Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070616.t1 | GAU17568.1 | 63.8 | 334 | 106 | 5 | 6 | 335 | 404 | 726 | 1.80E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070616.t1 | Q9FPT1 | 46.2 | 130 | 67 | 3 | 15 | 143 | 56 | 183 | 4.0e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070616.t1 | A0A392MFG0 | 64.8 | 335 | 103 | 5 | 5 | 335 | 3 | 326 | 1.5e-110 | 409.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene070616 | 0.834186 | 3.47E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene070616 | 0.82378 | 1.15E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene070616 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene070616 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene070616 | 0.812169 | 4.85E-51 | -1.69E-46 |
| MS.gene050201 | MS.gene070616 | 0.809545 | 1.79E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene070616 | 0.833055 | 6.64E-56 | -1.69E-46 |
| MS.gene050273 | MS.gene070616 | 0.808036 | 3.77E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene070616 | 0.845922 | 3.00E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene070616 | 0.840037 | 1.11E-57 | -1.69E-46 |
| MS.gene050562 | MS.gene070616 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene050799 | MS.gene070616 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene070616 | 0.800964 | 1.13E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene070616 | 0.848173 | 7.26E-60 | -1.69E-46 |
| MS.gene051719 | MS.gene070616 | 0.821414 | 4.09E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene070616 | 0.824091 | 9.74E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene070616 | 0.82091 | 5.34E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene070616 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene070616 | -0.831313 | 1.79E-55 | -1.69E-46 |
| MS.gene052447 | MS.gene070616 | 0.830379 | 3.04E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene070616 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene070616 | 0.844751 | 6.23E-59 | -1.69E-46 |
| MS.gene052582 | MS.gene070616 | 0.830579 | 2.71E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene070616 | 0.835324 | 1.79E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene070616 | 0.810604 | 1.06E-50 | -1.69E-46 |
| MS.gene053082 | MS.gene070616 | 0.820651 | 6.13E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene070616 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene070616 | 0.828498 | 8.70E-55 | -1.69E-46 |
| MS.gene053883 | MS.gene070616 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene070616 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene070616 | 0.819547 | 1.10E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene070616 | 0.82978 | 4.25E-55 | -1.69E-46 |
| MS.gene055464 | MS.gene070616 | 0.803561 | 3.29E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene070616 | 0.813737 | 2.20E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene070616 | 0.803332 | 3.67E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene070616 | 0.810502 | 1.12E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene070616 | 0.8183 | 2.11E-52 | -1.69E-46 |
| MS.gene056272 | MS.gene070616 | 0.829124 | 6.13E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene070616 | 0.812663 | 3.79E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene070616 | 0.835658 | 1.48E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene070616 | 0.805435 | 1.34E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene070616 | 0.808047 | 3.75E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene070616 | 0.813348 | 2.68E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene070616 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene070616 | 0.841945 | 3.49E-58 | -1.69E-46 |
| MS.gene057598 | MS.gene070616 | 0.800076 | 1.71E-48 | -1.69E-46 |
| MS.gene058008 | MS.gene070616 | 0.821074 | 4.90E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene070616 | 0.834097 | 3.65E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene070616 | 0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene070616 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene070616 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene070616 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene070616 | 0.814398 | 1.57E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene070616 | 0.849159 | 3.87E-60 | -1.69E-46 |
| MS.gene05954 | MS.gene070616 | 0.812961 | 3.26E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene070616 | 0.814896 | 1.22E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene070616 | 0.82057 | 6.40E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene070616 | 0.811434 | 7.01E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene070616 | -0.801315 | 9.54E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene070616 | 0.80168 | 8.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAAGTAAGGATTATT+TGG | 0.155785 | 8.1:+49737793 | MS.gene070616:CDS |
| GTACACTGCTAATATGTTTC+AGG | 0.178138 | 8.1:+49736745 | MS.gene070616:CDS |
| CCAAAGTCTCGACCACATTT+TGG | 0.217526 | 8.1:-49737997 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.219404 | 8.1:-49738247 | None:intergenic |
| TTCACAATAAACCCTCTTTC+AGG | 0.229550 | 8.1:-49737851 | None:intergenic |
| TTTGGAAAAGAACAGTTATT+TGG | 0.252160 | 8.1:+49738294 | MS.gene070616:CDS |
| CTCTCACCTTTCTTGTCTTA+AGG | 0.269117 | 8.1:-49738171 | None:intergenic |
| CGTTGGCCTTCTTCTAGTTC+TGG | 0.287736 | 8.1:-49737974 | None:intergenic |
| TAGATCAGTTTGCAGGAATA+TGG | 0.321883 | 8.1:+49736462 | None:intergenic |
| GAATGGGCGTTCACCGCTTT+GGG | 0.323269 | 8.1:+49738133 | MS.gene070616:CDS |
| GGAATGGGCGTTCACCGCTT+TGG | 0.324343 | 8.1:+49738132 | MS.gene070616:CDS |
| AGTAAGGATTATTTGGGTTT+CGG | 0.339740 | 8.1:+49737800 | MS.gene070616:CDS |
| TTCCTCTAGTAATGGAATAA+AGG | 0.345498 | 8.1:-49738050 | None:intergenic |
| TTTGAAATAGATCAGTTTGC+AGG | 0.352783 | 8.1:+49736455 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 8.1:+49737869 | MS.gene070616:CDS |
| GCCTTGTGTTCAATCTGCTT+TGG | 0.362659 | 8.1:+49738276 | MS.gene070616:CDS |
| GGATGATTTGTCTGTATCAA+TGG | 0.368177 | 8.1:+49736678 | MS.gene070616:intron |
| TACTCTGAGCCTTTCATCCT+TGG | 0.374548 | 8.1:+49736562 | MS.gene070616:CDS |
| TCTCTCACTTGAATAAGATT+AGG | 0.386650 | 8.1:+49736533 | MS.gene070616:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.387611 | 8.1:+49737997 | MS.gene070616:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.389237 | 8.1:+49738117 | MS.gene070616:CDS |
| AATGCAAGTAAGGATTATTT+GGG | 0.389997 | 8.1:+49737794 | MS.gene070616:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.401616 | 8.1:+49738417 | MS.gene070616:CDS |
| GATGATTTGTCTGTATCAAT+GGG | 0.407748 | 8.1:+49736679 | MS.gene070616:CDS |
| CTTTGAGTTCAATGCAAGTA+AGG | 0.409663 | 8.1:+49737784 | MS.gene070616:CDS |
| CCTTCTTCTAGTTCTGGCTC+TGG | 0.429903 | 8.1:-49737968 | None:intergenic |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 8.1:+49738006 | MS.gene070616:CDS |
| CAGTTATTTGGAGAAATTGA+AGG | 0.448720 | 8.1:+49738306 | MS.gene070616:CDS |
| GTTGAAGCAGTTAAGTTAGC+TGG | 0.452845 | 8.1:-49737941 | None:intergenic |
| GTTAGAATTGGAAAGGCTAA+TGG | 0.457549 | 8.1:+49738366 | MS.gene070616:CDS |
| CATTTAATTTCAATTTGACT+TGG | 0.466420 | 8.1:+49738248 | MS.gene070616:CDS |
| GGTAGCTCTAGAGTTAGAAT+TGG | 0.468868 | 8.1:+49738354 | MS.gene070616:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 8.1:+49738460 | MS.gene070616:CDS |
| TCTGAGCCTTTCATCCTTGG+CGG | 0.492833 | 8.1:+49736565 | MS.gene070616:CDS |
| GAGCTTCTTGATCCTGAAAG+AGG | 0.499293 | 8.1:+49737839 | MS.gene070616:CDS |
| TCATCCTTGGCGGCTATCCA+TGG | 0.501161 | 8.1:+49736575 | MS.gene070616:CDS |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 8.1:+49738116 | MS.gene070616:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 8.1:+49738165 | MS.gene070616:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 8.1:+49738007 | MS.gene070616:CDS |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.535745 | 8.1:+49738312 | MS.gene070616:CDS |
| AGCTTCTTGATCCTGAAAGA+GGG | 0.537917 | 8.1:+49737840 | MS.gene070616:CDS |
| GCCAGCAAGACACTTACAAA+AGG | 0.544024 | 8.1:+49736818 | MS.gene070616:CDS |
| GAACATACTTCCTCTAGTAA+TGG | 0.544728 | 8.1:-49738058 | None:intergenic |
| TGAAAGAGGGTTTATTGTGA+AGG | 0.555016 | 8.1:+49737853 | MS.gene070616:CDS |
| TCCAAAGCAGATTGAACACA+AGG | 0.565327 | 8.1:-49738277 | None:intergenic |
| GGATAGCCGCCAAGGATGAA+AGG | 0.566403 | 8.1:-49736571 | None:intergenic |
| TCCTGACACAAAATAAGCGA+AGG | 0.566723 | 8.1:-49738088 | None:intergenic |
| CCAGAGCCAGAACTAGAAGA+AGG | 0.572474 | 8.1:+49737968 | MS.gene070616:CDS |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 8.1:+49736497 | MS.gene070616:CDS |
| ACTTTGGATTTCAAGGGTGT+AGG | 0.575922 | 8.1:+49738013 | MS.gene070616:CDS |
| GGCCTTTATTCCATTACTAG+AGG | 0.578841 | 8.1:+49738048 | MS.gene070616:CDS |
| TACACTGCTAATATGTTTCA+GGG | 0.579049 | 8.1:+49736746 | MS.gene070616:CDS |
| CTGCTAATATGTTTCAGGGA+TGG | 0.579409 | 8.1:+49736750 | MS.gene070616:CDS |
| CTCTAGAGTTAGAATTGGAA+AGG | 0.585395 | 8.1:+49738359 | MS.gene070616:CDS |
| CATACCATGGATAGCCGCCA+AGG | 0.606316 | 8.1:-49736579 | None:intergenic |
| TGCAGCAAGAGACTTGTTGG+AGG | 0.618326 | 8.1:+49738420 | MS.gene070616:CDS |
| AGAAGGCCAACGCCAAAATG+TGG | 0.623253 | 8.1:+49737985 | MS.gene070616:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.644664 | 8.1:+49738309 | MS.gene070616:CDS |
| CCTGACACAAAATAAGCGAA+GGG | 0.648287 | 8.1:-49738087 | None:intergenic |
| GGGTGTAGGACAAATAGAGA+AGG | 0.651657 | 8.1:+49738027 | MS.gene070616:CDS |
| CTAACTTAACTGCTTCAACA+AGG | 0.670044 | 8.1:+49737945 | MS.gene070616:CDS |
| TGATTTGTCTGTATCAATGG+GGG | 0.682465 | 8.1:+49736681 | MS.gene070616:CDS |
| ATGATTTGTCTGTATCAATG+GGG | 0.692803 | 8.1:+49736680 | MS.gene070616:CDS |
| ATAAAGAACTCTGCCCAAAG+CGG | 0.731605 | 8.1:-49738146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGGAAAAATAAGAATT+TGG | + | chr8.1:49737608-49737627 | MS.gene070616:intron | 15.0% |
| !! | TAAGAATCTTCAAAAAATTT+GGG | + | chr8.1:49738213-49738232 | MS.gene070616:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | - | chr8.1:49737027-49737046 | None:intergenic | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | - | chr8.1:49737043-49737062 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | - | chr8.1:49737266-49737285 | None:intergenic | 20.0% |
| !! | ACATTAGAAGTTTAAAAAGT+CGG | - | chr8.1:49737384-49737403 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | - | chr8.1:49738250-49738269 | None:intergenic | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | + | chr8.1:49738212-49738231 | MS.gene070616:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | + | chr8.1:49738248-49738267 | MS.gene070616:CDS | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | + | chr8.1:49736892-49736911 | MS.gene070616:intron | 20.0% |
| ! | AATGCAAGTAAGGATTATTT+GGG | + | chr8.1:49737794-49737813 | MS.gene070616:CDS | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | + | chr8.1:49737702-49737721 | MS.gene070616:intron | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | + | chr8.1:49738165-49738184 | MS.gene070616:CDS | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr8.1:49736595-49736614 | None:intergenic | 25.0% |
| ! | TTCCAACTCTTTCTAATATT+GGG | - | chr8.1:49737102-49737121 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | + | chr8.1:49736869-49736888 | MS.gene070616:intron | 25.0% |
| ! | TTTCCAACTCTTTCTAATAT+TGG | - | chr8.1:49737103-49737122 | None:intergenic | 25.0% |
| ! | TTTGGAAAAGAACAGTTATT+TGG | + | chr8.1:49738294-49738313 | MS.gene070616:CDS | 25.0% |
| !!! | CTTTTTATTTTTCAGTCTCA+AGG | + | chr8.1:49737532-49737551 | MS.gene070616:intron | 25.0% |
| CAATAGTTTCGTATCATATG+AGG | - | chr8.1:49736629-49736648 | None:intergenic | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | + | chr8.1:49737793-49737812 | MS.gene070616:CDS | 30.0% | |
| CAGTTATTTGGAGAAATTGA+AGG | + | chr8.1:49738306-49738325 | MS.gene070616:CDS | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | + | chr8.1:49738216-49738235 | MS.gene070616:CDS | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | - | chr8.1:49737491-49737510 | None:intergenic | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | - | chr8.1:49737655-49737674 | None:intergenic | 30.0% | |
| TACACTGCTAATATGTTTCA+GGG | + | chr8.1:49736746-49736765 | MS.gene070616:CDS | 30.0% | |
| TCTCTCACTTGAATAAGATT+AGG | + | chr8.1:49736533-49736552 | MS.gene070616:CDS | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | + | chr8.1:49738309-49738328 | MS.gene070616:CDS | 30.0% | |
| TTCCCAATATTAGAAAGAGT+TGG | + | chr8.1:49737097-49737116 | MS.gene070616:intron | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | - | chr8.1:49737776-49737795 | None:intergenic | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | - | chr8.1:49737371-49737390 | None:intergenic | 30.0% |
| ! | AGTAAGGATTATTTGGGTTT+CGG | + | chr8.1:49737800-49737819 | MS.gene070616:CDS | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | - | chr8.1:49737766-49737785 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | + | chr8.1:49736680-49736699 | MS.gene070616:CDS | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | + | chr8.1:49736679-49736698 | MS.gene070616:CDS | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | - | chr8.1:49738053-49738072 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | + | chr8.1:49738447-49738466 | MS.gene070616:CDS | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | - | chr8.1:49737741-49737760 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTGACTTTGCTTT+AGG | + | chr8.1:49736657-49736676 | MS.gene070616:intron | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | + | chr8.1:49738110-49738129 | MS.gene070616:CDS | 35.0% | |
| AGGTCAAAAATCAAGACTCA+GGG | - | chr8.1:49736991-49737010 | None:intergenic | 35.0% | |
| CTAACTTAACTGCTTCAACA+AGG | + | chr8.1:49737945-49737964 | MS.gene070616:CDS | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | + | chr8.1:49738111-49738130 | MS.gene070616:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | - | chr8.1:49738061-49738080 | None:intergenic | 35.0% | |
| GGAAAAACTAAGGGATAATG+TGG | + | chr8.1:49738333-49738352 | MS.gene070616:CDS | 35.0% | |
| GTACACTGCTAATATGTTTC+AGG | + | chr8.1:49736745-49736764 | MS.gene070616:CDS | 35.0% | |
| GTTAGAATTGGAAAGGCTAA+TGG | + | chr8.1:49738366-49738385 | MS.gene070616:CDS | 35.0% | |
| TAGGTCAAAAATCAAGACTC+AGG | - | chr8.1:49736992-49737011 | None:intergenic | 35.0% | |
| TGAAAGAGGGTTTATTGTGA+AGG | + | chr8.1:49737853-49737872 | MS.gene070616:CDS | 35.0% | |
| TGCGCTCAACAAAATCATAA+AGG | + | chr8.1:49737592-49737611 | MS.gene070616:intron | 35.0% | |
| TGTATTGTGCGTGAAATTTG+TGG | + | chr8.1:49737280-49737299 | MS.gene070616:intron | 35.0% | |
| TTCACAATAAACCCTCTTTC+AGG | - | chr8.1:49737854-49737873 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGAGCGCAAAACA+TGG | - | chr8.1:49737587-49737606 | None:intergenic | 35.0% |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | + | chr8.1:49737784-49737803 | MS.gene070616:CDS | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | + | chr8.1:49736678-49736697 | MS.gene070616:intron | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | + | chr8.1:49736681-49736700 | MS.gene070616:CDS | 35.0% |
| !! | CTCTAGAGTTAGAATTGGAA+AGG | + | chr8.1:49738359-49738378 | MS.gene070616:CDS | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | + | chr8.1:49737170-49737189 | MS.gene070616:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | + | chr8.1:49737169-49737188 | MS.gene070616:intron | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | - | chr8.1:49737650-49737669 | None:intergenic | 40.0% | |
| AAACGGTGAAGTACATGTAC+CGG | + | chr8.1:49737198-49737217 | MS.gene070616:intron | 40.0% | |
| AGCTTCTTGATCCTGAAAGA+GGG | + | chr8.1:49737840-49737859 | MS.gene070616:CDS | 40.0% | |
| ATAAAGAACTCTGCCCAAAG+CGG | - | chr8.1:49738149-49738168 | None:intergenic | 40.0% | |
| ATGAGTCACAGTAAGATTGC+AGG | + | chr8.1:49736927-49736946 | MS.gene070616:intron | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | + | chr8.1:49738460-49738479 | MS.gene070616:CDS | 40.0% | |
| CCTGACACAAAATAAGCGAA+GGG | - | chr8.1:49738090-49738109 | None:intergenic | 40.0% | |
| CTCTCACCTTTCTTGTCTTA+AGG | - | chr8.1:49738174-49738193 | None:intergenic | 40.0% | |
| CTGCTAATATGTTTCAGGGA+TGG | + | chr8.1:49736750-49736769 | MS.gene070616:CDS | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | + | chr8.1:49738048-49738067 | MS.gene070616:CDS | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | + | chr8.1:49738007-49738026 | MS.gene070616:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr8.1:49737869-49737888 | MS.gene070616:CDS | 40.0% | |
| GTTGAAGCAGTTAAGTTAGC+TGG | - | chr8.1:49737944-49737963 | None:intergenic | 40.0% | |
| TCCAAAGCAGATTGAACACA+AGG | - | chr8.1:49738280-49738299 | None:intergenic | 40.0% | |
| TCCTGACACAAAATAAGCGA+AGG | - | chr8.1:49738091-49738110 | None:intergenic | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | + | chr8.1:49738312-49738331 | MS.gene070616:CDS | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | - | chr8.1:49736822-49736841 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | + | chr8.1:49738013-49738032 | MS.gene070616:CDS | 40.0% |
| ! | CTGAAGCATGGGTTGTAAAA+CGG | + | chr8.1:49737181-49737200 | MS.gene070616:intron | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | - | chr8.1:49737011-49737030 | None:intergenic | 40.0% |
| ! | TTTTACAACCCATGCTTCAG+AGG | - | chr8.1:49737181-49737200 | None:intergenic | 40.0% |
| !! | GGCAGAAGATTTTGAAGAGA+TGG | + | chr8.1:49738441-49738460 | MS.gene070616:CDS | 40.0% |
| !! | GGTAGCTCTAGAGTTAGAAT+TGG | + | chr8.1:49738354-49738373 | MS.gene070616:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | + | chr8.1:49738116-49738135 | MS.gene070616:CDS | 45.0% | |
| AACGGTGAAGTACATGTACC+GGG | + | chr8.1:49737199-49737218 | MS.gene070616:intron | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | + | chr8.1:49738117-49738136 | MS.gene070616:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | + | chr8.1:49737997-49738016 | MS.gene070616:CDS | 45.0% | |
| GAAGGAGGCGGAAAAACTAA+GGG | + | chr8.1:49738324-49738343 | MS.gene070616:CDS | 45.0% | |
| GAGCTTCTTGATCCTGAAAG+AGG | + | chr8.1:49737839-49737858 | MS.gene070616:CDS | 45.0% | |
| GCCAGCAAGACACTTACAAA+AGG | + | chr8.1:49736818-49736837 | MS.gene070616:CDS | 45.0% | |
| GCCTTGTGTTCAATCTGCTT+TGG | + | chr8.1:49738276-49738295 | MS.gene070616:CDS | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | + | chr8.1:49738027-49738046 | MS.gene070616:CDS | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | + | chr8.1:49738006-49738025 | MS.gene070616:CDS | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | + | chr8.1:49738104-49738123 | MS.gene070616:CDS | 45.0% | |
| TACTCTGAGCCTTTCATCCT+TGG | + | chr8.1:49736562-49736581 | MS.gene070616:CDS | 45.0% | |
| TGAAGGAGGCGGAAAAACTA+AGG | + | chr8.1:49738323-49738342 | MS.gene070616:CDS | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | + | chr8.1:49738417-49738436 | MS.gene070616:CDS | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | - | chr8.1:49738000-49738019 | None:intergenic | 45.0% |
| !!! | CCCTTCGCTTATTTTGTGTC+AGG | + | chr8.1:49738087-49738106 | MS.gene070616:CDS | 45.0% |
| !!! | TTTAATTTTATAACTTTTTT+TGG | - | chr8.1:49737051-49737070 | None:intergenic | 5.0% |
| AGAAGGCCAACGCCAAAATG+TGG | + | chr8.1:49737985-49738004 | MS.gene070616:CDS | 50.0% | |
| CCAGAGCCAGAACTAGAAGA+AGG | + | chr8.1:49737968-49737987 | MS.gene070616:CDS | 50.0% | |
| CGAGCGATGAGAAGTTCACA+TGG | + | chr8.1:49736497-49736516 | MS.gene070616:CDS | 50.0% | |
| TCTGAGCCTTTCATCCTTGG+CGG | + | chr8.1:49736565-49736584 | MS.gene070616:CDS | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | + | chr8.1:49736686-49736705 | MS.gene070616:CDS | 50.0% | |
| !! | CCTTCTTCTAGTTCTGGCTC+TGG | - | chr8.1:49737971-49737990 | None:intergenic | 50.0% |
| !! | CGTTGGCCTTCTTCTAGTTC+TGG | - | chr8.1:49737977-49737996 | None:intergenic | 50.0% |
| !! | TCTCGACCACATTTTGGCGT+TGG | - | chr8.1:49737994-49738013 | None:intergenic | 50.0% |
| !! | TGCAGCAAGAGACTTGTTGG+AGG | + | chr8.1:49738420-49738439 | MS.gene070616:CDS | 50.0% |
| CATACCATGGATAGCCGCCA+AGG | - | chr8.1:49736582-49736601 | None:intergenic | 55.0% | |
| GAATGGGCGTTCACCGCTTT+GGG | + | chr8.1:49738133-49738152 | MS.gene070616:CDS | 55.0% | |
| GGATAGCCGCCAAGGATGAA+AGG | - | chr8.1:49736574-49736593 | None:intergenic | 55.0% | |
| TACCGTACGCGTACCCAGTA+CGG | - | chr8.1:49737232-49737251 | None:intergenic | 55.0% | |
| TCATCCTTGGCGGCTATCCA+TGG | + | chr8.1:49736575-49736594 | MS.gene070616:CDS | 55.0% | |
| ACCCAGTACGGGTGTGTACC+CGG | - | chr8.1:49737220-49737239 | None:intergenic | 60.0% | |
| ACCCGTACTGGGTACGCGTA+CGG | + | chr8.1:49737227-49737246 | MS.gene070616:intron | 60.0% | |
| ACCGGGTACACACCCGTACT+GGG | + | chr8.1:49737216-49737235 | MS.gene070616:intron | 60.0% | |
| ACCGTACGCGTACCCAGTAC+GGG | - | chr8.1:49737231-49737250 | None:intergenic | 60.0% | |
| GGAATGGGCGTTCACCGCTT+TGG | + | chr8.1:49738132-49738151 | MS.gene070616:CDS | 60.0% | |
| GGGTACGCGTACGGTACTTG+TGG | + | chr8.1:49737236-49737255 | MS.gene070616:intron | 60.0% | |
| TACCGGGTACACACCCGTAC+TGG | + | chr8.1:49737215-49737234 | MS.gene070616:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 49736465 | 49738498 | 49736465 | ID=MS.gene070616 |
| chr8.1 | mRNA | 49736465 | 49738498 | 49736465 | ID=MS.gene070616.t1;Parent=MS.gene070616 |
| chr8.1 | exon | 49736465 | 49736596 | 49736465 | ID=MS.gene070616.t1.exon1;Parent=MS.gene070616.t1 |
| chr8.1 | CDS | 49736465 | 49736596 | 49736465 | ID=cds.MS.gene070616.t1;Parent=MS.gene070616.t1 |
| chr8.1 | exon | 49736679 | 49736839 | 49736679 | ID=MS.gene070616.t1.exon2;Parent=MS.gene070616.t1 |
| chr8.1 | CDS | 49736679 | 49736839 | 49736679 | ID=cds.MS.gene070616.t1;Parent=MS.gene070616.t1 |
| chr8.1 | exon | 49737777 | 49738498 | 49737777 | ID=MS.gene070616.t1.exon3;Parent=MS.gene070616.t1 |
| chr8.1 | CDS | 49737777 | 49738498 | 49737777 | ID=cds.MS.gene070616.t1;Parent=MS.gene070616.t1 |
| Gene Sequence |
| Protein sequence |
