Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063196.t1 | XP_013467022.1 | 95.1 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 7.90E-170 | 606.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063196.t1 | Q9M7I7 | 61.2 | 309 | 111 | 3 | 3 | 302 | 4 | 312 | 1.9e-111 | 403.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063196.t1 | A0A072VGW2 | 95.1 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 5.7e-170 | 606.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene063196 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene063196 | 0.803841 | 2.88E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene063196 | -0.82455 | 7.60E-54 | -1.69E-46 |
| MS.gene050315 | MS.gene063196 | 0.840892 | 6.61E-58 | -1.69E-46 |
| MS.gene050404 | MS.gene063196 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene063196 | 0.825334 | 4.96E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene063196 | -0.834216 | 3.41E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene063196 | 0.804503 | 2.09E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene063196 | 0.809338 | 1.99E-50 | -1.69E-46 |
| MS.gene051171 | MS.gene063196 | 0.854429 | 1.24E-61 | -1.69E-46 |
| MS.gene051208 | MS.gene063196 | 0.852716 | 3.85E-61 | -1.69E-46 |
| MS.gene051240 | MS.gene063196 | 0.806334 | 8.65E-50 | -1.69E-46 |
| MS.gene051242 | MS.gene063196 | 0.847191 | 1.35E-59 | -1.69E-46 |
| MS.gene051244 | MS.gene063196 | 0.841766 | 3.89E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene063196 | 0.843699 | 1.19E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene063196 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene063196 | -0.83687 | 7.26E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene063196 | 0.874159 | 8.39E-68 | -1.69E-46 |
| MS.gene052135 | MS.gene063196 | 0.861317 | 1.12E-63 | -1.69E-46 |
| MS.gene052340 | MS.gene063196 | 0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene063196 | 0.836725 | 7.91E-57 | -1.69E-46 |
| MS.gene052589 | MS.gene063196 | 0.851722 | 7.38E-61 | -1.69E-46 |
| MS.gene052590 | MS.gene063196 | 0.837965 | 3.81E-57 | -1.69E-46 |
| MS.gene052758 | MS.gene063196 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene063196 | 0.995229 | 3.13E-214 | -1.69E-46 |
| MS.gene053971 | MS.gene063196 | 0.835392 | 1.72E-56 | -1.69E-46 |
| MS.gene054102 | MS.gene063196 | 0.868703 | 5.36E-66 | -1.69E-46 |
| MS.gene054110 | MS.gene063196 | 0.874897 | 4.72E-68 | -1.69E-46 |
| MS.gene05413 | MS.gene063196 | 0.812212 | 4.75E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene063196 | 0.802624 | 5.14E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene063196 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene063196 | 0.84818 | 7.22E-60 | -1.69E-46 |
| MS.gene054884 | MS.gene063196 | -0.807599 | 4.67E-50 | -1.69E-46 |
| MS.gene055217 | MS.gene063196 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene063196 | 0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene063196 | 0.87737 | 6.63E-69 | -1.69E-46 |
| MS.gene055539 | MS.gene063196 | 0.825556 | 4.40E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene063196 | 0.878997 | 1.78E-69 | -1.69E-46 |
| MS.gene05556 | MS.gene063196 | 0.804914 | 1.72E-49 | -1.69E-46 |
| MS.gene056305 | MS.gene063196 | 0.844267 | 8.40E-59 | -1.69E-46 |
| MS.gene056351 | MS.gene063196 | 0.835319 | 1.80E-56 | -1.69E-46 |
| MS.gene056442 | MS.gene063196 | 0.816829 | 4.52E-52 | -1.69E-46 |
| MS.gene056451 | MS.gene063196 | 0.811798 | 5.85E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene063196 | 0.927981 | 5.50E-92 | -1.69E-46 |
| MS.gene056664 | MS.gene063196 | 0.85549 | 6.09E-62 | -1.69E-46 |
| MS.gene056723 | MS.gene063196 | 0.804977 | 1.67E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene063196 | 0.820289 | 7.42E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene063196 | 0.834536 | 2.83E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene063196 | 0.838892 | 2.20E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene063196 | 0.858842 | 6.24E-63 | -1.69E-46 |
| MS.gene058444 | MS.gene063196 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene058743 | MS.gene063196 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene058746 | MS.gene063196 | 0.91776 | 3.58E-86 | -1.69E-46 |
| MS.gene059011 | MS.gene063196 | 0.840973 | 6.30E-58 | -1.69E-46 |
| MS.gene059247 | MS.gene063196 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene063196 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene063196 | 0.863675 | 2.10E-64 | -1.69E-46 |
| MS.gene060087 | MS.gene063196 | -0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene063196 | 0.850923 | 1.24E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene063196 | 0.804825 | 1.79E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene063196 | 0.808926 | 2.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063196.t1 | MTR_1g041390 | 95.114 | 307 | 14 | 1 | 1 | 307 | 1 | 306 | 0.0 | 575 |
| MS.gene063196.t1 | MTR_1g041385 | 80.782 | 307 | 58 | 1 | 1 | 307 | 1 | 306 | 3.25e-176 | 489 |
| MS.gene063196.t1 | MTR_6g082500 | 45.631 | 309 | 149 | 6 | 6 | 306 | 15 | 312 | 3.16e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063196.t1 | AT5G43860 | 60.518 | 309 | 113 | 3 | 3 | 302 | 4 | 312 | 1.01e-137 | 392 |
| MS.gene063196.t1 | AT1G19670 | 44.863 | 292 | 155 | 5 | 8 | 296 | 18 | 306 | 5.49e-82 | 251 |
Find 58 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTAACTTGTCAAAATT+TGG | 0.166079 | 1.4:+25876768 | None:intergenic |
| GTTGCAATCAAGAGAGATTT+TGG | 0.211333 | 1.4:+25878276 | None:intergenic |
| GATATGGCAACATTGGTTAT+TGG | 0.252852 | 1.4:-25876570 | MS.gene063196:CDS |
| GCAACATTGGTTATTGGTTC+TGG | 0.258641 | 1.4:-25876564 | MS.gene063196:CDS |
| AACTGGATCAACTCCTATTA+TGG | 0.288193 | 1.4:+25876662 | None:intergenic |
| TTTCCTCTCTTAGTTGTATA+CGG | 0.291769 | 1.4:-25876889 | MS.gene063196:intron |
| CTGTAGCTGCAATAACAAAT+TGG | 0.301199 | 1.4:-25876833 | MS.gene063196:CDS |
| TTGGTTATTGGTTCTGGTTT+AGG | 0.306609 | 1.4:-25876558 | MS.gene063196:CDS |
| TCATTCATTTGATTACGATA+TGG | 0.311804 | 1.4:-25876586 | MS.gene063196:CDS |
| CCTTTATCCATTCCATCAAC+TGG | 0.334016 | 1.4:+25876645 | None:intergenic |
| GCGAATGTGAGAAACCTTCT+TGG | 0.345248 | 1.4:-25876467 | MS.gene063196:CDS |
| GTTTCCTCCTTGTGCACCTA+AGG | 0.368936 | 1.4:-25876514 | MS.gene063196:CDS |
| GATATTTGTTGGAGGAGTTA+TGG | 0.375257 | 1.4:-25876328 | MS.gene063196:CDS |
| TGTTCACGTACACAACAATA+TGG | 0.376449 | 1.4:-25878388 | MS.gene063196:intron |
| TAAATCTCTTCAGTTATATC+AGG | 0.384754 | 1.4:+25876858 | None:intergenic |
| GATGATACTAAAGGAGTTAG+AGG | 0.384847 | 1.4:-25876402 | MS.gene063196:CDS |
| CCAGTTGATGGAATGGATAA+AGG | 0.394237 | 1.4:-25876645 | MS.gene063196:CDS |
| ATCAACCTTTAGTAGCTTAG+TGG | 0.402980 | 1.4:+25878414 | None:intergenic |
| ATTGAGCATGTTGCTTCTCA+TGG | 0.404351 | 1.4:-25878174 | MS.gene063196:CDS |
| CTTCATTGTCATTGCTCCTC+AGG | 0.404622 | 1.4:-25878151 | MS.gene063196:intron |
| CCTCCAACAAATATCCTCAT+AGG | 0.439805 | 1.4:+25876336 | None:intergenic |
| GGGAAATCTCCACCTTCAAT+AGG | 0.443716 | 1.4:+25878252 | None:intergenic |
| AGTTATTGTTTATGTAAGAA+TGG | 0.447160 | 1.4:-25876372 | MS.gene063196:CDS |
| TTGATTGCAACTCCTATTGA+AGG | 0.448310 | 1.4:-25878264 | MS.gene063196:CDS |
| TGAGGAACATAGGTGAGAAT+TGG | 0.464534 | 1.4:+25876606 | None:intergenic |
| ATAGGAGTTGATCCAGTTGA+TGG | 0.466790 | 1.4:-25876657 | MS.gene063196:CDS |
| TTTCCTCCTTGTGCACCTAA+GGG | 0.470069 | 1.4:-25876513 | MS.gene063196:CDS |
| TTATGGTCATGTTGATATGT+TGG | 0.487257 | 1.4:-25876427 | MS.gene063196:CDS |
| AAACCTATGAGGATATTTGT+TGG | 0.491421 | 1.4:-25876339 | MS.gene063196:CDS |
| TCTTAGTTGTATACGGTGGC+TGG | 0.500060 | 1.4:-25876882 | MS.gene063196:intron |
| ATAACAAATTGGCTATCTAA+AGG | 0.506043 | 1.4:-25876822 | MS.gene063196:CDS |
| TATGTAAGAATGGTGAATCA+AGG | 0.508849 | 1.4:-25876362 | MS.gene063196:CDS |
| TTTGACAAGTTAGCACTTGG+TGG | 0.520012 | 1.4:-25876762 | MS.gene063196:CDS |
| TGATTACGATATGGCAACAT+TGG | 0.527494 | 1.4:-25876577 | MS.gene063196:CDS |
| TCCTCATGATTGACACCCTT+AGG | 0.545231 | 1.4:+25876498 | None:intergenic |
| AGTTGATCCAGTTGATGGAA+TGG | 0.545451 | 1.4:-25876652 | MS.gene063196:CDS |
| TTCTTGAAAGCTTATTTGCA+TGG | 0.546906 | 1.4:-25876300 | MS.gene063196:CDS |
| CTATACCACTAAGCTACTAA+AGG | 0.552949 | 1.4:-25878419 | MS.gene063196:CDS |
| TAATCAAATTTCATCTCAAG+AGG | 0.556121 | 1.4:+25876231 | None:intergenic |
| ATATCGTAATCAAATGAATG+AGG | 0.572490 | 1.4:+25876588 | None:intergenic |
| ATCAAATGAATGAGGAACAT+AGG | 0.578505 | 1.4:+25876596 | None:intergenic |
| CCTATGAGGATATTTGTTGG+AGG | 0.580420 | 1.4:-25876336 | MS.gene063196:CDS |
| GTGAATCAAGGAAACCTATG+AGG | 0.584276 | 1.4:-25876350 | MS.gene063196:CDS |
| GGAACATAGGTGAGAATTGG+TGG | 0.587964 | 1.4:+25876609 | None:intergenic |
| GTGCACAAGGAGGAAACAAA+GGG | 0.590331 | 1.4:+25876520 | None:intergenic |
| TTAGCCACAAAATACCAAGA+AGG | 0.593683 | 1.4:+25876453 | None:intergenic |
| TTGGTGGTCATAGTCGCGGC+GGG | 0.594950 | 1.4:-25876746 | MS.gene063196:CDS |
| ATTGCAACTCCTATTGAAGG+TGG | 0.601589 | 1.4:-25878261 | MS.gene063196:CDS |
| GGTGCACAAGGAGGAAACAA+AGG | 0.615241 | 1.4:+25876519 | None:intergenic |
| ATGATACTAAAGGAGTTAGA+GGG | 0.619958 | 1.4:-25876401 | MS.gene063196:CDS |
| TTATTTGCATGGTGATAATG+TGG | 0.630656 | 1.4:-25876289 | MS.gene063196:CDS |
| CCTCTCTTAGTTGTATACGG+TGG | 0.634151 | 1.4:-25876886 | MS.gene063196:intron |
| ACCTAAGGGTGTCAATCATG+AGG | 0.653818 | 1.4:-25876499 | MS.gene063196:CDS |
| CTTGGTGGTCATAGTCGCGG+CGG | 0.660141 | 1.4:-25876747 | MS.gene063196:CDS |
| GCACTTGGTGGTCATAGTCG+CGG | 0.661508 | 1.4:-25876750 | MS.gene063196:CDS |
| TTGACACCCTTAGGTGCACA+AGG | 0.662635 | 1.4:+25876507 | None:intergenic |
| ATGTTGGATGATGATACTAA+AGG | 0.689048 | 1.4:-25876411 | MS.gene063196:CDS |
| ACACCCTTAGGTGCACAAGG+AGG | 0.758140 | 1.4:+25876510 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAATCATA+AGG | + | chr1.4:25877283-25877302 | None:intergenic | 10.0% |
| !! | AATTTCTTATAAAATCATAA+GGG | + | chr1.4:25877282-25877301 | None:intergenic | 10.0% |
| !! | ATATTATAACATAAGAAAAT+TGG | - | chr1.4:25877166-25877185 | MS.gene063196:intron | 10.0% |
| !! | AACAATAAAATGTTTATTTG+GGG | + | chr1.4:25877120-25877139 | None:intergenic | 15.0% |
| !! | ACAACAATAAAATGTTTATT+TGG | + | chr1.4:25877122-25877141 | None:intergenic | 15.0% |
| !! | ATTTCTTATAAAATCATAAG+GGG | + | chr1.4:25877281-25877300 | None:intergenic | 15.0% |
| !! | CAACAATAAAATGTTTATTT+GGG | + | chr1.4:25877121-25877140 | None:intergenic | 15.0% |
| !! | TAATCATTAAAAACATTGTT+AGG | - | chr1.4:25876692-25876711 | MS.gene063196:CDS | 15.0% |
| !! | TACATATTAAAATGTCAAAT+AGG | + | chr1.4:25876559-25876578 | None:intergenic | 15.0% |
| !!! | TTTTAATGATTATGTGAAAT+TGG | + | chr1.4:25876684-25876703 | None:intergenic | 15.0% |
| !! | AAATTGAAATTTGAAGATGT+TGG | + | chr1.4:25877212-25877231 | None:intergenic | 20.0% |
| !! | ACAAGAATTGAAATGAAATA+TGG | + | chr1.4:25877366-25877385 | None:intergenic | 20.0% |
| !! | ACAATAAAATGTTTATTTGG+GGG | + | chr1.4:25877119-25877138 | None:intergenic | 20.0% |
| !! | AGTTATTGTTTATGTAAGAA+TGG | - | chr1.4:25878306-25878325 | MS.gene063196:intron | 20.0% |
| !! | TAGAAAATTGTAGAATCATT+GGG | - | chr1.4:25876811-25876830 | MS.gene063196:CDS | 20.0% |
| !!! | TAAATTGTGAGTTTTTTAAG+TGG | + | chr1.4:25877400-25877419 | None:intergenic | 20.0% |
| !!! | TCAAAATTTGGTTTTATGTT+TGG | + | chr1.4:25877901-25877920 | None:intergenic | 20.0% |
| !!! | TCCATTAAGTCTTATAAATA+AGG | + | chr1.4:25876958-25876977 | None:intergenic | 20.0% |
| !!! | TCCTTATTTATAAGACTTAA+TGG | - | chr1.4:25876954-25876973 | MS.gene063196:intron | 20.0% |
| !!! | TTTCTTTTTTGTTTTTTGTC+AGG | + | chr1.4:25877659-25877678 | None:intergenic | 20.0% |
| ! | ACATTGTTAGGAGAATATAA+TGG | - | chr1.4:25876704-25876723 | MS.gene063196:CDS | 25.0% |
| ! | ATAACAAATTGGCTATCTAA+AGG | - | chr1.4:25877856-25877875 | MS.gene063196:intron | 25.0% |
| ! | ATATCGTAATCAAATGAATG+AGG | + | chr1.4:25878093-25878112 | None:intergenic | 25.0% |
| ! | ATCTTAGAAAACATGTCTAA+TGG | - | chr1.4:25877495-25877514 | MS.gene063196:intron | 25.0% |
| ! | CACTTCAAATACACAAAATA+AGG | - | chr1.4:25877464-25877483 | MS.gene063196:intron | 25.0% |
| ! | GTAGAAAATTGTAGAATCAT+TGG | - | chr1.4:25876810-25876829 | MS.gene063196:CDS | 25.0% |
| ! | TAAATCTCTTCAGTTATATC+AGG | + | chr1.4:25877823-25877842 | None:intergenic | 25.0% |
| ! | TAATCAAATTTCATCTCAAG+AGG | + | chr1.4:25878450-25878469 | None:intergenic | 25.0% |
| ! | TCATTCATTTGATTACGATA+TGG | - | chr1.4:25878092-25878111 | MS.gene063196:intron | 25.0% |
| ! | TGTTGTTAGAAAATTTGAGT+TGG | - | chr1.4:25877136-25877155 | MS.gene063196:intron | 25.0% |
| ! | TTATAAGAAATTTCAGTGCT+AGG | - | chr1.4:25877290-25877309 | MS.gene063196:intron | 25.0% |
| !! | CTAAAATTTTCAGCCATAAT+AGG | - | chr1.4:25878003-25878022 | MS.gene063196:intron | 25.0% |
| !! | TAAGATTCTTAGGATTTTGT+TGG | + | chr1.4:25877038-25877057 | None:intergenic | 25.0% |
| !!! | AAATTTGGTTTTATGTTTGG+TGG | + | chr1.4:25877898-25877917 | None:intergenic | 25.0% |
| !!! | GTTAGTAATGTTTTTGAAAC+TGG | - | chr1.4:25876233-25876252 | MS.gene063196:CDS | 25.0% |
| AAAAAATGGTGCAATGTCTA+TGG | + | chr1.4:25877240-25877259 | None:intergenic | 30.0% | |
| AAAATGTTTATTTGGGGGTT+TGG | + | chr1.4:25877114-25877133 | None:intergenic | 30.0% | |
| AAACCTATGAGGATATTTGT+TGG | - | chr1.4:25878339-25878358 | MS.gene063196:intron | 30.0% | |
| ATCAAATGAATGAGGAACAT+AGG | + | chr1.4:25878085-25878104 | None:intergenic | 30.0% | |
| ATCCTAAGAATCTTAACACA+TGG | - | chr1.4:25877043-25877062 | MS.gene063196:intron | 30.0% | |
| ATGATACTAAAGGAGTTAGA+GGG | - | chr1.4:25878277-25878296 | MS.gene063196:CDS | 30.0% | |
| ATGTTGGATGATGATACTAA+AGG | - | chr1.4:25878267-25878286 | MS.gene063196:CDS | 30.0% | |
| CATGTAGAAAAAGTAGAAGT+GGG | + | chr1.4:25876449-25876468 | None:intergenic | 30.0% | |
| GATTCGTTGTAGTGAAAAAA+TGG | + | chr1.4:25877254-25877273 | None:intergenic | 30.0% | |
| TAGAACTGTTGGGAAAAAAT+TGG | + | chr1.4:25877750-25877769 | None:intergenic | 30.0% | |
| TAGTTAATAGTTAGTGGAGT+TGG | + | chr1.4:25877004-25877023 | None:intergenic | 30.0% | |
| TATAGGTCAATCAAACACAT+GGG | - | chr1.4:25877323-25877342 | MS.gene063196:intron | 30.0% | |
| TATGTAAGAATGGTGAATCA+AGG | - | chr1.4:25878316-25878335 | MS.gene063196:intron | 30.0% | |
| TTAGCACACATGAACTATAT+AGG | + | chr1.4:25876350-25876369 | None:intergenic | 30.0% | |
| TTATGGTCATGTTGATATGT+TGG | - | chr1.4:25878251-25878270 | MS.gene063196:CDS | 30.0% | |
| TTCACCAAAATAGAACTGTT+GGG | + | chr1.4:25877760-25877779 | None:intergenic | 30.0% | |
| TTCTTGAAAGCTTATTTGCA+TGG | - | chr1.4:25878378-25878397 | MS.gene063196:intron | 30.0% | |
| TTTCACCAAAATAGAACTGT+TGG | + | chr1.4:25877761-25877780 | None:intergenic | 30.0% | |
| TTTCCTCTCTTAGTTGTATA+CGG | - | chr1.4:25877789-25877808 | MS.gene063196:intron | 30.0% | |
| ! | AGTGCTAACTTGTCAAAATT+TGG | + | chr1.4:25877913-25877932 | None:intergenic | 30.0% |
| ! | TATTTTGTGGCTAAGGATTA+TGG | - | chr1.4:25878234-25878253 | MS.gene063196:CDS | 30.0% |
| ! | TTATTTGCATGGTGATAATG+TGG | - | chr1.4:25878389-25878408 | MS.gene063196:CDS | 30.0% |
| ! | TTTTCCCAACAGTTCTATTT+TGG | - | chr1.4:25877753-25877772 | MS.gene063196:intron | 30.0% |
| !! | AATTTTGACAAGTTAGCACT+TGG | - | chr1.4:25877913-25877932 | MS.gene063196:intron | 30.0% |
| !! | GAGGATTAGTTAATAGTTAG+TGG | + | chr1.4:25877010-25877029 | None:intergenic | 30.0% |
| !! | TAGGATTTTGTTGGTTAATG+AGG | + | chr1.4:25877029-25877048 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAGGTAGCATAT+TGG | + | chr1.4:25877648-25877667 | None:intergenic | 30.0% |
| AACTGGATCAACTCCTATTA+TGG | + | chr1.4:25878019-25878038 | None:intergenic | 35.0% | |
| AGATTCACACACATAATGTG+TGG | + | chr1.4:25877623-25877642 | None:intergenic | 35.0% | |
| AGCCATGTGTTAAGATTCTT+AGG | + | chr1.4:25877048-25877067 | None:intergenic | 35.0% | |
| ATCAACCTTTAGTAGCTTAG+TGG | + | chr1.4:25876267-25876286 | None:intergenic | 35.0% | |
| CCATGTAGAAAAAGTAGAAG+TGG | + | chr1.4:25876450-25876469 | None:intergenic | 35.0% | |
| CTATACCACTAAGCTACTAA+AGG | - | chr1.4:25876259-25876278 | MS.gene063196:CDS | 35.0% | |
| CTGTAGCTGCAATAACAAAT+TGG | - | chr1.4:25877845-25877864 | MS.gene063196:intron | 35.0% | |
| GATGATACTAAAGGAGTTAG+AGG | - | chr1.4:25878276-25878295 | MS.gene063196:CDS | 35.0% | |
| GTATAGGTCAATCAAACACA+TGG | - | chr1.4:25877322-25877341 | MS.gene063196:intron | 35.0% | |
| TGATTACGATATGGCAACAT+TGG | - | chr1.4:25878101-25878120 | MS.gene063196:intron | 35.0% | |
| TGTTCACGTACACAACAATA+TGG | - | chr1.4:25876290-25876309 | MS.gene063196:CDS | 35.0% | |
| TTAGCCACAAAATACCAAGA+AGG | + | chr1.4:25878228-25878247 | None:intergenic | 35.0% | |
| TTGATTGCAACTCCTATTGA+AGG | - | chr1.4:25876414-25876433 | MS.gene063196:CDS | 35.0% | |
| ! | ACAATTTTCTACACTGTGCA+AGG | + | chr1.4:25876802-25876821 | None:intergenic | 35.0% |
| ! | GAAACCTTCTTGGTATTTTG+TGG | - | chr1.4:25878221-25878240 | MS.gene063196:CDS | 35.0% |
| ! | GATATGGCAACATTGGTTAT+TGG | - | chr1.4:25878108-25878127 | MS.gene063196:intron | 35.0% |
| ! | GATATTTGTTGGAGGAGTTA+TGG | - | chr1.4:25878350-25878369 | MS.gene063196:intron | 35.0% |
| ! | GTTGCAATCAAGAGAGATTT+TGG | + | chr1.4:25876405-25876424 | None:intergenic | 35.0% |
| ! | TTCTTGGTATTTTGTGGCTA+AGG | - | chr1.4:25878227-25878246 | MS.gene063196:CDS | 35.0% |
| !! | TTGGTTATTGGTTCTGGTTT+AGG | - | chr1.4:25878120-25878139 | MS.gene063196:intron | 35.0% |
| !!! | CCACTTCTACTTTTTCTACA+TGG | - | chr1.4:25876447-25876466 | MS.gene063196:CDS | 35.0% |
| ATTGCAACTCCTATTGAAGG+TGG | - | chr1.4:25876417-25876436 | MS.gene063196:CDS | 40.0% | |
| CCTCCAACAAATATCCTCAT+AGG | + | chr1.4:25878345-25878364 | None:intergenic | 40.0% | |
| CCTTTATCCATTCCATCAAC+TGG | + | chr1.4:25878036-25878055 | None:intergenic | 40.0% | |
| CTACCAACTGGCTACAATTA+CGG | + | chr1.4:25877544-25877563 | None:intergenic | 40.0% | |
| GTCAAATAGGAACTAACCTG+AGG | + | chr1.4:25876546-25876565 | None:intergenic | 40.0% | |
| GTGAATCAAGGAAACCTATG+AGG | - | chr1.4:25878328-25878347 | MS.gene063196:intron | 40.0% | |
| TACCAACTGGCTACAATTAC+GGG | + | chr1.4:25877543-25877562 | None:intergenic | 40.0% | |
| TATCACGGACATTATGTGCA+GGG | - | chr1.4:25877565-25877584 | MS.gene063196:intron | 40.0% | |
| TGAGGAACATAGGTGAGAAT+TGG | + | chr1.4:25878075-25878094 | None:intergenic | 40.0% | |
| TTTGACAAGTTAGCACTTGG+TGG | - | chr1.4:25877916-25877935 | MS.gene063196:intron | 40.0% | |
| ! | ATAGGAGTTGATCCAGTTGA+TGG | - | chr1.4:25878021-25878040 | MS.gene063196:intron | 40.0% |
| ! | ATTGAGCATGTTGCTTCTCA+TGG | - | chr1.4:25876504-25876523 | MS.gene063196:CDS | 40.0% |
| ! | ATTTTCTACACTGTGCAAGG+AGG | + | chr1.4:25876799-25876818 | None:intergenic | 40.0% |
| ! | CCTATGAGGATATTTGTTGG+AGG | - | chr1.4:25878342-25878361 | MS.gene063196:intron | 40.0% |
| ! | GCAATCAAGAGAGATTTTGG+TGG | + | chr1.4:25876402-25876421 | None:intergenic | 40.0% |
| ! | TGCTAGGACTATGAGAGTAT+AGG | - | chr1.4:25877306-25877325 | MS.gene063196:intron | 40.0% |
| !! | AGTTGATCCAGTTGATGGAA+TGG | - | chr1.4:25878026-25878045 | MS.gene063196:intron | 40.0% |
| !! | ATCAAGAGAGATTTTGGTGG+TGG | + | chr1.4:25876399-25876418 | None:intergenic | 40.0% |
| !! | CCAGTTGATGGAATGGATAA+AGG | - | chr1.4:25878033-25878052 | MS.gene063196:intron | 40.0% |
| !! | GCAACATTGGTTATTGGTTC+TGG | - | chr1.4:25878114-25878133 | MS.gene063196:intron | 40.0% |
| !! | GTTTGCAAGAAGCACTTCTA+GGG | - | chr1.4:25876595-25876614 | MS.gene063196:CDS | 40.0% |
| !! | TGTTTGCAAGAAGCACTTCT+AGG | - | chr1.4:25876594-25876613 | MS.gene063196:CDS | 40.0% |
| ACACATAATGTGTGGAGAGG+TGG | + | chr1.4:25877615-25877634 | None:intergenic | 45.0% | |
| ATCACGGACATTATGTGCAG+GGG | - | chr1.4:25877566-25877585 | MS.gene063196:intron | 45.0% | |
| CACACACATAATGTGTGGAG+AGG | + | chr1.4:25877618-25877637 | None:intergenic | 45.0% | |
| CCACCGTATACAACTAAGAG+AGG | + | chr1.4:25877795-25877814 | None:intergenic | 45.0% | |
| CCTCTCTTAGTTGTATACGG+TGG | - | chr1.4:25877792-25877811 | MS.gene063196:intron | 45.0% | |
| CTATCACGGACATTATGTGC+AGG | - | chr1.4:25877564-25877583 | MS.gene063196:intron | 45.0% | |
| CTTCATTGTCATTGCTCCTC+AGG | - | chr1.4:25876527-25876546 | MS.gene063196:CDS | 45.0% | |
| GCGAATGTGAGAAACCTTCT+TGG | - | chr1.4:25878211-25878230 | MS.gene063196:CDS | 45.0% | |
| GGAACATAGGTGAGAATTGG+TGG | + | chr1.4:25878072-25878091 | None:intergenic | 45.0% | |
| GGGAAATCTCCACCTTCAAT+AGG | + | chr1.4:25876429-25876448 | None:intergenic | 45.0% | |
| GTGCACAAGGAGGAAACAAA+GGG | + | chr1.4:25878161-25878180 | None:intergenic | 45.0% | |
| TCCTCATGATTGACACCCTT+AGG | + | chr1.4:25878183-25878202 | None:intergenic | 45.0% | |
| TCTTAGTTGTATACGGTGGC+TGG | - | chr1.4:25877796-25877815 | MS.gene063196:intron | 45.0% | |
| TTTCCTCCTTGTGCACCTAA+GGG | - | chr1.4:25878165-25878184 | MS.gene063196:CDS | 45.0% | |
| !! | ACCTAAGGGTGTCAATCATG+AGG | - | chr1.4:25878179-25878198 | MS.gene063196:CDS | 45.0% |
| !! | TAGCCAGTTGGTAGCTATCA+CGG | - | chr1.4:25877550-25877569 | MS.gene063196:intron | 45.0% |
| AACCCTATACCCCTAACCTC+TGG | - | chr1.4:25877070-25877089 | MS.gene063196:intron | 50.0% | |
| GGTGCACAAGGAGGAAACAA+AGG | + | chr1.4:25878162-25878181 | None:intergenic | 50.0% | |
| GTCCCGTAATTGTAGCCAGT+TGG | - | chr1.4:25877538-25877557 | MS.gene063196:intron | 50.0% | |
| GTTTCCTCCTTGTGCACCTA+AGG | - | chr1.4:25878164-25878183 | MS.gene063196:CDS | 50.0% | |
| TGGTTTGAGCCAGAGGTTAG+GGG | + | chr1.4:25877082-25877101 | None:intergenic | 50.0% | |
| TGTCCGTGATAGCTACCAAC+TGG | + | chr1.4:25877556-25877575 | None:intergenic | 50.0% | |
| TTGACACCCTTAGGTGCACA+AGG | + | chr1.4:25878174-25878193 | None:intergenic | 50.0% | |
| ! | AGCCAGAGGTTAGGGGTATA+GGG | + | chr1.4:25877075-25877094 | None:intergenic | 50.0% |
| ! | CTGGTTTGAGCCAGAGGTTA+GGG | + | chr1.4:25877083-25877102 | None:intergenic | 50.0% |
| !! | ACTGGTTTGAGCCAGAGGTT+AGG | + | chr1.4:25877084-25877103 | None:intergenic | 50.0% |
| ACACCCTTAGGTGCACAAGG+AGG | + | chr1.4:25878171-25878190 | None:intergenic | 55.0% | |
| CGGACATTATGTGCAGGGGT+CGG | - | chr1.4:25877570-25877589 | MS.gene063196:intron | 55.0% | |
| GACATTATGTGCAGGGGTCG+GGG | - | chr1.4:25877572-25877591 | MS.gene063196:intron | 55.0% | |
| GGACATTATGTGCAGGGGTC+GGG | - | chr1.4:25877571-25877590 | MS.gene063196:intron | 55.0% | |
| GTGGAGAGGTGGAGAATCTG+AGG | + | chr1.4:25877604-25877623 | None:intergenic | 55.0% | |
| ! | GAGCCAGAGGTTAGGGGTAT+AGG | + | chr1.4:25877076-25877095 | None:intergenic | 55.0% |
| ! | GCACTTGGTGGTCATAGTCG+CGG | - | chr1.4:25877928-25877947 | MS.gene063196:intron | 55.0% |
| ! | TGGGGGTTTGGTAGCTCAAC+TGG | + | chr1.4:25877102-25877121 | None:intergenic | 55.0% |
| !! | GCTCAACTGGTTTGAGCCAG+AGG | + | chr1.4:25877089-25877108 | None:intergenic | 55.0% |
| ! | CTTGGTGGTCATAGTCGCGG+CGG | - | chr1.4:25877931-25877950 | MS.gene063196:intron | 60.0% |
| ! | TTGGTGGTCATAGTCGCGGC+GGG | - | chr1.4:25877932-25877951 | MS.gene063196:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 25876221 | 25878479 | 25876221 | ID=MS.gene063196 |
| chr1.4 | mRNA | 25876221 | 25878479 | 25876221 | ID=MS.gene063196.t1;Parent=MS.gene063196 |
| chr1.4 | exon | 25878389 | 25878479 | 25878389 | ID=MS.gene063196.t1.exon1;Parent=MS.gene063196.t1 |
| chr1.4 | CDS | 25878389 | 25878479 | 25878389 | ID=cds.MS.gene063196.t1;Parent=MS.gene063196.t1 |
| chr1.4 | exon | 25878152 | 25878306 | 25878152 | ID=MS.gene063196.t1.exon2;Parent=MS.gene063196.t1 |
| chr1.4 | CDS | 25878152 | 25878306 | 25878152 | ID=cds.MS.gene063196.t1;Parent=MS.gene063196.t1 |
| chr1.4 | exon | 25876221 | 25876898 | 25876221 | ID=MS.gene063196.t1.exon3;Parent=MS.gene063196.t1 |
| chr1.4 | CDS | 25876221 | 25876898 | 25876221 | ID=cds.MS.gene063196.t1;Parent=MS.gene063196.t1 |
| Gene Sequence |
| Protein sequence |
