Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069225.t1 | XP_013444870.1 | 86 | 200 | 28 | 0 | 1 | 200 | 1 | 200 | 9.50E-23 | 117.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069225.t1 | Q9M2D8 | 76.1 | 134 | 31 | 1 | 68 | 200 | 79 | 212 | 3.1e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069225.t1 | A0A072TZF0 | 86.0 | 200 | 28 | 0 | 1 | 200 | 1 | 200 | 6.8e-23 | 117.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene069225 | 0.870232 | 1.71E-66 | -1.69E-46 |
| MS.gene049166 | MS.gene069225 | 0.834515 | 2.87E-56 | -1.69E-46 |
| MS.gene04917 | MS.gene069225 | 0.868448 | 6.48E-66 | -1.69E-46 |
| MS.gene049674 | MS.gene069225 | 0.805794 | 1.12E-49 | -1.69E-46 |
| MS.gene049861 | MS.gene069225 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene069225 | 0.837902 | 3.95E-57 | -1.69E-46 |
| MS.gene050317 | MS.gene069225 | 0.830134 | 3.48E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene069225 | 0.810159 | 1.32E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene069225 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene069225 | 0.833728 | 4.52E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene069225 | 0.82593 | 3.58E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene069225 | 0.807366 | 5.24E-50 | -1.69E-46 |
| MS.gene051756 | MS.gene069225 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene051987 | MS.gene069225 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene069225 | 0.815346 | 9.69E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene069225 | 0.817586 | 3.05E-52 | -1.69E-46 |
| MS.gene052818 | MS.gene069225 | -0.838242 | 3.23E-57 | -1.69E-46 |
| MS.gene053058 | MS.gene069225 | 0.800771 | 1.23E-48 | -1.69E-46 |
| MS.gene053109 | MS.gene069225 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene053167 | MS.gene069225 | 0.857659 | 1.40E-62 | -1.69E-46 |
| MS.gene053381 | MS.gene069225 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene05344 | MS.gene069225 | -0.811483 | 6.85E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene069225 | 0.804808 | 1.81E-49 | -1.69E-46 |
| MS.gene053895 | MS.gene069225 | -0.815096 | 1.10E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene069225 | 0.810366 | 1.19E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene069225 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene069225 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene056752 | MS.gene069225 | 0.858079 | 1.05E-62 | -1.69E-46 |
| MS.gene056849 | MS.gene069225 | 0.809917 | 1.49E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene069225 | 0.815657 | 8.26E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene069225 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene069225 | 0.837351 | 5.47E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene069225 | 0.805494 | 1.30E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene069225 | -0.826352 | 2.84E-54 | -1.69E-46 |
| MS.gene057721 | MS.gene069225 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene069225 | 0.820405 | 6.98E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene069225 | 0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene069225 | 0.820856 | 5.50E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene069225 | 0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene058638 | MS.gene069225 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene069225 | 0.824173 | 9.32E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene069225 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene05904 | MS.gene069225 | -0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene069225 | 0.826268 | 2.98E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene069225 | 0.819215 | 1.31E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene069225 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene069225 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene069225 | 0.828221 | 1.01E-54 | -1.69E-46 |
| MS.gene060465 | MS.gene069225 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene069225 | 0.851519 | 8.42E-61 | -1.69E-46 |
| MS.gene060763 | MS.gene069225 | 0.817638 | 2.97E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene069225 | 0.859566 | 3.79E-63 | -1.69E-46 |
| MS.gene060870 | MS.gene069225 | 0.833346 | 5.62E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069225.t1 | MTR_8g031370 | 97.000 | 200 | 6 | 0 | 1 | 200 | 1 | 200 | 8.99e-133 | 370 |
| MS.gene069225.t1 | MTR_1g100647 | 58.333 | 192 | 67 | 3 | 22 | 200 | 18 | 209 | 8.47e-60 | 186 |
| MS.gene069225.t1 | MTR_7g076730 | 67.769 | 121 | 39 | 0 | 80 | 200 | 13 | 133 | 4.36e-57 | 176 |
| MS.gene069225.t1 | MTR_5g010590 | 59.836 | 122 | 49 | 0 | 79 | 200 | 86 | 207 | 9.23e-44 | 145 |
| MS.gene069225.t1 | MTR_8g097320 | 52.000 | 125 | 60 | 0 | 76 | 200 | 74 | 198 | 1.02e-40 | 137 |
| MS.gene069225.t1 | MTR_8g097320 | 50.781 | 128 | 60 | 1 | 76 | 200 | 74 | 201 | 1.27e-38 | 132 |
| MS.gene069225.t1 | MTR_5g010590 | 60.345 | 58 | 23 | 0 | 79 | 136 | 86 | 143 | 2.12e-15 | 71.6 |
| MS.gene069225.t1 | MTR_1g052560 | 31.148 | 122 | 84 | 0 | 74 | 195 | 148 | 269 | 2.30e-12 | 64.3 |
| MS.gene069225.t1 | MTR_1g019280 | 34.615 | 104 | 67 | 1 | 97 | 200 | 451 | 553 | 2.50e-12 | 65.1 |
| MS.gene069225.t1 | MTR_1g019280 | 32.743 | 113 | 75 | 1 | 88 | 200 | 504 | 615 | 2.83e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069225.t1 | AT3G61260 | 62.424 | 165 | 58 | 3 | 40 | 200 | 48 | 212 | 8.72e-63 | 194 |
| MS.gene069225.t1 | AT3G48940 | 58.784 | 148 | 61 | 0 | 53 | 200 | 28 | 175 | 5.70e-56 | 175 |
| MS.gene069225.t1 | AT5G23750 | 59.732 | 149 | 54 | 2 | 54 | 200 | 57 | 201 | 6.92e-55 | 173 |
| MS.gene069225.t1 | AT5G23750 | 63.492 | 126 | 46 | 0 | 75 | 200 | 77 | 202 | 2.30e-53 | 169 |
| MS.gene069225.t1 | AT2G45820 | 57.219 | 187 | 62 | 4 | 17 | 200 | 19 | 190 | 2.38e-53 | 169 |
| MS.gene069225.t1 | AT5G23750 | 63.492 | 126 | 46 | 0 | 75 | 200 | 104 | 229 | 2.75e-53 | 170 |
| MS.gene069225.t1 | AT1G63295 | 43.802 | 121 | 65 | 2 | 83 | 200 | 31 | 151 | 1.08e-22 | 89.7 |
| MS.gene069225.t1 | AT1G63295 | 43.802 | 121 | 65 | 2 | 83 | 200 | 71 | 191 | 1.50e-22 | 90.5 |
| MS.gene069225.t1 | AT4G00670 | 42.991 | 107 | 60 | 1 | 95 | 200 | 17 | 123 | 3.40e-22 | 87.4 |
| MS.gene069225.t1 | AT1G30320 | 37.037 | 108 | 64 | 1 | 97 | 200 | 401 | 508 | 1.26e-11 | 63.2 |
Find 45 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTGCTCTTGCAGAAAT+TGG | 0.109628 | 8.2:+66981602 | MS.gene069225:intron |
| AAGCATCCAAGGAGTTTCTT+TGG | 0.251656 | 8.2:-66982992 | None:intergenic |
| TTCTTACTTATTCTCTGCTT+TGG | 0.294744 | 8.2:-66981675 | None:intergenic |
| GAACTGCTTCTTGCTTGGTT+TGG | 0.343276 | 8.2:-66979207 | None:intergenic |
| AACACTTTGGCAGGAGCAAT+TGG | 0.362647 | 8.2:+66982811 | MS.gene069225:intron |
| TGCTGCTCCGGCACCGGCAC+CGG | 0.371359 | 8.2:+66979234 | MS.gene069225:CDS |
| GCTCTCTACTGTTGCTGCTT+GGG | 0.383440 | 8.2:+66982006 | MS.gene069225:CDS |
| AGCAGGAACTGCTTCTTGCT+TGG | 0.393000 | 8.2:-66979212 | None:intergenic |
| GGCTCAACCGCAGCAGGAGC+TGG | 0.397851 | 8.2:-66979265 | None:intergenic |
| TCCTGCTGCTGCTCCGGCAC+CGG | 0.432393 | 8.2:+66979228 | MS.gene069225:CDS |
| AGCAGTTCCTGCTGCTGCTC+CGG | 0.434231 | 8.2:+66979222 | MS.gene069225:CDS |
| GTTGGAACCGGTGCCGGTGC+CGG | 0.434603 | 8.2:-66979241 | None:intergenic |
| GCCGGTGCCGGAGCAGCAGC+AGG | 0.440710 | 8.2:-66979229 | None:intergenic |
| ACCTCTAGCTGAGGCTCCTC+CGG | 0.444094 | 8.2:+66979288 | MS.gene069225:CDS |
| ATATTGCTCTTGCAGAAATT+GGG | 0.445917 | 8.2:+66981603 | MS.gene069225:CDS |
| CAGAAATTGGGAAAGAGAAA+AGG | 0.446160 | 8.2:+66981615 | MS.gene069225:CDS |
| AGAGGTGGCTCAACCGCAGC+AGG | 0.447015 | 8.2:-66979271 | None:intergenic |
| AGCTCTCTACTGTTGCTGCT+TGG | 0.453757 | 8.2:+66982005 | MS.gene069225:CDS |
| GCTGCAAAACATAATGCAAC+AGG | 0.462965 | 8.2:+66982962 | MS.gene069225:CDS |
| GCAGGAGCTGGAGTTGGAAC+CGG | 0.472694 | 8.2:-66979253 | None:intergenic |
| GCTGGAGTTGGAACCGGTGC+CGG | 0.491097 | 8.2:-66979247 | None:intergenic |
| ACTGTTCCAAAGAAACTCCT+TGG | 0.505361 | 8.2:+66982986 | MS.gene069225:CDS |
| AACAAGACTAACCTCTATCA+AGG | 0.505662 | 8.2:-66981280 | None:intergenic |
| AAGAATGCATCCCTTGATAG+AGG | 0.508900 | 8.2:+66981269 | MS.gene069225:CDS |
| GGTTATCTAATGTGAAGGCA+TGG | 0.509564 | 8.2:+66981636 | MS.gene069225:CDS |
| TTGGTTTGGAGTTCAGCCAT+AGG | 0.510361 | 8.2:-66979193 | None:intergenic |
| GTGTCATCTGCCACAGGTGG+CGG | 0.529057 | 8.2:-66979340 | None:intergenic |
| CATCATATTAAAAGCATCCA+AGG | 0.533934 | 8.2:-66983003 | None:intergenic |
| AATCAAGAACAAGGTGGCAA+TGG | 0.536099 | 8.2:+66982862 | MS.gene069225:CDS |
| ACCGCAGCAGGAGCTGGAGT+TGG | 0.536338 | 8.2:-66979259 | None:intergenic |
| CACAAAAGCACTTGTTGTTG+TGG | 0.554801 | 8.2:+66979360 | MS.gene069225:CDS |
| GTTATCTAATGTGAAGGCAT+GGG | 0.574842 | 8.2:+66981637 | MS.gene069225:CDS |
| AGCGGCGGCACCGCCACCTG+TGG | 0.575668 | 8.2:+66979330 | MS.gene069225:CDS |
| TCCAACTCCAGCTCCTGCTG+CGG | 0.577619 | 8.2:+66979258 | MS.gene069225:CDS |
| GAAAAGGTTATCTAATGTGA+AGG | 0.581637 | 8.2:+66981631 | MS.gene069225:CDS |
| TGAAGCAATTCTCAAGGCAG+AGG | 0.599324 | 8.2:+66982934 | MS.gene069225:CDS |
| ACGTGCTGAAGCAATTCTCA+AGG | 0.603219 | 8.2:+66982928 | MS.gene069225:CDS |
| ACCGGAGGAGCCTCAGCTAG+AGG | 0.609180 | 8.2:-66979289 | None:intergenic |
| ACAAGACTAACCTCTATCAA+GGG | 0.621639 | 8.2:-66981279 | None:intergenic |
| GGAGGAGCCTCAGCTAGAGG+TGG | 0.640678 | 8.2:-66979286 | None:intergenic |
| TGGTGAGAAAATCAAGAACA+AGG | 0.641835 | 8.2:+66982853 | MS.gene069225:CDS |
| AATGGTTCACAAACAAGCAG+AGG | 0.652178 | 8.2:+66982880 | MS.gene069225:CDS |
| TTTGTGTCATCTGCCACAGG+TGG | 0.658313 | 8.2:-66979343 | None:intergenic |
| GGTTGAGCCACCTCTAGCTG+AGG | 0.662051 | 8.2:+66979279 | MS.gene069225:CDS |
| TGAGAAAATCAAGAACAAGG+TGG | 0.758003 | 8.2:+66982856 | MS.gene069225:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGATCAAATATTAATA+AGG | - | chr8.2:66981340-66981359 | None:intergenic | 10.0% |
| !!! | AATAAAATGTATAATTTTCT+AGG | - | chr8.2:66980744-66980763 | None:intergenic | 10.0% |
| !!! | TATTATTATTGATTAAAAGA+TGG | + | chr8.2:66982119-66982138 | MS.gene069225:intron | 10.0% |
| !! | AACCTAACTAAATATATAAA+AGG | + | chr8.2:66980266-66980285 | MS.gene069225:intron | 15.0% |
| !! | GTTTAATATCCTAAAATTTA+GGG | + | chr8.2:66981950-66981969 | MS.gene069225:intron | 15.0% |
| !! | TAATGAAAATCACTTTAATT+TGG | - | chr8.2:66980965-66980984 | None:intergenic | 15.0% |
| !! | TCCTAAAACTATAATTATTA+TGG | - | chr8.2:66980455-66980474 | None:intergenic | 15.0% |
| !! | TGTTTAATATCCTAAAATTT+AGG | + | chr8.2:66981949-66981968 | MS.gene069225:intron | 15.0% |
| !!! | AAGATAAAGATAAGATTTTA+TGG | + | chr8.2:66982222-66982241 | MS.gene069225:intron | 15.0% |
| !!! | AATTAAATTTTTGAACACTT+TGG | + | chr8.2:66982798-66982817 | MS.gene069225:intron | 15.0% |
| !!! | ATAAAGAAGTATTCAATATA+TGG | - | chr8.2:66982420-66982439 | None:intergenic | 15.0% |
| !!! | ATAATTCTGATATATGTTTT+TGG | + | chr8.2:66979911-66979930 | MS.gene069225:intron | 15.0% |
| !!! | TAATTCTGATATATGTTTTT+GGG | + | chr8.2:66979912-66979931 | MS.gene069225:intron | 15.0% |
| !!! | TCCATAATAATTATAGTTTT+AGG | + | chr8.2:66980451-66980470 | MS.gene069225:intron | 15.0% |
| !!! | TTTTGAATGAAAAAATTGAA+GGG | + | chr8.2:66979498-66979517 | MS.gene069225:intron | 15.0% |
| !!! | TTTTGAGTAAATATCTAAAA+TGG | - | chr8.2:66981838-66981857 | None:intergenic | 15.0% |
| !! | AAAAGCCAAAAAATTAAAGA+AGG | - | chr8.2:66979410-66979429 | None:intergenic | 20.0% |
| !! | AATTAGAATCCAATAAAGAA+AGG | + | chr8.2:66981148-66981167 | MS.gene069225:intron | 20.0% |
| !! | ACCATAACTAATAATTGAAA+AGG | - | chr8.2:66980101-66980120 | None:intergenic | 20.0% |
| !! | ATTAGAAAAGAAACTCTTAA+TGG | + | chr8.2:66982461-66982480 | MS.gene069225:intron | 20.0% |
| !! | TCTAAAGATAATTACATCAA+AGG | - | chr8.2:66981190-66981209 | None:intergenic | 20.0% |
| !! | TGTATCAATATTGTTTCATA+AGG | + | chr8.2:66979469-66979488 | MS.gene069225:intron | 20.0% |
| !! | TTCTTTATTGGATTCTAATT+AGG | - | chr8.2:66981148-66981167 | None:intergenic | 20.0% |
| !! | TTTGAATGAAAAAATTGAAG+GGG | + | chr8.2:66979499-66979518 | MS.gene069225:intron | 20.0% |
| !!! | ATTTTTGTGTTATCTTTACA+GGG | + | chr8.2:66981973-66981992 | MS.gene069225:intron | 20.0% |
| !!! | GAATTCCTTCTTTAATTTTT+TGG | + | chr8.2:66979402-66979421 | MS.gene069225:intron | 20.0% |
| !!! | GACCTTTTATATATTTAGTT+AGG | - | chr8.2:66980271-66980290 | None:intergenic | 20.0% |
| !!! | GTTTTGAATGAAAAAATTGA+AGG | + | chr8.2:66979497-66979516 | MS.gene069225:intron | 20.0% |
| !!! | TAATTTTGTTGAAAAGAAAG+CGG | + | chr8.2:66979312-66979331 | MS.gene069225:CDS | 20.0% |
| !!! | TATCTTTACCATTTTTCTTT+TGG | + | chr8.2:66981219-66981238 | MS.gene069225:intron | 20.0% |
| !!! | TATTTTGAAATCAGTTTAAG+AGG | - | chr8.2:66980989-66981008 | None:intergenic | 20.0% |
| !!! | TATTTTGTTGTCTTAACATT+TGG | - | chr8.2:66980684-66980703 | None:intergenic | 20.0% |
| !!! | TGATTTTATTGTTTGTTTTG+CGG | + | chr8.2:66981699-66981718 | MS.gene069225:intron | 20.0% |
| !!! | TTATATATTTAGTTAGGTTG+AGG | - | chr8.2:66980265-66980284 | None:intergenic | 20.0% |
| !!! | TTCTTTTCAACAAAATTAAC+CGG | - | chr8.2:66979310-66979329 | None:intergenic | 20.0% |
| !!! | TTTATTTGAAAAGCTACTTT+GGG | + | chr8.2:66980758-66980777 | MS.gene069225:intron | 20.0% |
| !!! | TTTGAGTTAATTTCAATTGT+TGG | + | chr8.2:66979637-66979656 | MS.gene069225:intron | 20.0% |
| !!! | TTTTATTTGAAAAGCTACTT+TGG | + | chr8.2:66980757-66980776 | MS.gene069225:intron | 20.0% |
| ! | AAAAAAACATATTTGAGGAG+TGG | - | chr8.2:66981572-66981591 | None:intergenic | 25.0% |
| ! | AATATATCTCTCATGTCATT+AGG | + | chr8.2:66980812-66980831 | MS.gene069225:intron | 25.0% |
| ! | ACCACAAAAAAACATATTTG+AGG | - | chr8.2:66981577-66981596 | None:intergenic | 25.0% |
| ! | ACTGAACAATTCATTCTTAA+TGG | - | chr8.2:66980329-66980348 | None:intergenic | 25.0% |
| ! | ATGATGTGACATGTTAATAT+GGG | + | chr8.2:66980135-66980154 | MS.gene069225:intron | 25.0% |
| ! | ATTTGGAAAATTCATACAAG+AGG | - | chr8.2:66980039-66980058 | None:intergenic | 25.0% |
| ! | CTATAAATTGTGATGTATGT+TGG | + | chr8.2:66982147-66982166 | MS.gene069225:intron | 25.0% |
| ! | CTCAGTTAAGAATGTATATA+TGG | - | chr8.2:66980494-66980513 | None:intergenic | 25.0% |
| ! | GGTGAAAATTAATGAAAGTA+TGG | + | chr8.2:66979520-66979539 | MS.gene069225:intron | 25.0% |
| ! | GTAGAACAAGAAATGATTTA+AGG | - | chr8.2:66980916-66980935 | None:intergenic | 25.0% |
| ! | TACATGATTCCTTTCTTTAT+TGG | - | chr8.2:66981160-66981179 | None:intergenic | 25.0% |
| ! | TATGATGTGACATGTTAATA+TGG | + | chr8.2:66980134-66980153 | MS.gene069225:intron | 25.0% |
| ! | TCAATTATTAGTTATGGTCT+TGG | + | chr8.2:66980103-66980122 | MS.gene069225:intron | 25.0% |
| ! | TCTGTAAACCAAAAGAAAAA+TGG | - | chr8.2:66981230-66981249 | None:intergenic | 25.0% |
| ! | TTTCCCAATTCATACAAAAA+TGG | - | chr8.2:66979976-66979995 | None:intergenic | 25.0% |
| ! | TTTCTTAACCAATGCATTTA+AGG | - | chr8.2:66980431-66980450 | None:intergenic | 25.0% |
| !! | AACCACAATAATCTAAAGTT+CGG | - | chr8.2:66980646-66980665 | None:intergenic | 25.0% |
| !! | CACAAAAATCCCTAAATTTT+AGG | - | chr8.2:66981962-66981981 | None:intergenic | 25.0% |
| !! | GATAAAGCACATCTTTTTAA+AGG | + | chr8.2:66982181-66982200 | MS.gene069225:intron | 25.0% |
| !! | GATTTTTGTGTTATCTTTAC+AGG | + | chr8.2:66981972-66981991 | MS.gene069225:intron | 25.0% |
| !! | GCCTTTTCAATTATTAGTTA+TGG | + | chr8.2:66980097-66980116 | MS.gene069225:intron | 25.0% |
| !! | TTGGAATATTGATAACATGA+GGG | + | chr8.2:66981780-66981799 | MS.gene069225:intron | 25.0% |
| !! | TTTGGAATATTGATAACATG+AGG | + | chr8.2:66981779-66981798 | MS.gene069225:intron | 25.0% |
| !!! | AAACTGTTCTAAGAGATTAA+TGG | - | chr8.2:66982761-66982780 | None:intergenic | 25.0% |
| !!! | AATCACTTTAATTTGGACAA+AGG | - | chr8.2:66980958-66980977 | None:intergenic | 25.0% |
| !!! | AGAACCATTTTTGTATGAAT+TGG | + | chr8.2:66979969-66979988 | MS.gene069225:intron | 25.0% |
| !!! | ATTTGTTCATTGTTTTGTGA+AGG | + | chr8.2:66979610-66979629 | MS.gene069225:intron | 25.0% |
| !!! | ATTTTTCTTTTGGTTTACAG+AGG | + | chr8.2:66981229-66981248 | MS.gene069225:intron | 25.0% |
| !!! | GAACCATTTTTGTATGAATT+GGG | + | chr8.2:66979970-66979989 | MS.gene069225:intron | 25.0% |
| !!! | TAAATGATGCTTTGATTTGT+AGG | + | chr8.2:66981049-66981068 | MS.gene069225:intron | 25.0% |
| !!! | TCCTCAAATATGTTTTTTTG+TGG | + | chr8.2:66981573-66981592 | MS.gene069225:intron | 25.0% |
| !!! | TTTTGGCTTTTAGAAATCAT+GGG | + | chr8.2:66979419-66979438 | MS.gene069225:intron | 25.0% |
| !!! | TTTTTGGCTTTTAGAAATCA+TGG | + | chr8.2:66979418-66979437 | MS.gene069225:intron | 25.0% |
| AAACATTTATCATGTCTCAC+TGG | + | chr8.2:66981084-66981103 | MS.gene069225:intron | 30.0% | |
| AAACGCTAATATTGATAGGT+CGG | + | chr8.2:66982715-66982734 | MS.gene069225:intron | 30.0% | |
| AAAGATGTGCTTTATCTGTT+TGG | - | chr8.2:66982177-66982196 | None:intergenic | 30.0% | |
| AAAGGTCTAACCATGAAATT+TGG | + | chr8.2:66980284-66980303 | MS.gene069225:intron | 30.0% | |
| AAATAATATGCATGCAAGCA+AGG | - | chr8.2:66980713-66980732 | None:intergenic | 30.0% | |
| AACCGAACTTTAGATTATTG+TGG | + | chr8.2:66980641-66980660 | MS.gene069225:intron | 30.0% | |
| AAGTACGCTTAGATTTAGTT+GGG | + | chr8.2:66980519-66980538 | MS.gene069225:intron | 30.0% | |
| ACCATTTGAACCAAATTTCA+TGG | - | chr8.2:66980297-66980316 | None:intergenic | 30.0% | |
| AGCTCAACTAAGAAAAATTG+AGG | + | chr8.2:66982054-66982073 | MS.gene069225:CDS | 30.0% | |
| ATATTGCTCTTGCAGAAATT+GGG | + | chr8.2:66981603-66981622 | MS.gene069225:CDS | 30.0% | |
| CAAGACAATAATTGGATTGA+AGG | - | chr8.2:66982359-66982378 | None:intergenic | 30.0% | |
| CTCAAGTGAAAAATGAGTAT+CGG | + | chr8.2:66980542-66980561 | MS.gene069225:intron | 30.0% | |
| CTGAAAACGCTAATATTGAT+AGG | + | chr8.2:66982711-66982730 | MS.gene069225:intron | 30.0% | |
| CTTTGATTAAGTGCTTATGT+TGG | + | chr8.2:66979716-66979735 | MS.gene069225:intron | 30.0% | |
| GAAAAGGTTATCTAATGTGA+AGG | + | chr8.2:66981631-66981650 | MS.gene069225:CDS | 30.0% | |
| GACAAAAGCAAGACAATAAT+TGG | - | chr8.2:66982367-66982386 | None:intergenic | 30.0% | |
| GAGAAAAAGAAAGCAGAATA+TGG | + | chr8.2:66982833-66982852 | MS.gene069225:CDS | 30.0% | |
| GCTCTCAATTCTTAAGAAAA+TGG | + | chr8.2:66979854-66979873 | MS.gene069225:intron | 30.0% | |
| TAAGTACGCTTAGATTTAGT+TGG | + | chr8.2:66980518-66980537 | MS.gene069225:intron | 30.0% | |
| TCATATTCTTACCAGACATT+TGG | + | chr8.2:66982331-66982350 | MS.gene069225:intron | 30.0% | |
| TGATGTGACATGTTAATATG+GGG | + | chr8.2:66980136-66980155 | MS.gene069225:intron | 30.0% | |
| TTCTTACTTATTCTCTGCTT+TGG | - | chr8.2:66981678-66981697 | None:intergenic | 30.0% | |
| TTTGATCAAATTGAAGAGTG+TGG | + | chr8.2:66979812-66979831 | MS.gene069225:intron | 30.0% | |
| TTTGATTCCTGGAACAATTT+AGG | + | chr8.2:66980359-66980378 | MS.gene069225:intron | 30.0% | |
| ! | AAATTTTTGAACACTTTGGC+AGG | + | chr8.2:66982802-66982821 | MS.gene069225:intron | 30.0% |
| ! | ACCATGAAATTTGGTTCAAA+TGG | + | chr8.2:66980293-66980312 | MS.gene069225:intron | 30.0% |
| ! | AGCTGCAAAACGATATTTTA+GGG | + | chr8.2:66981751-66981770 | MS.gene069225:intron | 30.0% |
| ! | ATTCAATATATGGACTGCAT+AGG | - | chr8.2:66982410-66982429 | None:intergenic | 30.0% |
| ! | TAGCTGCAAAACGATATTTT+AGG | + | chr8.2:66981750-66981769 | MS.gene069225:intron | 30.0% |
| ! | TGATACTTTAAGAGTCTGTT+TGG | - | chr8.2:66981908-66981927 | None:intergenic | 30.0% |
| ! | TGCAGCTAAACTAAGTTTTA+TGG | - | chr8.2:66981738-66981757 | None:intergenic | 30.0% |
| ! | TTTTCAACAAAATTAACCGG+AGG | - | chr8.2:66979307-66979326 | None:intergenic | 30.0% |
| !! | CGATATTTTAGGGATCATTT+TGG | + | chr8.2:66981761-66981780 | MS.gene069225:intron | 30.0% |
| AACAAGACTAACCTCTATCA+AGG | - | chr8.2:66981283-66981302 | None:intergenic | 35.0% | |
| AACTTTCACTCAACAAAGCT+TGG | + | chr8.2:66980886-66980905 | MS.gene069225:intron | 35.0% | |
| AAGAGATTAATGGCGAAACT+CGG | - | chr8.2:66982751-66982770 | None:intergenic | 35.0% | |
| ACAAGACTAACCTCTATCAA+GGG | - | chr8.2:66981282-66981301 | None:intergenic | 35.0% | |
| AGCACATATTCATGTTACCA+AGG | - | chr8.2:66981523-66981542 | None:intergenic | 35.0% | |
| CAGAAATTGGGAAAGAGAAA+AGG | + | chr8.2:66981615-66981634 | MS.gene069225:CDS | 35.0% | |
| CAGGGAGGTAAATAAAGTTT+AGG | - | chr8.2:66980385-66980404 | None:intergenic | 35.0% | |
| GAGCAAAAACTATAGTTAGC+TGG | - | chr8.2:66980243-66980262 | None:intergenic | 35.0% | |
| GATATTGCTCTTGCAGAAAT+TGG | + | chr8.2:66981602-66981621 | MS.gene069225:intron | 35.0% | |
| TATTAATGATGTCAGCGTGT+CGG | - | chr8.2:66982545-66982564 | None:intergenic | 35.0% | |
| TCAACATTGTCAGTTGAGTT+AGG | - | chr8.2:66982685-66982704 | None:intergenic | 35.0% | |
| TCACAATTCTCTATCTTCCT+TGG | + | chr8.2:66981503-66981522 | MS.gene069225:intron | 35.0% | |
| TGACATGTTAATATGGGGTA+GGG | + | chr8.2:66980141-66980160 | MS.gene069225:intron | 35.0% | |
| TGAGAAAATCAAGAACAAGG+TGG | + | chr8.2:66982856-66982875 | MS.gene069225:CDS | 35.0% | |
| TGGTGAGAAAATCAAGAACA+AGG | + | chr8.2:66982853-66982872 | MS.gene069225:CDS | 35.0% | |
| TTTCTTTGCCTTGCAAAAGT+TGG | + | chr8.2:66980173-66980192 | MS.gene069225:intron | 35.0% | |
| ! | AACTTTATTTACCTCCCTGA+TGG | + | chr8.2:66980386-66980405 | MS.gene069225:intron | 35.0% |
| ! | AATTGAAAAGGCATGCCTAA+CGG | - | chr8.2:66980089-66980108 | None:intergenic | 35.0% |
| ! | CAAGATATGGACAAAGCATT+TGG | - | chr8.2:66980056-66980075 | None:intergenic | 35.0% |
| ! | CCAATGCATTTAAGGCATTT+CGG | - | chr8.2:66980423-66980442 | None:intergenic | 35.0% |
| ! | GTTATCTAATGTGAAGGCAT+GGG | + | chr8.2:66981637-66981656 | MS.gene069225:CDS | 35.0% |
| ! | TAGTGTAAGGTACCTTCATT+GGG | - | chr8.2:66980857-66980876 | None:intergenic | 35.0% |
| ! | TCTTAACATTTGGTTCCCAA+GGG | - | chr8.2:66980674-66980693 | None:intergenic | 35.0% |
| ! | TTTTGTTGAAAAGAAAGCGG+CGG | + | chr8.2:66979315-66979334 | MS.gene069225:CDS | 35.0% |
| !! | TATTGTGGTTTGTTTCCCTT+GGG | + | chr8.2:66980656-66980675 | MS.gene069225:intron | 35.0% |
| !! | TTATTGTGGTTTGTTTCCCT+TGG | + | chr8.2:66980655-66980674 | MS.gene069225:intron | 35.0% |
| !!! | AGGGATGCATTCTTTTTTAC+AGG | - | chr8.2:66981263-66981282 | None:intergenic | 35.0% |
| !!! | GCATTCTTTTTTACAGGTTC+TGG | - | chr8.2:66981257-66981276 | None:intergenic | 35.0% |
| AAGAATGCATCCCTTGATAG+AGG | + | chr8.2:66981269-66981288 | MS.gene069225:CDS | 40.0% | |
| AAGCATCCAAGGAGTTTCTT+TGG | - | chr8.2:66982995-66983014 | None:intergenic | 40.0% | |
| AATCAAGAACAAGGTGGCAA+TGG | + | chr8.2:66982862-66982881 | MS.gene069225:CDS | 40.0% | |
| AATGGTTCACAAACAAGCAG+AGG | + | chr8.2:66982880-66982899 | MS.gene069225:CDS | 40.0% | |
| ACCTGTCATTGCAACATAGT+GGG | - | chr8.2:66981016-66981035 | None:intergenic | 40.0% | |
| ACTGTTCCAAAGAAACTCCT+TGG | + | chr8.2:66982986-66983005 | MS.gene069225:CDS | 40.0% | |
| AGGTACCTTACACTAGACTT+GGG | + | chr8.2:66980862-66980881 | MS.gene069225:intron | 40.0% | |
| AGTTTCCCAAGTCTAGTGTA+AGG | - | chr8.2:66980870-66980889 | None:intergenic | 40.0% | |
| ATTGTGACAGCAAGAAACCT+AGG | - | chr8.2:66981490-66981509 | None:intergenic | 40.0% | |
| CACAGTGCTAATATATGCCT+AGG | + | chr8.2:66981470-66981489 | MS.gene069225:intron | 40.0% | |
| CCGAAATGCCTTAAATGCAT+TGG | + | chr8.2:66980420-66980439 | MS.gene069225:intron | 40.0% | |
| GATGTGCTTTATCTGTTTGG+TGG | - | chr8.2:66982174-66982193 | None:intergenic | 40.0% | |
| GATTGAAGGTTCCAAATGTC+TGG | - | chr8.2:66982345-66982364 | None:intergenic | 40.0% | |
| GCTGCAAAACATAATGCAAC+AGG | + | chr8.2:66982962-66982981 | MS.gene069225:CDS | 40.0% | |
| GGTTATCTAATGTGAAGGCA+TGG | + | chr8.2:66981636-66981655 | MS.gene069225:CDS | 40.0% | |
| GTGACATGTTAATATGGGGT+AGG | + | chr8.2:66980140-66980159 | MS.gene069225:intron | 40.0% | |
| GTTGAGTTAGGTATGAAGCA+CGG | - | chr8.2:66982673-66982692 | None:intergenic | 40.0% | |
| GTTTAGGCCTAAATTGTTCC+AGG | - | chr8.2:66980369-66980388 | None:intergenic | 40.0% | |
| TCTTGAATCAGTGATCCGTT+AGG | + | chr8.2:66980071-66980090 | MS.gene069225:intron | 40.0% | |
| TTGAGGAGTGGTTTCATAAG+AGG | - | chr8.2:66981560-66981579 | None:intergenic | 40.0% | |
| TTGTTCCAGGAATCAAACTC+AGG | - | chr8.2:66980356-66980375 | None:intergenic | 40.0% | |
| ! | AAGGTACCTTACACTAGACT+TGG | + | chr8.2:66980861-66980880 | MS.gene069225:intron | 40.0% |
| ! | AGTGTAAGGTACCTTCATTG+GGG | - | chr8.2:66980856-66980875 | None:intergenic | 40.0% |
| ! | CTAGTGTAAGGTACCTTCAT+TGG | - | chr8.2:66980858-66980877 | None:intergenic | 40.0% |
| ! | GAGTCAAACCAACTTTTGCA+AGG | - | chr8.2:66980184-66980203 | None:intergenic | 40.0% |
| ! | GTCTTAACATTTGGTTCCCA+AGG | - | chr8.2:66980675-66980694 | None:intergenic | 40.0% |
| !! | AGCTACTTTGGGATGTCAAA+AGG | + | chr8.2:66980769-66980788 | MS.gene069225:intron | 40.0% |
| !! | CACAAAAGCACTTGTTGTTG+TGG | + | chr8.2:66979360-66979379 | MS.gene069225:CDS | 40.0% |
| !! | CGGATCACTGATTCAAGATA+TGG | - | chr8.2:66980069-66980088 | None:intergenic | 40.0% |
| AACACTTTGGCAGGAGCAAT+TGG | + | chr8.2:66982811-66982830 | MS.gene069225:intron | 45.0% | |
| ACACGACACATGTCTGATAC+CGG | + | chr8.2:66982624-66982643 | MS.gene069225:intron | 45.0% | |
| ACCTAACTCCCTATGAAGCA+CGG | + | chr8.2:66982492-66982511 | MS.gene069225:intron | 45.0% | |
| ACGTGCTGAAGCAATTCTCA+AGG | + | chr8.2:66982928-66982947 | MS.gene069225:CDS | 45.0% | |
| GAACTGCTTCTTGCTTGGTT+TGG | - | chr8.2:66979210-66979229 | None:intergenic | 45.0% | |
| GACCTGTCATTGCAACATAG+TGG | - | chr8.2:66981017-66981036 | None:intergenic | 45.0% | |
| TAATGGCGAAACTCGGATGA+AGG | - | chr8.2:66982744-66982763 | None:intergenic | 45.0% | |
| TCCCACTATGTTGCAATGAC+AGG | + | chr8.2:66981012-66981031 | MS.gene069225:intron | 45.0% | |
| TCGAACCTGAGTTTGATTCC+TGG | + | chr8.2:66980348-66980367 | MS.gene069225:intron | 45.0% | |
| TGAAGCAATTCTCAAGGCAG+AGG | + | chr8.2:66982934-66982953 | MS.gene069225:CDS | 45.0% | |
| ! | CGGTAATCTAGAGTCCATCA+GGG | - | chr8.2:66980403-66980422 | None:intergenic | 45.0% |
| ! | GTGTAAGGTACCTTCATTGG+GGG | - | chr8.2:66980855-66980874 | None:intergenic | 45.0% |
| ! | TAATCTAGAGTCCATCAGGG+AGG | - | chr8.2:66980400-66980419 | None:intergenic | 45.0% |
| ! | TCGGTAATCTAGAGTCCATC+AGG | - | chr8.2:66980404-66980423 | None:intergenic | 45.0% |
| ! | TGTAAGGTACCTTCATTGGG+GGG | - | chr8.2:66980854-66980873 | None:intergenic | 45.0% |
| AGCAGGAACTGCTTCTTGCT+TGG | - | chr8.2:66979215-66979234 | None:intergenic | 50.0% | |
| AGCTCTCTACTGTTGCTGCT+TGG | + | chr8.2:66982005-66982024 | MS.gene069225:CDS | 50.0% | |
| ATTGGGGGGGACTTATTGTG+AGG | - | chr8.2:66980840-66980859 | None:intergenic | 50.0% | |
| CAATAAGTCCCCCCCAATGA+AGG | + | chr8.2:66980842-66980861 | MS.gene069225:intron | 50.0% | |
| CACGACACATGTCTGATACC+GGG | + | chr8.2:66982625-66982644 | MS.gene069225:intron | 50.0% | |
| CTCCCTATGAAGCACGGATA+CGG | + | chr8.2:66982498-66982517 | MS.gene069225:intron | 50.0% | |
| GTCCGTATCCGTGCTTCATA+GGG | - | chr8.2:66982503-66982522 | None:intergenic | 50.0% | |
| TCCGTGCTTCATAGGGAGTT+AGG | - | chr8.2:66982496-66982515 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr8.2:66982504-66982523 | None:intergenic | 50.0% | |
| TTTGTGTCATCTGCCACAGG+TGG | - | chr8.2:66979346-66979365 | None:intergenic | 50.0% | |
| ! | GCTCTCTACTGTTGCTGCTT+GGG | + | chr8.2:66982006-66982025 | MS.gene069225:CDS | 50.0% |
| ! | GCTTTTGTGTCATCTGCCAC+AGG | - | chr8.2:66979349-66979368 | None:intergenic | 50.0% |
| ! | GTAAGGTACCTTCATTGGGG+GGG | - | chr8.2:66980853-66980872 | None:intergenic | 50.0% |
| TATGAAGCACGGACGCTCCT+AGG | - | chr8.2:66982662-66982681 | None:intergenic | 55.0% | |
| TCCTAGGATTAGGCGTGTCC+CGG | - | chr8.2:66982646-66982665 | None:intergenic | 55.0% | |
| ACCGGGACACGCCTAATCCT+AGG | + | chr8.2:66982642-66982661 | MS.gene069225:intron | 60.0% | |
| ACCTCTAGCTGAGGCTCCTC+CGG | + | chr8.2:66979288-66979307 | MS.gene069225:CDS | 60.0% | |
| AGCAGTTCCTGCTGCTGCTC+CGG | + | chr8.2:66979222-66979241 | MS.gene069225:CDS | 60.0% | |
| GCACGGACGCTCCTAGGATT+AGG | - | chr8.2:66982656-66982675 | None:intergenic | 60.0% | |
| GCAGGAGCTGGAGTTGGAAC+CGG | - | chr8.2:66979256-66979275 | None:intergenic | 60.0% | |
| GGTTGAGCCACCTCTAGCTG+AGG | + | chr8.2:66979279-66979298 | MS.gene069225:CDS | 60.0% | |
| GTGTCATCTGCCACAGGTGG+CGG | - | chr8.2:66979343-66979362 | None:intergenic | 60.0% | |
| TCCAACTCCAGCTCCTGCTG+CGG | + | chr8.2:66979258-66979277 | MS.gene069225:CDS | 60.0% | |
| ACCGCAGCAGGAGCTGGAGT+TGG | - | chr8.2:66979262-66979281 | None:intergenic | 65.0% | |
| ACCGGAGGAGCCTCAGCTAG+AGG | - | chr8.2:66979292-66979311 | None:intergenic | 65.0% | |
| AGAGGTGGCTCAACCGCAGC+AGG | - | chr8.2:66979274-66979293 | None:intergenic | 65.0% | |
| GCTGGAGTTGGAACCGGTGC+CGG | - | chr8.2:66979250-66979269 | None:intergenic | 65.0% | |
| GGAGGAGCCTCAGCTAGAGG+TGG | - | chr8.2:66979289-66979308 | None:intergenic | 65.0% | |
| GGCTCAACCGCAGCAGGAGC+TGG | - | chr8.2:66979268-66979287 | None:intergenic | 70.0% | |
| TCCTGCTGCTGCTCCGGCAC+CGG | + | chr8.2:66979228-66979247 | MS.gene069225:CDS | 70.0% | |
| !! | GTTGGAACCGGTGCCGGTGC+CGG | - | chr8.2:66979244-66979263 | None:intergenic | 70.0% |
| !! | TGCTGCTCCGGCACCGGCAC+CGG | + | chr8.2:66979234-66979253 | MS.gene069225:CDS | 75.0% |
| ! | AGCGGCGGCACCGCCACCTG+TGG | + | chr8.2:66979330-66979349 | MS.gene069225:CDS | 80.0% |
| !! | GCCGGTGCCGGAGCAGCAGC+AGG | - | chr8.2:66979232-66979251 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 66979196 | 66983018 | 66979196 | ID=MS.gene069225 |
| chr8.2 | mRNA | 66979196 | 66983018 | 66979196 | ID=MS.gene069225.t1;Parent=MS.gene069225 |
| chr8.2 | exon | 66979196 | 66979391 | 66979196 | ID=MS.gene069225.t1.exon1;Parent=MS.gene069225.t1 |
| chr8.2 | CDS | 66979196 | 66979391 | 66979196 | ID=cds.MS.gene069225.t1;Parent=MS.gene069225.t1 |
| chr8.2 | exon | 66981249 | 66981290 | 66981249 | ID=MS.gene069225.t1.exon2;Parent=MS.gene069225.t1 |
| chr8.2 | CDS | 66981249 | 66981290 | 66981249 | ID=cds.MS.gene069225.t1;Parent=MS.gene069225.t1 |
| chr8.2 | exon | 66981603 | 66981690 | 66981603 | ID=MS.gene069225.t1.exon3;Parent=MS.gene069225.t1 |
| chr8.2 | CDS | 66981603 | 66981690 | 66981603 | ID=cds.MS.gene069225.t1;Parent=MS.gene069225.t1 |
| chr8.2 | exon | 66981994 | 66982075 | 66981994 | ID=MS.gene069225.t1.exon4;Parent=MS.gene069225.t1 |
| chr8.2 | CDS | 66981994 | 66982075 | 66981994 | ID=cds.MS.gene069225.t1;Parent=MS.gene069225.t1 |
| chr8.2 | exon | 66982824 | 66983018 | 66982824 | ID=MS.gene069225.t1.exon5;Parent=MS.gene069225.t1 |
| chr8.2 | CDS | 66982824 | 66983018 | 66982824 | ID=cds.MS.gene069225.t1;Parent=MS.gene069225.t1 |
| Gene Sequence |
| Protein sequence |
