AlfalfaGEDB | MS.gene073003

M. sativa cultivar XinJiangDaYe / MS.gene073003

KEGG: K12859
GO: GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904
PFAM: PF02966.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073003.t1	GAU28190.1	69	142	16	2	1	114	1	142	5.90E-46	193.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073003.t1	Q9FE62	66.9	142	19	2	1	114	1	142	1.6e-47	189.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073003.t1	A0A2Z6MWW0	69.0	142	16	2	1	114	1	142	4.3e-46	193.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049424	MS.gene073003	0.839577	1.46E-57	-1.69E-46
MS.gene049653	MS.gene073003	0.826785	2.24E-54	-1.69E-46
MS.gene050237	MS.gene073003	0.805159	1.53E-49	-1.69E-46
MS.gene050277	MS.gene073003	0.835484	1.63E-56	-1.69E-46
MS.gene050719	MS.gene073003	0.818467	1.93E-52	-1.69E-46
MS.gene050721	MS.gene073003	0.821878	3.20E-53	-1.69E-46
MS.gene050724	MS.gene073003	0.815749	7.88E-52	-1.69E-46
MS.gene050815	MS.gene073003	0.824899	6.29E-54	-1.69E-46
MS.gene050987	MS.gene073003	0.818321	2.08E-52	-1.69E-46
MS.gene051241	MS.gene073003	0.812825	3.49E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073003.t1	MTR_3g108770	69.014	142	16	2	1	114	1	142	3.88e-64	191
MS.gene073003.t1	MTR_1g045900	68.310	142	17	2	1	114	1	142	1.30e-63	190
MS.gene073003.t1	MTR_4g075190	62.937	143	23	3	1	114	1	142	1.41e-59	179
MS.gene073003.t1	MTR_5g075850	72.222	54	13	1	63	114	1	54	4.28e-22	82.4
MS.gene073003.t1	MTR_5g075820	68.889	45	14	0	70	114	110	154	1.13e-16	71.2
MS.gene073003.t1	MTR_1g054195	71.111	45	12	1	70	113	175	219	1.43e-16	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073003.t1	AT5G08290	66.901	142	19	2	1	114	1	142	1.08e-62	187
MS.gene073003.t1	AT5G08290	98.214	56	1	0	59	114	47	102	3.21e-36	119

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Find 34 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAACAAGATCAATT+GGG	0.514098	3.4:-94161096	MS.gene073003:CDS
AAGCACATCATGATAGACCT+TGG	0.567283	3.4:-94161125	MS.gene073003:CDS
AGACTGTCTACAGAGGTGCA+AGG	0.715363	3.4:-94161037	MS.gene073003:CDS
AGAGGTGCAAGGAAGGGGCG+TGG	0.611606	3.4:-94161026	MS.gene073003:CDS
AGATTGATACATTCTAGTAA+CGG	0.666479	3.4:+94160967	None:intergenic
ATCATGATAGACCTTGGAAC+TGG	0.486256	3.4:-94161119	MS.gene073003:CDS
ATCATTGAGACTGTCTACAG+AGG	0.717834	3.4:-94161044	MS.gene073003:CDS
ATGCTGCCTCACTTGCATTC+GGG	0.490375	3.4:-94162066	MS.gene073003:CDS
ATTCTAGTAACGGTACTTGG+TGG	0.586412	3.4:+94160977	None:intergenic
CAAGATCAATTGGGCTATGA+AGG	0.451707	3.4:-94161087	MS.gene073003:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATATTGGGGAAATAC+TGG	+	chr3.4:94161422-94161441	None:intergenic	30.0%
CCATCACAATAACAATTTCA+TGG	-	chr3.4:94161575-94161594	MS.gene073003:intron	30.0%
GAAACAACAACAAGATCAAT+TGG	-	chr3.4:94161958-94161977	MS.gene073003:intron	30.0%
TCATACATAGTGTTAAAGTC+AGG	+	chr3.4:94161870-94161889	None:intergenic	30.0%
TGAGAAGCAGAAACTATATT+GGG	+	chr3.4:94161432-94161451	None:intergenic	30.0%
TGAGCGAAACTTGATTAATT+AGG	-	chr3.4:94161714-94161733	MS.gene073003:intron	30.0%
TGATGTATTTACAGAGAAAC+AGG	+	chr3.4:94161468-94161487	None:intergenic	30.0%
TTGAGAAGCAGAAACTATAT+TGG	+	chr3.4:94161433-94161452	None:intergenic	30.0%
AAGAAGAACATAACTGTGGA+AGG	+	chr3.4:94161903-94161922	None:intergenic	35.0%
AAGTAATGAATTTAGGGAGG+TGG	-	chr3.4:94161332-94161351	MS.gene073003:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	94160980	94162097	94160980	ID=MS.gene073003
chr3.4	mRNA	94160980	94162097	94160980	ID=MS.gene073003.t1;Parent=MS.gene073003
chr3.4	exon	94161978	94162097	94161978	ID=MS.gene073003.t1.exon1;Parent=MS.gene073003.t1
chr3.4	CDS	94161978	94162097	94161978	ID=cds.MS.gene073003.t1;Parent=MS.gene073003.t1
chr3.4	exon	94161602	94161654	94161602	ID=MS.gene073003.t1.exon2;Parent=MS.gene073003.t1
chr3.4	CDS	94161602	94161654	94161602	ID=cds.MS.gene073003.t1;Parent=MS.gene073003.t1
chr3.4	exon	94160980	94161151	94160980	ID=MS.gene073003.t1.exon3;Parent=MS.gene073003.t1
chr3.4	CDS	94160980	94161151	94160980	ID=cds.MS.gene073003.t1;Parent=MS.gene073003.t1

Gene Sequence

>MS.gene073003

ATGTCGTACATGCTGCCTCACTTGCATTCGGGATGGGCTGTTGATCAGGCAATCCTCGCTGAGGAGGAACGTCTCGTTGTCATCCGTTTTGGTCACGATTGGGATGAGACTTGTATGCAGGTACGTATAACATCAATCAATCAATCAATCAGTGTTTTATATTTTCATCTACTCATTCATTCACAGTAAAATATCAAGAACTGCTTAATTTGGAATGATGCTTTTTTATTAAGCAACAATTTCTTGTATGTATGTATGAGTTGAACAGTGCTATATAGCATGAATCTTTCTTGTATGAAAACAATACAGAACAGAAAACAGCCAATAATATATATAGGACATAAGAGAGATAAAGTAATGAATTTAGGGAGGTGGAGATTAATAAGATGCTCCAAATTCAAATTTGTTTCATGCTGATTTGTGTAGTTTTATTTCGTAACCAGTATTTCCCCAATATAGTTTCTGCTTCTCAACTTTTTCTGAAGCCTGTTTCTCTGTAAATACATCAACATCTCTACATGCTTAGAATATTTCTCTTTGCATATGAAGAATCATAAAGCTAATTCAAACTGAGTCATAGAGCTATTATCTTCAACCATCACAATAACAATTTCATGGATTTTACATGATGATACCACGAACACCACTGCGATTGGTATTATGATACATAATGTTTGTTTCTTTCAACAATCATCATGCACCAATTCTTAATTTTAGGTTGATAAGGGTTATATTGAGCGAAACTTGATTAATTAGGTTAGTGCTGCTGTTTGATTTGCTTTTTTTTTTTTTTTTTGGTGTGTGTCAAGATGGATGAGGTGCTGTCATCGGTTGCAGAGACAATAAAGAACTTTGCTGTGATATACCTTGTGGACATCACAGAGGTGCCTGACTTTAACACTATGTATGAGCTGTATGACCCTTCCACAGTTATGTTCTTCTTTAGGAACAAGCACATCATGATAGACCTTGGAACTGGAAACAACAACAAGATCAATTGGGCTATGAAGGACAAACAGGAGTTCATTGACATCATTGAGACTGTCTACAGAGGTGCAAGGAAGGGGCGTGGTCTTGTCATTGCTCCCAAAGATTACTCCACCAAGTACCGTTACTAG

Protein sequence

>MS.gene073003.t1

MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQYFPNIVSASQLFLKPVSLNKHIMIDLGTGNNNKINWAMKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY