AlfalfaGEDB | MS.gene066012

M. sativa cultivar XinJiangDaYe / MS.gene066012

KEGG: K10886
GO: GO:0003674 GO:0003676 GO:0003677 GO:0004857 GO:0004866 GO:0004867 GO:0005488 GO:0005575 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0030234 GO:0030414 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0061134 GO:0061135 GO:0071704 GO:0090304 GO:0097159 GO:0098772 GO:0110165 GO:1901360 GO:1901363
PFAM: PF00280.21 PF06632.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066012.t1	XP_003590794.1	87.6	250	31	0	1	250	1	250	4.10E-118	434.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066012.t1	Q682V0	63.5	192	70	0	4	195	22	213	2.0e-68	260.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066012.t1	G7I3Z1	87.6	250	31	0	1	250	1	250	3.0e-118	434.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene066012	0.822123	2.80E-53	-1.69E-46
MS.gene04919	MS.gene066012	0.833782	4.38E-56	-1.69E-46
MS.gene04920	MS.gene066012	0.853242	2.72E-61	-1.69E-46
MS.gene049283	MS.gene066012	0.826094	3.27E-54	-1.69E-46
MS.gene049499	MS.gene066012	0.804071	2.58E-49	-1.69E-46
MS.gene049680	MS.gene066012	0.852334	4.94E-61	-1.69E-46
MS.gene05029	MS.gene066012	0.819099	1.39E-52	-1.69E-46
MS.gene050945	MS.gene066012	0.843127	1.70E-58	-1.69E-46
MS.gene050955	MS.gene066012	0.80227	6.07E-49	-1.69E-46
MS.gene051637	MS.gene066012	0.823341	1.46E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066012.t1	MTR_1g075330	93.600	250	16	1	250	1	250	6.08e-173	479
MS.gene066012.t1	MTR_1g075380	88.889	63	7	246	308	9	71	3.76e-30	109
MS.gene066012.t1	MTR_1g075340	85.714	63	9	246	308	8	70	1.50e-29	107
MS.gene066012.t1	MTR_1g075340	85.714	63	9	246	308	8	70	1.50e-29	107
MS.gene066012.t1	MTR_1g075410	77.465	71	16	238	308	2	72	1.84e-29	107
MS.gene066012.t1	MTR_5g090250	82.540	63	11	246	308	8	70	3.50e-27	101
MS.gene066012.t1	MTR_5g090250	82.540	63	11	246	308	8	70	3.50e-27	101
MS.gene066012.t1	MTR_1g070335	57.143	63	27	246	308	8	70	3.41e-16	72.4
MS.gene066012.t1	MTR_5g045470	52.381	63	30	246	308	7	69	1.04e-12	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066012.t1	AT3G23100	58.898	236	92	2	4	238	22	253	7.53e-96	284
MS.gene066012.t1	AT3G23100	58.898	236	92	2	4	238	22	253	7.53e-96	284
MS.gene066012.t1	AT1G61410	53.153	111	47	2	129	238	1	107	6.33e-28	105
MS.gene066012.t1	AT5G43580	48.052	77	38	1	232	308	25	99	5.30e-16	72.8
MS.gene066012.t1	AT2G38870	52.381	63	30	0	246	308	8	70	3.03e-15	69.7
MS.gene066012.t1	AT2G38900	45.070	71	37	1	238	308	20	88	5.93e-12	61.2
MS.gene066012.t1	AT3G46860	39.024	82	43	1	227	308	11	85	3.03e-11	59.3
MS.gene066012.t1	AT2G38900	46.032	63	34	0	246	308	11	73	5.02e-11	58.2

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Find 73 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTATTACTAGTTCT+TGG	0.254859	1.2:+58071867	MS.gene066012:CDS
AATGCCATCATTGTGCTAGA+AGG	0.471882	1.2:+58073261	MS.gene066012:CDS
AATTCAGAGGGAGAATCCAT+TGG	0.572843	1.2:+58073236	MS.gene066012:CDS
AATTCCACGTACTCTTCCAC+CGG	0.602320	1.2:-58068051	None:intergenic
AATTGTCTGAGCGGTATTTG+GGG	0.650141	1.2:+58068070	MS.gene066012:CDS
ACAATGATGGCATTCACCAA+TGG	0.650325	1.2:-58073252	None:intergenic
ACTAGTTCTTGGAAGGATGT+TGG	0.457050	1.2:+58071878	MS.gene066012:CDS
ACTTACGCAACGACAGGGTT+TGG	0.351229	1.2:+58073301	MS.gene066012:CDS
AGAAATATTGGACTTTCTCA+TGG	0.495276	1.2:+58068983	MS.gene066012:CDS
AGAAGAATCAATATTCGTGA+AGG	0.557463	1.2:+58067828	MS.gene066012:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAACAAACAGTTGGC+AGG	-	chr1.2:58068156-58068175	None:intergenic	30.0%
AAAACAATGGAGAGAGATAA+AGG	-	chr1.2:58072281-58072300	None:intergenic	30.0%
AAAACTAAATAAAAGGGAGG+AGG	-	chr1.2:58070950-58070969	None:intergenic	30.0%
AAAAGTGAAACCATAGTTCT+AGG	-	chr1.2:58072108-58072127	None:intergenic	30.0%
AAAATGTCTGATGAATGCAA+AGG	+	chr1.2:58073055-58073074	MS.gene066012:intron	30.0%
AAACTAAATAAAAGGGAGGA+GGG	-	chr1.2:58070949-58070968	None:intergenic	30.0%
AACTTAAAGTATGTCAATGG+AGG	+	chr1.2:58070095-58070114	MS.gene066012:intron	30.0%
AAGGCATGTGATATACAAAA+TGG	-	chr1.2:58069742-58069761	None:intergenic	30.0%
AATCTAAAAACAATGTCGGT+AGG	+	chr1.2:58072396-58072415	MS.gene066012:intron	30.0%
AATGTTTAACGGTGTGAAAT+TGG	+	chr1.2:58069182-58069201	MS.gene066012:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	58067781	58073374	58067781	ID=MS.gene066012
chr1.2	mRNA	58067781	58073374	58067781	ID=MS.gene066012.t1;Parent=MS.gene066012
chr1.2	exon	58067781	58067916	58067781	ID=MS.gene066012.t1.exon1;Parent=MS.gene066012.t1
chr1.2	CDS	58067781	58067916	58067781	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1
chr1.2	exon	58068007	58068149	58068007	ID=MS.gene066012.t1.exon2;Parent=MS.gene066012.t1
chr1.2	CDS	58068007	58068149	58068007	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1
chr1.2	exon	58068897	58069025	58068897	ID=MS.gene066012.t1.exon3;Parent=MS.gene066012.t1
chr1.2	CDS	58068897	58069025	58068897	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1
chr1.2	exon	58071272	58071394	58071272	ID=MS.gene066012.t1.exon4;Parent=MS.gene066012.t1
chr1.2	CDS	58071272	58071394	58071272	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1
chr1.2	exon	58071704	58071905	58071704	ID=MS.gene066012.t1.exon5;Parent=MS.gene066012.t1
chr1.2	CDS	58071704	58071905	58071704	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1
chr1.2	exon	58073181	58073374	58073181	ID=MS.gene066012.t1.exon6;Parent=MS.gene066012.t1
chr1.2	CDS	58073181	58073374	58073181	ID=cds.MS.gene066012.t1;Parent=MS.gene066012.t1

Gene Sequence

>MS.gene066012

ATGGAAGGGAAGAAAAGACACACATGCTTGAAACTACAACTCACCGAAGAAGAATCAATATTCGTGAAGGGTACATGGTTTAATACTCACTTCAACCTCTCCATCACCGACGGTTTCACCGCTTGGAACTGCAACGGTACTACTATTTCTAATAACCCTTTTCACTAATCTATCTTCAAGTTTTGATTTTGATTTTGATTTGTGGGGTTGTTGAATTTTTTTTTAGCATCGGAAGATGAAGTGAAGCAGCGTGCTGCTCAGTGGGACCAGCCGGTGGAAGAGTACGTGGAATTGTCTGAGCGGTATTTGGGGTTTCGACAACCTGGGTCTGTTTATGCATTTGCTGATGCTGGTGATGCTCATAAGAGGGTACCTGCCAACTGTTTGTTATTTTTTGTAGACACCAACACTGACACTGACACGTTGACCTTAATAATAATTTGAGAAAAGAAAGTACTTCAGTGTAATTATATTTGTCAGTGTCGGATGCCTTTTGATTAGAAGAGTTGGTGTCATAGAATGTGGTATGATTGGTAGATAATTGACTGCAGTAAACATATTGTAAAGGCTTATCAAACCGGTGTGCTTGAAAGGTCTTCTGTTTGGAGAAGTCAACCCCTTAAATACATATCTGGATCAACCAAAACAAAAAAAAATATGTTTTAATTGGTAGAAGAAAATAATAATATGAAGTGAAATAGAAGGATACTAGTGTTAATTTTTTGAAATAGGATAAAAAATGTCACATGAAGTAATATGTTTAGTTCACTTGAACCCAATACCCACGGTTTAAGTAGTGCTTGCGTTAATGGTTGCGGTTACGTTGGGGGTCAAATATGGTTGATGTGTGTGGCCCCAATCGCAGTCACAGAGACAGCGAAAAACCTGATGTTGCAGTTGTAGACCTCTGTTTAAAACCTTACCAATGTATTTGTTTTTCTTCGATGTGAGGGTTTTTTTTGGGCTAGATATTCCATCGGAAAATATCTAATCAATTGTACAATAATTTTATAATATTCCATTTTTTATATCATTCTGTTTCACTCACCATTGAATATTCAGTCACGGAGACGGTCCTTTCACTACTGGCTATTAATGTTTGTGTGAATGTTGCAGTTGTCGTGGACGTTTGAGAAGGGAGGAATGACACTGCATTGGAGATGGAAATGCATGCAGTCTCCTGATTGTAAGAAAACTACGGCAGAAATATTGGACTTTCTCATGGATGCAAACATAAGGCTTAGTGTAAGATAACATTCTGCTTAACTTTTCTTTATGCATTTTTCATACAAGAAATTTCAATCAGCCTCACTTGTATGTTTCGTGTTTCTCGATTTGTTTATTATGGTTATTGCTTGGAGATGTCATGCTTGGGATGATAATGGTAACAAATAGGAATGTAATGTTTAACGGTGTGAAATTGGAGTTCAAAAGGAGGAATTATCAATTCTGTTACTACTTATTTTATGTGAAATGGTTTTTGATAGGTGAAATGGTAAAATCCTGTATATCATTGTTTCATTCCCAGTTTGTTGTTGTATTCAATTCGTGCAATTATTGTGTTATGCTCTTTGTGAGAAATCATTGTTTAGAGAAAGCACGATAAGCATTCTTGTTAGTTGTTACTCATAACCTCAATTCTAATCTTGAGAGAAAGTGCAAACATAGCTAGAACTAAATTGGGAAAATATTAATCCTTATTTAATCATATTGTGTTCAAATTCTACCATTTAGGTAGAAATTTTAAATTACAGTTGGACTAAACATAACCTAATGCTAAGCTGGTCAAAAGAATACTGTTGTGTACTAGTGTGCAATCAATACCTCTTACATTATTAATTACCTTTAAATTTGAAATTAAAATTATTGTTCTTCCTGAAATTTGACATTTTCATGAAATATGCTATACTATCAAGGATCTACTAAGTGGCTTGTGAGCGGGTAGGTTCATTTATTCTCCATTTTGTATATCACATGCCTTGTCTGGTCATATTCATACATCTGAAATGAGACACAAATAAGTTGGCTGTTATTTATGGAGTCAAATGATATCAACAGATCATAACAGTTGGTCTAATGTATCATACTTTTAATGTTCAGTAAATTACCAAAGATGAAAAAGACAACTTCTTTCCTCATAGAAAGCCACAAAATGTATCTTTTTGATAATATAAAATGCCTTTTTTGAATTTCATCTCACTAGAAACATGAGTCTTAAACTTGAGTAAATATGGGGTTTCTAATTGCCATATGTTCCTTATTGCCATATGATGGTTCTCAGGTGGAATCAATATGCCTATTTTATGGATATTGAAACTTAAAGTATGTCAATGGAGGTGTTTGGTGTGTCATATTTGTTGCCTGTTTCTTATTTTTCTAGTTTAGATATTTAGTCCCACATCGTTAATATCAACTACTGTAATGGTGTTTATATTAAGCAAGAGTGCTCATAGTGCAACACATGGATTGAGATGATGTGGATGGGCCCATGCCAAGTGCTGGGCTCAGGAAAGTCCCCGGGCCCAATCTGCAGTGCCGCCAAAGAAAATTGGCCGATTCATACAGTTATTCACATGGTCCTTGTGACTAACAGAACGGGGCTTATGTCTCCAATCCAACAGTTTTTTTTTTTGATCATTCACATGGTCCTTGTGACAAGTGTGGAGCCTTTGCCAGTGCCGCCAAAGAAAATTGGCCGATTCATACAGTCATTCACATGGTCCTTGTGACTAACAGAACGGGGCTTATGTCTCCAATCCAACAGTTTTTTTTTTTTGATCATTCACATGGTCCTTGTGACTAACAGAACAGGGCTTATCTCTCCAATCCAACAATTTTTTTTTTTTTGATATTTTGATAAAAAATTATAATACCTTAATCATCTTTTGTAAAAATCATACTAGACTTAAAGATCAATTGCACGCTCTTTTTCATTCACATGGTCCTTGTGACTAACAGAACGGGGCTTATGTCTCCAATCCAACAATTTTTTTTTTGATATTTTGATAAAAAATTATAATACCTTAATCATCTTTTGTAAAAATCATACTAGACTTAAAGATCAATTGCACGCTCTTTTCGTATGAACGAGATCAGGGAAATAATCTTTCTCATTTTTTTCAAATCCTGCTTGATTTGGAATAGTCAGTACTTGTATAGTTGTATCCCTCCTCCCTTTTATTTAGTTTTGAACATCATAGTTGGCCATGTTTGATTATATGCATTTTTCCCAAGAATTCGATTCCAAAGAAATAACCCTTTTATACATAAATAGAAGAGAAATCGCTCTTCCGAGGGTTTACCCTTCATAATAGAGTCACTACTATATTCACAATGTTTACAATATTCAATAATGTTCGACTCTAACATTGTACATTATTCTATTTAATTATACAAATAGCCCTATAATAACAACCTCCAATTAACTAACTAACTTTTATAACTACTTTAACTACAATTGTCCATTATTCTAACTCCCAAAACATCCACAGGAAGAAGTTGTCATAAAAACGGAATTGTTTGAGAAGACAAAATTAGAAGCTGAGAAGTGCTTGGCTCAGAGTGAGAGAATAGCCAATGAAAGGGTGGAATTTGAATCTCAAATCTATACAAAGGTAACTTTTTTACTTTCACTTTGTAGTTGTTTTACTGTTTGTCCATTGAAAATTTTGACCTGTATGGTTTACCGGCATAGCATGGTTACACCCTGTGTCACAGTAAAAAGCCATTGGTCCTACTCCTGATAGATTGCTGAAGCAACTTATTGATTGAACTAGTTGTAGTTTTTCCAATATTGACCTCATTTTACCTTGTTGTTTTATGATGCTTTTAATTACTTGTACTATGTTAATATTACAAAACTTTCGAATTTGCTCTCTGTTTTCATGTATTCAACTGAATCTGCATATGTTATTCTGTTTTAGTTTCTGGGTGTCTTAAATTCAAAGAAAGCAAAACTGAGAGAGCTTCGAGATCAGCTGTCAAAACAAGATAACGGCAACAAATCTCTTCAAGAGGAAGAAGACCCAGAAAAAACTGAGAGTTTTGATGAAGAAAGTGATGATGACAAAAGTGATGAAGATCCTCAAAAGTGTATTACTAGTTCTTGGAAGGATGTTGGAGCAAGTAAGCGTTCTCGTCCAAGGAGAACTAGACTCACATGACAAATTAGGGGAACTAGACTCACATGACAAATTTTCTGCACTCGCAAGTGTTTCGTTTTCACCATGGATTTCATATTTGTACAAAATTCACTTAAGTTGGATTACCACAAGCCCCTTGTGATATCTCTGTCTCATAATTGGTGGTGCAAACTAAATGCACCCCTAGAACTATGGTTTCACTTTTGAACTCTTACAAAAGAAGCGATAGTATTACAACCCCTACAATCAAGCATGGTAATACAAAGAAGAGAAATGATATTTTGACAACCATTTTTTGACAACTTTTGGACAACTTTCTCTCTCATACTCACATGATGTTGTTATCATCTCTCTTCCTTTATCTCTCTCCATTGTTTTTGACCAATGAGAAGTGAGAAAAACAAGATTGTCAACAAAGTTGTCATCAAATGGATGTCAAAATATCGTTACTCTACAAAGAATTGTAGATTGCAAATCTAAAAACAATGTCGGTAGGTGCATCTATAATCTATAATATATGTGGACACCTTTTGAAAATATAAATATTTATTTATCAATTACTGAAAATAGTTTGTATATGTCATACGTGTCTCAACTCCCAACGCTTTGAAAATCGAAACCAAGTTCCGTGTAGATAATAACAGAGTTCCTTTGAACAGTCATGCAAAATATATTTTACTTTGTTCTCGTAGTATAATATGCTGCAAGTTCAATCCAATTCTTATCTTTTCTTGTATGTATTTAATCAATCCTTATCTTTATGACGTGTTTGTGCACACATGTTAAATCCAAAATGGCTGCACGAACACCTAGTGAGAACAAATTGTCAAGTGCCAATTCTATAACCATTTTGTTACCTAAAAAAATTAACATATATGCTTCTTAAACAAGAACACTGATTCCGTGATATCGTAAAATTTGGACAATATAATACACAAGTCAAATGATGGACCGTTCAACAACCTATGAGATTCCTGTAATAAAAAAAAACCCATAAGGTTGCTACCAAAAACTACTATAAATACACTATTCATTGCAATGCATTATATATCCAAACACAAGAAGAATTGCAAAAAGAAAGAAAAAGGCACACAAAATAGTCATACATATTGAAGGATCAAAAAGGAAGAAAAAAATGTCTGATGAATGCAAAGGTAAGGTGTTTACATGCATATATATGATATGAATAATAAATTAAATGGTTTGTGAAATTTTTATTATAATTTGATGGTTGAATTAATCAATATTTTGTTCTCAGCTAAGAGCTCATGGCCAGAGTTGGTTGGAGTGGAAGGAAAGGTAGCAGAAGCTACAATTCAGAGGGAGAATCCATTGGTGAATGCCATCATTGTGCTAGAAGGATCTTCTGTCACCGACGACTTACGCAACGACAGGGTTTGGGTTTGGGTTAATAAAGATGGAATTGTCACTCAGGTTCCAACAATTGGATAG

Protein sequence

>MS.gene066012.t1

MEGKKRHTCLKLQLTEEESIFVKGTWFNTHFNLSITDGFTAWNCNASEDEVKQRAAQWDQPVEEYVELSERYLGFRQPGSVYAFADAGDAHKRLSWTFEKGGMTLHWRWKCMQSPDCKKTTAEILDFLMDANIRLSEEVVIKTELFEKTKLEAEKCLAQSERIANERVEFESQIYTKFLGVLNSKKAKLRELRDQLSKQDNGNKSLQEEEDPEKTESFDEESDDDKSDEDPQKCITSSWKDVGATKSSWPELVGVEGKVAEATIQRENPLVNAIIVLEGSSVTDDLRNDRVWVWVNKDGIVTQVPTIG