Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066866.t1 | RHN74177.1 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 6.80E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066866.t1 | Q9LI74 | 28.7 | 342 | 211 | 6 | 16 | 332 | 91 | 424 | 1.3e-19 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066866.t1 | A0A396JGG7 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 4.9e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene066866 | 0.814876 | 1.23E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene066866 | 0.858903 | 5.98E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene066866 | 0.849572 | 2.97E-60 | -1.69E-46 |
| MS.gene049153 | MS.gene066866 | 0.854572 | 1.13E-61 | -1.69E-46 |
| MS.gene049260 | MS.gene066866 | 0.808147 | 3.57E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene066866 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene049443 | MS.gene066866 | 0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene066866 | 0.840626 | 7.76E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene066866 | 0.836693 | 8.06E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene066866 | 0.850053 | 2.18E-60 | -1.69E-46 |
| MS.gene050226 | MS.gene066866 | 0.823387 | 1.42E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene066866 | 0.810761 | 9.81E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene066866 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene066866 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene066866 | -0.801126 | 1.04E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene066866 | 0.84496 | 5.47E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene066866 | 0.847915 | 8.55E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene066866 | 0.838417 | 2.91E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene066866 | 0.833958 | 3.95E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene066866 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene066866 | 0.861745 | 8.27E-64 | -1.69E-46 |
| MS.gene052340 | MS.gene066866 | 0.825644 | 4.19E-54 | -1.69E-46 |
| MS.gene053184 | MS.gene066866 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene066866 | 0.801571 | 8.46E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene066866 | 0.845877 | 3.09E-59 | -1.69E-46 |
| MS.gene054184 | MS.gene066866 | 0.858826 | 6.31E-63 | -1.69E-46 |
| MS.gene054185 | MS.gene066866 | 0.862894 | 3.67E-64 | -1.69E-46 |
| MS.gene054349 | MS.gene066866 | 0.815825 | 7.58E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene066866 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene066866 | 0.831773 | 1.38E-55 | -1.69E-46 |
| MS.gene055133 | MS.gene066866 | 0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene066866 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene066866 | 0.836894 | 7.16E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene066866 | 0.813198 | 2.89E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene066866 | 0.827152 | 1.83E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene066866 | 0.820358 | 7.16E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene066866 | 0.803289 | 3.74E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene066866 | 0.846047 | 2.78E-59 | -1.69E-46 |
| MS.gene057754 | MS.gene066866 | 0.865136 | 7.35E-65 | -1.69E-46 |
| MS.gene058002 | MS.gene066866 | 0.843348 | 1.48E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene066866 | 0.83731 | 5.60E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene066866 | 0.831043 | 2.09E-55 | -1.69E-46 |
| MS.gene058710 | MS.gene066866 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene066866 | 0.822426 | 2.38E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene066866 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene066866 | 0.808217 | 3.45E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene066866 | 0.81922 | 1.30E-52 | -1.69E-46 |
| MS.gene059124 | MS.gene066866 | 0.820525 | 6.55E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene066866 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene066866 | 0.855645 | 5.49E-62 | -1.69E-46 |
| MS.gene059420 | MS.gene066866 | 0.802277 | 6.05E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene066866 | 0.87123 | 8.01E-67 | -1.69E-46 |
| MS.gene05984 | MS.gene066866 | 0.852085 | 5.82E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene066866 | 0.822032 | 2.94E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene066866 | 0.83496 | 2.22E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066866.t1 | MTR_0170s0030 | 89.555 | 517 | 52 | 2 | 4 | 518 | 31 | 547 | 0.0 | 879 |
| MS.gene066866.t1 | MTR_5g053270 | 36.254 | 331 | 189 | 4 | 56 | 367 | 126 | 453 | 2.79e-41 | 159 |
| MS.gene066866.t1 | MTR_1g093850 | 31.214 | 346 | 199 | 6 | 56 | 367 | 133 | 473 | 1.90e-32 | 133 |
| MS.gene066866.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 113 | 458 | 1.53e-14 | 76.6 |
| MS.gene066866.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 72 | 417 | 2.02e-14 | 76.3 |
| MS.gene066866.t1 | MTR_8g014900 | 22.630 | 327 | 233 | 5 | 61 | 367 | 144 | 470 | 3.47e-14 | 75.9 |
| MS.gene066866.t1 | MTR_1g016290 | 40.426 | 94 | 51 | 1 | 194 | 282 | 207 | 300 | 2.49e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066866.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066866.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066866.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066866.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066866.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 117 | 558 | 2.29e-41 | 160 |
| MS.gene066866.t1 | AT3G25690 | 29.973 | 367 | 214 | 8 | 121 | 448 | 53 | 415 | 1.57e-30 | 127 |
| MS.gene066866.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
| MS.gene066866.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTATAAATGAGA+TGG | - | 16767:1718-1737 | MS.gene066866:CDS | 10.0% |
| !!! | ATAATTTTAATAATACAAGA+TGG | + | 16767:2072-2091 | MS.gene066866:intergenic | 10.0% |
| !!! | CTAAATTTTGTTAAAATAAT+AGG | - | 16767:2530-2549 | MS.gene066866:intron | 10.0% |
| !! | AACAAAAAATAACACATAAA+AGG | + | 16767:1309-1328 | MS.gene066866:intergenic | 15.0% |
| !! | ATTCTTATGTTCATTAATAT+GGG | - | 16767:2025-2044 | MS.gene066866:CDS | 15.0% |
| !! | TACCTTAAATTTATTGTTTA+AGG | - | 16767:2589-2608 | MS.gene066866:intron | 15.0% |
| !! | TATTAAAGAAAAAATAGAAG+AGG | - | 16767:1664-1683 | MS.gene066866:CDS | 15.0% |
| !! | TATTCTTATGTTCATTAATA+TGG | - | 16767:2024-2043 | MS.gene066866:CDS | 15.0% |
| !!! | AAGTAATGTTGATTAATTAT+AGG | + | 16767:2491-2510 | MS.gene066866:intergenic | 15.0% |
| !!! | TAAAGACAAATCAATTTTTT+GGG | + | 16767:1364-1383 | MS.gene066866:intergenic | 15.0% |
| !!! | TAATAAAAAGCATAATAGAA+AGG | - | 16767:2832-2851 | MS.gene066866:CDS | 15.0% |
| !!! | TTAAAGACAAATCAATTTTT+TGG | + | 16767:1365-1384 | MS.gene066866:intergenic | 15.0% |
| !! | AATCAACATTACTTAAGTTA+TGG | - | 16767:2497-2516 | MS.gene066866:intron | 20.0% |
| !! | AATCCTACAAAAAAAATCAT+TGG | - | 16767:2440-2459 | MS.gene066866:intron | 20.0% |
| !! | AGCCTTAAACAATAAATTTA+AGG | + | 16767:2594-2613 | MS.gene066866:intergenic | 20.0% |
| !! | ATCCTACAAAAAAAATCATT+GGG | - | 16767:2441-2460 | MS.gene066866:intron | 20.0% |
| !! | TGCTTAATAAATTGAAAAGA+TGG | - | 16767:3047-3066 | MS.gene066866:CDS | 20.0% |
| !! | TTGTTAAAATAATAGGTAGT+AGG | - | 16767:2537-2556 | MS.gene066866:intron | 20.0% |
| !! | TTTCAATTTATTAAGCAAAC+TGG | + | 16767:3044-3063 | MS.gene066866:intergenic | 20.0% |
| !!! | AAACAATAAATTTAAGGTAG+AGG | + | 16767:2588-2607 | MS.gene066866:intergenic | 20.0% |
| ! | AAATTGGTTATTCAGATGAT+AGG | - | 16767:3494-3513 | MS.gene066866:intron | 25.0% |
| ! | AATACAAAATTACAAGCAGA+GGG | - | 16767:1490-1509 | MS.gene066866:CDS | 25.0% |
| ! | AATTGAAGGTTGTGAAAATA+TGG | - | 16767:1433-1452 | MS.gene066866:CDS | 25.0% |
| ! | ACATTCAACACTAATCTATT+GGG | - | 16767:2149-2168 | MS.gene066866:intron | 25.0% |
| ! | AGAAAAGAGTTTATAAAGAG+TGG | + | 16767:2303-2322 | MS.gene066866:intergenic | 25.0% |
| ! | ATATAAGAGTTTATCCATTC+GGG | + | 16767:2203-2222 | MS.gene066866:intergenic | 25.0% |
| ! | ATTCAATAAGTTTCCTTTCA+AGG | + | 16767:1523-1542 | MS.gene066866:intergenic | 25.0% |
| ! | ATTTGCTCATTTCATCATAT+TGG | + | 16767:3399-3418 | MS.gene066866:intergenic | 25.0% |
| ! | GATATAAGAGTTTATCCATT+CGG | + | 16767:2204-2223 | MS.gene066866:intergenic | 25.0% |
| ! | TAATACAAAATTACAAGCAG+AGG | - | 16767:1489-1508 | MS.gene066866:CDS | 25.0% |
| ! | TATTGAATTGAATAGACTGA+AGG | - | 16767:1535-1554 | MS.gene066866:CDS | 25.0% |
| !! | TATGGATTATATCACTGAAA+AGG | - | 16767:1451-1470 | MS.gene066866:CDS | 25.0% |
| !!! | TGCTTGATAATTTTTTCTAC+AGG | - | 16767:2643-2662 | MS.gene066866:intron | 25.0% |
| AAATGAGATGGAAAGTAAGA+AGG | - | 16767:1730-1749 | MS.gene066866:CDS | 30.0% | |
| AATACAACCAGAAACTATGT+TGG | - | 16767:2408-2427 | MS.gene066866:intron | 30.0% | |
| AATCAAATCTATCAAAGCCA+AGG | - | 16767:3167-3186 | MS.gene066866:CDS | 30.0% | |
| ATGCTAAAAGGACTAACAAA+AGG | + | 16767:3558-3577 | MS.gene066866:intergenic | 30.0% | |
| ATGTTCATTAATATGGGACT+TGG | - | 16767:2031-2050 | MS.gene066866:CDS | 30.0% | |
| ATTGAATTGCCACAAATTGA+AGG | - | 16767:1419-1438 | MS.gene066866:CDS | 30.0% | |
| CACATTCAACACTAATCTAT+TGG | - | 16767:2148-2167 | MS.gene066866:intron | 30.0% | |
| GAAAGTAAGAAGGATATGAA+TGG | - | 16767:1740-1759 | MS.gene066866:CDS | 30.0% | |
| GAATTCAACTATTACATGCT+TGG | - | 16767:3348-3367 | MS.gene066866:CDS | 30.0% | |
| GAGCAAATCATATGAAAATG+TGG | - | 16767:3411-3430 | MS.gene066866:intron | 30.0% | |
| GGTTTCTCTAGATTCATAAA+TGG | + | 16767:3214-3233 | MS.gene066866:intergenic | 30.0% | |
| TACCATATTAAAAGCAGACT+AGG | + | 16767:2102-2121 | MS.gene066866:intergenic | 30.0% | |
| TGATCCTGAAATATGCTAAA+AGG | + | 16767:3570-3589 | MS.gene066866:intergenic | 30.0% | |
| TGCTCACAAAACAATCATAT+TGG | + | 16767:2363-2382 | MS.gene066866:intergenic | 30.0% | |
| TTATGCTAGTGATGTAATAC+AGG | - | 16767:1281-1300 | MS.gene066866:CDS | 30.0% | |
| ! | AACAAGTTGAAATATTGCAG+AGG | - | 16767:2732-2751 | MS.gene066866:intron | 30.0% |
| ! | AGATTAGTGTTGAATGTGAA+AGG | + | 16767:2146-2165 | MS.gene066866:intergenic | 30.0% |
| ! | CACTTATTTCTTCTTGTATC+TGG | + | 16767:2682-2701 | MS.gene066866:intergenic | 30.0% |
| ! | GATTAGTGTTGAATGTGAAA+GGG | + | 16767:2145-2164 | MS.gene066866:intergenic | 30.0% |
| ! | TAGTCCTTTTAGCATATTTC+AGG | - | 16767:3563-3582 | MS.gene066866:CDS | 30.0% |
| ! | TTTTCACAACCTTCAATTTG+TGG | + | 16767:1431-1450 | MS.gene066866:intergenic | 30.0% |
| !! | AACCTAGTCTGCTTTTAATA+TGG | - | 16767:2097-2116 | MS.gene066866:CDS | 30.0% |
| !! | AGATAGAGCATTACAAGTTT+TGG | - | 16767:1868-1887 | MS.gene066866:CDS | 30.0% |
| !! | GATTTTGAGGAAATGGAAAA+TGG | - | 16767:1252-1271 | MS.gene066866:CDS | 30.0% |
| !! | TCTGCTTTTAATATGGTACT+TGG | - | 16767:2104-2123 | MS.gene066866:CDS | 30.0% |
| !! | TGAACATGATTTTGAGGAAA+TGG | - | 16767:1245-1264 | MS.gene066866:CDS | 30.0% |
| !!! | CACCCAATGATTTTTTTTGT+AGG | + | 16767:2446-2465 | MS.gene066866:intergenic | 30.0% |
| !!! | TACAAGTTTTGGAAATGAAG+AGG | - | 16767:1879-1898 | MS.gene066866:CDS | 30.0% |
| AACGAGAAGAATTTGCGAAA+GGG | - | 16767:3088-3107 | MS.gene066866:CDS | 35.0% | |
| AAGAAACAATTGCTTCCCTT+CGG | - | 16767:1627-1646 | MS.gene066866:CDS | 35.0% | |
| AAGAGCTTGAATTGGAAAAG+AGG | - | 16767:1909-1928 | MS.gene066866:CDS | 35.0% | |
| ACTACTAGAAGAACTTTCGA+GGG | + | 16767:2999-3018 | MS.gene066866:intergenic | 35.0% | |
| ACTAGCAAGAAACAAATCAG+AGG | - | 16767:1958-1977 | MS.gene066866:CDS | 35.0% | |
| AGAGCTTGAATTGGAAAAGA+GGG | - | 16767:1910-1929 | MS.gene066866:CDS | 35.0% | |
| AGCAATAGCAAGGATCAAAT+TGG | - | 16767:3478-3497 | MS.gene066866:intron | 35.0% | |
| AGCATATGAAAAGCCATCTT+TGG | + | 16767:2790-2809 | MS.gene066866:intergenic | 35.0% | |
| CAATTCTTTGCCTGAAATCT+TGG | + | 16767:2876-2895 | MS.gene066866:intergenic | 35.0% | |
| CTTGGAGTTGAAGAAACAAA+AGG | - | 16767:3366-3385 | MS.gene066866:CDS | 35.0% | |
| GAATAAAGGTAGCAATAGCA+AGG | - | 16767:3468-3487 | MS.gene066866:intron | 35.0% | |
| GACGAATTAGCGAAGTATAA+CGG | - | 16767:1806-1825 | MS.gene066866:CDS | 35.0% | |
| GAGAAACAAAGAGCTTGAAT+TGG | - | 16767:1901-1920 | MS.gene066866:CDS | 35.0% | |
| GATTCCTCTTCAGAGAATAA+AGG | - | 16767:3454-3473 | MS.gene066866:intron | 35.0% | |
| TGTTATGCAAGAAGAAGTTG+AGG | - | 16767:3291-3310 | MS.gene066866:CDS | 35.0% | |
| TTCCCAACTGAAAATGCAAT+TGG | - | 16767:1574-1593 | MS.gene066866:CDS | 35.0% | |
| ! | AGACTCTGAACATGATTTTG+AGG | - | 16767:1239-1258 | MS.gene066866:CDS | 35.0% |
| ! | CTCCAATTGCATTTTCAGTT+GGG | + | 16767:1579-1598 | MS.gene066866:intergenic | 35.0% |
| ! | GATGGCTTTTCATATGCTTA+AGG | - | 16767:2792-2811 | MS.gene066866:intron | 35.0% |
| ! | TCTCCAATTGCATTTTCAGT+TGG | + | 16767:1580-1599 | MS.gene066866:intergenic | 35.0% |
| ! | TGTTTTGTGAGCAAAGTGAA+AGG | - | 16767:2370-2389 | MS.gene066866:intron | 35.0% |
| !!! | AATTTTGGTTTCGAACCGAA+GGG | + | 16767:1645-1664 | MS.gene066866:intergenic | 35.0% |
| !!! | TAATTTTGGTTTCGAACCGA+AGG | + | 16767:1646-1665 | MS.gene066866:intergenic | 35.0% |
| AAGAGCTTGTGTACCAAAGA+TGG | - | 16767:2774-2793 | MS.gene066866:intron | 40.0% | |
| ACTGGCACATCTAATCTAGT+CGG | + | 16767:2279-2298 | MS.gene066866:intergenic | 40.0% | |
| AGAGGGAAATAAGCCTTGAA+AGG | - | 16767:1507-1526 | MS.gene066866:CDS | 40.0% | |
| CAACGAGAAGAATTTGCGAA+AGG | - | 16767:3087-3106 | MS.gene066866:CDS | 40.0% | |
| CCATGAACCAACATAGTTTC+TGG | + | 16767:2418-2437 | MS.gene066866:intergenic | 40.0% | |
| GAATTGGAAAAGAGGGAAGT+AGG | - | 16767:1917-1936 | MS.gene066866:CDS | 40.0% | |
| GACACTCTCTTCAATCTTGT+CGG | + | 16767:3238-3257 | MS.gene066866:intergenic | 40.0% | |
| GACTACTAGAAGAACTTTCG+AGG | + | 16767:3000-3019 | MS.gene066866:intergenic | 40.0% | |
| GAGTTTATAAAGAGTGGCAC+TGG | + | 16767:2297-2316 | MS.gene066866:intergenic | 40.0% | |
| TCAACATCTGATCGTTGACA+TGG | + | 16767:1769-1788 | MS.gene066866:intergenic | 40.0% | |
| TGATAGGATTAAAAGCCTGC+TGG | - | 16767:3510-3529 | MS.gene066866:CDS | 40.0% | |
| TGTCTCTTCGAATGCTACAT+TGG | - | 16767:2946-2965 | MS.gene066866:CDS | 40.0% | |
| ! | ACGTAGGTTTTCAATGTCGA+TGG | - | 16767:3141-3160 | MS.gene066866:CDS | 40.0% |
| ! | GCTACCTTTATTCTCTGAAG+AGG | + | 16767:3461-3480 | MS.gene066866:intergenic | 40.0% |
| !! | CCAGAAACTATGTTGGTTCA+TGG | - | 16767:2415-2434 | MS.gene066866:intron | 40.0% |
| !! | GAGAGTGTCTTTCAGTGATT+CGG | - | 16767:3249-3268 | MS.gene066866:CDS | 40.0% |
| !! | TCACTTCTTTTGCTTGCTGA+AGG | + | 16767:1213-1232 | MS.gene066866:intergenic | 40.0% |
| AAGCCAAGGAAAAGTTGTGC+TGG | - | 16767:3181-3200 | MS.gene066866:CDS | 45.0% | |
| AATCTATTGGGTTTAGCGCG+TGG | - | 16767:2161-2180 | MS.gene066866:intron | 45.0% | |
| ACTAGAAGAACTTTCGAGGG+TGG | + | 16767:2996-3015 | MS.gene066866:intergenic | 45.0% | |
| ACTCTCTTCAATCTTGTCGG+TGG | + | 16767:3235-3254 | MS.gene066866:intergenic | 45.0% | |
| CAAGACTGCACCAAGATTTC+AGG | - | 16767:2863-2882 | MS.gene066866:CDS | 45.0% | |
| GAAAACCTACGTATCAGTCC+AGG | + | 16767:3133-3152 | MS.gene066866:intergenic | 45.0% | |
| GAGAAGAATTTGCGAAAGGG+TGG | - | 16767:3091-3110 | MS.gene066866:CDS | 45.0% | |
| GATTTCTTGGATGACCCGAA+TGG | - | 16767:2186-2205 | MS.gene066866:intron | 45.0% | |
| GCAGAGGAACAGATTTGACA+TGG | - | 16767:2748-2767 | MS.gene066866:intron | 45.0% | |
| ! | TTAGCGCGTGGTTGATTTCT+TGG | - | 16767:2173-2192 | MS.gene066866:intron | 45.0% |
| !! | GTATAACGGTGCTACTGCTA+TGG | - | 16767:1820-1839 | MS.gene066866:CDS | 45.0% |
| !!! | TATTTTTTCTTTAATAATTT+TGG | + | 16767:1660-1679 | MS.gene066866:intergenic | 5.0% |
| CCAAGGAAAAGTTGTGCTGG+TGG | - | 16767:3184-3203 | MS.gene066866:CDS | 50.0% | |
| GGAAATAGACCAAGCAGACC+TGG | - | 16767:3112-3131 | MS.gene066866:CDS | 50.0% | |
| ! | CCACCAGCACAACTTTTCCT+TGG | + | 16767:3187-3206 | MS.gene066866:intergenic | 50.0% |
| ! | CTTGGTGCAGTCTTGTCTTG+TGG | + | 16767:2858-2877 | MS.gene066866:intergenic | 50.0% |
| ATACTAGCAGCTGCACCAGC+AGG | + | 16767:3528-3547 | MS.gene066866:intergenic | 55.0% | |
| CGTATCAGTCCAGGTCTGCT+TGG | + | 16767:3124-3143 | MS.gene066866:intergenic | 55.0% | |
| GCAGACCTGGACTGATACGT+AGG | - | 16767:3125-3144 | MS.gene066866:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16767 | gene | 1207 | 3594 | 1207 | ID=MS.gene066866 |
| 16767 | mRNA | 1207 | 3594 | 1207 | ID=MS.gene066866.t1;Parent=MS.gene066866 |
| 16767 | exon | 3499 | 3594 | 3499 | ID=MS.gene066866.t1.exon1;Parent=MS.gene066866.t1 |
| 16767 | CDS | 3499 | 3594 | 3499 | ID=cds.MS.gene066866.t1;Parent=MS.gene066866.t1 |
| 16767 | exon | 2822 | 3406 | 2822 | ID=MS.gene066866.t1.exon2;Parent=MS.gene066866.t1 |
| 16767 | CDS | 2822 | 3406 | 2822 | ID=cds.MS.gene066866.t1;Parent=MS.gene066866.t1 |
| 16767 | exon | 1207 | 2136 | 1207 | ID=MS.gene066866.t1.exon3;Parent=MS.gene066866.t1 |
| 16767 | CDS | 1207 | 2136 | 1207 | ID=cds.MS.gene066866.t1;Parent=MS.gene066866.t1 |
| Gene Sequence |
| Protein sequence |
