Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066865.t1 | RHN74177.1 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 6.80E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066865.t1 | Q9LI74 | 28.7 | 342 | 211 | 6 | 16 | 332 | 91 | 424 | 1.3e-19 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066865.t1 | A0A396JGG7 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 4.9e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene066865 | 0.816852 | 4.47E-52 | -1.69E-46 |
| MS.gene049150 | MS.gene066865 | 0.857694 | 1.37E-62 | -1.69E-46 |
| MS.gene049151 | MS.gene066865 | 0.848509 | 5.86E-60 | -1.69E-46 |
| MS.gene049153 | MS.gene066865 | 0.853606 | 2.14E-61 | -1.69E-46 |
| MS.gene049260 | MS.gene066865 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene066865 | 0.816529 | 5.28E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene066865 | 0.803805 | 2.92E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene066865 | 0.841274 | 5.25E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene066865 | 0.837492 | 5.04E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene066865 | 0.852747 | 3.77E-61 | -1.69E-46 |
| MS.gene050226 | MS.gene066865 | 0.823975 | 1.04E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene066865 | 0.812325 | 4.49E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene066865 | 0.813272 | 2.78E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene066865 | 0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene066865 | -0.802902 | 4.50E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene066865 | 0.846724 | 1.82E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene066865 | 0.848063 | 7.78E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene066865 | 0.841262 | 5.29E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene066865 | 0.835671 | 1.46E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene066865 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene066865 | 0.861031 | 1.36E-63 | -1.69E-46 |
| MS.gene052340 | MS.gene066865 | 0.826371 | 2.81E-54 | -1.69E-46 |
| MS.gene053184 | MS.gene066865 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene066865 | 0.801523 | 8.65E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene066865 | 0.846803 | 1.73E-59 | -1.69E-46 |
| MS.gene054184 | MS.gene066865 | 0.857234 | 1.87E-62 | -1.69E-46 |
| MS.gene054185 | MS.gene066865 | 0.86137 | 1.08E-63 | -1.69E-46 |
| MS.gene054349 | MS.gene066865 | 0.815581 | 8.59E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene066865 | 0.804922 | 1.71E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene066865 | 0.832565 | 8.79E-56 | -1.69E-46 |
| MS.gene055133 | MS.gene066865 | 0.807266 | 5.50E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene066865 | 0.800663 | 1.30E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene066865 | 0.839691 | 1.36E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene066865 | 0.814083 | 1.85E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene066865 | 0.82534 | 4.95E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene066865 | 0.818792 | 1.63E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene066865 | 0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene066865 | 0.844699 | 6.43E-59 | -1.69E-46 |
| MS.gene057754 | MS.gene066865 | 0.864125 | 1.52E-64 | -1.69E-46 |
| MS.gene058002 | MS.gene066865 | 0.843782 | 1.13E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene066865 | 0.837794 | 4.21E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene066865 | 0.832429 | 9.50E-56 | -1.69E-46 |
| MS.gene058710 | MS.gene066865 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene066865 | 0.82349 | 1.35E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene066865 | 0.822298 | 2.55E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene066865 | 0.808799 | 2.59E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene066865 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene059124 | MS.gene066865 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene066865 | 0.807804 | 4.23E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene066865 | 0.857159 | 1.97E-62 | -1.69E-46 |
| MS.gene059420 | MS.gene066865 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene066865 | 0.87223 | 3.73E-67 | -1.69E-46 |
| MS.gene05984 | MS.gene066865 | 0.851936 | 6.41E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene066865 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene066865 | 0.836336 | 9.93E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066865.t1 | MTR_0170s0030 | 89.555 | 517 | 52 | 2 | 4 | 518 | 31 | 547 | 0.0 | 879 |
| MS.gene066865.t1 | MTR_5g053270 | 36.254 | 331 | 189 | 4 | 56 | 367 | 126 | 453 | 2.79e-41 | 159 |
| MS.gene066865.t1 | MTR_1g093850 | 31.214 | 346 | 199 | 6 | 56 | 367 | 133 | 473 | 1.90e-32 | 133 |
| MS.gene066865.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 113 | 458 | 1.53e-14 | 76.6 |
| MS.gene066865.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 72 | 417 | 2.02e-14 | 76.3 |
| MS.gene066865.t1 | MTR_8g014900 | 22.630 | 327 | 233 | 5 | 61 | 367 | 144 | 470 | 3.47e-14 | 75.9 |
| MS.gene066865.t1 | MTR_1g016290 | 40.426 | 94 | 51 | 1 | 194 | 282 | 207 | 300 | 2.49e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066865.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066865.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066865.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066865.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066865.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 117 | 558 | 2.29e-41 | 160 |
| MS.gene066865.t1 | AT3G25690 | 29.973 | 367 | 214 | 8 | 121 | 448 | 53 | 415 | 1.57e-30 | 127 |
| MS.gene066865.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
| MS.gene066865.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTATAAATGAGA+TGG | - | 16764:27225-27244 | MS.gene066865:CDS | 10.0% |
| !!! | ATAATTTTAATAATACAAGA+TGG | + | 16764:27579-27598 | MS.gene066865:intergenic | 10.0% |
| !!! | CTAAATTTTGTTAAAATAAT+AGG | - | 16764:28037-28056 | MS.gene066865:intron | 10.0% |
| !! | AACAAAAAATAACACATAAA+AGG | + | 16764:26816-26835 | MS.gene066865:intergenic | 15.0% |
| !! | ATTCTTATGTTCATTAATAT+GGG | - | 16764:27532-27551 | MS.gene066865:CDS | 15.0% |
| !! | TACCTTAAATTTATTGTTTA+AGG | - | 16764:28096-28115 | MS.gene066865:intron | 15.0% |
| !! | TATTAAAGAAAAAATAGAAG+AGG | - | 16764:27171-27190 | MS.gene066865:CDS | 15.0% |
| !! | TATTCTTATGTTCATTAATA+TGG | - | 16764:27531-27550 | MS.gene066865:CDS | 15.0% |
| !!! | AAGTAATGTTGATTAATTAT+AGG | + | 16764:27998-28017 | MS.gene066865:intergenic | 15.0% |
| !!! | TAAAGACAAATCAATTTTTT+GGG | + | 16764:26871-26890 | MS.gene066865:intergenic | 15.0% |
| !!! | TAATAAAAAGCATAATAGAA+AGG | - | 16764:28339-28358 | MS.gene066865:CDS | 15.0% |
| !!! | TTAAAGACAAATCAATTTTT+TGG | + | 16764:26872-26891 | MS.gene066865:intergenic | 15.0% |
| !! | AATCAACATTACTTAAGTTA+TGG | - | 16764:28004-28023 | MS.gene066865:intron | 20.0% |
| !! | AATCCTACAAAAAAAATCAT+TGG | - | 16764:27947-27966 | MS.gene066865:intron | 20.0% |
| !! | AGCCTTAAACAATAAATTTA+AGG | + | 16764:28101-28120 | MS.gene066865:intergenic | 20.0% |
| !! | ATCCTACAAAAAAAATCATT+GGG | - | 16764:27948-27967 | MS.gene066865:intron | 20.0% |
| !! | TGCTTAATAAATTGAAAAGA+TGG | - | 16764:28554-28573 | MS.gene066865:CDS | 20.0% |
| !! | TTGTTAAAATAATAGGTAGT+AGG | - | 16764:28044-28063 | MS.gene066865:intron | 20.0% |
| !! | TTTCAATTTATTAAGCAAAC+TGG | + | 16764:28551-28570 | MS.gene066865:intergenic | 20.0% |
| !!! | AAACAATAAATTTAAGGTAG+AGG | + | 16764:28095-28114 | MS.gene066865:intergenic | 20.0% |
| ! | AAATTGGTTATTCAGATGAT+AGG | - | 16764:29001-29020 | MS.gene066865:intron | 25.0% |
| ! | AATACAAAATTACAAGCAGA+GGG | - | 16764:26997-27016 | MS.gene066865:CDS | 25.0% |
| ! | AATTGAAGGTTGTGAAAATA+TGG | - | 16764:26940-26959 | MS.gene066865:CDS | 25.0% |
| ! | ACATTCAACACTAATCTATT+GGG | - | 16764:27656-27675 | MS.gene066865:intron | 25.0% |
| ! | AGAAAAGAGTTTATAAAGAG+TGG | + | 16764:27810-27829 | MS.gene066865:intergenic | 25.0% |
| ! | ATATAAGAGTTTATCCATTC+GGG | + | 16764:27710-27729 | MS.gene066865:intergenic | 25.0% |
| ! | ATTCAATAAGTTTCCTTTCA+AGG | + | 16764:27030-27049 | MS.gene066865:intergenic | 25.0% |
| ! | ATTTGCTCATTTCATCATAT+TGG | + | 16764:28906-28925 | MS.gene066865:intergenic | 25.0% |
| ! | GATATAAGAGTTTATCCATT+CGG | + | 16764:27711-27730 | MS.gene066865:intergenic | 25.0% |
| ! | TAATACAAAATTACAAGCAG+AGG | - | 16764:26996-27015 | MS.gene066865:CDS | 25.0% |
| ! | TATTGAATTGAATAGACTGA+AGG | - | 16764:27042-27061 | MS.gene066865:CDS | 25.0% |
| !! | TATGGATTATATCACTGAAA+AGG | - | 16764:26958-26977 | MS.gene066865:CDS | 25.0% |
| !!! | TGCTTGATAATTTTTTCTAC+AGG | - | 16764:28150-28169 | MS.gene066865:intron | 25.0% |
| AAATGAGATGGAAAGTAAGA+AGG | - | 16764:27237-27256 | MS.gene066865:CDS | 30.0% | |
| AATACAACCAGAAACTATGT+TGG | - | 16764:27915-27934 | MS.gene066865:intron | 30.0% | |
| AATCAAATCTATCAAAGCCA+AGG | - | 16764:28674-28693 | MS.gene066865:CDS | 30.0% | |
| ATGCTAAAAGGACTAACAAA+AGG | + | 16764:29065-29084 | MS.gene066865:intergenic | 30.0% | |
| ATGTTCATTAATATGGGACT+TGG | - | 16764:27538-27557 | MS.gene066865:CDS | 30.0% | |
| ATTGAATTGCCACAAATTGA+AGG | - | 16764:26926-26945 | MS.gene066865:CDS | 30.0% | |
| CACATTCAACACTAATCTAT+TGG | - | 16764:27655-27674 | MS.gene066865:intron | 30.0% | |
| GAAAGTAAGAAGGATATGAA+TGG | - | 16764:27247-27266 | MS.gene066865:CDS | 30.0% | |
| GAATTCAACTATTACATGCT+TGG | - | 16764:28855-28874 | MS.gene066865:CDS | 30.0% | |
| GAGCAAATCATATGAAAATG+TGG | - | 16764:28918-28937 | MS.gene066865:intron | 30.0% | |
| GGTTTCTCTAGATTCATAAA+TGG | + | 16764:28721-28740 | MS.gene066865:intergenic | 30.0% | |
| TACCATATTAAAAGCAGACT+AGG | + | 16764:27609-27628 | MS.gene066865:intergenic | 30.0% | |
| TGATCCTGAAATATGCTAAA+AGG | + | 16764:29077-29096 | MS.gene066865:intergenic | 30.0% | |
| TGCTCACAAAACAATCATAT+TGG | + | 16764:27870-27889 | MS.gene066865:intergenic | 30.0% | |
| TTATGCTAGTGATGTAATAC+AGG | - | 16764:26788-26807 | MS.gene066865:CDS | 30.0% | |
| ! | AACAAGTTGAAATATTGCAG+AGG | - | 16764:28239-28258 | MS.gene066865:intron | 30.0% |
| ! | AGATTAGTGTTGAATGTGAA+AGG | + | 16764:27653-27672 | MS.gene066865:intergenic | 30.0% |
| ! | CACTTATTTCTTCTTGTATC+TGG | + | 16764:28189-28208 | MS.gene066865:intergenic | 30.0% |
| ! | GATTAGTGTTGAATGTGAAA+GGG | + | 16764:27652-27671 | MS.gene066865:intergenic | 30.0% |
| ! | TAGTCCTTTTAGCATATTTC+AGG | - | 16764:29070-29089 | MS.gene066865:CDS | 30.0% |
| ! | TTTTCACAACCTTCAATTTG+TGG | + | 16764:26938-26957 | MS.gene066865:intergenic | 30.0% |
| !! | AACCTAGTCTGCTTTTAATA+TGG | - | 16764:27604-27623 | MS.gene066865:CDS | 30.0% |
| !! | AGATAGAGCATTACAAGTTT+TGG | - | 16764:27375-27394 | MS.gene066865:CDS | 30.0% |
| !! | GATTTTGAGGAAATGGAAAA+TGG | - | 16764:26759-26778 | MS.gene066865:CDS | 30.0% |
| !! | TCTGCTTTTAATATGGTACT+TGG | - | 16764:27611-27630 | MS.gene066865:CDS | 30.0% |
| !! | TGAACATGATTTTGAGGAAA+TGG | - | 16764:26752-26771 | MS.gene066865:CDS | 30.0% |
| !!! | CACCCAATGATTTTTTTTGT+AGG | + | 16764:27953-27972 | MS.gene066865:intergenic | 30.0% |
| !!! | TACAAGTTTTGGAAATGAAG+AGG | - | 16764:27386-27405 | MS.gene066865:CDS | 30.0% |
| AACGAGAAGAATTTGCGAAA+GGG | - | 16764:28595-28614 | MS.gene066865:CDS | 35.0% | |
| AAGAAACAATTGCTTCCCTT+CGG | - | 16764:27134-27153 | MS.gene066865:CDS | 35.0% | |
| AAGAGCTTGAATTGGAAAAG+AGG | - | 16764:27416-27435 | MS.gene066865:CDS | 35.0% | |
| ACTACTAGAAGAACTTTCGA+GGG | + | 16764:28506-28525 | MS.gene066865:intergenic | 35.0% | |
| ACTAGCAAGAAACAAATCAG+AGG | - | 16764:27465-27484 | MS.gene066865:CDS | 35.0% | |
| AGAGCTTGAATTGGAAAAGA+GGG | - | 16764:27417-27436 | MS.gene066865:CDS | 35.0% | |
| AGCAATAGCAAGGATCAAAT+TGG | - | 16764:28985-29004 | MS.gene066865:intron | 35.0% | |
| AGCATATGAAAAGCCATCTT+TGG | + | 16764:28297-28316 | MS.gene066865:intergenic | 35.0% | |
| CAATTCTTTGCCTGAAATCT+TGG | + | 16764:28383-28402 | MS.gene066865:intergenic | 35.0% | |
| CTTGGAGTTGAAGAAACAAA+AGG | - | 16764:28873-28892 | MS.gene066865:CDS | 35.0% | |
| GAATAAAGGTAGCAATAGCA+AGG | - | 16764:28975-28994 | MS.gene066865:intron | 35.0% | |
| GACGAATTAGCGAAGTATAA+CGG | - | 16764:27313-27332 | MS.gene066865:CDS | 35.0% | |
| GAGAAACAAAGAGCTTGAAT+TGG | - | 16764:27408-27427 | MS.gene066865:CDS | 35.0% | |
| GATTCCTCTTCAGAGAATAA+AGG | - | 16764:28961-28980 | MS.gene066865:intron | 35.0% | |
| TGTTATGCAAGAAGAAGTTG+AGG | - | 16764:28798-28817 | MS.gene066865:CDS | 35.0% | |
| TTCCCAACTGAAAATGCAAT+TGG | - | 16764:27081-27100 | MS.gene066865:CDS | 35.0% | |
| ! | AGACTCTGAACATGATTTTG+AGG | - | 16764:26746-26765 | MS.gene066865:CDS | 35.0% |
| ! | CTCCAATTGCATTTTCAGTT+GGG | + | 16764:27086-27105 | MS.gene066865:intergenic | 35.0% |
| ! | GATGGCTTTTCATATGCTTA+AGG | - | 16764:28299-28318 | MS.gene066865:intron | 35.0% |
| ! | TCTCCAATTGCATTTTCAGT+TGG | + | 16764:27087-27106 | MS.gene066865:intergenic | 35.0% |
| ! | TGTTTTGTGAGCAAAGTGAA+AGG | - | 16764:27877-27896 | MS.gene066865:intron | 35.0% |
| !!! | AATTTTGGTTTCGAACCGAA+GGG | + | 16764:27152-27171 | MS.gene066865:intergenic | 35.0% |
| !!! | TAATTTTGGTTTCGAACCGA+AGG | + | 16764:27153-27172 | MS.gene066865:intergenic | 35.0% |
| AAGAGCTTGTGTACCAAAGA+TGG | - | 16764:28281-28300 | MS.gene066865:intron | 40.0% | |
| ACTGGCACATCTAATCTAGT+CGG | + | 16764:27786-27805 | MS.gene066865:intergenic | 40.0% | |
| AGAGGGAAATAAGCCTTGAA+AGG | - | 16764:27014-27033 | MS.gene066865:CDS | 40.0% | |
| CAACGAGAAGAATTTGCGAA+AGG | - | 16764:28594-28613 | MS.gene066865:CDS | 40.0% | |
| CCATGAACCAACATAGTTTC+TGG | + | 16764:27925-27944 | MS.gene066865:intergenic | 40.0% | |
| GAATTGGAAAAGAGGGAAGT+AGG | - | 16764:27424-27443 | MS.gene066865:CDS | 40.0% | |
| GACACTCTCTTCAATCTTGT+CGG | + | 16764:28745-28764 | MS.gene066865:intergenic | 40.0% | |
| GACTACTAGAAGAACTTTCG+AGG | + | 16764:28507-28526 | MS.gene066865:intergenic | 40.0% | |
| GAGTTTATAAAGAGTGGCAC+TGG | + | 16764:27804-27823 | MS.gene066865:intergenic | 40.0% | |
| TCAACATCTGATCGTTGACA+TGG | + | 16764:27276-27295 | MS.gene066865:intergenic | 40.0% | |
| TGATAGGATTAAAAGCCTGC+TGG | - | 16764:29017-29036 | MS.gene066865:CDS | 40.0% | |
| TGTCTCTTCGAATGCTACAT+TGG | - | 16764:28453-28472 | MS.gene066865:CDS | 40.0% | |
| ! | ACGTAGGTTTTCAATGTCGA+TGG | - | 16764:28648-28667 | MS.gene066865:CDS | 40.0% |
| ! | GCTACCTTTATTCTCTGAAG+AGG | + | 16764:28968-28987 | MS.gene066865:intergenic | 40.0% |
| !! | CCAGAAACTATGTTGGTTCA+TGG | - | 16764:27922-27941 | MS.gene066865:intron | 40.0% |
| !! | GAGAGTGTCTTTCAGTGATT+CGG | - | 16764:28756-28775 | MS.gene066865:CDS | 40.0% |
| !! | TCACTTCTTTTGCTTGCTGA+AGG | + | 16764:26720-26739 | MS.gene066865:intergenic | 40.0% |
| AAGCCAAGGAAAAGTTGTGC+TGG | - | 16764:28688-28707 | MS.gene066865:CDS | 45.0% | |
| AATCTATTGGGTTTAGCGCG+TGG | - | 16764:27668-27687 | MS.gene066865:intron | 45.0% | |
| ACTAGAAGAACTTTCGAGGG+TGG | + | 16764:28503-28522 | MS.gene066865:intergenic | 45.0% | |
| ACTCTCTTCAATCTTGTCGG+TGG | + | 16764:28742-28761 | MS.gene066865:intergenic | 45.0% | |
| CAAGACTGCACCAAGATTTC+AGG | - | 16764:28370-28389 | MS.gene066865:CDS | 45.0% | |
| GAAAACCTACGTATCAGTCC+AGG | + | 16764:28640-28659 | MS.gene066865:intergenic | 45.0% | |
| GAGAAGAATTTGCGAAAGGG+TGG | - | 16764:28598-28617 | MS.gene066865:CDS | 45.0% | |
| GATTTCTTGGATGACCCGAA+TGG | - | 16764:27693-27712 | MS.gene066865:intron | 45.0% | |
| GCAGAGGAACAGATTTGACA+TGG | - | 16764:28255-28274 | MS.gene066865:intron | 45.0% | |
| ! | TTAGCGCGTGGTTGATTTCT+TGG | - | 16764:27680-27699 | MS.gene066865:intron | 45.0% |
| !! | GTATAACGGTGCTACTGCTA+TGG | - | 16764:27327-27346 | MS.gene066865:CDS | 45.0% |
| !!! | TATTTTTTCTTTAATAATTT+TGG | + | 16764:27167-27186 | MS.gene066865:intergenic | 5.0% |
| CCAAGGAAAAGTTGTGCTGG+TGG | - | 16764:28691-28710 | MS.gene066865:CDS | 50.0% | |
| GGAAATAGACCAAGCAGACC+TGG | - | 16764:28619-28638 | MS.gene066865:CDS | 50.0% | |
| ! | CCACCAGCACAACTTTTCCT+TGG | + | 16764:28694-28713 | MS.gene066865:intergenic | 50.0% |
| ! | CTTGGTGCAGTCTTGTCTTG+TGG | + | 16764:28365-28384 | MS.gene066865:intergenic | 50.0% |
| ATACTAGCAGCTGCACCAGC+AGG | + | 16764:29035-29054 | MS.gene066865:intergenic | 55.0% | |
| CGTATCAGTCCAGGTCTGCT+TGG | + | 16764:28631-28650 | MS.gene066865:intergenic | 55.0% | |
| GCAGACCTGGACTGATACGT+AGG | - | 16764:28632-28651 | MS.gene066865:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16764 | gene | 26714 | 29101 | 26714 | ID=MS.gene066865 |
| 16764 | mRNA | 26714 | 29101 | 26714 | ID=MS.gene066865.t1;Parent=MS.gene066865 |
| 16764 | exon | 29006 | 29101 | 29006 | ID=MS.gene066865.t1.exon1;Parent=MS.gene066865.t1 |
| 16764 | CDS | 29006 | 29101 | 29006 | ID=cds.MS.gene066865.t1;Parent=MS.gene066865.t1 |
| 16764 | exon | 28329 | 28913 | 28329 | ID=MS.gene066865.t1.exon2;Parent=MS.gene066865.t1 |
| 16764 | CDS | 28329 | 28913 | 28329 | ID=cds.MS.gene066865.t1;Parent=MS.gene066865.t1 |
| 16764 | exon | 26714 | 27643 | 26714 | ID=MS.gene066865.t1.exon3;Parent=MS.gene066865.t1 |
| 16764 | CDS | 26714 | 27643 | 26714 | ID=cds.MS.gene066865.t1;Parent=MS.gene066865.t1 |
| Gene Sequence |
| Protein sequence |
