AlfalfaGEDB | MS.gene08932

M. sativa cultivar XinJiangDaYe / MS.gene08932

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08932.t1	AET04181.1	95.9	365	15	0	51	415	124	488	1.60E-194	688.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08932.t1	G7LHY7	95.9	365	15	0	51	415	124	488	1.2e-194	688.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene08932	0.83258	8.72E-56	-1.69E-46
MS.gene049150	MS.gene08932	0.830565	2.73E-55	-1.69E-46
MS.gene049153	MS.gene08932	0.824683	7.07E-54	-1.69E-46
MS.gene049260	MS.gene08932	0.806496	8.00E-50	-1.69E-46
MS.gene049378	MS.gene08932	0.826812	2.21E-54	-1.69E-46
MS.gene049993	MS.gene08932	0.815807	7.65E-52	-1.69E-46
MS.gene050426	MS.gene08932	-0.83128	1.83E-55	-1.69E-46
MS.gene050642	MS.gene08932	0.814923	1.20E-51	-1.69E-46
MS.gene050750	MS.gene08932	0.83353	5.06E-56	-1.69E-46
MS.gene050820	MS.gene08932	0.802531	5.37E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08932.t1	MTR_8g085620	94.471	416	22	1	1	415	73	488	0.0	772

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08932.t1	AT1G55280	47.355	397	180	10	20	408	14	389	1.24e-107	323
MS.gene08932.t1	AT1G55280	47.355	397	180	10	20	408	59	434	5.39e-107	323

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Find 94 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGTATCAGAGAATT+TGG	0.170887	4.4:-14497155	None:intergenic
AAATACTTTATCTTCCCTTA+AGG	0.370949	4.4:+14498187	MS.gene08932:CDS
AAATTAATCACAAGCAACAA+AGG	0.606917	4.4:+14499763	MS.gene08932:CDS
AACCTTGTGACTCAGCTCGA+AGG	0.583632	4.4:+14499472	MS.gene08932:CDS
AACTTCTGCCCAAGTGTTAT+AGG	0.288096	4.4:-14499979	None:intergenic
AATATAAGTGACTTCAGTGC+TGG	0.501310	4.4:+14498269	MS.gene08932:CDS
ACACCAAAAGATATCATAGT+TGG	0.465828	4.4:+14499904	MS.gene08932:CDS
ACACTTGGGCAGAAGTTACC+TGG	0.542605	4.4:+14499985	MS.gene08932:CDS
ACCAACAAAGAAAGCGAACC+CGG	0.525652	4.4:-14499677	None:intergenic
ACCATCATTGCCAGAAGAAG+AGG	0.565997	4.4:+14499357	MS.gene08932:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGAAGAAATTAAGAAGTG+GGG	-	chr4.4:14497189-14497208	None:intergenic	30.0%
AAGACCATGCTAATATAAAC+CGG	-	chr4.4:14497920-14497939	None:intergenic	30.0%
ACACCAAAAGATATCATAGT+TGG	+	chr4.4:14499904-14499923	MS.gene08932:CDS	30.0%
ACAGCACTTCAAAAAATTTG+AGG	-	chr4.4:14498584-14498603	None:intergenic	30.0%
AGATATCATAGTTGGAATGA+TGG	+	chr4.4:14499912-14499931	MS.gene08932:CDS	30.0%
ATATAGGCAAACATCAAATC+AGG	-	chr4.4:14497452-14497471	None:intergenic	30.0%
ATTTGGATTTATCCTCCTTA+AGG	-	chr4.4:14498205-14498224	None:intergenic	30.0%
CAGCACTTCAAAAAATTTGA+GGG	-	chr4.4:14498583-14498602	None:intergenic	30.0%
CATTTAAGCCTATAACACTT+GGG	+	chr4.4:14499971-14499990	MS.gene08932:CDS	30.0%
GATATACTTCATTTCCAAAG+AGG	+	chr4.4:14498383-14498402	MS.gene08932:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	14497016	14500017	14497016	ID=MS.gene08932
chr4.4	mRNA	14497016	14500017	14497016	ID=MS.gene08932.t1;Parent=MS.gene08932
chr4.4	exon	14497016	14497181	14497016	ID=MS.gene08932.t1.exon1;Parent=MS.gene08932.t1
chr4.4	CDS	14497016	14497181	14497016	ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1
chr4.4	exon	14498111	14498479	14498111	ID=MS.gene08932.t1.exon2;Parent=MS.gene08932.t1
chr4.4	CDS	14498111	14498479	14498111	ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1
chr4.4	exon	14499305	14500017	14499305	ID=MS.gene08932.t1.exon3;Parent=MS.gene08932.t1
chr4.4	CDS	14499305	14500017	14499305	ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1

Gene Sequence

>MS.gene08932

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGGTAACCCCACTTCTTAATTTCTTCGTTAAACTATTAAAAATCTTAACTTTTAAGGTTTAGTTTCACTTAAATGGATTTTAACTGTTCTCTTTATTTTGGGATTGATTTTAATATATGAATTTATTGTGATATTATATTAATTGAAGAGAAAAAATAAAACAAAATTAAATATATGATTCAAAATTTTGGAGGTATTTTTATTGGAAGGAAGCTTTTTAAGCTTTTTAAGCCATATATTTATATGGCTGATTTGGTTTAACACTTTATCCTGATTTGATGTTTGCCTATATATGGCATATATGATGATTATGAAACTTAAATTATCATAACTATATGAATTATGTCATTTGATTTTGTTAAAGTATTGGTCATCCTCACATATTTTATTTTTGAAAGAAACCTACTCTTTTCAAAGTTGTTTGTAGTTATTATTGTCAGGCCTAGCAAGTGGTATATTAAATATTTCAGTGTGGTGAGTACTTAATGATTATAGTTGGTTAGTTTTGGCTGTCAAAGTTGTTGTTTGTGTCATCTGATTTGTGTATCTACAACTTAGTTTATGTAAAAGTACAAAATTTATACTTGCTTTGTCTAGTGACTTTGACAGAATCACAGTAGACTACCGTGTTACAAAAGTTACAATTTAGAGTTTGAAAAGATAACGGTGCCACGGGGATTTCGCCAAACACATTGCCAATCCAAACATGTACTCAGTACTCAAAAGCTTGAACCTAGCCGGTTTATATTAGCATGGTCTTGGTAGATGGCAGAATTAATCAGTTCCATGCTTCTTGGAGCAAATATTTTGGACCAAATAAAGTACTTTTATTTTTTAATTTCACCAAAAGTCATTTGTTATATGTAATCAGTCTCATGTCTGGTGTCCGTGCTTGTGTCGATAATTCATAGCTAACTGGTTTGTGCCACAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTAAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAGTGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTAAGTTATTCTAGTATATATTTTTTTTGGAGTAATTAAGATTCAGTAGACATCATCCTTGACCTTCAATTTTGAAGTCCCTTTAATCAACATCTGTCTTCCCTCAAATTTTTTGAAGTGCTGTGAAATTGTATTTCCTGACATTTGGATCACATTCCAGTTTTTAAACAGAAATGTTATTTGAGTATCAACTTGAGACAACTAAATTCGACAACTTTCTAAATTGTTAACAGGGTTCGCACGAATGTTAAAAGAAGCGTTACATTTGGTTAATAGATATATCAGGTGTTGCAACTAAAAACTTATCTACTAAACTTCACTAACCACAAATTTAAACGTGATTAACCTTGATTTTCAAGTGTTCAAATCTACATATAGTTGGAACACCTGAAATCATGGTTAATAATATTCGAATTCATGGTTAGTTAAGCTCATTTGATGGTTAATAGGTTTTCCGATCTTGTCTTCACCACTAACTACTCATTGAACTACATTAAGCATGTATGTGAATTGCGTTAATAATTTAAATAGTTGTCGAATTTTGTTGTCCCAAATTGATGTTCAAACAACATTTTTGGTTTTAAAAGCATTGTGCAATTCCACCAGAGGCATATCAATGTCATTTCCCCCACTAGGATTCCATCATATATTAGCTGTCCCAACATATATTATTTATATTTTAAGAGTATTACCTCCAAAACTTTAAATTTCTATATTTGTCACTGCATCAAACATAAGGTCTTGATGAAGCTTGAAAAATTAATGTTGGCTTGATCAATCGAGTTTATCTATTTAACAATACTCTTCTTCTTCCTCTAAGGTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTCGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTGTTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGGCTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>MS.gene08932.t1

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLKEDKSKSLFRVKLVTSNLYGSNISDFSAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALALGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM