Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073064.t1 | KEH35970.1 | 92.9 | 660 | 42 | 2 | 7 | 666 | 1 | 655 | 0.00E+00 | 1218 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073064.t1 | Q9LYE3 | 36.6 | 675 | 358 | 14 | 7 | 660 | 1 | 626 | 6.1e-107 | 389.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073064.t1 | G7J2X9 | 92.9 | 660 | 42 | 2 | 7 | 666 | 1 | 655 | 0.0e+00 | 1218.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene073064 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene073064 | 0.821482 | 3.94E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene073064 | 0.835575 | 1.55E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene073064 | 0.829502 | 4.97E-55 | -1.69E-46 |
| MS.gene050303 | MS.gene073064 | 0.812011 | 5.25E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene073064 | 0.82285 | 1.90E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene073064 | -0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene073064 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene073064 | 0.803297 | 3.73E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene073064 | 0.820894 | 5.39E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene073064 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene051210 | MS.gene073064 | 0.812295 | 4.56E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene073064 | 0.814047 | 1.88E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene073064 | 0.828949 | 6.76E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene073064 | 0.800029 | 1.75E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene073064 | 0.818134 | 2.30E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene073064 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene073064 | 0.830756 | 2.45E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene073064 | 0.806663 | 7.37E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene073064 | 0.825228 | 5.25E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene073064 | 0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene073064 | 0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene073064 | 0.839324 | 1.70E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene073064 | 0.800849 | 1.19E-48 | -1.69E-46 |
| MS.gene054658 | MS.gene073064 | 0.807587 | 4.70E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene073064 | 0.814403 | 1.57E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene073064 | 0.803046 | 4.20E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene073064 | 0.819202 | 1.31E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene073064 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene073064 | 0.819999 | 8.64E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene073064 | 0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene056552 | MS.gene073064 | 0.827505 | 1.51E-54 | -1.69E-46 |
| MS.gene05659 | MS.gene073064 | 0.807688 | 4.47E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene073064 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene073064 | 0.841321 | 5.10E-58 | -1.69E-46 |
| MS.gene057060 | MS.gene073064 | 0.808286 | 3.34E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene073064 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene073064 | 0.820509 | 6.61E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene073064 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene073064 | 0.817986 | 2.48E-52 | -1.69E-46 |
| MS.gene058168 | MS.gene073064 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene073064 | 0.807822 | 4.19E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene073064 | 0.80625 | 9.01E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene073064 | 0.809218 | 2.11E-50 | -1.69E-46 |
| MS.gene059331 | MS.gene073064 | 0.82735 | 1.64E-54 | -1.69E-46 |
| MS.gene059335 | MS.gene073064 | 0.82367 | 1.22E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene073064 | 0.822791 | 1.96E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene073064 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene073064 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene073064 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene073064 | 0.82811 | 1.08E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene073064 | 0.815386 | 9.50E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073064.t1 | MTR_3g109470 | 92.879 | 660 | 42 | 2 | 7 | 666 | 1 | 655 | 0.0 | 1241 |
| MS.gene073064.t1 | MTR_3g109470 | 92.879 | 660 | 42 | 2 | 7 | 666 | 1 | 655 | 0.0 | 1239 |
| MS.gene073064.t1 | MTR_3g109470 | 93.028 | 545 | 33 | 2 | 122 | 666 | 19 | 558 | 0.0 | 1009 |
| MS.gene073064.t1 | MTR_1g008670 | 62.286 | 175 | 60 | 3 | 17 | 185 | 20 | 194 | 1.81e-61 | 203 |
| MS.gene073064.t1 | MTR_1g008670 | 62.722 | 169 | 57 | 3 | 17 | 179 | 68 | 236 | 4.86e-58 | 196 |
| MS.gene073064.t1 | MTR_1g008670 | 61.272 | 173 | 61 | 3 | 17 | 183 | 20 | 192 | 6.29e-57 | 192 |
| MS.gene073064.t1 | MTR_1g008610 | 56.805 | 169 | 72 | 1 | 17 | 185 | 24 | 191 | 8.17e-54 | 183 |
| MS.gene073064.t1 | MTR_2g062470 | 51.136 | 176 | 85 | 1 | 17 | 192 | 20 | 194 | 5.36e-51 | 186 |
| MS.gene073064.t1 | MTR_2g062470 | 46.111 | 180 | 96 | 1 | 485 | 664 | 353 | 531 | 2.61e-49 | 181 |
| MS.gene073064.t1 | MTR_1445s0010 | 48.544 | 103 | 52 | 1 | 17 | 119 | 17 | 118 | 8.00e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073064.t1 | AT5G11470 | 36.963 | 652 | 337 | 16 | 32 | 660 | 26 | 626 | 7.80e-125 | 385 |
| MS.gene073064.t1 | AT5G11470 | 36.963 | 652 | 337 | 16 | 32 | 660 | 26 | 626 | 4.72e-124 | 384 |
| MS.gene073064.t1 | AT3G15605 | 37.427 | 171 | 70 | 1 | 13 | 183 | 10 | 143 | 2.51e-27 | 116 |
| MS.gene073064.t1 | AT3G15605 | 36.429 | 140 | 88 | 1 | 493 | 632 | 291 | 429 | 5.58e-18 | 87.8 |
| MS.gene073064.t1 | AT3G15605 | 37.313 | 134 | 82 | 2 | 493 | 625 | 207 | 339 | 4.19e-18 | 87.4 |
| MS.gene073064.t1 | AT3G15605 | 37.313 | 134 | 82 | 2 | 493 | 625 | 207 | 339 | 4.19e-18 | 87.4 |
| MS.gene073064.t1 | AT3G15605 | 36.765 | 136 | 82 | 3 | 493 | 625 | 207 | 341 | 1.71e-16 | 82.4 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTGCTGCTTGAAAATT+TGG | 0.078848 | 3.3:+89881954 | MS.gene073064:CDS |
| TCGGCAAATTAATCAAAATT+TGG | 0.093051 | 3.3:+89873571 | MS.gene073064:CDS |
| TAAATCACAGGATATTATTT+TGG | 0.169466 | 3.3:+89882424 | MS.gene073064:intron |
| TACCTCTAGCCTTGGTTTAA+AGG | 0.202833 | 3.3:+89876486 | MS.gene073064:CDS |
| TTGGCTTCTGGTGAAGGATT+AGG | 0.204999 | 3.3:+89873699 | MS.gene073064:CDS |
| TGGGGTTAATAAGGCTTCTT+TGG | 0.244605 | 3.3:+89876585 | MS.gene073064:CDS |
| GTAAGAAAGTTAAGATTCTA+TGG | 0.246282 | 3.3:+89873610 | MS.gene073064:CDS |
| GAAAGAGAATGGGGTTAATA+AGG | 0.256850 | 3.3:+89876576 | MS.gene073064:CDS |
| TGGCTTCTGGTGAAGGATTA+GGG | 0.261634 | 3.3:+89873700 | MS.gene073064:CDS |
| AACCCCATTCTCTTTCTCTT+TGG | 0.280643 | 3.3:-89876569 | None:intergenic |
| CGGCAAATTAATCAAAATTT+GGG | 0.284399 | 3.3:+89873572 | MS.gene073064:CDS |
| GACTAGAATATGCGGTCTTC+TGG | 0.293058 | 3.3:-89882481 | None:intergenic |
| AGAATCTGTCATTAGAAAAT+TGG | 0.317702 | 3.3:+89882661 | MS.gene073064:CDS |
| GGCTGTTTCTTGATGTCAAA+TGG | 0.319595 | 3.3:+89882689 | MS.gene073064:CDS |
| TCTTGCTTGTGCCCCAAGTT+TGG | 0.333509 | 3.3:-89877168 | None:intergenic |
| CTTGGCGGTCTTTCGAAACT+TGG | 0.333653 | 3.3:+89876313 | MS.gene073064:CDS |
| CGACAAATCAACAGGCGATT+GGG | 0.339266 | 3.3:+89876769 | MS.gene073064:CDS |
| AGCCCACTTGTGGGAAGCTT+TGG | 0.339688 | 3.3:+89885950 | MS.gene073064:intron |
| TCCAAGATTGATTCAGAAAT+AGG | 0.344057 | 3.3:+89876718 | MS.gene073064:CDS |
| GCATATTCTAGTCCTCATTC+TGG | 0.349043 | 3.3:+89882491 | MS.gene073064:CDS |
| GCCTATTTCTGAATCAATCT+TGG | 0.351496 | 3.3:-89876719 | None:intergenic |
| TGGAAGACTCCCTTGCATTC+CGG | 0.352038 | 3.3:+89885970 | MS.gene073064:CDS |
| TGTTGGGCAGCATAAAATAT+TGG | 0.354641 | 3.3:+89875678 | MS.gene073064:CDS |
| TTCTCTTTCTCTTTGGATAG+AGG | 0.359673 | 3.3:-89876562 | None:intergenic |
| GCTAGAGGAATGTGATAGTT+TGG | 0.367058 | 3.3:-89876626 | None:intergenic |
| AAGAAAGAGCGGACAAATCT+TGG | 0.368671 | 3.3:+89886245 | MS.gene073064:CDS |
| GTCTACAACCTCTCCAAACT+TGG | 0.369836 | 3.3:+89877155 | MS.gene073064:CDS |
| ATGGTAGGAATATCTAAAAT+TGG | 0.371517 | 3.3:+89876661 | MS.gene073064:CDS |
| CAACAACATTGAATATGATA+TGG | 0.374279 | 3.3:+89886201 | MS.gene073064:CDS |
| TGTTGATTCTAAGCCATCAT+TGG | 0.385061 | 3.3:+89876453 | MS.gene073064:CDS |
| TTGATTAATTTGCCGATAAA+CGG | 0.389001 | 3.3:-89873564 | None:intergenic |
| TCTGTTTATCTTTACAAAGA+TGG | 0.392051 | 3.3:+89873531 | MS.gene073064:CDS |
| ACATTCCTCTAGCGATGGTT+TGG | 0.401515 | 3.3:+89876636 | MS.gene073064:CDS |
| TTTGCATCTTCTACCATAGT+TGG | 0.402151 | 3.3:-89873393 | None:intergenic |
| TGCTATCGTTTCTTTGATGT+TGG | 0.402429 | 3.3:+89875661 | MS.gene073064:CDS |
| CTCTAGCGATGGTTTGGAAA+TGG | 0.406079 | 3.3:+89876642 | MS.gene073064:CDS |
| TAGGCGGACGTGATATTGTT+GGG | 0.412094 | 3.3:+89876737 | MS.gene073064:CDS |
| AGAAGGATCCTGAATTCAAA+TGG | 0.417598 | 3.3:+89873418 | MS.gene073064:CDS |
| TGCTCGGTTCAGCCCACTTG+TGG | 0.423538 | 3.3:+89885940 | MS.gene073064:intron |
| GAAACGATAGCATACAAAAT+CGG | 0.427986 | 3.3:-89875650 | None:intergenic |
| CAAGCGATTGGAGGAGAGAA+AGG | 0.433552 | 3.3:+89876972 | MS.gene073064:CDS |
| CCACATCAGGAAGCTATTGC+TGG | 0.436441 | 3.3:+89875556 | MS.gene073064:intron |
| AAGGTAGATGATAAGATTGC+TGG | 0.438733 | 3.3:+89875703 | MS.gene073064:CDS |
| CATATCATATTCAATGTTGT+TGG | 0.441654 | 3.3:-89886200 | None:intergenic |
| ATCTTGGAGAAAATTATATC+AGG | 0.443834 | 3.3:+89886261 | MS.gene073064:CDS |
| CAATGTTGTTTGCATTTCAA+AGG | 0.447840 | 3.3:+89875585 | MS.gene073064:CDS |
| GATAAGATTGCTGGAATTGA+AGG | 0.449199 | 3.3:+89875712 | MS.gene073064:CDS |
| GGTGAAACTGAACCGTTTAT+CGG | 0.450756 | 3.3:+89873552 | MS.gene073064:CDS |
| TTTAACTTCATCAGAAGTAC+AGG | 0.454276 | 3.3:+89881984 | MS.gene073064:CDS |
| GGCTTCTTCTCCGGAATGCA+AGG | 0.457959 | 3.3:-89885980 | None:intergenic |
| ATATCATATTCAATGTTGTT+GGG | 0.461156 | 3.3:-89886199 | None:intergenic |
| TCTTTCATTCTTTCCTCCCA+AGG | 0.462766 | 3.3:-89881913 | None:intergenic |
| CTTCAAAACGGTCTTATCAA+TGG | 0.467089 | 3.3:-89876695 | None:intergenic |
| TAAAATGTCGGCTTCTTCTC+CGG | 0.467803 | 3.3:-89885989 | None:intergenic |
| GAAGGATCCTGAATTCAAAT+GGG | 0.468451 | 3.3:+89873419 | MS.gene073064:CDS |
| GCTATCGTTTCTTTGATGTT+GGG | 0.469629 | 3.3:+89875662 | MS.gene073064:CDS |
| AATGCGTTGGTGGCAAAAGA+AGG | 0.480278 | 3.3:+89873451 | MS.gene073064:CDS |
| GTTGATTCTAAGCCATCATT+GGG | 0.482854 | 3.3:+89876454 | MS.gene073064:CDS |
| ATCAATCTTGGACTTCAAAA+CGG | 0.483446 | 3.3:-89876707 | None:intergenic |
| ATATCTTCGTCTGGTGGAGG+TGG | 0.489316 | 3.3:-89875619 | None:intergenic |
| GCTCGGTTCAGCCCACTTGT+GGG | 0.493488 | 3.3:+89885941 | MS.gene073064:intron |
| TCTCCGATCGACAAATCAAC+AGG | 0.493738 | 3.3:+89876761 | MS.gene073064:CDS |
| TCGACAAATCAACAGGCGAT+TGG | 0.493993 | 3.3:+89876768 | MS.gene073064:CDS |
| CTGGTGACAAGTTGGCCGAC+AGG | 0.500385 | 3.3:+89876941 | MS.gene073064:CDS |
| GCTTACAAATATCAATCCTC+TGG | 0.500628 | 3.3:+89873722 | MS.gene073064:CDS |
| TGAATATCTTCGTCTGGTGG+AGG | 0.503851 | 3.3:-89875622 | None:intergenic |
| TATCCAAAGAGAAAGAGAAT+GGG | 0.506655 | 3.3:+89876566 | MS.gene073064:CDS |
| CTTCCTTCACATCATCATCA+TGG | 0.511593 | 3.3:-89877062 | None:intergenic |
| TTTCTCTTTGGATAGAGGCA+AGG | 0.511946 | 3.3:-89876557 | None:intergenic |
| CTATCCAAAGAGAAAGAGAA+TGG | 0.515510 | 3.3:+89876565 | MS.gene073064:CDS |
| ACAACGTCAGTTAAACTCTC+TGG | 0.516055 | 3.3:+89876922 | MS.gene073064:CDS |
| AAGGACACTAGTAAATCAAA+TGG | 0.518195 | 3.3:+89876505 | MS.gene073064:CDS |
| GTTGTGTTTGCAATCGAAGT+TGG | 0.518383 | 3.3:-89886030 | None:intergenic |
| GCTGTTTCTTGATGTCAAAT+GGG | 0.525144 | 3.3:+89882690 | MS.gene073064:CDS |
| AAGCAAATGGTTTAAGCCAA+TGG | 0.526651 | 3.3:+89881717 | MS.gene073064:CDS |
| ATGAAAGATGCTTATGAGCA+AGG | 0.529715 | 3.3:+89881928 | MS.gene073064:CDS |
| ACAATGCAAACTAAACTCTC+TGG | 0.529970 | 3.3:+89877111 | MS.gene073064:CDS |
| TCTACAACCTCTCCAAACTT+GGG | 0.530962 | 3.3:+89877156 | MS.gene073064:CDS |
| ATAGGCGGACGTGATATTGT+TGG | 0.531731 | 3.3:+89876736 | MS.gene073064:CDS |
| TCGCTTGTTAATTTGCCTGT+CGG | 0.534542 | 3.3:-89876956 | None:intergenic |
| TATGTCGAAACATCCAACTA+TGG | 0.536534 | 3.3:+89873380 | None:intergenic |
| AATTTATATAGTCAAAAGCT+TGG | 0.539385 | 3.3:+89876295 | MS.gene073064:CDS |
| GCAAATTAACAAGCGATTGG+AGG | 0.543377 | 3.3:+89876963 | MS.gene073064:CDS |
| ATCTGTCATTAGAAAATTGG+AGG | 0.543865 | 3.3:+89882664 | MS.gene073064:CDS |
| GACAAATCAACAGGCGATTG+GGG | 0.544914 | 3.3:+89876770 | MS.gene073064:CDS |
| GGTTTAGATGAGAAACAAGT+TGG | 0.544944 | 3.3:+89876334 | MS.gene073064:CDS |
| TTATATAGTCAAAAGCTTGG+CGG | 0.546878 | 3.3:+89876298 | MS.gene073064:CDS |
| GGAAAACATAAATGCGTTGG+TGG | 0.547657 | 3.3:+89873441 | MS.gene073064:CDS |
| AATGGAAGGGACGTCGATGA+TGG | 0.549163 | 3.3:+89876859 | MS.gene073064:CDS |
| CAGGCAAATTAACAAGCGAT+TGG | 0.550451 | 3.3:+89876960 | MS.gene073064:CDS |
| TCGCCTGTTGATTTGTCGAT+CGG | 0.551582 | 3.3:-89876764 | None:intergenic |
| CTTCCAAAGCTTCCCACAAG+TGG | 0.552944 | 3.3:-89885953 | None:intergenic |
| ACTTCTGATGAAGTTAAAGA+AGG | 0.553964 | 3.3:-89881979 | None:intergenic |
| CAAGTTGGCGTGAAAGTCAC+GGG | 0.555003 | 3.3:+89876349 | MS.gene073064:CDS |
| TGAAAGATGCTTATGAGCAA+GGG | 0.557385 | 3.3:+89881929 | MS.gene073064:CDS |
| GATGACAGGATAGAAGCAAA+TGG | 0.557406 | 3.3:+89881704 | MS.gene073064:intron |
| CTATCACATTCCTCTAGCGA+TGG | 0.561904 | 3.3:+89876631 | MS.gene073064:CDS |
| AGTACCGTACTTATCCTTCT+CGG | 0.562823 | 3.3:-89876806 | None:intergenic |
| ACAAGTTGGCGTGAAAGTCA+CGG | 0.571553 | 3.3:+89876348 | MS.gene073064:CDS |
| TGGGGAAAACATAAATGCGT+TGG | 0.572176 | 3.3:+89873438 | MS.gene073064:CDS |
| TGTCATTAGAAAATTGGAGG+AGG | 0.572214 | 3.3:+89882667 | MS.gene073064:CDS |
| TACTAGTGTCCTTTAAACCA+AGG | 0.577865 | 3.3:-89876495 | None:intergenic |
| CAAATCATATGCAAAATCAA+AGG | 0.578598 | 3.3:+89877037 | MS.gene073064:CDS |
| TAGAGGCAAGGTCTTGTCAC+GGG | 0.584725 | 3.3:-89876545 | None:intergenic |
| GGAGGGCAACACCTCCGAGA+AGG | 0.585855 | 3.3:+89876792 | MS.gene073064:CDS |
| CTTGTGCCCCAAGTTTGGAG+AGG | 0.588451 | 3.3:-89877163 | None:intergenic |
| TACGAATCGTTTACTTACGA+TGG | 0.592872 | 3.3:+89873486 | MS.gene073064:CDS |
| TAAACTCTCTGGTGACAAGT+TGG | 0.593425 | 3.3:+89876933 | MS.gene073064:CDS |
| ATTGCAAACACAACGTGAGA+TGG | 0.595601 | 3.3:+89886039 | MS.gene073064:CDS |
| TGCAGTGTCTAACCAGAATG+AGG | 0.598170 | 3.3:-89882503 | None:intergenic |
| TTCCAAAGCTTCCCACAAGT+GGG | 0.605629 | 3.3:-89885952 | None:intergenic |
| GCTTCTTCTCCGGAATGCAA+GGG | 0.607648 | 3.3:-89885979 | None:intergenic |
| GTCATTAGAAAATTGGAGGA+GGG | 0.609832 | 3.3:+89882668 | MS.gene073064:CDS |
| GTAGGAATATCTAAAATTGG+AGG | 0.612381 | 3.3:+89876664 | MS.gene073064:CDS |
| GAACCATGATGATGATGTGA+AGG | 0.612554 | 3.3:+89877059 | MS.gene073064:CDS |
| GTCCTTTAAACCAAGGCTAG+AGG | 0.612770 | 3.3:-89876488 | None:intergenic |
| AAGAAATTGAAAATCTCACA+TGG | 0.613266 | 3.3:-89873642 | None:intergenic |
| ATGCGTTGGTGGCAAAAGAA+GGG | 0.614164 | 3.3:+89873452 | MS.gene073064:CDS |
| GGTAGAAGATGCAAACGAGA+AGG | 0.616528 | 3.3:+89873401 | MS.gene073064:CDS |
| ACATGATGACCATAAAATGT+CGG | 0.618244 | 3.3:-89886001 | None:intergenic |
| CTACAACCTCTCCAAACTTG+GGG | 0.621243 | 3.3:+89877157 | MS.gene073064:CDS |
| CACGGGAAGTAATGAAGCGG+TGG | 0.622523 | 3.3:+89876366 | MS.gene073064:CDS |
| CATTTCCAAACCATCGCTAG+AGG | 0.622890 | 3.3:-89876641 | None:intergenic |
| CGTCGATGATGGTGACGTGA+AGG | 0.626542 | 3.3:+89876870 | MS.gene073064:CDS |
| ATGCAAACTAAACTCTCTGG+TGG | 0.635003 | 3.3:+89877114 | MS.gene073064:CDS |
| GACACTAGTAAATCAAATGG+TGG | 0.642365 | 3.3:+89876508 | MS.gene073064:CDS |
| CAAGCAAGATTACAGTGTAA+CGG | 0.642416 | 3.3:+89877182 | MS.gene073064:CDS |
| GTTTCTTGATGTCAAATGGG+CGG | 0.643178 | 3.3:+89882693 | MS.gene073064:CDS |
| ATCCAAAGAGAAAGAGAATG+GGG | 0.645638 | 3.3:+89876567 | MS.gene073064:CDS |
| ATAGAGGCAAGGTCTTGTCA+CGG | 0.649576 | 3.3:-89876546 | None:intergenic |
| AGGCGGACGTGATATTGTTG+GGG | 0.650648 | 3.3:+89876738 | MS.gene073064:CDS |
| ACCTCCGAGAAGGATAAGTA+CGG | 0.662383 | 3.3:+89876802 | MS.gene073064:CDS |
| ACAAATCAACAGGCGATTGG+GGG | 0.666789 | 3.3:+89876771 | MS.gene073064:CDS |
| AAGGATCCTGAATTCAAATG+GGG | 0.679226 | 3.3:+89873420 | MS.gene073064:CDS |
| AATATGATATGGCTGTAGAG+TGG | 0.686649 | 3.3:+89886212 | MS.gene073064:CDS |
| AGCGATGGTTTGGAAATGGT+AGG | 0.687208 | 3.3:+89876646 | MS.gene073064:CDS |
| GCAGCATAAAATATTGGACA+AGG | 0.689877 | 3.3:+89875684 | MS.gene073064:CDS |
| AAGATTGATTCAGAAATAGG+CGG | 0.695694 | 3.3:+89876721 | MS.gene073064:CDS |
| GTGTTTACTACAAGAAAGAG+CGG | 0.696169 | 3.3:+89886234 | MS.gene073064:CDS |
| ACCGTACTTATCCTTCTCGG+AGG | 0.709621 | 3.3:-89876803 | None:intergenic |
| AGAATGAGGACTAGAATATG+CGG | 0.713953 | 3.3:-89882489 | None:intergenic |
| AGTCACGGGAAGTAATGAAG+CGG | 0.714780 | 3.3:+89876363 | MS.gene073064:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89873381 | 89886282 | 89873381 | ID=MS.gene073064 |
| chr3.3 | mRNA | 89873381 | 89886282 | 89873381 | ID=MS.gene073064.t1;Parent=MS.gene073064 |
| chr3.3 | exon | 89873381 | 89873743 | 89873381 | ID=MS.gene073064.t1.exon1;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89873381 | 89873743 | 89873381 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89875565 | 89875733 | 89875565 | ID=MS.gene073064.t1.exon2;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89875565 | 89875733 | 89875565 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89876278 | 89877227 | 89876278 | ID=MS.gene073064.t1.exon3;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89876278 | 89877227 | 89876278 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89881712 | 89881738 | 89881712 | ID=MS.gene073064.t1.exon4;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89881712 | 89881738 | 89881712 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89881913 | 89882005 | 89881913 | ID=MS.gene073064.t1.exon5;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89881913 | 89882005 | 89881913 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89882434 | 89882512 | 89882434 | ID=MS.gene073064.t1.exon6;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89882434 | 89882512 | 89882434 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89882624 | 89882714 | 89882624 | ID=MS.gene073064.t1.exon7;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89882624 | 89882714 | 89882624 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89885952 | 89886060 | 89885952 | ID=MS.gene073064.t1.exon8;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89885952 | 89886060 | 89885952 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| chr3.3 | exon | 89886166 | 89886282 | 89886166 | ID=MS.gene073064.t1.exon9;Parent=MS.gene073064.t1 |
| chr3.3 | CDS | 89886166 | 89886282 | 89886166 | ID=cds.MS.gene073064.t1;Parent=MS.gene073064.t1 |
| Gene Sequence |
| Protein sequence |
