 | None:intergenic | 45.0% |
| ! | TTAGTCTTTGCACTTGCGTG+TGG | - | chr4.1:16682196-16682215 | MS.gene08319:CDS | 45.0% |
| ! | TTTTACGGACGACGCATACA+CGG | - | chr4.1:16681808-16681827 | MS.gene08319:intron | 45.0% |
| !! | ACCTTCAATCAGAAGTGTCG+GGG | - | chr4.1:16681919-16681938 | MS.gene08319:CDS | 45.0% |
| !! | ATGAGTGTCGGAGAATCATC+TGG | - | chr4.1:16682480-16682499 | MS.gene08319:CDS | 45.0% |
| !! | CACCTTCAATCAGAAGTGTC+GGG | - | chr4.1:16681918-16681937 | MS.gene08319:CDS | 45.0% |
| !! | CTAAAAAAAATAAAAATAAA+AGG | + | chr4.1:16683223-16683242 | None:intergenic | 5.0% |
| ACAATGTGGATTTGCCTCCG+GGG | - | chr4.1:16682697-16682716 | MS.gene08319:intron | 50.0% | |
| ACCCCGACACTTCTGATTGA+AGG | + | chr4.1:16681923-16681942 | None:intergenic | 50.0% | |
| AGCATCAGTGCCTTGGTTGA+AGG | - | chr4.1:16682725-16682744 | MS.gene08319:intron | 50.0% | |
| ATACATACCGGTGGAACTGC+AGG | + | chr4.1:16683585-16683604 | None:intergenic | 50.0% | |
| CAACATGTCAGTCTCGTGAC+TGG | + | chr4.1:16681837-16681856 | None:intergenic | 50.0% | |
| CTTCTGTTGCCAGGATGCTT+TGG | - | chr4.1:16682437-16682456 | MS.gene08319:CDS | 50.0% | |
| GAAGGATGTCGAATGCAAGC+CGG | - | chr4.1:16682743-16682762 | MS.gene08319:intron | 50.0% | |
| GAATTGGCATGAGAACCAGC+CGG | + | chr4.1:16682765-16682784 | None:intergenic | 50.0% | |
| GACAATGTGGATTTGCCTCC+GGG | - | chr4.1:16682696-16682715 | MS.gene08319:intron | 50.0% | |
| GCACTTGAAGATCCTGACGA+TGG | - | chr4.1:16682609-16682628 | MS.gene08319:intron | 50.0% | |
| GGGAGAGTTTACTGCCCATT+TGG | - | chr4.1:16682152-16682171 | MS.gene08319:CDS | 50.0% | |
| GTCGGAGAATCATCTGGTAG+TGG | - | chr4.1:16682486-16682505 | MS.gene08319:CDS | 50.0% | |
| TACATACCGGTGGAACTGCA+GGG | + | chr4.1:16683584-16683603 | None:intergenic | 50.0% | |
| TTGACGACGACGCCAGAATT+GGG | + | chr4.1:16681354-16681373 | None:intergenic | 50.0% | |
| ! | AAAGTACCCTGCAGTTCCAC+CGG | - | chr4.1:16683575-16683594 | MS.gene08319:intron | 50.0% |
| ACTAATCCCCTCGAGCCTTG+TGG | + | chr4.1:16682181-16682200 | None:intergenic | 55.0% | |
| CAATGTGGATTTGCCTCCGG+GGG | - | chr4.1:16682698-16682717 | MS.gene08319:intron | 55.0% | |
| CTAGGCACTCCCTACCATGA+CGG | - | chr4.1:16683522-16683541 | MS.gene08319:intron | 55.0% | |
| CTTGACGACGACGCCAGAAT+TGG | + | chr4.1:16681355-16681374 | None:intergenic | 55.0% | |
| GACGCCAGAATTGGGGGAAT+CGG | + | chr4.1:16681346-16681365 | None:intergenic | 55.0% | |
| GATGCTTTGGTCCCTGGTCA+TGG | - | chr4.1:16682450-16682469 | MS.gene08319:CDS | 55.0% | |
| GCTGTCATCGTTGGACCTCT+AGG | - | chr4.1:16683504-16683523 | MS.gene08319:intron | 55.0% | |
| GTCTTTGCACTTGCGTGTGG+AGG | - | chr4.1:16682199-16682218 | MS.gene08319:CDS | 55.0% | |
| TGACGACGACGCCAGAATTG+GGG | + | chr4.1:16681353-16681372 | None:intergenic | 55.0% | |
| ! | CTAATCCCCTCGAGCCTTGT+GGG | + | chr4.1:16682180-16682199 | None:intergenic | 55.0% |
| ! | GAGCCTTGTGGGACCCAAAT+GGG | + | chr4.1:16682169-16682188 | None:intergenic | 55.0% |
| ! | GGAACTGCAGGGTACTTTGC+AGG | + | chr4.1:16683573-16683592 | None:intergenic | 55.0% |
| !! | CATGCCGATTCCCCCAATTC+TGG | - | chr4.1:16681339-16681358 | MS.gene08319:CDS | 55.0% |
| !! | GGGTAGAAGCATCAGTGCCT+TGG | - | chr4.1:16682718-16682737 | MS.gene08319:intron | 55.0% |
| !! | TCATGGTAGGGAGTGCCTAG+AGG | + | chr4.1:16683522-16683541 | None:intergenic | 55.0% |
| ACTGATGCTTCTACCCCCGG+AGG | + | chr4.1:16682714-16682733 | None:intergenic | 60.0% | |
| CTGCCCATTTGGGTCCCACA+AGG | - | chr4.1:16682163-16682182 | MS.gene08319:CDS | 60.0% | |
| GACGACGACGCCAGAATTGG+GGG | + | chr4.1:16681352-16681371 | None:intergenic | 60.0% | |
| GATGTCGAATGCAAGCCGGC+TGG | - | chr4.1:16682747-16682766 | MS.gene08319:intron | 60.0% | |
| TGCCAGGATGCTTTGGTCCC+TGG | - | chr4.1:16682444-16682463 | MS.gene08319:CDS | 60.0% | |
| TGCTTCAGCCGCAGAGACAC+AGG | - | chr4.1:16682905-16682924 | MS.gene08319:intron | 60.0% | |
| TTGGGTCCCACAAGGCTCGA+GGG | - | chr4.1:16682171-16682190 | MS.gene08319:CDS | 60.0% | |
| TTTGGGTCCCACAAGGCTCG+AGG | - | chr4.1:16682170-16682189 | MS.gene08319:CDS | 60.0% | |
| ! | CGAGCCTTGTGGGACCCAAA+TGG | + | chr4.1:16682170-16682189 | None:intergenic | 60.0% |
| ! | GACCAGGGACCAAAGCATCC+TGG | + | chr4.1:16682449-16682468 | None:intergenic | 60.0% |
| !! | GGCACTGATGCTTCTACCCC+CGG | + | chr4.1:16682717-16682736 | None:intergenic | 60.0% |
| TGGGTCCCACAAGGCTCGAG+GGG | - | chr4.1:16682172-16682191 | MS.gene08319:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16681324 | 16683650 | 16681324 | ID=MS.gene08319 |
| chr4.1 | mRNA | 16681324 | 16683650 | 16681324 | ID=MS.gene08319.t1;Parent=MS.gene08319 |
| chr4.1 | exon | 16683576 | 16683650 | 16683576 | ID=MS.gene08319.t1.exon1;Parent=MS.gene08319.t1 |
| chr4.1 | CDS | 16683576 | 16683650 | 16683576 | ID=cds.MS.gene08319.t1;Parent=MS.gene08319.t1 |
| chr4.1 | exon | 16682048 | 16682524 | 16682048 | ID=MS.gene08319.t1.exon2;Parent=MS.gene08319.t1 |
| chr4.1 | CDS | 16682048 | 16682524 | 16682048 | ID=cds.MS.gene08319.t1;Parent=MS.gene08319.t1 |
| chr4.1 | exon | 16681882 | 16681945 | 16681882 | ID=MS.gene08319.t1.exon3;Parent=MS.gene08319.t1 |
| chr4.1 | CDS | 16681882 | 16681945 | 16681882 | ID=cds.MS.gene08319.t1;Parent=MS.gene08319.t1 |
| chr4.1 | exon | 16681324 | 16681517 | 16681324 | ID=MS.gene08319.t1.exon4;Parent=MS.gene08319.t1 |
| chr4.1 | CDS | 16681324 | 16681517 | 16681324 | ID=cds.MS.gene08319.t1;Parent=MS.gene08319.t1 |
| Gene Sequence |
| Protein sequence |
