Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072386.t1 | XP_024627116.1 | 98.1 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 2.20E-78 | 301.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072386.t1 | O48528 | 67.5 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 1.1e-51 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072386.t1 | A2Q4T7 | 98.1 | 159 | 3 | 0 | 1 | 159 | 1 | 159 | 1.6e-78 | 301.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene072386 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene049703 | MS.gene072386 | -0.814495 | 1.50E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene072386 | 0.846273 | 2.41E-59 | -1.69E-46 |
| MS.gene050288 | MS.gene072386 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene050320 | MS.gene072386 | 0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene072386 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene050918 | MS.gene072386 | 0.803303 | 3.72E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene072386 | 0.854136 | 1.50E-61 | -1.69E-46 |
| MS.gene051245 | MS.gene072386 | 0.877468 | 6.14E-69 | -1.69E-46 |
| MS.gene051746 | MS.gene072386 | 0.830763 | 2.44E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene072386 | 0.829068 | 6.33E-55 | -1.69E-46 |
| MS.gene051756 | MS.gene072386 | 0.863096 | 3.18E-64 | -1.69E-46 |
| MS.gene051850 | MS.gene072386 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene072386 | 0.824856 | 6.43E-54 | -1.69E-46 |
| MS.gene052202 | MS.gene072386 | 0.81618 | 6.31E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene072386 | 0.840789 | 7.03E-58 | -1.69E-46 |
| MS.gene053590 | MS.gene072386 | 0.819056 | 1.42E-52 | -1.69E-46 |
| MS.gene055174 | MS.gene072386 | 0.818716 | 1.69E-52 | -1.69E-46 |
| MS.gene055424 | MS.gene072386 | 0.813512 | 2.47E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene072386 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene072386 | 0.833495 | 5.16E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene072386 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene072386 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene072386 | 0.834325 | 3.20E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene072386 | 0.836695 | 8.05E-57 | -1.69E-46 |
| MS.gene057140 | MS.gene072386 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene057234 | MS.gene072386 | 0.877174 | 7.76E-69 | -1.69E-46 |
| MS.gene057451 | MS.gene072386 | -0.812162 | 4.87E-51 | -1.69E-46 |
| MS.gene057452 | MS.gene072386 | -0.848091 | 7.65E-60 | -1.69E-46 |
| MS.gene058054 | MS.gene072386 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene072386 | 0.849712 | 2.71E-60 | -1.69E-46 |
| MS.gene058182 | MS.gene072386 | 0.83142 | 1.69E-55 | -1.69E-46 |
| MS.gene058238 | MS.gene072386 | 0.842862 | 2.00E-58 | -1.69E-46 |
| MS.gene058646 | MS.gene072386 | 0.818 | 2.46E-52 | -1.69E-46 |
| MS.gene058654 | MS.gene072386 | 0.838234 | 3.25E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene072386 | 0.862633 | 4.41E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene072386 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene072386 | 0.846217 | 2.50E-59 | -1.69E-46 |
| MS.gene060463 | MS.gene072386 | 0.828763 | 7.50E-55 | -1.69E-46 |
| MS.gene060465 | MS.gene072386 | 0.834894 | 2.30E-56 | -1.69E-46 |
| MS.gene061145 | MS.gene072386 | 0.826579 | 2.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072386.t1 | AT2G42210 | 67.532 | 154 | 50 | 0 | 1 | 154 | 15 | 168 | 7.55e-71 | 211 |
| MS.gene072386.t1 | AT2G42210 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 7.89e-71 | 211 |
| MS.gene072386.t1 | AT2G42210 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 7.89e-71 | 211 |
| MS.gene072386.t1 | AT2G42210 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 7.89e-71 | 211 |
| MS.gene072386.t1 | AT2G42210 | 67.532 | 154 | 50 | 0 | 1 | 154 | 1 | 154 | 7.89e-71 | 211 |
Find 44 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAGTTGCTGGCACTATC+TGG | 0.151026 | 7.4:+15981668 | MS.gene072386:CDS |
| TTCCCTTCATCATGTTTAAA+AGG | 0.206706 | 7.4:-15983091 | None:intergenic |
| TGAGAGAAGTGTTGCTCTTC+CGG | 0.269686 | 7.4:+15981729 | MS.gene072386:CDS |
| GAGAGAAGTGTTGCTCTTCC+GGG | 0.309934 | 7.4:+15981730 | MS.gene072386:CDS |
| GTTGCTGGTGCAACTATTCT+TGG | 0.345412 | 7.4:+15981892 | MS.gene072386:CDS |
| GCTGTTGGTGGATTTGTTGC+TGG | 0.348409 | 7.4:+15981877 | MS.gene072386:CDS |
| GCAACAACTGGTTTAGTTGC+TGG | 0.371072 | 7.4:+15981658 | MS.gene072386:CDS |
| TTTAGTTGCTGGCACTATCT+GGG | 0.403267 | 7.4:+15981669 | MS.gene072386:CDS |
| CATTAGAACTTTGAAGATGA+TGG | 0.404869 | 7.4:+15981756 | MS.gene072386:CDS |
| ATGAAGAGGGATCTTGTAAA+TGG | 0.414469 | 7.4:+15981853 | MS.gene072386:CDS |
| AGTCTACATAGGGGTGGAAC+AGG | 0.418652 | 7.4:+15981813 | MS.gene072386:CDS |
| TGTGAAAGCCAATGCTGATC+CGG | 0.457987 | 7.4:-15983041 | None:intergenic |
| CTTGTAAATGGTGCTGTTGG+TGG | 0.465052 | 7.4:+15981865 | MS.gene072386:CDS |
| ATCTCAACTGCAATTTCTGC+CGG | 0.488258 | 7.4:+15983022 | MS.gene072386:CDS |
| AATTTCTGCCGGATCAGCAT+TGG | 0.497080 | 7.4:+15983033 | MS.gene072386:CDS |
| GACTCCTCCTATGGCGGCAA+AGG | 0.503480 | 7.4:-15981794 | None:intergenic |
| AACAGGTGGTGCAGAACTAC+AGG | 0.509492 | 7.4:+15981830 | MS.gene072386:CDS |
| TTGAAGATGATGGGTGGCTA+TGG | 0.511278 | 7.4:+15981766 | MS.gene072386:CDS |
| ATTAGAACTTTGAAGATGAT+GGG | 0.515393 | 7.4:+15981757 | MS.gene072386:CDS |
| TTCATCATGTTTAAAAGGCG+TGG | 0.528434 | 7.4:-15983086 | None:intergenic |
| GGAGCGACCTTTGCCGCCAT+AGG | 0.530743 | 7.4:+15981787 | MS.gene072386:CDS |
| ACGTAGGTACTTCGAGGATG+AGG | 0.541797 | 7.4:+15981606 | MS.gene072386:CDS |
| GCGACCTTTGCCGCCATAGG+AGG | 0.543885 | 7.4:+15981790 | MS.gene072386:CDS |
| TTAGTTGCTGGCACTATCTG+GGG | 0.550686 | 7.4:+15981670 | MS.gene072386:CDS |
| CCATAGGAGGAGTCTACATA+GGG | 0.550718 | 7.4:+15981803 | MS.gene072386:CDS |
| CCCTATGTAGACTCCTCCTA+TGG | 0.554940 | 7.4:-15981803 | None:intergenic |
| GGGGTACTGTAGTTGCCACC+TGG | 0.555518 | 7.4:+15981689 | MS.gene072386:CDS |
| GATCTTGTAAATGGTGCTGT+TGG | 0.564385 | 7.4:+15981862 | MS.gene072386:CDS |
| AGAGAAGTGTTGCTCTTCCG+GGG | 0.565741 | 7.4:+15981731 | MS.gene072386:CDS |
| TTCAAAGTTCTAATGAGCCC+CGG | 0.577416 | 7.4:-15981748 | None:intergenic |
| AGCAGAACGTAGGTACTTCG+AGG | 0.590571 | 7.4:+15981600 | MS.gene072386:CDS |
| TGCAGAACTACAGGATGAAG+AGG | 0.608336 | 7.4:+15981839 | MS.gene072386:CDS |
| CTACATAGGGGTGGAACAGG+TGG | 0.622608 | 7.4:+15981816 | MS.gene072386:CDS |
| GCAACTATTCTTGGTTACAG+AGG | 0.629555 | 7.4:+15981901 | MS.gene072386:CDS |
| GCCATAGGAGGAGTCTACAT+AGG | 0.633072 | 7.4:+15981802 | MS.gene072386:CDS |
| AGGAGGAGTCTACATAGGGG+TGG | 0.649086 | 7.4:+15981807 | MS.gene072386:CDS |
| AACACGAGGAACATCATACC+AGG | 0.650917 | 7.4:-15981707 | None:intergenic |
| TATGTAGACTCCTCCTATGG+CGG | 0.661958 | 7.4:-15981800 | None:intergenic |
| GCAGAACTACAGGATGAAGA+GGG | 0.663987 | 7.4:+15981840 | MS.gene072386:CDS |
| AGAACTTTGAAGATGATGGG+TGG | 0.665092 | 7.4:+15981760 | MS.gene072386:CDS |
| GCAACACTTCTCTCAACACG+AGG | 0.700649 | 7.4:-15981721 | None:intergenic |
| TAATGGACTCAGCAGAACGT+AGG | 0.713597 | 7.4:+15981590 | None:intergenic |
| ACGAGGAACATCATACCAGG+TGG | 0.746444 | 7.4:-15981704 | None:intergenic |
| CATAGGAGGAGTCTACATAG+GGG | 0.784446 | 7.4:+15981804 | MS.gene072386:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTCTGATAATTATATG+AGG | - | chr7.4:15981936-15981955 | None:intergenic | 20.0% |
| !! | ATTGTCAAAATAAAAAAGTC+AGG | - | chr7.4:15982665-15982684 | None:intergenic | 20.0% |
| !! | TTTCTTCAGTTATTTGTTTA+AGG | + | chr7.4:15982908-15982927 | MS.gene072386:intron | 20.0% |
| ! | AAGACTTCACAAAATGAATA+CGG | - | chr7.4:15982584-15982603 | None:intergenic | 25.0% |
| ! | ACCACTTCTGAATTATATTA+TGG | - | chr7.4:15982067-15982086 | None:intergenic | 25.0% |
| ! | CAATAAAGAGAAAGAAATGA+AGG | - | chr7.4:15982418-15982437 | None:intergenic | 25.0% |
| ! | CTACTAAGGTAATTATAGAA+TGG | - | chr7.4:15982477-15982496 | None:intergenic | 25.0% |
| ! | CTGATAATTATATGAGGAAA+GGG | - | chr7.4:15981930-15981949 | None:intergenic | 25.0% |
| ! | TAACACACAAGAAACATTTA+GGG | - | chr7.4:15982850-15982869 | None:intergenic | 25.0% |
| ! | TCCATAATATAATTCAGAAG+TGG | + | chr7.4:15982063-15982082 | MS.gene072386:intron | 25.0% |
| ! | TCTGATAATTATATGAGGAA+AGG | - | chr7.4:15981931-15981950 | None:intergenic | 25.0% |
| ! | TTAACACACAAGAAACATTT+AGG | - | chr7.4:15982851-15982870 | None:intergenic | 25.0% |
| !! | ATCACTCACAAAAACTTTTA+AGG | + | chr7.4:15981633-15981652 | MS.gene072386:CDS | 25.0% |
| !! | ATTAGAACTTTGAAGATGAT+GGG | + | chr7.4:15981757-15981776 | MS.gene072386:CDS | 25.0% |
| !! | TAGTTCTATTGATATATTCC+CGG | + | chr7.4:15982447-15982466 | MS.gene072386:intron | 25.0% |
| !! | TCACTCACAAAAACTTTTAA+GGG | + | chr7.4:15981634-15981653 | MS.gene072386:CDS | 25.0% |
| !! | TGCTCTTTTATTATCAGTTA+AGG | + | chr7.4:15982688-15982707 | MS.gene072386:intron | 25.0% |
| AACACACAAGAAACATTTAG+GGG | - | chr7.4:15982849-15982868 | None:intergenic | 30.0% | |
| AAGCATTATGGAAATAACTC+TGG | - | chr7.4:15982311-15982330 | None:intergenic | 30.0% | |
| AATGAGTTAATCATGTCGAA+AGG | - | chr7.4:15982138-15982157 | None:intergenic | 30.0% | |
| ACAAAATACCTCCAAATACA+AGG | - | chr7.4:15982716-15982735 | None:intergenic | 30.0% | |
| AGAATCTGTTAGAAGTTCAT+TGG | - | chr7.4:15982384-15982403 | None:intergenic | 30.0% | |
| AGCATTATGGAAATAACTCT+GGG | - | chr7.4:15982310-15982329 | None:intergenic | 30.0% | |
| AGTTCTATTGATATATTCCC+GGG | + | chr7.4:15982448-15982467 | MS.gene072386:intron | 30.0% | |
| ATAAAATCTACAAGCCTTCT+AGG | - | chr7.4:15982637-15982656 | None:intergenic | 30.0% | |
| GTAATTATAGAATGGTTTCC+CGG | - | chr7.4:15982469-15982488 | None:intergenic | 30.0% | |
| TAACAAGCTTTGCATAATGT+CGG | + | chr7.4:15982980-15982999 | MS.gene072386:intron | 30.0% | |
| TAATTATAGAATGGTTTCCC+GGG | - | chr7.4:15982468-15982487 | None:intergenic | 30.0% | |
| TACTTTAGTCCATCTATTCA+AGG | + | chr7.4:15982815-15982834 | MS.gene072386:intron | 30.0% | |
| TAGTAGATAAGCATCATATG+AGG | + | chr7.4:15982086-15982105 | MS.gene072386:intron | 30.0% | |
| TATGAGTTATGTGATTTCAG+TGG | + | chr7.4:15982750-15982769 | MS.gene072386:intron | 30.0% | |
| TCATTGTGCTAAATTGTTAC+TGG | + | chr7.4:15982153-15982172 | MS.gene072386:intron | 30.0% | |
| TCGAAAGGAAGAAAAAACAA+TGG | - | chr7.4:15982123-15982142 | None:intergenic | 30.0% | |
| TTCCCTTCATCATGTTTAAA+AGG | - | chr7.4:15983094-15983113 | None:intergenic | 30.0% | |
| TTTGTTTAAGGAGCTCTATA+TGG | + | chr7.4:15982920-15982939 | MS.gene072386:intron | 30.0% | |
| ! | ATAATGCTTTTGTGAAACAC+CGG | + | chr7.4:15982322-15982341 | MS.gene072386:intron | 30.0% |
| ! | CATTAGAACTTTGAAGATGA+TGG | + | chr7.4:15981756-15981775 | MS.gene072386:CDS | 30.0% |
| ! | TAGAAGGCTTGTAGATTTTA+TGG | + | chr7.4:15982636-15982655 | MS.gene072386:intron | 30.0% |
| ! | TGTCTGTGTTTCTATGTATT+GGG | + | chr7.4:15982536-15982555 | MS.gene072386:intron | 30.0% |
| ! | TTTTAAACATGATGAAGGGA+AGG | + | chr7.4:15983093-15983112 | MS.gene072386:CDS | 30.0% |
| !! | ATAGATGGACTAAAGTACAA+TGG | - | chr7.4:15982812-15982831 | None:intergenic | 30.0% |
| ACAAGAAACATTTAGGGGTT+AGG | - | chr7.4:15982844-15982863 | None:intergenic | 35.0% | |
| ACACTGCAGCAATGAAATAT+AGG | - | chr7.4:15982267-15982286 | None:intergenic | 35.0% | |
| AGATAAGCATCATATGAGGA+AGG | + | chr7.4:15982090-15982109 | MS.gene072386:intron | 35.0% | |
| AGCAAGAAATTATCACCTTG+TGG | + | chr7.4:15982510-15982529 | MS.gene072386:intron | 35.0% | |
| ATGAAGAGGGATCTTGTAAA+TGG | + | chr7.4:15981853-15981872 | MS.gene072386:CDS | 35.0% | |
| CAGTTAAGGATCCTTGTATT+TGG | + | chr7.4:15982702-15982721 | MS.gene072386:intron | 35.0% | |
| CTTCACAAAATGAATACGGA+TGG | - | chr7.4:15982580-15982599 | None:intergenic | 35.0% | |
| GCAGTGTATATGATAGAATC+CGG | - | chr7.4:15982344-15982363 | None:intergenic | 35.0% | |
| TTAAGGATCCTTGTATTTGG+AGG | + | chr7.4:15982705-15982724 | MS.gene072386:intron | 35.0% | |
| TTACCTTAGTAGTGCATCTT+TGG | + | chr7.4:15982485-15982504 | MS.gene072386:intron | 35.0% | |
| TTCATCATGTTTAAAAGGCG+TGG | - | chr7.4:15983089-15983108 | None:intergenic | 35.0% | |
| TTTGTAGCAACTAGCAAGAA+AGG | - | chr7.4:15982783-15982802 | None:intergenic | 35.0% | |
| ! | ACGCCTTTTAAACATGATGA+AGG | + | chr7.4:15983088-15983107 | MS.gene072386:CDS | 35.0% |
| ! | CATAATGTCGGTTATACTGT+AGG | + | chr7.4:15982992-15983011 | MS.gene072386:intron | 35.0% |
| ! | CGCCTTTTAAACATGATGAA+GGG | + | chr7.4:15983089-15983108 | MS.gene072386:CDS | 35.0% |
| ! | GTGAAGTCTTATGTCGTTTA+AGG | + | chr7.4:15982594-15982613 | MS.gene072386:intron | 35.0% |
| ! | GTGTCTGTGTTTCTATGTAT+TGG | + | chr7.4:15982535-15982554 | MS.gene072386:intron | 35.0% |
| !! | GGTGTTTCACAAAAGCATTA+TGG | - | chr7.4:15982323-15982342 | None:intergenic | 35.0% |
| !!! | ATCTGCAGTCATTGATTTTG+CGG | + | chr7.4:15983063-15983082 | MS.gene072386:CDS | 35.0% |
| ATAACTCATAGCTTCTCCAC+TGG | - | chr7.4:15982740-15982759 | None:intergenic | 40.0% | |
| ATCTCAACTGCAATTTCTGC+CGG | + | chr7.4:15983022-15983041 | MS.gene072386:CDS | 40.0% | |
| GCAACTATTCTTGGTTACAG+AGG | + | chr7.4:15981901-15981920 | MS.gene072386:CDS | 40.0% | |
| GTTAGGCATCCTTGAATAGA+TGG | - | chr7.4:15982827-15982846 | None:intergenic | 40.0% | |
| TAACTCATAGCTTCTCCACT+GGG | - | chr7.4:15982739-15982758 | None:intergenic | 40.0% | |
| TAGCCAAAGATGCACTACTA+AGG | - | chr7.4:15982491-15982510 | None:intergenic | 40.0% | |
| TCATAGAACCTCAACCTAGA+AGG | + | chr7.4:15982620-15982639 | MS.gene072386:intron | 40.0% | |
| TGCTGCAGTGTTCTGTAATT+GGG | + | chr7.4:15982276-15982295 | MS.gene072386:intron | 40.0% | |
| TTGCTGCAGTGTTCTGTAAT+TGG | + | chr7.4:15982275-15982294 | MS.gene072386:intron | 40.0% | |
| TTTAGTTGCTGGCACTATCT+GGG | + | chr7.4:15981669-15981688 | MS.gene072386:CDS | 40.0% | |
| ! | ATGTCGGTTATACTGTAGGA+AGG | + | chr7.4:15982996-15983015 | MS.gene072386:intron | 40.0% |
| ! | CTGTGTTTCTATGTATTGGG+AGG | + | chr7.4:15982539-15982558 | MS.gene072386:intron | 40.0% |
| ! | TGTTTCTATGTATTGGGAGG+AGG | + | chr7.4:15982542-15982561 | MS.gene072386:intron | 40.0% |
| ! | TTCAAAGTTCTAATGAGCCC+CGG | - | chr7.4:15981751-15981770 | None:intergenic | 40.0% |
| !! | ACTTTTAAGGGTGCAACAAC+TGG | + | chr7.4:15981646-15981665 | MS.gene072386:CDS | 40.0% |
| !! | AGAACTTTGAAGATGATGGG+TGG | + | chr7.4:15981760-15981779 | MS.gene072386:CDS | 40.0% |
| !! | GATCTTGTAAATGGTGCTGT+TGG | + | chr7.4:15981862-15981881 | MS.gene072386:CDS | 40.0% |
| AACACGAGGAACATCATACC+AGG | - | chr7.4:15981710-15981729 | None:intergenic | 45.0% | |
| AATTTCTGCCGGATCAGCAT+TGG | + | chr7.4:15983033-15983052 | MS.gene072386:CDS | 45.0% | |
| CATAGGAGGAGTCTACATAG+GGG | + | chr7.4:15981804-15981823 | MS.gene072386:CDS | 45.0% | |
| CCATAGGAGGAGTCTACATA+GGG | + | chr7.4:15981803-15981822 | MS.gene072386:CDS | 45.0% | |
| GAAACACAGACACAACCACA+AGG | - | chr7.4:15982528-15982547 | None:intergenic | 45.0% | |
| GCAGAACTACAGGATGAAGA+GGG | + | chr7.4:15981840-15981859 | MS.gene072386:CDS | 45.0% | |
| GTTGCTGGTGCAACTATTCT+TGG | + | chr7.4:15981892-15981911 | MS.gene072386:CDS | 45.0% | |
| GTTTAGTTGCTGGCACTATC+TGG | + | chr7.4:15981668-15981687 | MS.gene072386:CDS | 45.0% | |
| TATGTAGACTCCTCCTATGG+CGG | - | chr7.4:15981803-15981822 | None:intergenic | 45.0% | |
| TCTACAAGCCTTCTAGGTTG+AGG | - | chr7.4:15982631-15982650 | None:intergenic | 45.0% | |
| TGAAGAAACTCGCAGCATGA+GGG | - | chr7.4:15982896-15982915 | None:intergenic | 45.0% | |
| TGCAGAACTACAGGATGAAG+AGG | + | chr7.4:15981839-15981858 | MS.gene072386:CDS | 45.0% | |
| TGTGAAAGCCAATGCTGATC+CGG | - | chr7.4:15983044-15983063 | None:intergenic | 45.0% | |
| TTAGTTGCTGGCACTATCTG+GGG | + | chr7.4:15981670-15981689 | MS.gene072386:CDS | 45.0% | |
| ! | GCAACAACTGGTTTAGTTGC+TGG | + | chr7.4:15981658-15981677 | MS.gene072386:CDS | 45.0% |
| !! | CTTGTAAATGGTGCTGTTGG+TGG | + | chr7.4:15981865-15981884 | MS.gene072386:CDS | 45.0% |
| !! | TGAGAGAAGTGTTGCTCTTC+CGG | + | chr7.4:15981729-15981748 | MS.gene072386:CDS | 45.0% |
| !! | TTGAAGATGATGGGTGGCTA+TGG | + | chr7.4:15981766-15981785 | MS.gene072386:CDS | 45.0% |
| !!! | TTGGAGGTATTTTGTCCCAG+TGG | + | chr7.4:15982721-15982740 | MS.gene072386:intron | 45.0% |
| AACAGGTGGTGCAGAACTAC+AGG | + | chr7.4:15981830-15981849 | MS.gene072386:CDS | 50.0% | |
| ACGAGGAACATCATACCAGG+TGG | - | chr7.4:15981707-15981726 | None:intergenic | 50.0% | |
| ACGTAGGTACTTCGAGGATG+AGG | + | chr7.4:15981606-15981625 | MS.gene072386:CDS | 50.0% | |
| AGCAGAACGTAGGTACTTCG+AGG | + | chr7.4:15981600-15981619 | MS.gene072386:CDS | 50.0% | |
| AGTCTACATAGGGGTGGAAC+AGG | + | chr7.4:15981813-15981832 | MS.gene072386:CDS | 50.0% | |
| CCCTATGTAGACTCCTCCTA+TGG | - | chr7.4:15981806-15981825 | None:intergenic | 50.0% | |
| CTGAAGAAACTCGCAGCATG+AGG | - | chr7.4:15982897-15982916 | None:intergenic | 50.0% | |
| GCAACACTTCTCTCAACACG+AGG | - | chr7.4:15981724-15981743 | None:intergenic | 50.0% | |
| GCCATAGGAGGAGTCTACAT+AGG | + | chr7.4:15981802-15981821 | MS.gene072386:CDS | 50.0% | |
| !! | AGAGAAGTGTTGCTCTTCCG+GGG | + | chr7.4:15981731-15981750 | MS.gene072386:CDS | 50.0% |
| !! | GAGAGAAGTGTTGCTCTTCC+GGG | + | chr7.4:15981730-15981749 | MS.gene072386:CDS | 50.0% |
| !! | GCTGTTGGTGGATTTGTTGC+TGG | + | chr7.4:15981877-15981896 | MS.gene072386:CDS | 50.0% |
| AGGAGGAGTCTACATAGGGG+TGG | + | chr7.4:15981807-15981826 | MS.gene072386:CDS | 55.0% | |
| CTACATAGGGGTGGAACAGG+TGG | + | chr7.4:15981816-15981835 | MS.gene072386:CDS | 55.0% | |
| GACTCCTCCTATGGCGGCAA+AGG | - | chr7.4:15981797-15981816 | None:intergenic | 60.0% | |
| !! | GGGGTACTGTAGTTGCCACC+TGG | + | chr7.4:15981689-15981708 | MS.gene072386:CDS | 60.0% |
| GCGACCTTTGCCGCCATAGG+AGG | + | chr7.4:15981790-15981809 | MS.gene072386:CDS | 65.0% | |
| GGAGCGACCTTTGCCGCCAT+AGG | + | chr7.4:15981787-15981806 | MS.gene072386:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15981592 | 15983162 | 15981592 | ID=MS.gene072386 |
| chr7.4 | mRNA | 15981592 | 15983162 | 15981592 | ID=MS.gene072386.t1;Parent=MS.gene072386 |
| chr7.4 | exon | 15981592 | 15981922 | 15981592 | ID=MS.gene072386.t1.exon1;Parent=MS.gene072386.t1 |
| chr7.4 | CDS | 15981592 | 15981922 | 15981592 | ID=cds.MS.gene072386.t1;Parent=MS.gene072386.t1 |
| chr7.4 | exon | 15983014 | 15983162 | 15983014 | ID=MS.gene072386.t1.exon2;Parent=MS.gene072386.t1 |
| chr7.4 | CDS | 15983014 | 15983162 | 15983014 | ID=cds.MS.gene072386.t1;Parent=MS.gene072386.t1 |
| Gene Sequence |
| Protein sequence |
