Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08584.t1 | XP_003606497.2 | 96.4 | 169 | 6 | 0 | 1 | 169 | 51 | 219 | 1.70E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08584.t1 | Q2KIP8 | 39.8 | 171 | 99 | 2 | 1 | 168 | 83 | 252 | 1.1e-25 | 117.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08584.t1 | G7JRH2 | 96.4 | 169 | 6 | 0 | 1 | 169 | 51 | 219 | 1.2e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene08584 | 0.840193 | 1.01E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene08584 | 0.809275 | 2.05E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene08584 | 0.832842 | 7.51E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene08584 | 0.815197 | 1.05E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene08584 | 0.807954 | 3.93E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene08584 | 0.821686 | 3.54E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene08584 | 0.825692 | 4.08E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene08584 | 0.801754 | 7.76E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene08584 | 0.820349 | 7.19E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene08584 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene08584 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene08584 | 0.834455 | 2.97E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene08584 | 0.831246 | 1.86E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene08584 | 0.842651 | 2.27E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene08584 | 0.803744 | 3.01E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene08584 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene050950 | MS.gene08584 | 0.816521 | 5.30E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene08584 | 0.840731 | 7.29E-58 | -1.69E-46 |
| MS.gene052482 | MS.gene08584 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene052486 | MS.gene08584 | 0.80179 | 7.63E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene08584 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene08584 | 0.845313 | 4.39E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene08584 | 0.808599 | 2.86E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene08584 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene08584 | 0.816895 | 4.37E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene08584 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene08584 | 0.828569 | 8.36E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene08584 | 0.829641 | 4.60E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene08584 | 0.810652 | 1.04E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene08584 | 0.805878 | 1.08E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene08584 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene08584 | 0.814588 | 1.43E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene08584 | 0.811629 | 6.36E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene08584 | 0.816813 | 4.56E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene08584 | 0.845738 | 3.37E-59 | -1.69E-46 |
| MS.gene057658 | MS.gene08584 | 0.841398 | 4.87E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene08584 | 0.854074 | 1.57E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene08584 | 0.819256 | 1.28E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene08584 | 0.829914 | 3.94E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene08584 | 0.803137 | 4.02E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene08584 | 0.83568 | 1.46E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene08584 | 0.846305 | 2.36E-59 | -1.69E-46 |
| MS.gene059181 | MS.gene08584 | 0.829553 | 4.83E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene08584 | 0.849972 | 2.29E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene08584 | 0.817126 | 3.88E-52 | -1.69E-46 |
| MS.gene059756 | MS.gene08584 | 0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene08584 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene08584 | 0.806199 | 9.24E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene08584 | 0.819473 | 1.14E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene08584 | 0.824384 | 8.31E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene08584 | 0.833978 | 3.91E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene08584 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene08584 | 0.817897 | 2.60E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAATCATAATAACTAAA+TGG | 0.223354 | 4.3:-41511976 | None:intergenic |
| ATATTCTTCTCCTTTATAAT+TGG | 0.246163 | 4.3:-41511928 | None:intergenic |
| TCTTCAATGTGCTGCATTCT+TGG | 0.260285 | 4.3:+41510089 | MS.gene08584:CDS |
| ACTTTGTCCTTGCCATTGTC+AGG | 0.275430 | 4.3:+41510287 | MS.gene08584:CDS |
| GCTTGGGAAATTGTCCTTCT+TGG | 0.285396 | 4.3:+41511553 | MS.gene08584:CDS |
| TATCCTGTGGGAGTGTTTCC+TGG | 0.286736 | 4.3:+41511732 | MS.gene08584:CDS |
| GGAATGGATAAACTATAATT+AGG | 0.324528 | 4.3:-41512257 | None:intergenic |
| CTTCTTGGATGACCTATATC+AGG | 0.387626 | 4.3:+41511568 | MS.gene08584:CDS |
| CGTTGCTTCCTTTGATGCAA+TGG | 0.387638 | 4.3:+41510251 | MS.gene08584:CDS |
| GTTGCTTCCTTTGATGCAAT+GGG | 0.387839 | 4.3:+41510252 | MS.gene08584:CDS |
| GCATTATGCTTTCAGTTGCT+TGG | 0.401661 | 4.3:+41511536 | MS.gene08584:CDS |
| CATTATGCTTTCAGTTGCTT+GGG | 0.402222 | 4.3:+41511537 | MS.gene08584:CDS |
| CCAGGCGCTTCCAATTATAA+AGG | 0.426455 | 4.3:+41511918 | MS.gene08584:CDS |
| TAGTTATTATGATTTCCTTA+AGG | 0.432805 | 4.3:+41511981 | MS.gene08584:CDS |
| GGAAATCATAATAACTAAAT+GGG | 0.435335 | 4.3:-41511975 | None:intergenic |
| CTTTGTCCTTGCCATTGTCA+GGG | 0.439962 | 4.3:+41510288 | MS.gene08584:CDS |
| CTTCCTCCCCATTGCATCAA+AGG | 0.457528 | 4.3:-41510259 | None:intergenic |
| TTATAGTTTATCCATTCCTC+TGG | 0.461684 | 4.3:+41512262 | MS.gene08584:CDS |
| CTTTGATGCAATGGGGAGGA+AGG | 0.495138 | 4.3:+41510260 | MS.gene08584:CDS |
| CCTTTATAATTGGAAGCGCC+TGG | 0.502979 | 4.3:-41511918 | None:intergenic |
| GTTTATTGTGATTTATCCTG+TGG | 0.508886 | 4.3:+41511719 | MS.gene08584:CDS |
| CGTGACAAGAAAAGAGCATA+AGG | 0.514361 | 4.3:+41512339 | MS.gene08584:CDS |
| GAAGTTATACACGGTGCCAT+TGG | 0.515549 | 4.3:+41510111 | MS.gene08584:CDS |
| TGCAGTATGGTTGATGTACC+AGG | 0.524168 | 4.3:+41511900 | MS.gene08584:intron |
| GCCGCTGCTTGAACAAATGC+AGG | 0.533526 | 4.3:-41512296 | None:intergenic |
| ACTAAATGGGAGACTTGAAA+AGG | 0.540233 | 4.3:-41511962 | None:intergenic |
| CTGATATAGGTCATCCAAGA+AGG | 0.541355 | 4.3:-41511567 | None:intergenic |
| CATATGAACTCACTTTCTCC+AGG | 0.542825 | 4.3:-41511750 | None:intergenic |
| TTTGTCCTTGCCATTGTCAG+GGG | 0.543762 | 4.3:+41510289 | MS.gene08584:CDS |
| CATTGTCAGGGGAATTCATG+AGG | 0.560461 | 4.3:+41510300 | MS.gene08584:CDS |
| AAAGGAAGCAACGCTCCGCT+CGG | 0.563622 | 4.3:-41510241 | None:intergenic |
| TTTATTGTGATTTATCCTGT+GGG | 0.570256 | 4.3:+41511720 | MS.gene08584:CDS |
| ACCTGCATTTGTTCAAGCAG+CGG | 0.572458 | 4.3:+41512295 | MS.gene08584:CDS |
| TATAGTTTGAACCAGAGGAA+TGG | 0.586252 | 4.3:-41512273 | None:intergenic |
| CTCATGAATTCCCCTGACAA+TGG | 0.606474 | 4.3:-41510299 | None:intergenic |
| TCTCCAGGAAACACTCCCAC+AGG | 0.614332 | 4.3:-41511735 | None:intergenic |
| GCAGGTATAGTTTGAACCAG+AGG | 0.617176 | 4.3:-41512278 | None:intergenic |
| CTTCCTTTGATGCAATGGGG+AGG | 0.617578 | 4.3:+41510256 | MS.gene08584:CDS |
| GAATTCCCCTGACAATGGCA+AGG | 0.640571 | 4.3:-41510294 | None:intergenic |
| TTGCTTCCTTTGATGCAATG+GGG | 0.657708 | 4.3:+41510253 | MS.gene08584:CDS |
| GCATTCTTGGAAGTTATACA+CGG | 0.672092 | 4.3:+41510102 | MS.gene08584:CDS |
| TCTTGCGTGGAGCATAGGCG+AGG | 0.678820 | 4.3:+41510584 | MS.gene08584:CDS |
| ATTTCAGGACTGGTTCCGAG+CGG | 0.718139 | 4.3:+41510226 | MS.gene08584:intron |
| AGGATAAATCACAATAAACG+CGG | 0.753232 | 4.3:-41511715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTTTTTTTAGAGT+TGG | + | chr4.3:41510863-41510882 | MS.gene08584:intron | 15.0% |
| !!! | TATTTGTTTTTTTTAGAGTT+GGG | + | chr4.3:41510864-41510883 | MS.gene08584:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | - | chr4.3:41511309-41511328 | None:intergenic | 15.0% |
| !!! | TTCTTTATCTTTTGATTATT+AGG | + | chr4.3:41511688-41511707 | MS.gene08584:intron | 15.0% |
| !! | AGCAAAAAAGAAAAAGAAAA+AGG | - | chr4.3:41511233-41511252 | None:intergenic | 20.0% |
| !! | AGGAAATCATAATAACTAAA+TGG | - | chr4.3:41511979-41511998 | None:intergenic | 20.0% |
| !! | ATATTCTTCTCCTTTATAAT+TGG | - | chr4.3:41511931-41511950 | None:intergenic | 20.0% |
| !! | GGAAATCATAATAACTAAAT+GGG | - | chr4.3:41511978-41511997 | None:intergenic | 20.0% |
| !! | TAGTTATTATGATTTCCTTA+AGG | + | chr4.3:41511981-41512000 | MS.gene08584:CDS | 20.0% |
| !! | TATGACTTATATTCAGAAAT+TGG | + | chr4.3:41510664-41510683 | MS.gene08584:intron | 20.0% |
| !! | TCAAACATAATTGAGTATAA+AGG | - | chr4.3:41512136-41512155 | None:intergenic | 20.0% |
| !! | TGTAATAATCTACAATTCAT+AGG | - | chr4.3:41512209-41512228 | None:intergenic | 20.0% |
| !!! | AAAACAACATTTTATATCAC+AGG | - | chr4.3:41512110-41512129 | None:intergenic | 20.0% |
| !!! | AAACAACATTTTATATCACA+GGG | - | chr4.3:41512109-41512128 | None:intergenic | 20.0% |
| !!! | TAACACAATTTTTATGGATT+TGG | - | chr4.3:41511446-41511465 | None:intergenic | 20.0% |
| ! | AAACAAAACTTAACGATAAG+AGG | - | chr4.3:41511786-41511805 | None:intergenic | 25.0% |
| ! | AAATATAAAAAAACGCAGAC+AGG | - | chr4.3:41510849-41510868 | None:intergenic | 25.0% |
| ! | AACAAAACTTAACGATAAGA+GGG | - | chr4.3:41511785-41511804 | None:intergenic | 25.0% |
| ! | ACTTATATTCAGAAATTGGT+GGG | + | chr4.3:41510668-41510687 | MS.gene08584:intron | 25.0% |
| ! | ATTCAAAATTACTATCGCTA+TGG | - | chr4.3:41510411-41510430 | None:intergenic | 25.0% |
| ! | CAAATCATGAAATGAATTTC+AGG | + | chr4.3:41510211-41510230 | MS.gene08584:intron | 25.0% |
| ! | CCATAAAAATTGTGTTATAG+AGG | + | chr4.3:41511449-41511468 | MS.gene08584:intron | 25.0% |
| ! | GCATATAAAATGTTACCTTA+AGG | - | chr4.3:41511999-41512018 | None:intergenic | 25.0% |
| ! | GGAATGGATAAACTATAATT+AGG | - | chr4.3:41512260-41512279 | None:intergenic | 25.0% |
| ! | TAAAGCATATAACAGTTAGA+AGG | - | chr4.3:41510166-41510185 | None:intergenic | 25.0% |
| ! | TTGAATCCAAAATACTTATC+TGG | + | chr4.3:41510425-41510444 | MS.gene08584:intron | 25.0% |
| ! | TTTATTGTGATTTATCCTGT+GGG | + | chr4.3:41511720-41511739 | MS.gene08584:CDS | 25.0% |
| !! | CAATTTATGATAAGCATTGT+TGG | + | chr4.3:41510962-41510981 | MS.gene08584:intron | 25.0% |
| !! | CCTCTATAACACAATTTTTA+TGG | - | chr4.3:41511452-41511471 | None:intergenic | 25.0% |
| !! | TTATACCTAACTCATTTTCA+TGG | + | chr4.3:41511403-41511422 | MS.gene08584:intron | 25.0% |
| !!! | TTGATTTAGTTCTGATTTGT+TGG | + | chr4.3:41512152-41512171 | MS.gene08584:intron | 25.0% |
| AACAGTTTAAACAGAAAGCA+AGG | - | chr4.3:41510919-41510938 | None:intergenic | 30.0% | |
| AGGATAAATCACAATAAACG+CGG | - | chr4.3:41511718-41511737 | None:intergenic | 30.0% | |
| AGTTAGGTATAAATGAAGCA+CGG | - | chr4.3:41511395-41511414 | None:intergenic | 30.0% | |
| ATCCAAAATACTTATCTGGT+AGG | + | chr4.3:41510429-41510448 | MS.gene08584:intron | 30.0% | |
| ATTGCACATAGAATTTCGTT+CGG | + | chr4.3:41512080-41512099 | MS.gene08584:intron | 30.0% | |
| CGCAAGAAAAGTGATAAAAA+CGG | - | chr4.3:41510571-41510590 | None:intergenic | 30.0% | |
| GACTTATATTCAGAAATTGG+TGG | + | chr4.3:41510667-41510686 | MS.gene08584:intron | 30.0% | |
| GATAGAAAAATGCCTGATAT+AGG | - | chr4.3:41511583-41511602 | None:intergenic | 30.0% | |
| GCAAGAAAAGTGATAAAAAC+GGG | - | chr4.3:41510570-41510589 | None:intergenic | 30.0% | |
| GTATACCATGAAAATGAGTT+AGG | - | chr4.3:41511411-41511430 | None:intergenic | 30.0% | |
| GTTTATTGTGATTTATCCTG+TGG | + | chr4.3:41511719-41511738 | MS.gene08584:CDS | 30.0% | |
| TATATCTCTACTCTAACAAC+TGG | + | chr4.3:41510741-41510760 | MS.gene08584:intron | 30.0% | |
| TCTCAAATTATTAACGGTGT+CGG | - | chr4.3:41511303-41511322 | None:intergenic | 30.0% | |
| TTAGGTACTCATATTCATCA+AGG | + | chr4.3:41510987-41511006 | MS.gene08584:intron | 30.0% | |
| TTATAGTTTATCCATTCCTC+TGG | + | chr4.3:41512262-41512281 | MS.gene08584:CDS | 30.0% | |
| TTCTATATTCTCCATACTGA+TGG | + | chr4.3:41511609-41511628 | MS.gene08584:intron | 30.0% | |
| ! | ACCTGACATTCTCTAAAAAA+AGG | - | chr4.3:41511185-41511204 | None:intergenic | 30.0% |
| ! | ATCCTACCAGATAAGTATTT+TGG | - | chr4.3:41510434-41510453 | None:intergenic | 30.0% |
| ! | ATTCTCTAAAAAAAGGGGAA+GGG | - | chr4.3:41511178-41511197 | None:intergenic | 30.0% |
| ! | CCTGACATTCTCTAAAAAAA+GGG | - | chr4.3:41511184-41511203 | None:intergenic | 30.0% |
| ! | CTGACATTCTCTAAAAAAAG+GGG | - | chr4.3:41511183-41511202 | None:intergenic | 30.0% |
| ! | GATGATTTTGCTTCAATCTT+TGG | + | chr4.3:41511491-41511510 | MS.gene08584:intron | 30.0% |
| ! | TATATGCAACTGATTAGTCA+TGG | + | chr4.3:41512012-41512031 | MS.gene08584:intron | 30.0% |
| !! | TACTTTTTATTCGATCGAAC+TGG | + | chr4.3:41510616-41510635 | MS.gene08584:intron | 30.0% |
| !! | TTTTTATCACTTTTCTTGCG+TGG | + | chr4.3:41510571-41510590 | MS.gene08584:CDS | 30.0% |
| ACTAAATGGGAGACTTGAAA+AGG | - | chr4.3:41511965-41511984 | None:intergenic | 35.0% | |
| AGAAAAGTGATAAAAACGGG+AGG | - | chr4.3:41510567-41510586 | None:intergenic | 35.0% | |
| CATGAAATGAATTTCAGGAC+TGG | + | chr4.3:41510216-41510235 | MS.gene08584:intron | 35.0% | |
| CATTATGCTTTCAGTTGCTT+GGG | + | chr4.3:41511537-41511556 | MS.gene08584:CDS | 35.0% | |
| GCATTCTTGGAAGTTATACA+CGG | + | chr4.3:41510102-41510121 | MS.gene08584:CDS | 35.0% | |
| TATAGTTTGAACCAGAGGAA+TGG | - | chr4.3:41512276-41512295 | None:intergenic | 35.0% | |
| TGCTTATACCCTATGAAACA+CGG | + | chr4.3:41511249-41511268 | MS.gene08584:intron | 35.0% | |
| TTAAACAGAAAGCAAGGTCA+AGG | - | chr4.3:41510913-41510932 | None:intergenic | 35.0% | |
| TTAGTCGATACAATGCAGTA+TGG | + | chr4.3:41511887-41511906 | MS.gene08584:intron | 35.0% | |
| TTCTTCTATAACCTCACTCT+TGG | + | chr4.3:41512045-41512064 | MS.gene08584:intron | 35.0% | |
| ! | CATTCTCTAAAAAAAGGGGA+AGG | - | chr4.3:41511179-41511198 | None:intergenic | 35.0% |
| ! | TGATAAGCATTGTTGGTGTT+AGG | + | chr4.3:41510969-41510988 | MS.gene08584:intron | 35.0% |
| ! | TTCTCTAAAAAAAGGGGAAG+GGG | - | chr4.3:41511177-41511196 | None:intergenic | 35.0% |
| ! | TTGATGCATCTTGATGACAT+AGG | + | chr4.3:41510338-41510357 | MS.gene08584:intron | 35.0% |
| !!! | CCCTTTTTTTAGAGAATGTC+AGG | + | chr4.3:41511181-41511200 | MS.gene08584:intron | 35.0% |
| ACCTCATTTCTCCATCAGTA+TGG | - | chr4.3:41511623-41511642 | None:intergenic | 40.0% | |
| AGGTGCATATAAGTCACAAC+AGG | - | chr4.3:41512189-41512208 | None:intergenic | 40.0% | |
| ATGCTTCATTTCTCTCGATC+AGG | + | chr4.3:41512233-41512252 | MS.gene08584:intron | 40.0% | |
| CATATGAACTCACTTTCTCC+AGG | - | chr4.3:41511753-41511772 | None:intergenic | 40.0% | |
| CTGATATAGGTCATCCAAGA+AGG | - | chr4.3:41511570-41511589 | None:intergenic | 40.0% | |
| CTTCTTGGATGACCTATATC+AGG | + | chr4.3:41511568-41511587 | MS.gene08584:CDS | 40.0% | |
| GAAACACCTGAGTTAGAGAT+GGG | - | chr4.3:41510514-41510533 | None:intergenic | 40.0% | |
| GACAGTGTAAAACCTACCAA+TGG | - | chr4.3:41510130-41510149 | None:intergenic | 40.0% | |
| GAGATGGGATCGAATTACAT+CGG | - | chr4.3:41510499-41510518 | None:intergenic | 40.0% | |
| GCATTATGCTTTCAGTTGCT+TGG | + | chr4.3:41511536-41511555 | MS.gene08584:CDS | 40.0% | |
| GGAATACAAACGATTGATCG+TGG | - | chr4.3:41510828-41510847 | None:intergenic | 40.0% | |
| GTTCGTATCCGTGTTTCATA+GGG | - | chr4.3:41511260-41511279 | None:intergenic | 40.0% | |
| GTTGCTTCCTTTGATGCAAT+GGG | + | chr4.3:41510252-41510271 | MS.gene08584:CDS | 40.0% | |
| TCCATACTGATGGAGAAATG+AGG | + | chr4.3:41511619-41511638 | MS.gene08584:intron | 40.0% | |
| TCTTCAATGTGCTGCATTCT+TGG | + | chr4.3:41510089-41510108 | MS.gene08584:CDS | 40.0% | |
| TGAGTCAATTTCCAAGAGTG+AGG | - | chr4.3:41512059-41512078 | None:intergenic | 40.0% | |
| TGTTCGTATCCGTGTTTCAT+AGG | - | chr4.3:41511261-41511280 | None:intergenic | 40.0% | |
| TTGCTTCCTTTGATGCAATG+GGG | + | chr4.3:41510253-41510272 | MS.gene08584:CDS | 40.0% | |
| AAAAGGGGAAGGGGTTGTAA+AGG | - | chr4.3:41511168-41511187 | None:intergenic | 45.0% | |
| AATGAAGCACGGACACTTCT+TGG | - | chr4.3:41511384-41511403 | None:intergenic | 45.0% | |
| ACCTGCATTTGTTCAAGCAG+CGG | + | chr4.3:41512295-41512314 | MS.gene08584:CDS | 45.0% | |
| ACTTTGTCCTTGCCATTGTC+AGG | + | chr4.3:41510287-41510306 | MS.gene08584:CDS | 45.0% | |
| ATGGGATCGAATTACATCGG+AGG | - | chr4.3:41510496-41510515 | None:intergenic | 45.0% | |
| CACTATATTGTCCGAGACGT+AGG | + | chr4.3:41510786-41510805 | MS.gene08584:intron | 45.0% | |
| CATTGTCAGGGGAATTCATG+AGG | + | chr4.3:41510300-41510319 | MS.gene08584:CDS | 45.0% | |
| CCAGGCGCTTCCAATTATAA+AGG | + | chr4.3:41511918-41511937 | MS.gene08584:CDS | 45.0% | |
| CGAAACACCTGAGTTAGAGA+TGG | - | chr4.3:41510515-41510534 | None:intergenic | 45.0% | |
| CGTTGCTTCCTTTGATGCAA+TGG | + | chr4.3:41510251-41510270 | MS.gene08584:CDS | 45.0% | |
| CTCATGAATTCCCCTGACAA+TGG | - | chr4.3:41510302-41510321 | None:intergenic | 45.0% | |
| CTTTGTCCTTGCCATTGTCA+GGG | + | chr4.3:41510288-41510307 | MS.gene08584:CDS | 45.0% | |
| GCAGGTATAGTTTGAACCAG+AGG | - | chr4.3:41512281-41512300 | None:intergenic | 45.0% | |
| GCTTGGGAAATTGTCCTTCT+TGG | + | chr4.3:41511553-41511572 | MS.gene08584:CDS | 45.0% | |
| TAAAAACGGGAGGTAACTCC+TGG | - | chr4.3:41510557-41510576 | None:intergenic | 45.0% | |
| TTCGATCCCATCTCTAACTC+AGG | + | chr4.3:41510505-41510524 | MS.gene08584:intron | 45.0% | |
| TTTCGTTGTGTGCTTTCTCC+AGG | + | chr4.3:41510530-41510549 | MS.gene08584:intron | 45.0% | |
| TTTGTCCTTGCCATTGTCAG+GGG | + | chr4.3:41510289-41510308 | MS.gene08584:CDS | 45.0% | |
| ! | ACTTTTCTTGCGTGGAGCAT+AGG | + | chr4.3:41510579-41510598 | MS.gene08584:CDS | 45.0% |
| ! | TGCAGTATGGTTGATGTACC+AGG | + | chr4.3:41511900-41511919 | MS.gene08584:intron | 45.0% |
| ! | TTCTTGGATTAGGTGTGTCC+TGG | - | chr4.3:41511368-41511387 | None:intergenic | 45.0% |
| !! | CCTTTATAATTGGAAGCGCC+TGG | - | chr4.3:41511921-41511940 | None:intergenic | 45.0% |
| !! | GAAGTTATACACGGTGCCAT+TGG | + | chr4.3:41510111-41510130 | MS.gene08584:CDS | 45.0% |
| !! | TTATACACGGTGCCATTGGT+AGG | + | chr4.3:41510115-41510134 | MS.gene08584:intron | 45.0% |
| ACACGGATACGAACACGACA+TGG | + | chr4.3:41511266-41511285 | MS.gene08584:intron | 50.0% | |
| CTTCCTCCCCATTGCATCAA+AGG | - | chr4.3:41510262-41510281 | None:intergenic | 50.0% | |
| CTTCCTTTGATGCAATGGGG+AGG | + | chr4.3:41510256-41510275 | MS.gene08584:CDS | 50.0% | |
| CTTTGATGCAATGGGGAGGA+AGG | + | chr4.3:41510260-41510279 | MS.gene08584:CDS | 50.0% | |
| GAATTCCCCTGACAATGGCA+AGG | - | chr4.3:41510297-41510316 | None:intergenic | 50.0% | |
| GACCAATTGTGCCTACGTCT+CGG | - | chr4.3:41510800-41510819 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCCTGGTGT+CGG | - | chr4.3:41511362-41511381 | None:intergenic | 50.0% | |
| GCACGGACACTTCTTGGATT+AGG | - | chr4.3:41511378-41511397 | None:intergenic | 50.0% | |
| TATGTGACATGTCCGACACC+AGG | + | chr4.3:41511347-41511366 | MS.gene08584:intron | 50.0% | |
| !! | ATTTCAGGACTGGTTCCGAG+CGG | + | chr4.3:41510226-41510245 | MS.gene08584:intron | 50.0% |
| !! | TATCCTGTGGGAGTGTTTCC+TGG | + | chr4.3:41511732-41511751 | MS.gene08584:CDS | 50.0% |
| AAAGGAAGCAACGCTCCGCT+CGG | - | chr4.3:41510244-41510263 | None:intergenic | 55.0% | |
| GCCGCTGCTTGAACAAATGC+AGG | - | chr4.3:41512299-41512318 | None:intergenic | 55.0% | |
| GTCCGAGACGTAGGCACAAT+TGG | + | chr4.3:41510795-41510814 | MS.gene08584:intron | 55.0% | |
| TCTCCAGGAAACACTCCCAC+AGG | - | chr4.3:41511738-41511757 | None:intergenic | 55.0% | |
| TGTGTGCTTTCTCCAGGTCC+AGG | + | chr4.3:41510536-41510555 | MS.gene08584:intron | 55.0% | |
| TCTTGCGTGGAGCATAGGCG+AGG | + | chr4.3:41510584-41510603 | MS.gene08584:CDS | 60.0% | |
| CGGGAGGTAACTCCTGGACC+TGG | - | chr4.3:41510551-41510570 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 41510085 | 41512359 | 41510085 | ID=MS.gene08584 |
| chr4.3 | mRNA | 41510085 | 41512359 | 41510085 | ID=MS.gene08584.t1;Parent=MS.gene08584 |
| chr4.3 | exon | 41510085 | 41510132 | 41510085 | ID=MS.gene08584.t1.exon1;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41510085 | 41510132 | 41510085 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41510233 | 41510321 | 41510233 | ID=MS.gene08584.t1.exon2;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41510233 | 41510321 | 41510233 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41510552 | 41510605 | 41510552 | ID=MS.gene08584.t1.exon3;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41510552 | 41510605 | 41510552 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41511522 | 41511589 | 41511522 | ID=MS.gene08584.t1.exon4;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41511522 | 41511589 | 41511522 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41511710 | 41511759 | 41511710 | ID=MS.gene08584.t1.exon5;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41511710 | 41511759 | 41511710 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41511905 | 41512002 | 41511905 | ID=MS.gene08584.t1.exon6;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41511905 | 41512002 | 41511905 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| chr4.3 | exon | 41512255 | 41512359 | 41512255 | ID=MS.gene08584.t1.exon7;Parent=MS.gene08584.t1 |
| chr4.3 | CDS | 41512255 | 41512359 | 41512255 | ID=cds.MS.gene08584.t1;Parent=MS.gene08584.t1 |
| Gene Sequence |
| Protein sequence |
