AlfalfaGEDB | MS.gene070582

M. sativa cultivar XinJiangDaYe / MS.gene070582

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070582.t1	XP_003613781.1	70.9	422	19	4	43	360	1	422	1.30E-150	542.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070582.t1	Q9FZ70	29.1	326	147	8	49	300	6	321	2.9e-23	110.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070582.t1	G7KF93	70.9	422	19	4	43	360	1	422	9.1e-151	542.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene070582	0.835385	1.73E-56	-1.69E-46
MS.gene049343	MS.gene070582	0.821629	3.65E-53	-1.69E-46
MS.gene049977	MS.gene070582	0.802145	6.45E-49	-1.69E-46
MS.gene050026	MS.gene070582	0.834569	2.78E-56	-1.69E-46
MS.gene050029	MS.gene070582	0.833169	6.22E-56	-1.69E-46
MS.gene050043	MS.gene070582	0.806607	7.58E-50	-1.69E-46
MS.gene050156	MS.gene070582	0.808012	3.82E-50	-1.69E-46
MS.gene051594	MS.gene070582	0.823625	1.25E-53	-1.69E-46
MS.gene051744	MS.gene070582	0.804668	1.93E-49	-1.69E-46
MS.gene052447	MS.gene070582	0.843231	1.59E-58	-1.69E-46
MS.gene052519	MS.gene070582	0.83542	1.70E-56	-1.69E-46
MS.gene052534	MS.gene070582	0.80623	9.10E-50	-1.69E-46
MS.gene052582	MS.gene070582	0.811648	6.30E-51	-1.69E-46
MS.gene052584	MS.gene070582	0.823533	1.32E-53	-1.69E-46
MS.gene053082	MS.gene070582	0.808307	3.30E-50	-1.69E-46
MS.gene05414	MS.gene070582	0.805104	1.57E-49	-1.69E-46
MS.gene05415	MS.gene070582	0.824589	7.44E-54	-1.69E-46
MS.gene05423	MS.gene070582	0.831236	1.87E-55	-1.69E-46
MS.gene054291	MS.gene070582	-0.829456	5.10E-55	-1.69E-46
MS.gene054651	MS.gene070582	0.815445	9.21E-52	-1.69E-46
MS.gene054991	MS.gene070582	0.83967	1.38E-57	-1.69E-46
MS.gene055227	MS.gene070582	0.804049	2.60E-49	-1.69E-46
MS.gene055228	MS.gene070582	0.823215	1.56E-53	-1.69E-46
MS.gene055694	MS.gene070582	0.802363	5.81E-49	-1.69E-46
MS.gene055818	MS.gene070582	0.835327	1.79E-56	-1.69E-46
MS.gene056050	MS.gene070582	0.823452	1.37E-53	-1.69E-46
MS.gene056174	MS.gene070582	0.804955	1.68E-49	-1.69E-46
MS.gene056272	MS.gene070582	0.822041	2.93E-53	-1.69E-46
MS.gene056366	MS.gene070582	0.816393	5.66E-52	-1.69E-46
MS.gene056373	MS.gene070582	0.812111	5.00E-51	-1.69E-46
MS.gene057026	MS.gene070582	0.811002	8.71E-51	-1.69E-46
MS.gene057444	MS.gene070582	0.811785	5.88E-51	-1.69E-46
MS.gene057598	MS.gene070582	0.827136	1.85E-54	-1.69E-46
MS.gene058294	MS.gene070582	0.816025	6.84E-52	-1.69E-46
MS.gene058625	MS.gene070582	0.838859	2.24E-57	-1.69E-46
MS.gene058829	MS.gene070582	0.804223	2.39E-49	-1.69E-46
MS.gene058979	MS.gene070582	0.816649	4.96E-52	-1.69E-46
MS.gene05925	MS.gene070582	0.824253	8.92E-54	-1.69E-46
MS.gene059458	MS.gene070582	0.818277	2.13E-52	-1.69E-46
MS.gene059459	MS.gene070582	0.822756	2.00E-53	-1.69E-46
MS.gene059460	MS.gene070582	0.824119	9.59E-54	-1.69E-46
MS.gene059584	MS.gene070582	0.820075	8.31E-53	-1.69E-46
MS.gene059625	MS.gene070582	0.828837	7.20E-55	-1.69E-46
MS.gene060348	MS.gene070582	0.827053	1.93E-54	-1.69E-46
MS.gene060352	MS.gene070582	0.833522	5.08E-56	-1.69E-46
MS.gene060353	MS.gene070582	0.804569	2.03E-49	-1.69E-46
MS.gene060521	MS.gene070582	0.806689	7.28E-50	-1.69E-46
MS.gene060634	MS.gene070582	-0.809281	2.04E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070582.t1	MTR_5g040850	70.853	422	19	4	43	360	1	422	0.0	552
MS.gene070582.t1	MTR_2g047848	50.234	428	102	3	43	359	1	428	6.32e-129	376
MS.gene070582.t1	MTR_1g014450	47.775	427	116	5	41	360	8	434	3.53e-116	344
MS.gene070582.t1	MTR_4g057725	45.708	431	123	3	41	360	14	444	1.18e-109	328
MS.gene070582.t1	MTR_1g013560	43.765	425	128	4	41	354	11	435	2.50e-107	322
MS.gene070582.t1	MTR_1g013580	42.857	427	136	4	41	360	11	436	1.50e-101	306
MS.gene070582.t1	MTR_1g013840	43.529	425	130	5	46	360	53	477	6.56e-99	301
MS.gene070582.t1	MTR_2g047872	42.588	425	127	6	47	360	21	439	5.77e-98	298
MS.gene070582.t1	MTR_1g013610	53.185	314	91	4	43	300	1	314	6.19e-96	290
MS.gene070582.t1	MTR_1g021825	43.602	422	120	8	43	354	11	424	1.35e-93	286
MS.gene070582.t1	MTR_1g021825	43.602	422	120	8	43	354	82	495	1.91e-92	285
MS.gene070582.t1	MTR_2g047858	41.395	430	132	6	42	353	102	529	2.71e-92	286
MS.gene070582.t1	MTR_2g091145	41.026	429	143	5	42	360	14	442	8.80e-90	276
MS.gene070582.t1	MTR_1g013560	44.807	337	111	3	41	302	11	347	3.27e-88	270
MS.gene070582.t1	MTR_1g016340	38.889	432	145	8	45	360	11	439	8.58e-87	269
MS.gene070582.t1	MTR_1g016340	38.889	432	145	8	45	360	16	444	9.27e-87	269
MS.gene070582.t1	MTR_1g011400	41.628	430	131	8	43	357	1	425	1.14e-83	260
MS.gene070582.t1	MTR_1g016310	45.963	322	95	4	45	289	16	335	2.86e-82	254
MS.gene070582.t1	MTR_1g016310	45.652	322	96	4	45	289	16	335	3.03e-80	252
MS.gene070582.t1	MTR_1g011430	42.010	388	132	9	43	360	1	365	1.07e-78	246
MS.gene070582.t1	MTR_1g021820	39.007	423	132	7	43	354	22	429	6.06e-77	243
MS.gene070582.t1	MTR_1g011410	41.737	357	122	6	17	298	288	633	4.92e-69	228
MS.gene070582.t1	MTR_1g011410	42.903	310	132	5	43	309	1	308	1.26e-61	209
MS.gene070582.t1	MTR_1g028860	53.917	217	69	3	61	246	2	218	5.02e-69	218
MS.gene070582.t1	MTR_1g013630	57.843	204	55	3	41	213	31	234	8.50e-66	213
MS.gene070582.t1	MTR_1g013280	40.220	363	107	6	92	360	1	347	1.01e-65	212
MS.gene070582.t1	MTR_2g047852	43.162	234	72	4	43	244	1	205	2.38e-50	167
MS.gene070582.t1	MTR_1g013620	42.654	211	72	2	196	357	1	211	1.42e-42	148
MS.gene070582.t1	MTR_0049s0110	30.218	321	145	10	49	298	8	320	5.73e-28	112
MS.gene070582.t1	MTR_0049s0110	30.218	321	145	10	49	298	8	320	6.03e-28	112
MS.gene070582.t1	MTR_0049s0110	33.184	223	111	5	49	241	8	222	1.61e-27	109
MS.gene070582.t1	MTR_0049s0110	30.218	321	145	10	49	298	8	320	1.62e-27	112
MS.gene070582.t1	MTR_1g010190	52.564	78	37	0	244	321	10	87	9.86e-19	80.9
MS.gene070582.t1	MTR_5g038430	33.491	212	106	6	49	229	96	303	5.00e-17	82.4
MS.gene070582.t1	MTR_8g095590	36.269	193	103	8	49	232	15	196	1.19e-16	81.3
MS.gene070582.t1	MTR_7g090750	31.401	207	109	4	49	224	11	215	8.27e-15	75.5
MS.gene070582.t1	MTR_0227s0010	32.632	190	91	5	49	206	15	199	1.45e-12	68.2
MS.gene070582.t1	MTR_2g100590	30.357	224	114	10	46	231	38	257	2.75e-11	64.7
MS.gene070582.t1	MTR_2g100590	30.357	224	114	10	46	231	38	257	2.99e-11	64.7
MS.gene070582.t1	MTR_2g100590	30.357	224	114	10	46	231	38	257	6.54e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070582.t1	AT1G13570	40.000	230	97	6	49	247	6	225	1.73e-39	142
MS.gene070582.t1	AT1G13570	40.000	230	97	6	49	247	6	225	8.77e-39	143
MS.gene070582.t1	AT1G13570	40.000	230	97	6	49	247	6	225	8.77e-39	143
MS.gene070582.t1	AT3G59200	30.714	280	137	11	43	282	1	263	1.02e-17	84.7
MS.gene070582.t1	AT3G59200	30.357	280	138	10	43	282	1	263	1.06e-17	84.0
MS.gene070582.t1	AT3G59000	27.937	315	168	11	49	355	2	265	1.74e-13	71.2
MS.gene070582.t1	AT3G59210	26.444	329	177	13	43	328	1	307	2.36e-12	68.6
MS.gene070582.t1	AT3G59210	26.444	329	177	13	43	328	1	307	2.36e-12	68.6
MS.gene070582.t1	AT3G59210	26.444	329	177	13	43	328	1	307	2.36e-12	68.6
MS.gene070582.t1	AT3G59210	26.444	329	177	13	43	328	1	307	2.36e-12	68.6
MS.gene070582.t1	AT3G59210	26.444	329	177	13	43	328	1	307	2.36e-12	68.6
MS.gene070582.t1	AT5G44950	30.841	214	106	7	49	229	4	208	2.84e-12	68.2
MS.gene070582.t1	AT4G13960	30.093	216	109	8	49	229	2	210	3.54e-12	67.8
MS.gene070582.t1	AT4G13960	30.093	216	109	8	49	229	2	210	3.54e-12	67.8
MS.gene070582.t1	AT3G58880	31.373	204	92	7	49	213	3	197	9.19e-12	66.6
MS.gene070582.t1	AT3G42770	32.143	196	117	7	51	232	1	194	1.09e-11	66.2
MS.gene070582.t1	AT4G14096	24.796	367	166	13	49	315	8	364	1.21e-11	66.2
MS.gene070582.t1	AT4G14096	24.796	367	166	13	49	315	8	364	1.21e-11	66.2
MS.gene070582.t1	AT3G44810	29.469	207	100	8	43	210	1	200	1.72e-11	65.5

Find 63 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTACAGGCTTCAGTAAAT+TGG	0.209920	5.4:+27742510	MS.gene070582:intron
TGATCTTAGTTCTCTTCTTT+TGG	0.228089	5.4:+27742974	MS.gene070582:CDS
CAATGATTTGAGGGAAATTT+CGG	0.275099	5.4:+27743007	MS.gene070582:CDS
AGGGATTGAACACATTATAA+AGG	0.337494	5.4:-27741486	None:intergenic
CTTGTGTTGGACATTTGGTT+AGG	0.347233	5.4:+27742397	MS.gene070582:CDS
CGGTGGATTCTTCATCTAAC+TGG	0.348743	5.4:+27742358	MS.gene070582:CDS
AAGAGCTTGTGTTGGACATT+TGG	0.350862	5.4:+27742392	MS.gene070582:CDS
CAAGGTGTGTGAAGCTCTAC+TGG	0.363118	5.4:-27742948	None:intergenic
TTAGTATTGACAAAAGTTCA+TGG	0.371559	5.4:+27742613	MS.gene070582:CDS
GTGACTTCAAACTTGTTGAT+TGG	0.375767	5.4:-27742286	None:intergenic
AATAAATTTCAATGATTTGA+GGG	0.380711	5.4:+27742998	MS.gene070582:CDS
ATTCTTAATCTCTCAAGATT+AGG	0.389005	5.4:-27743056	None:intergenic
CGAATATATGGTAAATTTGA+GGG	0.392136	5.4:+27742679	MS.gene070582:CDS
GCCTTTGAAAACTTGATAAC+CGG	0.392642	5.4:+27742571	MS.gene070582:CDS
AAAGATATCTTCCATACAAT+TGG	0.395155	5.4:-27743484	None:intergenic
CGAGCAAATGGAGGAAGAAA+TGG	0.406862	5.4:+27742140	MS.gene070582:CDS
TCTTCTTGGTGTGAACTCTA+TGG	0.409558	5.4:+27742324	MS.gene070582:CDS
GACTCGGAATGTGATCTTCT+TGG	0.424019	5.4:+27742310	MS.gene070582:CDS
TGACAGAACTGATCAGGTTC+AGG	0.432254	5.4:+27743662	MS.gene070582:intron
ATCAGGTTCAGGAGAGCGTC+AGG	0.446164	5.4:+27743673	MS.gene070582:CDS
GGGATTGAACACATTATAAA+GGG	0.446328	5.4:-27741485	None:intergenic
TTGTGTTGGACATTTGGTTA+GGG	0.449575	5.4:+27742398	MS.gene070582:CDS
TCGAATATATGGTAAATTTG+AGG	0.452360	5.4:+27742678	MS.gene070582:CDS
ATCAAACACAAGATCTGGTT+GGG	0.478918	5.4:-27742167	None:intergenic
CACTTGAAAGCATGAAGGAC+AGG	0.480330	5.4:-27741547	None:intergenic
TTATATACGAACTTAATTCA+AGG	0.480612	5.4:-27742741	None:intergenic
TGTCTATCAAACACAAGATC+TGG	0.481784	5.4:-27742172	None:intergenic
AACACCCGTCTCCAATTGTA+TGG	0.482216	5.4:+27743473	MS.gene070582:CDS
TACTTGACAATCAAGGAAGC+AGG	0.487398	5.4:+27742100	MS.gene070582:CDS
AAATAAATTTCAATGATTTG+AGG	0.491911	5.4:+27742997	MS.gene070582:CDS
AGTTGATGACAGAACTGATC+AGG	0.492007	5.4:+27743656	MS.gene070582:intron
ATATGATCTTGTAGATGATC+GGG	0.500668	5.4:-27742070	None:intergenic
AATATGATCTTGTAGATGAT+CGG	0.502339	5.4:-27742071	None:intergenic
ATCTGTTAAAGAGCTTGTGT+TGG	0.526764	5.4:+27742384	MS.gene070582:CDS
GATTGTAAAGATTGTAAAGT+CGG	0.535915	5.4:-27741524	None:intergenic
AATTGGAGACGGGTGTTACA+AGG	0.539902	5.4:-27743467	None:intergenic
ATCTTCCATACAATTGGAGA+CGG	0.547006	5.4:-27743478	None:intergenic
TGACGGATGTGGAGTCGGAT+AGG	0.549534	5.4:+27742035	MS.gene070582:CDS
CAAGCTGAAGTTATTTACCA+TGG	0.559107	5.4:+27743697	MS.gene070582:CDS
TCTCTCATACTTGACAATCA+AGG	0.562132	5.4:+27742093	MS.gene070582:CDS
GTCGGATTGAACACTGTCGA+AGG	0.567430	5.4:-27741506	None:intergenic
TATCAAACACAAGATCTGGT+TGG	0.568233	5.4:-27742168	None:intergenic
AAGCTGAAGTTATTTACCAT+GGG	0.569447	5.4:+27743698	MS.gene070582:CDS
GAAGACATTTCAGTTATCGA+GGG	0.577638	5.4:+27742217	MS.gene070582:CDS
TGAAGACATTTCAGTTATCG+AGG	0.580026	5.4:+27742216	MS.gene070582:CDS
ACTCTATGGCTGATGTTGAT+CGG	0.581982	5.4:+27742338	MS.gene070582:CDS
GTGTTGATACAAGACATCTC+TGG	0.590401	5.4:+27743540	MS.gene070582:CDS
TTTCATGTAGGCACGTCTTG+AGG	0.592562	5.4:+27743434	MS.gene070582:intron
CAAGTTTGAAGTCACTGACT+CGG	0.593168	5.4:+27742294	MS.gene070582:CDS
CAACACTTTGCAATTAGCTG+TGG	0.595369	5.4:+27742714	MS.gene070582:CDS
ACTTGAAAGCATGAAGGACA+GGG	0.607155	5.4:-27741546	None:intergenic
TCTTCCATACAATTGGAGAC+GGG	0.613715	5.4:-27743477	None:intergenic
TGTGTTGGACATTTGGTTAG+GGG	0.620893	5.4:+27742399	MS.gene070582:CDS
ATATTTCACACTGAGGGACA+TGG	0.626790	5.4:-27743517	None:intergenic
ACTTGACAATCAAGGAAGCA+GGG	0.632642	5.4:+27742101	MS.gene070582:CDS
TTCGGCACTTGAAAGCATGA+AGG	0.635600	5.4:-27741552	None:intergenic
CAACACATATTTCACACTGA+GGG	0.640162	5.4:-27743523	None:intergenic
TTCACACTGAGGGACATGGT+TGG	0.642204	5.4:-27743513	None:intergenic
TCGGATTGAACACTGTCGAA+GGG	0.649642	5.4:-27741505	None:intergenic
CTATGGCTGATGTTGATCGG+TGG	0.651134	5.4:+27742341	MS.gene070582:CDS
AGAGAACTAAGATCAATACA+AGG	0.685576	5.4:-27742966	None:intergenic
ACTATGATGAGTCTTTCCCA+TGG	0.686250	5.4:-27743714	None:intergenic
TCAACACATATTTCACACTG+AGG	0.720483	5.4:-27743524	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAATATTTACAGAAATT+TGG	-	chr5.4:27741800-27741819	None:intergenic	10.0%
!!	AAATAAATTTCAATGATTTG+AGG	+	chr5.4:27742997-27743016	MS.gene070582:CDS	15.0%
!!	AATAAATTTCAATGATTTGA+GGG	+	chr5.4:27742998-27743017	MS.gene070582:CDS	15.0%
!!	TTGATTAAAATATGAAAATG+AGG	-	chr5.4:27743340-27743359	None:intergenic	15.0%
!!!	ATTTAAAATTAAGTCATTGT+TGG	+	chr5.4:27742470-27742489	MS.gene070582:intron	15.0%
!!!	TAGTATTTTGTTTTAGTATT+TGG	+	chr5.4:27742911-27742930	MS.gene070582:intron	15.0%
!!!	TGCTGTTTTTTTTTTTATTT+AGG	+	chr5.4:27742005-27742024	MS.gene070582:intron	15.0%
!!	AATGAAATCTAATTCAGATT+TGG	-	chr5.4:27743568-27743587	None:intergenic	20.0%
!!	AATTTGTAACAATTTCATGT+AGG	+	chr5.4:27743422-27743441	MS.gene070582:intron	20.0%
!!	CCAAAGTAAAAAAATGAATT+CGG	-	chr5.4:27741573-27741592	None:intergenic	20.0%
!!	TAAAACAAAATACTAGCATT+AGG	-	chr5.4:27742906-27742925	None:intergenic	20.0%
!!	TTATATACGAACTTAATTCA+AGG	-	chr5.4:27742744-27742763	None:intergenic	20.0%
!!	TTGGAAATGTTAAAAATACA+GGG	+	chr5.4:27741764-27741783	MS.gene070582:intron	20.0%
!!	TTTATTTAGGCTAAAAATGA+CGG	+	chr5.4:27742018-27742037	MS.gene070582:intron	20.0%
!	AAAGATATCTTCCATACAAT+TGG	-	chr5.4:27743487-27743506	None:intergenic	25.0%
!	AATATGATCTTGTAGATGAT+CGG	-	chr5.4:27742074-27742093	None:intergenic	25.0%
!	ACAAATTCATAGATTAGATG+AGG	-	chr5.4:27743409-27743428	None:intergenic	25.0%
!	ATGAATAGTTTCAATTCGTA+TGG	+	chr5.4:27743272-27743291	MS.gene070582:intron	25.0%
!	ATTCTTAATCTCTCAAGATT+AGG	-	chr5.4:27743059-27743078	None:intergenic	25.0%
!	CAAATTACTATGATTGCTTT+CGG	-	chr5.4:27742770-27742789	None:intergenic	25.0%
!	CGAATATATGGTAAATTTGA+GGG	+	chr5.4:27742679-27742698	MS.gene070582:CDS	25.0%
!	CTTGGAAATGTTAAAAATAC+AGG	+	chr5.4:27741763-27741782	MS.gene070582:intron	25.0%
!	GATTGTAAAGATTGTAAAGT+CGG	-	chr5.4:27741527-27741546	None:intergenic	25.0%
!	TATGCATATTAAAAGTCTGA+AGG	-	chr5.4:27743373-27743392	None:intergenic	25.0%
!	TCGAATATATGGTAAATTTG+AGG	+	chr5.4:27742678-27742697	MS.gene070582:CDS	25.0%
!	TGGAAATGTTAAAAATACAG+GGG	+	chr5.4:27741765-27741784	MS.gene070582:intron	25.0%
!	TTATTGCAAAATCGAAGAAA+AGG	-	chr5.4:27741634-27741653	None:intergenic	25.0%
!	TTGTGATTACTATACAAGAA+TGG	-	chr5.4:27741950-27741969	None:intergenic	25.0%
!!	ATGTACTTTTACTTCATTCA+GGG	+	chr5.4:27742263-27742282	MS.gene070582:CDS	25.0%
!!	GGTACACAAGTTTAATTTAT+AGG	-	chr5.4:27743319-27743338	None:intergenic	25.0%
!!!	AATACTAATTTTTCAAGCTG+AGG	-	chr5.4:27742601-27742620	None:intergenic	25.0%
!!!	ATACTAATTTTTCAAGCTGA+GGG	-	chr5.4:27742600-27742619	None:intergenic	25.0%
!!!	CCGAATTCATTTTTTTACTT+TGG	+	chr5.4:27741570-27741589	MS.gene070582:CDS	25.0%
!!!	TTAGTATTGACAAAAGTTCA+TGG	+	chr5.4:27742613-27742632	MS.gene070582:CDS	25.0%
!!!	TTGCTTTTCTTTCTGATTTA+TGG	+	chr5.4:27743111-27743130	MS.gene070582:intron	25.0%
	AAGCTGAAGTTATTTACCAT+GGG	+	chr5.4:27743698-27743717	MS.gene070582:CDS	30.0%
	AGAGAACTAAGATCAATACA+AGG	-	chr5.4:27742969-27742988	None:intergenic	30.0%
	AGGACTAAAGCAAAAAATGT+TGG	-	chr5.4:27743200-27743219	None:intergenic	30.0%
	AGGGATTGAACACATTATAA+AGG	-	chr5.4:27741489-27741508	None:intergenic	30.0%
	ATATGATCTTGTAGATGATC+GGG	-	chr5.4:27742073-27742092	None:intergenic	30.0%
	ATTCGAAAAAACGTGAGATT+TGG	-	chr5.4:27742664-27742683	None:intergenic	30.0%
	CAATGATTTGAGGGAAATTT+CGG	+	chr5.4:27743007-27743026	MS.gene070582:CDS	30.0%
	CACTCAAAATCAACATTCAT+AGG	-	chr5.4:27742870-27742889	None:intergenic	30.0%
	CTTCACATAAAAACCAAAGA+AGG	-	chr5.4:27743157-27743176	None:intergenic	30.0%
	GATTGTTGAGCATTATTTGA+AGG	+	chr5.4:27742831-27742850	MS.gene070582:intron	30.0%
	GGGATTGAACACATTATAAA+GGG	-	chr5.4:27741488-27741507	None:intergenic	30.0%
	TATGGACATGATTCATATCT+TGG	+	chr5.4:27741745-27741764	MS.gene070582:intron	30.0%
	TGATAAGAAAATAAGCACCA+AGG	-	chr5.4:27742439-27742458	None:intergenic	30.0%
!	CATGTACTTTTACTTCATTC+AGG	+	chr5.4:27742262-27742281	MS.gene070582:CDS	30.0%
!	GTATGGAAGATATCTTTTCA+GGG	+	chr5.4:27743490-27743509	MS.gene070582:CDS	30.0%
!	TGTATGGAAGATATCTTTTC+AGG	+	chr5.4:27743489-27743508	MS.gene070582:CDS	30.0%
!	TTTATGTCATTTGTCGAGTT+TGG	+	chr5.4:27741846-27741865	MS.gene070582:intron	30.0%
!!	CAGACTTATACATTTTAGTC+CGG	-	chr5.4:27741884-27741903	None:intergenic	30.0%
!!	TGATCTTAGTTCTCTTCTTT+TGG	+	chr5.4:27742974-27742993	MS.gene070582:CDS	30.0%
!!!	CTCACGTTTTTTCGAATATA+TGG	+	chr5.4:27742667-27742686	MS.gene070582:CDS	30.0%
!!!	TCAGTCATCTTTTTTAGAAC+AGG	-	chr5.4:27743612-27743631	None:intergenic	30.0%
	ATCAAACACAAGATCTGGTT+GGG	-	chr5.4:27742170-27742189	None:intergenic	35.0%
	ATCTGTTAAAGAGCTTGTGT+TGG	+	chr5.4:27742384-27742403	MS.gene070582:CDS	35.0%
	ATCTTCCATACAATTGGAGA+CGG	-	chr5.4:27743481-27743500	None:intergenic	35.0%
	CAACACATATTTCACACTGA+GGG	-	chr5.4:27743526-27743545	None:intergenic	35.0%
	CAAGCTGAAGTTATTTACCA+TGG	+	chr5.4:27743697-27743716	MS.gene070582:CDS	35.0%
	GAAGACATTTCAGTTATCGA+GGG	+	chr5.4:27742217-27742236	MS.gene070582:CDS	35.0%
	GTTTACAGGCTTCAGTAAAT+TGG	+	chr5.4:27742510-27742529	MS.gene070582:intron	35.0%
	TATACTTGCACATCCTTCTT+TGG	+	chr5.4:27743141-27743160	MS.gene070582:intron	35.0%
	TATCAAACACAAGATCTGGT+TGG	-	chr5.4:27742171-27742190	None:intergenic	35.0%
	TCAACACATATTTCACACTG+AGG	-	chr5.4:27743527-27743546	None:intergenic	35.0%
	TCTCTCATACTTGACAATCA+AGG	+	chr5.4:27742093-27742112	MS.gene070582:CDS	35.0%
	TGAAGACATTTCAGTTATCG+AGG	+	chr5.4:27742216-27742235	MS.gene070582:CDS	35.0%
	TGTCTATCAAACACAAGATC+TGG	-	chr5.4:27742175-27742194	None:intergenic	35.0%
	TTCATAGATTAGATGAGGAG+AGG	-	chr5.4:27743404-27743423	None:intergenic	35.0%
	TTGTGAGTACTCGTTTACTT+TGG	+	chr5.4:27743081-27743100	MS.gene070582:intron	35.0%
	TTGTGTTGGACATTTGGTTA+GGG	+	chr5.4:27742398-27742417	MS.gene070582:CDS	35.0%
!	CATGTGTTTTATCGAGCAAA+TGG	+	chr5.4:27742128-27742147	MS.gene070582:CDS	35.0%
!	GCCTTTGAAAACTTGATAAC+CGG	+	chr5.4:27742571-27742590	MS.gene070582:CDS	35.0%
!!	GTGACTTCAAACTTGTTGAT+TGG	-	chr5.4:27742289-27742308	None:intergenic	35.0%
!!!	ATTGTCTTTTTTCGAGCTTC+TGG	+	chr5.4:27741707-27741726	MS.gene070582:intron	35.0%
	AAATGTATAAGTCTGTGCGC+CGG	+	chr5.4:27741889-27741908	MS.gene070582:intron	40.0%
	AAGAGCTTGTGTTGGACATT+TGG	+	chr5.4:27742392-27742411	MS.gene070582:CDS	40.0%
	ACTCTATGGCTGATGTTGAT+CGG	+	chr5.4:27742338-27742357	MS.gene070582:CDS	40.0%
	ACTTGACAATCAAGGAAGCA+GGG	+	chr5.4:27742101-27742120	MS.gene070582:CDS	40.0%
	AGATTAGATGAGGAGAGGAA+TGG	-	chr5.4:27743399-27743418	None:intergenic	40.0%
	ATATTTCACACTGAGGGACA+TGG	-	chr5.4:27743520-27743539	None:intergenic	40.0%
	ATCAGTAGACTCTCTATGTG+AGG	-	chr5.4:27742814-27742833	None:intergenic	40.0%
	ATCAGTTCTGTCATCAACTC+GGG	-	chr5.4:27743655-27743674	None:intergenic	40.0%
	ATTTGTCGAGTTTGGTCGTT+AGG	+	chr5.4:27741854-27741873	MS.gene070582:intron	40.0%
	CAACACTTTGCAATTAGCTG+TGG	+	chr5.4:27742714-27742733	MS.gene070582:CDS	40.0%
	CAAGACTAGACACTAGACAA+AGG	-	chr5.4:27743220-27743239	None:intergenic	40.0%
	CTTGTGTTGGACATTTGGTT+AGG	+	chr5.4:27742397-27742416	MS.gene070582:CDS	40.0%
	GATCAGTTCTGTCATCAACT+CGG	-	chr5.4:27743656-27743675	None:intergenic	40.0%
	TACTTGACAATCAAGGAAGC+AGG	+	chr5.4:27742100-27742119	MS.gene070582:CDS	40.0%
	TCTTCCATACAATTGGAGAC+GGG	-	chr5.4:27743480-27743499	None:intergenic	40.0%
	TGAAGCCTGTAAACATCGTT+GGG	-	chr5.4:27742504-27742523	None:intergenic	40.0%
	TGTGTTGGACATTTGGTTAG+GGG	+	chr5.4:27742399-27742418	MS.gene070582:CDS	40.0%
!	ACTTGAAAGCATGAAGGACA+GGG	-	chr5.4:27741549-27741568	None:intergenic	40.0%
!	CAAGTTTGAAGTCACTGACT+CGG	+	chr5.4:27742294-27742313	MS.gene070582:CDS	40.0%
!	GCCGGTTATCAAGTTTTCAA+AGG	-	chr5.4:27742575-27742594	None:intergenic	40.0%
!	GTGTTGATACAAGACATCTC+TGG	+	chr5.4:27743540-27743559	MS.gene070582:CDS	40.0%
!	GTGTTTTATCGAGCAAATGG+AGG	+	chr5.4:27742131-27742150	MS.gene070582:CDS	40.0%
!	TCTTCTTGGTGTGAACTCTA+TGG	+	chr5.4:27742324-27742343	MS.gene070582:CDS	40.0%
!!	AAAAATGACGGATGTGGAGT+CGG	+	chr5.4:27742030-27742049	MS.gene070582:CDS	40.0%
!!	AGTTGATGACAGAACTGATC+AGG	+	chr5.4:27743656-27743675	MS.gene070582:intron	40.0%
!!	TAGGCTAAAAATGACGGATG+TGG	+	chr5.4:27742024-27742043	MS.gene070582:intron	40.0%
!!	TGGATGATGGAACAGGTTTA+TGG	+	chr5.4:27741727-27741746	MS.gene070582:intron	40.0%
!!!	TCGGGTTTGACATTTTTAGC+AGG	-	chr5.4:27743637-27743656	None:intergenic	40.0%
!!!	TTGTTTTAGTATTTGGCCGC+AGG	+	chr5.4:27742918-27742937	MS.gene070582:intron	40.0%
!!!	TTTTTCGAGCTTCTGGATGA+TGG	+	chr5.4:27741714-27741733	MS.gene070582:intron	40.0%
	AAACCCCCAACGATGTTTAC+AGG	+	chr5.4:27742496-27742515	MS.gene070582:intron	45.0%
	AACACCCGTCTCCAATTGTA+TGG	+	chr5.4:27743473-27743492	MS.gene070582:CDS	45.0%
	AAGCCTGTAAACATCGTTGG+GGG	-	chr5.4:27742502-27742521	None:intergenic	45.0%
	CGAGCAAATGGAGGAAGAAA+TGG	+	chr5.4:27742140-27742159	MS.gene070582:CDS	45.0%
	CTCTACTGGAACAATACCTG+CGG	-	chr5.4:27742937-27742956	None:intergenic	45.0%
	CTGAAGCCTGTAAACATCGT+TGG	-	chr5.4:27742505-27742524	None:intergenic	45.0%
	GAAGCCTGTAAACATCGTTG+GGG	-	chr5.4:27742503-27742522	None:intergenic	45.0%
	GACTCGGAATGTGATCTTCT+TGG	+	chr5.4:27742310-27742329	MS.gene070582:CDS	45.0%
	GGGAACACTGTAAGATACCT+TGG	+	chr5.4:27742419-27742438	MS.gene070582:intron	45.0%
	TCGGATTGAACACTGTCGAA+GGG	-	chr5.4:27741508-27741527	None:intergenic	45.0%
	TGACAGAACTGATCAGGTTC+AGG	+	chr5.4:27743662-27743681	MS.gene070582:intron	45.0%
	TTTCATGTAGGCACGTCTTG+AGG	+	chr5.4:27743434-27743453	MS.gene070582:intron	45.0%
!	AATTGGAGACGGGTGTTACA+AGG	-	chr5.4:27743470-27743489	None:intergenic	45.0%
!	CACTTGAAAGCATGAAGGAC+AGG	-	chr5.4:27741550-27741569	None:intergenic	45.0%
!	CGGTGGATTCTTCATCTAAC+TGG	+	chr5.4:27742358-27742377	MS.gene070582:CDS	45.0%
!	GGTGAGCTTTTGAGCAAACA+AGG	-	chr5.4:27743038-27743057	None:intergenic	45.0%
!	TTCGGCACTTGAAAGCATGA+AGG	-	chr5.4:27741555-27741574	None:intergenic	45.0%
	AGTTTGGTCGTTAGGCTTGC+CGG	+	chr5.4:27741862-27741881	MS.gene070582:intron	50.0%
	CAAGGTGTGTGAAGCTCTAC+TGG	-	chr5.4:27742951-27742970	None:intergenic	50.0%
	CCAAGAACCAGAATCGTGAC+CGG	-	chr5.4:27741911-27741930	None:intergenic	50.0%
	CTATGGCTGATGTTGATCGG+TGG	+	chr5.4:27742341-27742360	MS.gene070582:CDS	50.0%
	GTCGGATTGAACACTGTCGA+AGG	-	chr5.4:27741509-27741528	None:intergenic	50.0%
	TTCACACTGAGGGACATGGT+TGG	-	chr5.4:27743516-27743535	None:intergenic	50.0%
!!	CGGTCACGATTCTGGTTCTT+GGG	+	chr5.4:27741909-27741928	MS.gene070582:intron	50.0%
!!	GAGCTTCTGGATGATGGAAC+AGG	+	chr5.4:27741720-27741739	MS.gene070582:intron	50.0%
!!!	TTTTTCAAGCTGAGGGCAGC+CGG	-	chr5.4:27742593-27742612	None:intergenic	50.0%
!	TGACGGATGTGGAGTCGGAT+AGG	+	chr5.4:27742035-27742054	MS.gene070582:CDS	55.0%
!!	ATCAGGTTCAGGAGAGCGTC+AGG	+	chr5.4:27743673-27743692	MS.gene070582:CDS	55.0%
!!	CCGGTCACGATTCTGGTTCT+TGG	+	chr5.4:27741908-27741927	MS.gene070582:intron	55.0%
!	CTGTGCGCCGGTCACGATTC+TGG	+	chr5.4:27741901-27741920	MS.gene070582:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	27741473	27743735	27741473	ID=MS.gene070582
chr5.4	mRNA	27741473	27743735	27741473	ID=MS.gene070582.t1;Parent=MS.gene070582
chr5.4	exon	27741473	27741591	27741473	ID=MS.gene070582.t1.exon1;Parent=MS.gene070582.t1
chr5.4	CDS	27741473	27741591	27741473	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1
chr5.4	exon	27742027	27742427	27742027	ID=MS.gene070582.t1.exon2;Parent=MS.gene070582.t1
chr5.4	CDS	27742027	27742427	27742027	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1
chr5.4	exon	27742518	27742751	27742518	ID=MS.gene070582.t1.exon3;Parent=MS.gene070582.t1
chr5.4	CDS	27742518	27742751	27742518	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1
chr5.4	exon	27742940	27743082	27742940	ID=MS.gene070582.t1.exon4;Parent=MS.gene070582.t1
chr5.4	CDS	27742940	27743082	27742940	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1
chr5.4	exon	27743444	27743561	27743444	ID=MS.gene070582.t1.exon5;Parent=MS.gene070582.t1
chr5.4	CDS	27743444	27743561	27743444	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1
chr5.4	exon	27743668	27743735	27743668	ID=MS.gene070582.t1.exon6;Parent=MS.gene070582.t1
chr5.4	CDS	27743668	27743735	27743668	ID=cds.MS.gene070582.t1;Parent=MS.gene070582.t1

Gene Sequence

>MS.gene070582

ATGAATGATGTTCCCTTTATAATGTGTTCAATCCCTTCGACAGTGTTCAATCCGACTTTACAATCTTTACAATCCCTGTCCTTCATGCTTTCAAGTGCCGAATTCATTTTTTTACTTTGGTTAGTTCTTCGATTTTCACTTCAATCTTTTTATTTCATCCTTTTCTTCGATTTTGCAATAATGTTACTACTGCTCTGATATGTCTAGTGCTTTTAGTTGTACACTTATGTAAAAATTGTCTTTTTTCGAGCTTCTGGATGATGGAACAGGTTTATGGACATGATTCATATCTTGGAAATGTTAAAAATACAGGGGTTATTCTGTCCAAATTTCTGTAAATATTATTTTGATGAAAATAGTTATCTGTAAATTATTTATGTCATTTGTCGAGTTTGGTCGTTAGGCTTGCCGGACTAAAATGTATAAGTCTGTGCGCCGGTCACGATTCTGGTTCTTGGGTCGTGACATGTTAAACCATTCTTGTATAGTAATCACAACATTAATGATTTTGAATTTGTAAGAGTAAGTAATGTGCTGTTTTTTTTTTTATTTAGGCTAAAAATGACGGATGTGGAGTCGGATAGGATTAGTTGCTTACCCGATCATCTACAAGATCATATTCTCTCATACTTGACAATCAAGGAAGCAGGGAGAACATGTGTTTTATCGAGCAAATGGAGGAAGAAATGGTCAACCCAACCAGATCTTGTGTTTGATAGACAATGTGTATCTGCTGTAGCTTCTGAAGACATTTCAGTTATCGAGGGCAAGTTTTTGAGAATCATTGATCATGTACTTTTACTTCATTCAGGGCCAATCAACAAGTTTGAAGTCACTGACTCGGAATGTGATCTTCTTGGTGTGAACTCTATGGCTGATGTTGATCGGTGGATTCTTCATCTAACTGGAAGATCTGTTAAAGAGCTTGTGTTGGACATTTGGTTAGGGGAACACTGTAAGATACCTTGGTGCTTATTTTCTTATCAATGTTTACATCATTTAAAATTAAGTCATTGTTGGCTGAAACCCCCAACGATGTTTACAGGCTTCAGTAAATTGGAAAGTCTTGTTCTACATGATGTTTTAATGACTCAAGATGCCTTTGAAAACTTGATAACCGGCTGCCCTCAGCTTGAAAAATTAGTATTGACAAAAGTTCATGGTTTCACTCAGTTTAATATTCACGCACCAAATCTCACGTTTTTTCGAATATATGGTAAATTTGAGGGCATCAGCTTTGACAACACTTTGCAATTAGCTGTGGTATACCTTGAATTAAGTTCGTATATAAACTCCGAAAGCAATCATAGTAATTTGTTCAAATTTTTTGATCATCTACCTCACATAGAGAGTCTACTGATTGTTGAGCATTATTTGAAGGTATAATTCTCAAGCCTATGAATGTTGATTTTGAGTGTAGTAGTGACTCACCTAATGCTAGTATTTTGTTTTAGTATTTGGCCGCAGGTATTGTTCCAGTAGAGCTTCACACACCTTGTATTGATCTTAGTTCTCTTCTTTTGGAAATAAATTTCAATGATTTGAGGGAAATTTCGGTTGTTCCTTGTTTGCTCAAAAGCTCACCTAATCTTGAGAGATTAAGAATGATTGTGAGTACTCGTTTACTTTGGCTTGACTTTGCTTTTCTTTCTGATTTATGGTTGCACTTATACTTGCACATCCTTCTTTGGTTTTTATGTGAAGTTACTAAGCTTTAGAATTTTCCAACATTTTTTGCTTTAGTCCTTTGTCTAGTGTCTAGTCTTGAAAATTTGTTTCTAAAACTTGTAACAGAAGTTATGAATAGTTTCAATTCGTATGGAATTAGTTACATAATTATAGTCCTATAAATTAAACTTGTGTACCTCATTTTCATATTTTAATCAAAGCACTTTTACCTTCAGACTTTTAATATGCATATGACCATTCCTCTCCTCATCTAATCTATGAATTTGTAACAATTTCATGTAGGCACGTCTTGAGGAGCAGACTGACCTTGTAACACCCGTCTCCAATTGTATGGAAGATATCTTTTCAGGGCCAACCATGTCCCTCAGTGTGAAATATGTGTTGATACAAGACATCTCTGGTACCAAATCTGAATTAGATTTCATTAGATTTCTACTTCAATATTCTCCTGTTCTAAAAAAGATGACTGAAGCCTGCTAAAAATGTCAAACCCGAGTTGATGACAGAACTGATCAGGTTCAGGAGAGCGTCAGGACAAGCTGAAGTTATTTACCATGGGAAAGACTCATCATAG

Protein sequence

>MS.gene070582.t1

MNDVPFIMCSIPSTVFNPTLQSLQSLSFMLSSAEFIFLLWLKMTDVESDRISCLPDHLQDHILSYLTIKEAGRTCVLSSKWRKKWSTQPDLVFDRQCVSAVASEDISVIEGKFLRIIDHVLLLHSGPINKFEVTDSECDLLGVNSMADVDRWILHLTGRSVKELVLDIWLGEHCFSKLESLVLHDVLMTQDAFENLITGCPQLEKLVLTKVHGFTQFNIHAPNLTFFRIYGKFEGISFDNTLQLAVVYLELSIVPVELHTPCIDLSSLLLEINFNDLREISVVPCLLKSSPNLERLRMIARLEEQTDLVTPVSNCMEDIFSGPTMSLSVKYVLIQDISELIRFRRASGQAEVIYHGKDSS