Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066868.t1 | RHN74177.1 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 6.80E-185 | 657.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066868.t1 | Q9LI74 | 28.7 | 342 | 211 | 6 | 16 | 332 | 91 | 424 | 1.3e-19 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066868.t1 | A0A396JGG7 | 83.6 | 537 | 86 | 2 | 1 | 535 | 1 | 537 | 4.9e-185 | 657.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene066868 | 0.812532 | 4.04E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene066868 | 0.858624 | 7.25E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene066868 | 0.848674 | 5.27E-60 | -1.69E-46 |
| MS.gene049153 | MS.gene066868 | 0.854468 | 1.21E-61 | -1.69E-46 |
| MS.gene049260 | MS.gene066868 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene066868 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene049443 | MS.gene066868 | 0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene066868 | 0.840115 | 1.06E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene066868 | 0.837236 | 5.85E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene066868 | 0.849403 | 3.31E-60 | -1.69E-46 |
| MS.gene050226 | MS.gene066868 | 0.82319 | 1.58E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene066868 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene066868 | 0.810875 | 9.27E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene066868 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene066868 | -0.800859 | 1.18E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene066868 | 0.844133 | 9.13E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene066868 | 0.847958 | 8.32E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene066868 | 0.837282 | 5.70E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene066868 | 0.833412 | 5.41E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene066868 | 0.812697 | 3.72E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene066868 | 0.861927 | 7.27E-64 | -1.69E-46 |
| MS.gene052340 | MS.gene066868 | 0.825508 | 4.51E-54 | -1.69E-46 |
| MS.gene053184 | MS.gene066868 | 0.80468 | 1.92E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene066868 | 0.801441 | 8.99E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene066868 | 0.845264 | 4.53E-59 | -1.69E-46 |
| MS.gene054184 | MS.gene066868 | 0.8582 | 9.70E-63 | -1.69E-46 |
| MS.gene054185 | MS.gene066868 | 0.861919 | 7.31E-64 | -1.69E-46 |
| MS.gene054349 | MS.gene066868 | 0.816174 | 6.34E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene066868 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene066868 | 0.830608 | 2.67E-55 | -1.69E-46 |
| MS.gene055133 | MS.gene066868 | 0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene066868 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene066868 | 0.83579 | 1.37E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene066868 | 0.812194 | 4.79E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene066868 | 0.828135 | 1.06E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene066868 | 0.821326 | 4.28E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene066868 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene066868 | 0.846077 | 2.72E-59 | -1.69E-46 |
| MS.gene057754 | MS.gene066868 | 0.865116 | 7.45E-65 | -1.69E-46 |
| MS.gene058002 | MS.gene066868 | 0.843409 | 1.43E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene066868 | 0.836947 | 6.94E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene066868 | 0.830169 | 3.42E-55 | -1.69E-46 |
| MS.gene058710 | MS.gene066868 | 0.815486 | 9.02E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene066868 | 0.821388 | 4.15E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene066868 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene066868 | 0.808582 | 2.89E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene066868 | 0.819226 | 1.30E-52 | -1.69E-46 |
| MS.gene059124 | MS.gene066868 | 0.820126 | 8.09E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene066868 | 0.807841 | 4.15E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene066868 | 0.855124 | 7.78E-62 | -1.69E-46 |
| MS.gene059420 | MS.gene066868 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene066868 | 0.870372 | 1.53E-66 | -1.69E-46 |
| MS.gene05984 | MS.gene066868 | 0.852653 | 4.01E-61 | -1.69E-46 |
| MS.gene060476 | MS.gene066868 | 0.821245 | 4.47E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene066868 | 0.834613 | 2.71E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066868.t1 | MTR_0170s0030 | 89.555 | 517 | 52 | 2 | 4 | 518 | 31 | 547 | 0.0 | 879 |
| MS.gene066868.t1 | MTR_5g053270 | 36.254 | 331 | 189 | 4 | 56 | 367 | 126 | 453 | 2.79e-41 | 159 |
| MS.gene066868.t1 | MTR_1g093850 | 31.214 | 346 | 199 | 6 | 56 | 367 | 133 | 473 | 1.90e-32 | 133 |
| MS.gene066868.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 113 | 458 | 1.53e-14 | 76.6 |
| MS.gene066868.t1 | MTR_2g100630 | 23.098 | 368 | 222 | 13 | 39 | 367 | 72 | 417 | 2.02e-14 | 76.3 |
| MS.gene066868.t1 | MTR_8g014900 | 22.630 | 327 | 233 | 5 | 61 | 367 | 144 | 470 | 3.47e-14 | 75.9 |
| MS.gene066868.t1 | MTR_1g016290 | 40.426 | 94 | 51 | 1 | 194 | 282 | 207 | 300 | 2.49e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066868.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066868.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066868.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066868.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 115 | 556 | 1.92e-41 | 160 |
| MS.gene066868.t1 | AT3G25690 | 30.617 | 454 | 264 | 9 | 34 | 448 | 117 | 558 | 2.29e-41 | 160 |
| MS.gene066868.t1 | AT3G25690 | 29.973 | 367 | 214 | 8 | 121 | 448 | 53 | 415 | 1.57e-30 | 127 |
| MS.gene066868.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
| MS.gene066868.t1 | AT1G52080 | 26.837 | 313 | 214 | 6 | 50 | 355 | 133 | 437 | 2.74e-15 | 79.3 |
Find 0 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTATAAATGAGA+TGG | - | 16769:1503-1522 | MS.gene066868:CDS | 10.0% |
| !!! | ATAATTTTAATAATACAAGA+TGG | + | 16769:1857-1876 | MS.gene066868:intergenic | 10.0% |
| !!! | CTAAATTTTGTTAAAATAAT+AGG | - | 16769:2315-2334 | MS.gene066868:intron | 10.0% |
| !! | AACAAAAAATAACACATAAA+AGG | + | 16769:1094-1113 | MS.gene066868:intergenic | 15.0% |
| !! | ATTCTTATGTTCATTAATAT+GGG | - | 16769:1810-1829 | MS.gene066868:CDS | 15.0% |
| !! | TACCTTAAATTTATTGTTTA+AGG | - | 16769:2374-2393 | MS.gene066868:intron | 15.0% |
| !! | TATTAAAGAAAAAATAGAAG+AGG | - | 16769:1449-1468 | MS.gene066868:CDS | 15.0% |
| !! | TATTCTTATGTTCATTAATA+TGG | - | 16769:1809-1828 | MS.gene066868:CDS | 15.0% |
| !!! | AAGTAATGTTGATTAATTAT+AGG | + | 16769:2276-2295 | MS.gene066868:intergenic | 15.0% |
| !!! | TAAAGACAAATCAATTTTTT+GGG | + | 16769:1149-1168 | MS.gene066868:intergenic | 15.0% |
| !!! | TAATAAAAAGCATAATAGAA+AGG | - | 16769:2617-2636 | MS.gene066868:CDS | 15.0% |
| !!! | TTAAAGACAAATCAATTTTT+TGG | + | 16769:1150-1169 | MS.gene066868:intergenic | 15.0% |
| !! | AATCAACATTACTTAAGTTA+TGG | - | 16769:2282-2301 | MS.gene066868:intron | 20.0% |
| !! | AATCCTACAAAAAAAATCAT+TGG | - | 16769:2225-2244 | MS.gene066868:intron | 20.0% |
| !! | AGCCTTAAACAATAAATTTA+AGG | + | 16769:2379-2398 | MS.gene066868:intergenic | 20.0% |
| !! | ATCCTACAAAAAAAATCATT+GGG | - | 16769:2226-2245 | MS.gene066868:intron | 20.0% |
| !! | TGCTTAATAAATTGAAAAGA+TGG | - | 16769:2832-2851 | MS.gene066868:CDS | 20.0% |
| !! | TTGTTAAAATAATAGGTAGT+AGG | - | 16769:2322-2341 | MS.gene066868:intron | 20.0% |
| !! | TTTCAATTTATTAAGCAAAC+TGG | + | 16769:2829-2848 | MS.gene066868:intergenic | 20.0% |
| !!! | AAACAATAAATTTAAGGTAG+AGG | + | 16769:2373-2392 | MS.gene066868:intergenic | 20.0% |
| ! | AAATTGGTTATTCAGATGAT+AGG | - | 16769:3279-3298 | MS.gene066868:intron | 25.0% |
| ! | AATACAAAATTACAAGCAGA+GGG | - | 16769:1275-1294 | MS.gene066868:CDS | 25.0% |
| ! | AATTGAAGGTTGTGAAAATA+TGG | - | 16769:1218-1237 | MS.gene066868:CDS | 25.0% |
| ! | ACATTCAACACTAATCTATT+GGG | - | 16769:1934-1953 | MS.gene066868:intron | 25.0% |
| ! | AGAAAAGAGTTTATAAAGAG+TGG | + | 16769:2088-2107 | MS.gene066868:intergenic | 25.0% |
| ! | ATATAAGAGTTTATCCATTC+GGG | + | 16769:1988-2007 | MS.gene066868:intergenic | 25.0% |
| ! | ATTCAATAAGTTTCCTTTCA+AGG | + | 16769:1308-1327 | MS.gene066868:intergenic | 25.0% |
| ! | ATTTGCTCATTTCATCATAT+TGG | + | 16769:3184-3203 | MS.gene066868:intergenic | 25.0% |
| ! | GATATAAGAGTTTATCCATT+CGG | + | 16769:1989-2008 | MS.gene066868:intergenic | 25.0% |
| ! | TAATACAAAATTACAAGCAG+AGG | - | 16769:1274-1293 | MS.gene066868:CDS | 25.0% |
| ! | TATTGAATTGAATAGACTGA+AGG | - | 16769:1320-1339 | MS.gene066868:CDS | 25.0% |
| !! | TATGGATTATATCACTGAAA+AGG | - | 16769:1236-1255 | MS.gene066868:CDS | 25.0% |
| !!! | TGCTTGATAATTTTTTCTAC+AGG | - | 16769:2428-2447 | MS.gene066868:intron | 25.0% |
| AAATGAGATGGAAAGTAAGA+AGG | - | 16769:1515-1534 | MS.gene066868:CDS | 30.0% | |
| AATACAACCAGAAACTATGT+TGG | - | 16769:2193-2212 | MS.gene066868:intron | 30.0% | |
| AATCAAATCTATCAAAGCCA+AGG | - | 16769:2952-2971 | MS.gene066868:CDS | 30.0% | |
| ATGCTAAAAGGACTAACAAA+AGG | + | 16769:3343-3362 | MS.gene066868:intergenic | 30.0% | |
| ATGTTCATTAATATGGGACT+TGG | - | 16769:1816-1835 | MS.gene066868:CDS | 30.0% | |
| ATTGAATTGCCACAAATTGA+AGG | - | 16769:1204-1223 | MS.gene066868:CDS | 30.0% | |
| CACATTCAACACTAATCTAT+TGG | - | 16769:1933-1952 | MS.gene066868:intron | 30.0% | |
| GAAAGTAAGAAGGATATGAA+TGG | - | 16769:1525-1544 | MS.gene066868:CDS | 30.0% | |
| GAATTCAACTATTACATGCT+TGG | - | 16769:3133-3152 | MS.gene066868:CDS | 30.0% | |
| GAGCAAATCATATGAAAATG+TGG | - | 16769:3196-3215 | MS.gene066868:intron | 30.0% | |
| GGTTTCTCTAGATTCATAAA+TGG | + | 16769:2999-3018 | MS.gene066868:intergenic | 30.0% | |
| TACCATATTAAAAGCAGACT+AGG | + | 16769:1887-1906 | MS.gene066868:intergenic | 30.0% | |
| TGATCCTGAAATATGCTAAA+AGG | + | 16769:3355-3374 | MS.gene066868:intergenic | 30.0% | |
| TGCTCACAAAACAATCATAT+TGG | + | 16769:2148-2167 | MS.gene066868:intergenic | 30.0% | |
| TTATGCTAGTGATGTAATAC+AGG | - | 16769:1066-1085 | MS.gene066868:CDS | 30.0% | |
| ! | AACAAGTTGAAATATTGCAG+AGG | - | 16769:2517-2536 | MS.gene066868:intron | 30.0% |
| ! | AGATTAGTGTTGAATGTGAA+AGG | + | 16769:1931-1950 | MS.gene066868:intergenic | 30.0% |
| ! | CACTTATTTCTTCTTGTATC+TGG | + | 16769:2467-2486 | MS.gene066868:intergenic | 30.0% |
| ! | GATTAGTGTTGAATGTGAAA+GGG | + | 16769:1930-1949 | MS.gene066868:intergenic | 30.0% |
| ! | TAGTCCTTTTAGCATATTTC+AGG | - | 16769:3348-3367 | MS.gene066868:CDS | 30.0% |
| ! | TTTTCACAACCTTCAATTTG+TGG | + | 16769:1216-1235 | MS.gene066868:intergenic | 30.0% |
| !! | AACCTAGTCTGCTTTTAATA+TGG | - | 16769:1882-1901 | MS.gene066868:CDS | 30.0% |
| !! | AGATAGAGCATTACAAGTTT+TGG | - | 16769:1653-1672 | MS.gene066868:CDS | 30.0% |
| !! | GATTTTGAGGAAATGGAAAA+TGG | - | 16769:1037-1056 | MS.gene066868:CDS | 30.0% |
| !! | TCTGCTTTTAATATGGTACT+TGG | - | 16769:1889-1908 | MS.gene066868:CDS | 30.0% |
| !! | TGAACATGATTTTGAGGAAA+TGG | - | 16769:1030-1049 | MS.gene066868:CDS | 30.0% |
| !!! | CACCCAATGATTTTTTTTGT+AGG | + | 16769:2231-2250 | MS.gene066868:intergenic | 30.0% |
| !!! | TACAAGTTTTGGAAATGAAG+AGG | - | 16769:1664-1683 | MS.gene066868:CDS | 30.0% |
| AACGAGAAGAATTTGCGAAA+GGG | - | 16769:2873-2892 | MS.gene066868:CDS | 35.0% | |
| AAGAAACAATTGCTTCCCTT+CGG | - | 16769:1412-1431 | MS.gene066868:CDS | 35.0% | |
| AAGAGCTTGAATTGGAAAAG+AGG | - | 16769:1694-1713 | MS.gene066868:CDS | 35.0% | |
| ACTACTAGAAGAACTTTCGA+GGG | + | 16769:2784-2803 | MS.gene066868:intergenic | 35.0% | |
| ACTAGCAAGAAACAAATCAG+AGG | - | 16769:1743-1762 | MS.gene066868:CDS | 35.0% | |
| AGAGCTTGAATTGGAAAAGA+GGG | - | 16769:1695-1714 | MS.gene066868:CDS | 35.0% | |
| AGCAATAGCAAGGATCAAAT+TGG | - | 16769:3263-3282 | MS.gene066868:intron | 35.0% | |
| AGCATATGAAAAGCCATCTT+TGG | + | 16769:2575-2594 | MS.gene066868:intergenic | 35.0% | |
| CAATTCTTTGCCTGAAATCT+TGG | + | 16769:2661-2680 | MS.gene066868:intergenic | 35.0% | |
| CTTGGAGTTGAAGAAACAAA+AGG | - | 16769:3151-3170 | MS.gene066868:CDS | 35.0% | |
| GAATAAAGGTAGCAATAGCA+AGG | - | 16769:3253-3272 | MS.gene066868:intron | 35.0% | |
| GACGAATTAGCGAAGTATAA+CGG | - | 16769:1591-1610 | MS.gene066868:CDS | 35.0% | |
| GAGAAACAAAGAGCTTGAAT+TGG | - | 16769:1686-1705 | MS.gene066868:CDS | 35.0% | |
| GATTCCTCTTCAGAGAATAA+AGG | - | 16769:3239-3258 | MS.gene066868:intron | 35.0% | |
| TGTTATGCAAGAAGAAGTTG+AGG | - | 16769:3076-3095 | MS.gene066868:CDS | 35.0% | |
| TTCCCAACTGAAAATGCAAT+TGG | - | 16769:1359-1378 | MS.gene066868:CDS | 35.0% | |
| ! | AGACTCTGAACATGATTTTG+AGG | - | 16769:1024-1043 | MS.gene066868:CDS | 35.0% |
| ! | CTCCAATTGCATTTTCAGTT+GGG | + | 16769:1364-1383 | MS.gene066868:intergenic | 35.0% |
| ! | GATGGCTTTTCATATGCTTA+AGG | - | 16769:2577-2596 | MS.gene066868:intron | 35.0% |
| ! | TCTCCAATTGCATTTTCAGT+TGG | + | 16769:1365-1384 | MS.gene066868:intergenic | 35.0% |
| ! | TGTTTTGTGAGCAAAGTGAA+AGG | - | 16769:2155-2174 | MS.gene066868:intron | 35.0% |
| !!! | AATTTTGGTTTCGAACCGAA+GGG | + | 16769:1430-1449 | MS.gene066868:intergenic | 35.0% |
| !!! | TAATTTTGGTTTCGAACCGA+AGG | + | 16769:1431-1450 | MS.gene066868:intergenic | 35.0% |
| AAGAGCTTGTGTACCAAAGA+TGG | - | 16769:2559-2578 | MS.gene066868:intron | 40.0% | |
| ACTGGCACATCTAATCTAGT+CGG | + | 16769:2064-2083 | MS.gene066868:intergenic | 40.0% | |
| AGAGGGAAATAAGCCTTGAA+AGG | - | 16769:1292-1311 | MS.gene066868:CDS | 40.0% | |
| CAACGAGAAGAATTTGCGAA+AGG | - | 16769:2872-2891 | MS.gene066868:CDS | 40.0% | |
| CCATGAACCAACATAGTTTC+TGG | + | 16769:2203-2222 | MS.gene066868:intergenic | 40.0% | |
| GAATTGGAAAAGAGGGAAGT+AGG | - | 16769:1702-1721 | MS.gene066868:CDS | 40.0% | |
| GACACTCTCTTCAATCTTGT+CGG | + | 16769:3023-3042 | MS.gene066868:intergenic | 40.0% | |
| GACTACTAGAAGAACTTTCG+AGG | + | 16769:2785-2804 | MS.gene066868:intergenic | 40.0% | |
| GAGTTTATAAAGAGTGGCAC+TGG | + | 16769:2082-2101 | MS.gene066868:intergenic | 40.0% | |
| TCAACATCTGATCGTTGACA+TGG | + | 16769:1554-1573 | MS.gene066868:intergenic | 40.0% | |
| TGATAGGATTAAAAGCCTGC+TGG | - | 16769:3295-3314 | MS.gene066868:CDS | 40.0% | |
| TGTCTCTTCGAATGCTACAT+TGG | - | 16769:2731-2750 | MS.gene066868:CDS | 40.0% | |
| ! | ACGTAGGTTTTCAATGTCGA+TGG | - | 16769:2926-2945 | MS.gene066868:CDS | 40.0% |
| ! | GCTACCTTTATTCTCTGAAG+AGG | + | 16769:3246-3265 | MS.gene066868:intergenic | 40.0% |
| !! | CCAGAAACTATGTTGGTTCA+TGG | - | 16769:2200-2219 | MS.gene066868:intron | 40.0% |
| !! | GAGAGTGTCTTTCAGTGATT+CGG | - | 16769:3034-3053 | MS.gene066868:CDS | 40.0% |
| !! | TCACTTCTTTTGCTTGCTGA+AGG | + | 16769:998-1017 | MS.gene066868:intergenic | 40.0% |
| AAGCCAAGGAAAAGTTGTGC+TGG | - | 16769:2966-2985 | MS.gene066868:CDS | 45.0% | |
| AATCTATTGGGTTTAGCGCG+TGG | - | 16769:1946-1965 | MS.gene066868:intron | 45.0% | |
| ACTAGAAGAACTTTCGAGGG+TGG | + | 16769:2781-2800 | MS.gene066868:intergenic | 45.0% | |
| ACTCTCTTCAATCTTGTCGG+TGG | + | 16769:3020-3039 | MS.gene066868:intergenic | 45.0% | |
| CAAGACTGCACCAAGATTTC+AGG | - | 16769:2648-2667 | MS.gene066868:CDS | 45.0% | |
| GAAAACCTACGTATCAGTCC+AGG | + | 16769:2918-2937 | MS.gene066868:intergenic | 45.0% | |
| GAGAAGAATTTGCGAAAGGG+TGG | - | 16769:2876-2895 | MS.gene066868:CDS | 45.0% | |
| GATTTCTTGGATGACCCGAA+TGG | - | 16769:1971-1990 | MS.gene066868:intron | 45.0% | |
| GCAGAGGAACAGATTTGACA+TGG | - | 16769:2533-2552 | MS.gene066868:intron | 45.0% | |
| ! | TTAGCGCGTGGTTGATTTCT+TGG | - | 16769:1958-1977 | MS.gene066868:intron | 45.0% |
| !! | GTATAACGGTGCTACTGCTA+TGG | - | 16769:1605-1624 | MS.gene066868:CDS | 45.0% |
| !!! | TATTTTTTCTTTAATAATTT+TGG | + | 16769:1445-1464 | MS.gene066868:intergenic | 5.0% |
| CCAAGGAAAAGTTGTGCTGG+TGG | - | 16769:2969-2988 | MS.gene066868:CDS | 50.0% | |
| GGAAATAGACCAAGCAGACC+TGG | - | 16769:2897-2916 | MS.gene066868:CDS | 50.0% | |
| ! | CCACCAGCACAACTTTTCCT+TGG | + | 16769:2972-2991 | MS.gene066868:intergenic | 50.0% |
| ! | CTTGGTGCAGTCTTGTCTTG+TGG | + | 16769:2643-2662 | MS.gene066868:intergenic | 50.0% |
| ATACTAGCAGCTGCACCAGC+AGG | + | 16769:3313-3332 | MS.gene066868:intergenic | 55.0% | |
| CGTATCAGTCCAGGTCTGCT+TGG | + | 16769:2909-2928 | MS.gene066868:intergenic | 55.0% | |
| GCAGACCTGGACTGATACGT+AGG | - | 16769:2910-2929 | MS.gene066868:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 16769 | gene | 992 | 3379 | 992 | ID=MS.gene066868 |
| 16769 | mRNA | 992 | 3379 | 992 | ID=MS.gene066868.t1;Parent=MS.gene066868 |
| 16769 | exon | 3284 | 3379 | 3284 | ID=MS.gene066868.t1.exon1;Parent=MS.gene066868.t1 |
| 16769 | CDS | 3284 | 3379 | 3284 | ID=cds.MS.gene066868.t1;Parent=MS.gene066868.t1 |
| 16769 | exon | 2607 | 3191 | 2607 | ID=MS.gene066868.t1.exon2;Parent=MS.gene066868.t1 |
| 16769 | CDS | 2607 | 3191 | 2607 | ID=cds.MS.gene066868.t1;Parent=MS.gene066868.t1 |
| 16769 | exon | 992 | 1921 | 992 | ID=MS.gene066868.t1.exon3;Parent=MS.gene066868.t1 |
| 16769 | CDS | 992 | 1921 | 992 | ID=cds.MS.gene066868.t1;Parent=MS.gene066868.t1 |
| Gene Sequence |
| Protein sequence |
