AlfalfaGEDB | MS.gene08041

M. sativa cultivar XinJiangDaYe / MS.gene08041

KEGG: -
GO: GO:0003674 GO:0003755 GO:0003824 GO:0016853 GO:0016859 GO:0140096
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08041.t1	XP_003600399.2	98.9	95	1	0	10	104	120	214	3.50E-45	190.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08041.t1	Q944B0	77.9	86	19	0	10	95	122	207	7.7e-33	141.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08041.t1	G7IXS8	98.9	95	1	0	10	104	120	214	2.5e-45	190.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049284	MS.gene08041	0.823964	1.04E-53	-1.69E-46
MS.gene049661	MS.gene08041	0.804692	1.91E-49	-1.69E-46
MS.gene049662	MS.gene08041	0.818883	1.55E-52	-1.69E-46
MS.gene049758	MS.gene08041	0.834025	3.80E-56	-1.69E-46
MS.gene049910	MS.gene08041	0.805507	1.29E-49	-1.69E-46
MS.gene050076	MS.gene08041	0.830149	3.45E-55	-1.69E-46
MS.gene050301	MS.gene08041	0.842656	2.26E-58	-1.69E-46
MS.gene050397	MS.gene08041	0.813031	3.14E-51	-1.69E-46
MS.gene050404	MS.gene08041	0.830144	3.47E-55	-1.69E-46
MS.gene050406	MS.gene08041	0.806971	6.35E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08041.t1	MTR_3g060750	98.947	95	1	0	10	104	120	214	8.79e-64	192

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08041.t1	AT4G26555	77.907	86	19	10	95	76	161	1.05e-43	140
MS.gene08041.t1	AT4G26555	77.907	86	19	10	95	122	207	1.12e-43	141
MS.gene08041.t1	AT4G26555	66.667	39	13	10	48	122	160	7.79e-11	56.2

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Find 27 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTCCTCTGGATGAGGACC+AGG	0.515288	3.1:+85893411	MS.gene08041:CDS
AGACTAACCTCTTCAGGTAT+TGG	0.406636	3.1:-85894346	None:intergenic
AGTACAGTAGACCAATTCAA+TGG	0.553972	3.1:+85893370	MS.gene08041:CDS
AGTGCTAGACTAACCTCTTC+AGG	0.368074	3.1:-85894352	None:intergenic
AGTTGAACTTCAAATACCAA+AGG	0.649057	3.1:-85894638	None:intergenic
CAATAACTGTCCTAATGTTT+TGG	0.273176	3.1:+85893326	None:intergenic
CTAACCTGGTCCTCATCCAG+AGG	0.693869	3.1:-85893415	None:intergenic
CTTGAAGCCAATACCTGAAG+AGG	0.536259	3.1:+85894339	MS.gene08041:CDS
GAGAAAGAAGGCTGCGTCGA+GGG	0.529313	3.1:-85894604	None:intergenic
GATGATACTGGGGTTAAAGC+AGG	0.562802	3.1:+85894081	MS.gene08041:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTATAGCAATGTCTATGA+AGG	-	chr3.1:85893767-85893786	None:intergenic	30.0%
ACTTGGATACAATCATACAA+AGG	+	chr3.1:85894372-85894391	MS.gene08041:intron	30.0%
AGTTGAACTTCAAATACCAA+AGG	-	chr3.1:85894641-85894660	None:intergenic	30.0%
GATTACTTTCTCCATTGAAT+TGG	-	chr3.1:85893384-85893403	None:intergenic	30.0%
GCATATCGCAATTTATAAGT+GGG	+	chr3.1:85893649-85893668	MS.gene08041:intron	30.0%
TGCATATCGCAATTTATAAG+TGG	+	chr3.1:85893648-85893667	MS.gene08041:intron	30.0%
AAACACATTTCAGAGTTCTC+TGG	-	chr3.1:85893465-85893484	None:intergenic	35.0%
AAGCATCTAATTGTAGTCAC+TGG	+	chr3.1:85893725-85893744	MS.gene08041:intron	35.0%
AATTGCGGTTACACTACATT+GGG	+	chr3.1:85893599-85893618	MS.gene08041:intron	35.0%
ACCAAATTATACAGGACTAG+TGG	-	chr3.1:85894196-85894215	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	85893340	85894703	85893340	ID=MS.gene08041
chr3.1	mRNA	85893340	85894703	85893340	ID=MS.gene08041.t1;Parent=MS.gene08041
chr3.1	exon	85893340	85893432	85893340	ID=MS.gene08041.t1.exon1;Parent=MS.gene08041.t1
chr3.1	CDS	85893340	85893432	85893340	ID=cds.MS.gene08041.t1;Parent=MS.gene08041.t1
chr3.1	exon	85894082	85894127	85894082	ID=MS.gene08041.t1.exon2;Parent=MS.gene08041.t1
chr3.1	CDS	85894082	85894127	85894082	ID=cds.MS.gene08041.t1;Parent=MS.gene08041.t1
chr3.1	exon	85894290	85894360	85894290	ID=MS.gene08041.t1.exon3;Parent=MS.gene08041.t1
chr3.1	CDS	85894290	85894360	85894290	ID=cds.MS.gene08041.t1;Parent=MS.gene08041.t1
chr3.1	exon	85894599	85894703	85894599	ID=MS.gene08041.t1.exon4;Parent=MS.gene08041.t1
chr3.1	CDS	85894599	85894703	85894599	ID=cds.MS.gene08041.t1;Parent=MS.gene08041.t1

Gene Sequence

>MS.gene08041

ATGTTTTGGTTTCATACTCTAATTCACTATAGTACAGTAGACCAATTCAATGGAGAAAGTAATCCTGTTATACTTCCTCTGGATGAGGACCAGGTTAGTTTATTTCTTTCAACTTGTGGGATCCAGAGAACTCTGAAATGTGTTTACTATTTCTTTCTGATGATGTTTCTTATATATGGTAATATTGTTGACATAGATATAGTTAAATTTTTTTATTAAGTAATTGGAAAATGATATTATAAACACGGTTCTAAATTGCAATTGCGGTTACACTACATTGGGGTTAGATGCGGCCTTGCGGTTGTTGTTGCATATCGCAATTTATAAGTGGGTTGATTATTGTAACATGGTTATAGTAACAGTTATTATCTTGTCAGCATGTAGAAAGCATCTAATTGTAGTCACTGGCCTTATTAGATAGATTCCTTCATAGACATTGCTATACTTTTCAGGTTATATTTAGCTGTATAATTCTCAGATTTGCTATTACAAATCTGGAATCTAATTCTCAATTGAACCATTGTTCTTTTCTTTCTTATATTCTGCAAATTTGAAGGTTCAATGTGAATTTGTATGCCTTTGCTAGATTTGAAACAATATTCAATTTAAATTCACCACAAAATTTGACTATTAATCATGCCTAGTATTCTTCAGTCGCCCTTTATATTCTTCAACTCAAGTTACCATAAACTGAGGAGATAATCTGCTTTCTATATTTTTTATTTTTTTTTGTTTAAAACAGATGATACTGGGGTTAAAGCAGGTCTTGACTGGCATGAGAGTTGGTGGTATGTTCTAAGATATTGTCATTATTTCCTGACAAATCAGTATTTTGACAATCTGGTCTACATATCCACTAGTCCTGTATAATTTGGTCATGACTGTTTTTTTTTGTGTGTGGAAAATGTATCTTTTGATGTCATTGTGGTCACTCTTGGCTTCACTTGTAGGAAAGAGAAGAGCATTGATTCCACCTTCTGTAGGATATGTAGACGAGAACTTGAAGCCAATACCTGAAGAGGTTAGTCTAGCACTTGGATACAATCATACAAAGGTTATCCGTCAATTTTTTTTTAAACGTAAATGCTAATTATTAAAATGTTATGTTAGTAGTTGGAGTTTGAATCATGAACTTTACGCTCAACCTTGTTTGGATGTTTAAATTAACCACTTCAGCTATGTATTGATGACTTTTTTTTTGGACAGATTATCAATTCGACTATAGTTGATATTGTTAACATTTTTTGTGTTTAATGCAGTTTGGCCCTCGACGCAGCCTTCTTTCTCATGCTCAAGAGCCTTTGGTATTTGAAGTTCAACTCTTGAAAATTCTGAGTGTTCCACAACAATCTGAATTTAATTAG

Protein sequence

>MS.gene08041.t1

MFWFHTLIHYSTVDQFNGESNPVILPLDEDQMILGLKQVLTGMRVGGKRRALIPPSVGYVDENLKPIPEEFGPRRSLLSHAQEPLVFEVQLLKILSVPQQSEFN