Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08932.t1 | AET04181.1 | 95.9 | 365 | 15 | 0 | 51 | 415 | 124 | 488 | 1.60E-194 | 688.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08932.t1 | G7LHY7 | 95.9 | 365 | 15 | 0 | 51 | 415 | 124 | 488 | 1.2e-194 | 688.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049149 | MS.gene08932 | 0.83258 | 8.72E-56 | -1.69E-46 |
MS.gene049150 | MS.gene08932 | 0.830565 | 2.73E-55 | -1.69E-46 |
MS.gene049153 | MS.gene08932 | 0.824683 | 7.07E-54 | -1.69E-46 |
MS.gene049260 | MS.gene08932 | 0.806496 | 8.00E-50 | -1.69E-46 |
MS.gene049378 | MS.gene08932 | 0.826812 | 2.21E-54 | -1.69E-46 |
MS.gene049993 | MS.gene08932 | 0.815807 | 7.65E-52 | -1.69E-46 |
MS.gene050426 | MS.gene08932 | -0.83128 | 1.83E-55 | -1.69E-46 |
MS.gene050642 | MS.gene08932 | 0.814923 | 1.20E-51 | -1.69E-46 |
MS.gene050750 | MS.gene08932 | 0.83353 | 5.06E-56 | -1.69E-46 |
MS.gene050820 | MS.gene08932 | 0.802531 | 5.37E-49 | -1.69E-46 |
MS.gene050953 | MS.gene08932 | 0.806191 | 9.27E-50 | -1.69E-46 |
MS.gene051373 | MS.gene08932 | 0.818956 | 1.50E-52 | -1.69E-46 |
MS.gene051525 | MS.gene08932 | 0.800412 | 1.46E-48 | -1.69E-46 |
MS.gene051860 | MS.gene08932 | 0.819161 | 1.34E-52 | -1.69E-46 |
MS.gene051983 | MS.gene08932 | 0.86419 | 1.45E-64 | -1.69E-46 |
MS.gene052011 | MS.gene08932 | -0.824972 | 6.04E-54 | -1.69E-46 |
MS.gene052077 | MS.gene08932 | 0.825805 | 3.84E-54 | -1.69E-46 |
MS.gene052333 | MS.gene08932 | 0.809897 | 1.51E-50 | -1.69E-46 |
MS.gene053166 | MS.gene08932 | 0.802661 | 5.05E-49 | -1.69E-46 |
MS.gene053176 | MS.gene08932 | 0.859588 | 3.73E-63 | -1.69E-46 |
MS.gene053494 | MS.gene08932 | 0.831631 | 1.50E-55 | -1.69E-46 |
MS.gene053836 | MS.gene08932 | 0.808111 | 3.64E-50 | -1.69E-46 |
MS.gene053928 | MS.gene08932 | 0.805287 | 1.44E-49 | -1.69E-46 |
MS.gene054183 | MS.gene08932 | 0.849858 | 2.47E-60 | -1.69E-46 |
MS.gene054405 | MS.gene08932 | 0.80647 | 8.10E-50 | -1.69E-46 |
MS.gene054548 | MS.gene08932 | 0.836255 | 1.04E-56 | -1.69E-46 |
MS.gene054556 | MS.gene08932 | 0.802266 | 6.09E-49 | -1.69E-46 |
MS.gene054559 | MS.gene08932 | 0.822536 | 2.25E-53 | -1.69E-46 |
MS.gene054719 | MS.gene08932 | 0.812067 | 5.11E-51 | -1.69E-46 |
MS.gene054930 | MS.gene08932 | 0.814876 | 1.23E-51 | -1.69E-46 |
MS.gene055356 | MS.gene08932 | 0.831505 | 1.61E-55 | -1.69E-46 |
MS.gene055358 | MS.gene08932 | 0.819647 | 1.04E-52 | -1.69E-46 |
MS.gene055367 | MS.gene08932 | 0.827833 | 1.26E-54 | -1.69E-46 |
MS.gene05553 | MS.gene08932 | 0.844315 | 8.16E-59 | -1.69E-46 |
MS.gene05556 | MS.gene08932 | 0.812888 | 3.38E-51 | -1.69E-46 |
MS.gene055701 | MS.gene08932 | 0.829793 | 4.22E-55 | -1.69E-46 |
MS.gene056506 | MS.gene08932 | 0.807971 | 3.89E-50 | -1.69E-46 |
MS.gene056723 | MS.gene08932 | 0.837931 | 3.88E-57 | -1.69E-46 |
MS.gene056899 | MS.gene08932 | -0.8043 | 2.31E-49 | -1.69E-46 |
MS.gene056979 | MS.gene08932 | 0.849262 | 3.62E-60 | -1.69E-46 |
MS.gene057200 | MS.gene08932 | 0.802713 | 4.92E-49 | -1.69E-46 |
MS.gene057396 | MS.gene08932 | 0.821175 | 4.64E-53 | -1.69E-46 |
MS.gene058142 | MS.gene08932 | 0.843661 | 1.22E-58 | -1.69E-46 |
MS.gene059247 | MS.gene08932 | 0.840911 | 6.54E-58 | -1.69E-46 |
MS.gene059285 | MS.gene08932 | 0.80405 | 2.60E-49 | -1.69E-46 |
MS.gene059420 | MS.gene08932 | 0.828025 | 1.13E-54 | -1.69E-46 |
MS.gene059609 | MS.gene08932 | 0.830565 | 2.73E-55 | -1.69E-46 |
MS.gene061114 | MS.gene08932 | -0.859613 | 3.66E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08932.t1 | MTR_8g085620 | 94.471 | 416 | 22 | 1 | 1 | 415 | 73 | 488 | 0.0 | 772 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08932.t1 | AT1G55280 | 47.355 | 397 | 180 | 10 | 20 | 408 | 14 | 389 | 1.24e-107 | 323 |
MS.gene08932.t1 | AT1G55280 | 47.355 | 397 | 180 | 10 | 20 | 408 | 59 | 434 | 5.39e-107 | 323 |
Find 94 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCAAGACTTGAGGCTATT+TGG | 0.152892 | 4.4:+14498441 | MS.gene08932:CDS |
AAAATTAGTATCAGAGAATT+TGG | 0.170887 | 4.4:-14497155 | None:intergenic |
ATAAATCCAAATCTTTATTC+AGG | 0.239984 | 4.4:+14498213 | MS.gene08932:CDS |
GTAAGTGTGGCATTGGCTTT+AGG | 0.249935 | 4.4:+14499826 | MS.gene08932:CDS |
CTTGACCCTGAATAAAGATT+TGG | 0.283207 | 4.4:-14498219 | None:intergenic |
ATTTGGGTCGGTGTTGATTC+AGG | 0.287536 | 4.4:+14498458 | MS.gene08932:CDS |
AACTTCTGCCCAAGTGTTAT+AGG | 0.288096 | 4.4:-14499979 | None:intergenic |
ATTCCAACTATGATATCTTT+TGG | 0.298685 | 4.4:-14499907 | None:intergenic |
ATTCATCAACAGAACCTCTT+TGG | 0.299534 | 4.4:-14498397 | None:intergenic |
CACTGGTATTCTCTTCAATA+TGG | 0.322369 | 4.4:-14498327 | None:intergenic |
CCTTTGAGATGACAGGAGTT+TGG | 0.322539 | 4.4:-14499546 | None:intergenic |
TGCAAGACTTGAGGCTATTT+GGG | 0.323891 | 4.4:+14498442 | MS.gene08932:CDS |
TAAGTGTGGCATTGGCTTTA+GGG | 0.327988 | 4.4:+14499827 | MS.gene08932:CDS |
GCTTTCTTTGTTGGTGGGAT+TGG | 0.336342 | 4.4:+14499685 | MS.gene08932:CDS |
ATTTGGATTTATCCTCCTTA+AGG | 0.338464 | 4.4:-14498202 | None:intergenic |
ACCGATCATTCTACAGAATC+AGG | 0.346191 | 4.4:+14498359 | MS.gene08932:CDS |
ACCGGGTTCGCTTTCTTTGT+TGG | 0.369998 | 4.4:+14499676 | MS.gene08932:CDS |
AAATACTTTATCTTCCCTTA+AGG | 0.370949 | 4.4:+14498187 | MS.gene08932:CDS |
TATGGTGGTACCTCTTCTTC+TGG | 0.372818 | 4.4:-14499367 | None:intergenic |
ACCTCTTCTTCTGGCAATGA+TGG | 0.373177 | 4.4:-14499358 | None:intergenic |
GGAACTGATGCATTGTTTAG+AGG | 0.377564 | 4.4:+14499787 | MS.gene08932:CDS |
TTCAGAATTTATGACTGTTA+AGG | 0.381614 | 4.4:-14499329 | None:intergenic |
TTTGGATTTATCCTCCTTAA+GGG | 0.390006 | 4.4:-14498201 | None:intergenic |
ATTTGAGCCATATAAGTTGC+TGG | 0.397282 | 4.4:-14498249 | None:intergenic |
TTGGTTACCAGCAACTTATA+TGG | 0.399396 | 4.4:+14498242 | MS.gene08932:CDS |
CTTTCTTCCTTTGAGATGAC+AGG | 0.409228 | 4.4:-14499553 | None:intergenic |
CCAATACGACTTTCGAATTG+AGG | 0.415792 | 4.4:+14499399 | MS.gene08932:CDS |
TTCTTTGTTGGTGGGATTGG+AGG | 0.421123 | 4.4:+14499688 | MS.gene08932:CDS |
AGGTATGTGGACGGATTGCC+AGG | 0.423984 | 4.4:+14499736 | MS.gene08932:CDS |
CTATGCTTGATAGACGTAGA+TGG | 0.426250 | 4.4:+14498299 | MS.gene08932:CDS |
CCTCAATTCGAAAGTCGTAT+TGG | 0.435999 | 4.4:-14499399 | None:intergenic |
CTCTCAGCTGGTGAAAATAC+CGG | 0.436324 | 4.4:+14499658 | MS.gene08932:CDS |
TGCATTGTTTAGAGGATTGA+AGG | 0.450526 | 4.4:+14499795 | MS.gene08932:CDS |
TTCCTCTAAGGTCAGGTCAA+TGG | 0.462389 | 4.4:+14499290 | MS.gene08932:intron |
TCGAGCTGAGTCACAAGGTT+AGG | 0.465662 | 4.4:-14499469 | None:intergenic |
ACACCAAAAGATATCATAGT+TGG | 0.465828 | 4.4:+14499904 | MS.gene08932:CDS |
TGGCAAAACAACTGATGGTC+TGG | 0.469882 | 4.4:-14498126 | None:intergenic |
GGTTCGCTTTCTTTGTTGGT+GGG | 0.473259 | 4.4:+14499680 | MS.gene08932:CDS |
GATATCATAGTTGGAATGAT+GGG | 0.476033 | 4.4:+14499913 | MS.gene08932:CDS |
TCGTATTGGAAGCCGGTGTA+TGG | 0.480131 | 4.4:-14499385 | None:intergenic |
TCCTATAGTAAGTGTGGCAT+TGG | 0.484208 | 4.4:+14499819 | MS.gene08932:CDS |
AGATATCATAGTTGGAATGA+TGG | 0.485907 | 4.4:+14499912 | MS.gene08932:CDS |
CGAATTGAGGATGCATTGCT+TGG | 0.486399 | 4.4:+14499412 | MS.gene08932:CDS |
ATCTTTATTCAGGGTCAAGT+TGG | 0.488774 | 4.4:+14498223 | MS.gene08932:CDS |
GCATTTAAGCCTATAACACT+TGG | 0.489741 | 4.4:+14499970 | MS.gene08932:CDS |
TAAATCCAAATCTTTATTCA+GGG | 0.498208 | 4.4:+14498214 | MS.gene08932:CDS |
TGTATCTGCTATTGTTGCAG+AGG | 0.499344 | 4.4:+14499716 | MS.gene08932:CDS |
GGGTTCGCTTTCTTTGTTGG+TGG | 0.499672 | 4.4:+14499679 | MS.gene08932:CDS |
AATATAAGTGACTTCAGTGC+TGG | 0.501310 | 4.4:+14498269 | MS.gene08932:CDS |
GCCAATGCCACACTTACTAT+AGG | 0.501445 | 4.4:-14499820 | None:intergenic |
TCAATTGCTTCCCTCTCAGC+TGG | 0.512231 | 4.4:+14499646 | MS.gene08932:CDS |
ATGTAAAGTTTCTGTGGTGT+TGG | 0.512933 | 4.4:+14499945 | MS.gene08932:CDS |
CATACTTTCACGTCAGAGGC+TGG | 0.524216 | 4.4:-14498146 | None:intergenic |
CCCTGATTCTGTAGAATGAT+CGG | 0.525561 | 4.4:-14498360 | None:intergenic |
ACCAACAAAGAAAGCGAACC+CGG | 0.525652 | 4.4:-14499677 | None:intergenic |
ACTTGAAATTCTTCTAGAAG+AGG | 0.530331 | 4.4:-14497104 | None:intergenic |
GATATACTTCATTTCCAAAG+AGG | 0.531996 | 4.4:+14498383 | MS.gene08932:CDS |
TAACAGTCATAAATTCTGAA+TGG | 0.537218 | 4.4:+14499332 | MS.gene08932:CDS |
ACACTTGGGCAGAAGTTACC+TGG | 0.542605 | 4.4:+14499985 | MS.gene08932:CDS |
TACTTTATCTTCCCTTAAGG+AGG | 0.546271 | 4.4:+14498190 | MS.gene08932:CDS |
TTTGTAGTGAAGTATAGCTC+AGG | 0.553123 | 4.4:+14499859 | MS.gene08932:CDS |
AGACTTGAGGCTATTTGGGT+CGG | 0.558381 | 4.4:+14498446 | MS.gene08932:CDS |
TCTTGCATGTAAAGTTTCTG+TGG | 0.561151 | 4.4:+14499939 | MS.gene08932:CDS |
ACCATCATTGCCAGAAGAAG+AGG | 0.565997 | 4.4:+14499357 | MS.gene08932:CDS |
GAGGCTGGCAAAACAACTGA+TGG | 0.567913 | 4.4:-14498131 | None:intergenic |
TTGTGAATGAGTGAAGTTGA+AGG | 0.568987 | 4.4:-14497046 | None:intergenic |
TGATCGGTCATCAAACTCAC+TGG | 0.570085 | 4.4:-14498344 | None:intergenic |
GCTATTGTTGCAGAGGTATG+TGG | 0.570298 | 4.4:+14499723 | MS.gene08932:CDS |
GCATTGTTTAGAGGATTGAA+GGG | 0.571930 | 4.4:+14499796 | MS.gene08932:CDS |
AGGTCAGGTCAATGGAGACT+AGG | 0.573348 | 4.4:+14499298 | MS.gene08932:intron |
ACCTTGTGACTCAGCTCGAA+GGG | 0.573530 | 4.4:+14499473 | MS.gene08932:CDS |
TCGAAAGTCGTATTGGAAGC+CGG | 0.576014 | 4.4:-14499392 | None:intergenic |
CATCTCAAAGGAAGAAAGCA+TGG | 0.576259 | 4.4:+14499558 | MS.gene08932:CDS |
CCGATCATTCTACAGAATCA+GGG | 0.579731 | 4.4:+14498360 | MS.gene08932:CDS |
CCAAACTCCTGTCATCTCAA+AGG | 0.580577 | 4.4:+14499546 | MS.gene08932:CDS |
AACCTTGTGACTCAGCTCGA+AGG | 0.583632 | 4.4:+14499472 | MS.gene08932:CDS |
AGGAACTGATCTATCCATGT+TGG | 0.588578 | 4.4:+14499438 | MS.gene08932:CDS |
CATCTACGTCTATCAAGCAT+AGG | 0.594306 | 4.4:-14498298 | None:intergenic |
TGTGACTCAGCTCGAAGGGA+CGG | 0.596007 | 4.4:+14499477 | MS.gene08932:CDS |
TGTGCATACTTTCACGTCAG+AGG | 0.601261 | 4.4:-14498150 | None:intergenic |
TCTCAGCTGGTGAAAATACC+GGG | 0.602142 | 4.4:+14499659 | MS.gene08932:CDS |
TATTGGAAGCCGGTGTATGG+TGG | 0.603889 | 4.4:-14499382 | None:intergenic |
AAATTAATCACAAGCAACAA+AGG | 0.606917 | 4.4:+14499763 | MS.gene08932:CDS |
GAGGATGCATTGCTTGGTGA+AGG | 0.609971 | 4.4:+14499418 | MS.gene08932:CDS |
CATTTAAGCCTATAACACTT+GGG | 0.611508 | 4.4:+14499971 | MS.gene08932:CDS |
GAAGGGTCCTATAGTAAGTG+TGG | 0.617641 | 4.4:+14499813 | MS.gene08932:CDS |
TCCCTTCGAGCTGAGTCACA+AGG | 0.619102 | 4.4:-14499474 | None:intergenic |
CGATCATTCTACAGAATCAG+GGG | 0.632486 | 4.4:+14498361 | MS.gene08932:CDS |
GTGTATAATTACATGTCACC+AGG | 0.632874 | 4.4:-14500003 | None:intergenic |
GTTAGGTCTTAATTCCAACA+TGG | 0.676496 | 4.4:-14499452 | None:intergenic |
TTAATCACAAGCAACAAAGG+AGG | 0.678453 | 4.4:+14499766 | MS.gene08932:CDS |
TTGTTGCAGAGGTATGTGGA+CGG | 0.680400 | 4.4:+14499727 | MS.gene08932:CDS |
GAAGAGGTACCACCATACAC+CGG | 0.692574 | 4.4:+14499373 | MS.gene08932:CDS |
CTCAAAGGAAGAAAGCATGG+AGG | 0.740445 | 4.4:+14499561 | MS.gene08932:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATAAAAGTACTTTATT+TGG | - | chr4.4:14497995-14498014 | None:intergenic | 10.0% |
!!! | AAATATATGATTCAAAATTT+TGG | + | chr4.4:14497348-14497367 | MS.gene08932:intron | 10.0% |
!!! | AATATAGAAATTTAAAGTTT+TGG | - | chr4.4:14499177-14499196 | None:intergenic | 10.0% |
!!! | ATTAAAAATCTTAACTTTTA+AGG | + | chr4.4:14497214-14497233 | MS.gene08932:intron | 10.0% |
!!! | ATTCTAGTATATATTTTTTT+TGG | + | chr4.4:14498487-14498506 | MS.gene08932:intron | 10.0% |
!! | TTTCAAAAATAAAATATGTG+AGG | - | chr4.4:14497557-14497576 | None:intergenic | 15.0% |
!!! | ATTTGATTTTGTTAAAGTAT+TGG | + | chr4.4:14497527-14497546 | MS.gene08932:intron | 15.0% |
!!! | TTTTAAGCCATATATTTATA+TGG | + | chr4.4:14497404-14497423 | MS.gene08932:intron | 15.0% |
!! | AAAATTAGTATCAGAGAATT+TGG | - | chr4.4:14497158-14497177 | None:intergenic | 20.0% |
!! | AAATCAGCCATATAAATATA+TGG | - | chr4.4:14497414-14497433 | None:intergenic | 20.0% |
!! | AACTTTCTAAATTGTTAACA+GGG | + | chr4.4:14498692-14498711 | MS.gene08932:intron | 20.0% |
!! | ATAAATCCAAATCTTTATTC+AGG | + | chr4.4:14498213-14498232 | MS.gene08932:CDS | 20.0% |
!! | ATATATTTATATGGCTGATT+TGG | + | chr4.4:14497413-14497432 | MS.gene08932:intron | 20.0% |
!! | ATATTATTAACCATGATTTC+AGG | - | chr4.4:14498869-14498888 | None:intergenic | 20.0% |
!! | ATTTGGTTAATAGATATATC+AGG | + | chr4.4:14498743-14498762 | MS.gene08932:intron | 20.0% |
!! | GTATATTAAATATTTCAGTG+TGG | + | chr4.4:14497632-14497651 | MS.gene08932:intron | 20.0% |
!! | GTTAATAATATTCGAATTCA+TGG | + | chr4.4:14498878-14498897 | MS.gene08932:intron | 20.0% |
!! | TAAATCCAAATCTTTATTCA+GGG | + | chr4.4:14498214-14498233 | MS.gene08932:CDS | 20.0% |
!! | TAACATTTCTGTTTAAAAAC+TGG | - | chr4.4:14498639-14498658 | None:intergenic | 20.0% |
!!! | AAATTGTAACTTTTGTAACA+CGG | - | chr4.4:14497807-14497826 | None:intergenic | 20.0% |
!!! | AATTTTGGAGGTATTTTTAT+TGG | + | chr4.4:14497363-14497382 | MS.gene08932:intron | 20.0% |
!!! | ATAGAAATTTAAAGTTTTGG+AGG | - | chr4.4:14499174-14499193 | None:intergenic | 20.0% |
!!! | TACATATAACAAATGACTTT+TGG | - | chr4.4:14498026-14498045 | None:intergenic | 20.0% |
!!! | TATATGATTCAAAATTTTGG+AGG | + | chr4.4:14497351-14497370 | MS.gene08932:intron | 20.0% |
!!! | TCTTTTTTGAACAAACTTAT+AGG | - | chr4.4:14499505-14499524 | None:intergenic | 20.0% |
!!! | TTAACTGTTCTCTTTATTTT+GGG | + | chr4.4:14497259-14497278 | MS.gene08932:intron | 20.0% |
!!! | TTTAACTGTTCTCTTTATTT+TGG | + | chr4.4:14497258-14497277 | MS.gene08932:intron | 20.0% |
!!! | TTTAGAGTTTGAAAAGATAA+CGG | + | chr4.4:14497824-14497843 | MS.gene08932:intron | 20.0% |
! | AAATACTTTATCTTCCCTTA+AGG | + | chr4.4:14498187-14498206 | MS.gene08932:CDS | 25.0% |
! | AAATTAATCACAAGCAACAA+AGG | + | chr4.4:14499763-14499782 | MS.gene08932:CDS | 25.0% |
! | AAATTGTATTTCCTGACATT+TGG | + | chr4.4:14498605-14498624 | MS.gene08932:intron | 25.0% |
! | ATTTGAACACTTGAAAATCA+AGG | - | chr4.4:14498828-14498847 | None:intergenic | 25.0% |
! | ATTTGATGTTTGCCTATATA+TGG | + | chr4.4:14497453-14497472 | MS.gene08932:intron | 25.0% |
! | CAACTTTCTAAATTGTTAAC+AGG | + | chr4.4:14498691-14498710 | MS.gene08932:intron | 25.0% |
! | GAAGCTTGAAAAATTAATGT+TGG | + | chr4.4:14499226-14499245 | MS.gene08932:intron | 25.0% |
! | GAGTACTTAATGATTATAGT+TGG | + | chr4.4:14497656-14497675 | MS.gene08932:intron | 25.0% |
! | GTTAATCACGTTTAAATTTG+TGG | - | chr4.4:14498806-14498825 | None:intergenic | 25.0% |
! | TAACAGTCATAAATTCTGAA+TGG | + | chr4.4:14499332-14499351 | MS.gene08932:CDS | 25.0% |
! | TAACGAAGAAATTAAGAAGT+GGG | - | chr4.4:14497190-14497209 | None:intergenic | 25.0% |
! | TATTTAATATACCACTTGCT+AGG | - | chr4.4:14497624-14497643 | None:intergenic | 25.0% |
! | TCATCATATATGCCATATAT+AGG | - | chr4.4:14497468-14497487 | None:intergenic | 25.0% |
! | TGTTCAAATCTACATATAGT+TGG | + | chr4.4:14498839-14498858 | MS.gene08932:intron | 25.0% |
! | TGTTTGTAGTTATTATTGTC+AGG | + | chr4.4:14497598-14497617 | MS.gene08932:intron | 25.0% |
! | TTAACGAAGAAATTAAGAAG+TGG | - | chr4.4:14497191-14497210 | None:intergenic | 25.0% |
! | TTCAGAATTTATGACTGTTA+AGG | - | chr4.4:14499332-14499351 | None:intergenic | 25.0% |
!! | AAGGTTTAGTTTCACTTAAA+TGG | + | chr4.4:14497233-14497252 | MS.gene08932:intron | 25.0% |
!! | ATGTTGTTTGAACATCAATT+TGG | - | chr4.4:14499032-14499051 | None:intergenic | 25.0% |
!! | ATTCCAACTATGATATCTTT+TGG | - | chr4.4:14499910-14499929 | None:intergenic | 25.0% |
!! | TGATGTTCAAACAACATTTT+TGG | + | chr4.4:14499035-14499054 | MS.gene08932:intron | 25.0% |
!! | TGTTGTTTGAACATCAATTT+GGG | - | chr4.4:14499031-14499050 | None:intergenic | 25.0% |
!! | TTCTCTGATACTAATTTTCA+AGG | + | chr4.4:14497160-14497179 | MS.gene08932:CDS | 25.0% |
!!! | GTTGATGAATTCATTTTTGA+GGG | + | chr4.4:14498410-14498429 | MS.gene08932:CDS | 25.0% |
!!! | TGATTATAGTTGGTTAGTTT+TGG | + | chr4.4:14497666-14497685 | MS.gene08932:intron | 25.0% |
!!! | TGTTGATGAATTCATTTTTG+AGG | + | chr4.4:14498409-14498428 | MS.gene08932:CDS | 25.0% |
AACGAAGAAATTAAGAAGTG+GGG | - | chr4.4:14497189-14497208 | None:intergenic | 30.0% | |
AAGACCATGCTAATATAAAC+CGG | - | chr4.4:14497920-14497939 | None:intergenic | 30.0% | |
ACACCAAAAGATATCATAGT+TGG | + | chr4.4:14499904-14499923 | MS.gene08932:CDS | 30.0% | |
ACAGCACTTCAAAAAATTTG+AGG | - | chr4.4:14498584-14498603 | None:intergenic | 30.0% | |
AGATATCATAGTTGGAATGA+TGG | + | chr4.4:14499912-14499931 | MS.gene08932:CDS | 30.0% | |
ATATAGGCAAACATCAAATC+AGG | - | chr4.4:14497452-14497471 | None:intergenic | 30.0% | |
ATTTGGATTTATCCTCCTTA+AGG | - | chr4.4:14498205-14498224 | None:intergenic | 30.0% | |
CAGCACTTCAAAAAATTTGA+GGG | - | chr4.4:14498583-14498602 | None:intergenic | 30.0% | |
CATTTAAGCCTATAACACTT+GGG | + | chr4.4:14499971-14499990 | MS.gene08932:CDS | 30.0% | |
GATATACTTCATTTCCAAAG+AGG | + | chr4.4:14498383-14498402 | MS.gene08932:CDS | 30.0% | |
GATATCATAGTTGGAATGAT+GGG | + | chr4.4:14499913-14499932 | MS.gene08932:CDS | 30.0% | |
TAAAGGGACTTCAAAATTGA+AGG | - | chr4.4:14498545-14498564 | None:intergenic | 30.0% | |
TTTGGATTTATCCTCCTTAA+GGG | - | chr4.4:14498204-14498223 | None:intergenic | 30.0% | |
! | AAGCTCATTTGATGGTTAAT+AGG | + | chr4.4:14498907-14498926 | MS.gene08932:intron | 30.0% |
! | AATATATGATGGAATCCTAG+TGG | - | chr4.4:14499111-14499130 | None:intergenic | 30.0% |
! | ACTTGAAATTCTTCTAGAAG+AGG | - | chr4.4:14497107-14497126 | None:intergenic | 30.0% |
! | ATATATGATGGAATCCTAGT+GGG | - | chr4.4:14499110-14499129 | None:intergenic | 30.0% |
! | CAAACAACTTTGAAAAGAGT+AGG | - | chr4.4:14497584-14497603 | None:intergenic | 30.0% |
! | CTTGTGATTAATTTTGAACC+TGG | - | chr4.4:14499757-14499776 | None:intergenic | 30.0% |
! | GAAGACAGATGTTGATTAAA+GGG | - | chr4.4:14498561-14498580 | None:intergenic | 30.0% |
!! | GTTAAAAGAAGCGTTACATT+TGG | + | chr4.4:14498726-14498745 | MS.gene08932:intron | 30.0% |
!!! | TTGGAGGTATTTTTATTGGA+AGG | + | chr4.4:14497367-14497386 | MS.gene08932:intron | 30.0% |
AAATGACATTGATATGCCTC+TGG | - | chr4.4:14499085-14499104 | None:intergenic | 35.0% | |
AATATAAGTGACTTCAGTGC+TGG | + | chr4.4:14498269-14498288 | MS.gene08932:CDS | 35.0% | |
AATATTTGCTCCAAGAAGCA+TGG | - | chr4.4:14497967-14497986 | None:intergenic | 35.0% | |
ATACTCTTCTTCTTCCTCTA+AGG | + | chr4.4:14499278-14499297 | MS.gene08932:intron | 35.0% | |
ATCTTTATTCAGGGTCAAGT+TGG | + | chr4.4:14498223-14498242 | MS.gene08932:CDS | 35.0% | |
ATGAATTATCGACACAAGCA+CGG | - | chr4.4:14498069-14498088 | None:intergenic | 35.0% | |
ATGTAAAGTTTCTGTGGTGT+TGG | + | chr4.4:14499945-14499964 | MS.gene08932:CDS | 35.0% | |
ATTCATCAACAGAACCTCTT+TGG | - | chr4.4:14498400-14498419 | None:intergenic | 35.0% | |
ATTTGAGCCATATAAGTTGC+TGG | - | chr4.4:14498252-14498271 | None:intergenic | 35.0% | |
CACTGGTATTCTCTTCAATA+TGG | - | chr4.4:14498330-14498349 | None:intergenic | 35.0% | |
CTTGACCCTGAATAAAGATT+TGG | - | chr4.4:14498222-14498241 | None:intergenic | 35.0% | |
GACTTCAAAATTGAAGGTCA+AGG | - | chr4.4:14498539-14498558 | None:intergenic | 35.0% | |
GCATTGTTTAGAGGATTGAA+GGG | + | chr4.4:14499796-14499815 | MS.gene08932:CDS | 35.0% | |
GCATTTAAGCCTATAACACT+TGG | + | chr4.4:14499970-14499989 | MS.gene08932:CDS | 35.0% | |
GGTTTATATTAGCATGGTCT+TGG | + | chr4.4:14497919-14497938 | MS.gene08932:intron | 35.0% | |
GTAGTTCAATGAGTAGTTAG+TGG | - | chr4.4:14498952-14498971 | None:intergenic | 35.0% | |
GTCGATAATTCATAGCTAAC+TGG | + | chr4.4:14498076-14498095 | MS.gene08932:intron | 35.0% | |
GTTAGGTCTTAATTCCAACA+TGG | - | chr4.4:14499455-14499474 | None:intergenic | 35.0% | |
TACTGAGTACATGTTTGGAT+TGG | - | chr4.4:14497878-14497897 | None:intergenic | 35.0% | |
TACTTTATCTTCCCTTAAGG+AGG | + | chr4.4:14498190-14498209 | MS.gene08932:CDS | 35.0% | |
TATGTAATCAGTCTCATGTC+TGG | + | chr4.4:14498040-14498059 | MS.gene08932:intron | 35.0% | |
TCCAAAAATTGCAAGACTTG+AGG | + | chr4.4:14498433-14498452 | MS.gene08932:CDS | 35.0% | |
TCTTGCATGTAAAGTTTCTG+TGG | + | chr4.4:14499939-14499958 | MS.gene08932:CDS | 35.0% | |
TGCATTGTTTAGAGGATTGA+AGG | + | chr4.4:14499795-14499814 | MS.gene08932:CDS | 35.0% | |
TTAATCACAAGCAACAAAGG+AGG | + | chr4.4:14499766-14499785 | MS.gene08932:CDS | 35.0% | |
TTAATCAGTTCCATGCTTCT+TGG | + | chr4.4:14497954-14497973 | MS.gene08932:intron | 35.0% | |
TTGGGACAGCTAATATATGA+TGG | - | chr4.4:14499122-14499141 | None:intergenic | 35.0% | |
TTGGTTACCAGCAACTTATA+TGG | + | chr4.4:14498242-14498261 | MS.gene08932:CDS | 35.0% | |
TTGTCACTGCATCAAACATA+AGG | + | chr4.4:14499196-14499215 | MS.gene08932:intron | 35.0% | |
TTGTGAATGAGTGAAGTTGA+AGG | - | chr4.4:14497049-14497068 | None:intergenic | 35.0% | |
TTTGTAGTGAAGTATAGCTC+AGG | + | chr4.4:14499859-14499878 | MS.gene08932:CDS | 35.0% | |
! | GAAGGAATCATAGTTTTCAC+AGG | - | chr4.4:14497031-14497050 | None:intergenic | 35.0% |
! | GCTTCTTGGAGCAAATATTT+TGG | + | chr4.4:14497968-14497987 | MS.gene08932:intron | 35.0% |
! | GGAAGACAGATGTTGATTAA+AGG | - | chr4.4:14498562-14498581 | None:intergenic | 35.0% |
! | GGTATAACTCTGAAAATCTG+TGG | - | chr4.4:14498108-14498127 | None:intergenic | 35.0% |
! | GGTTAGTTAAGCTCATTTGA+TGG | + | chr4.4:14498899-14498918 | MS.gene08932:intron | 35.0% |
! | TATATGATGGAATCCTAGTG+GGG | - | chr4.4:14499109-14499128 | None:intergenic | 35.0% |
!! | GATGCTGTGCTGATATTTTT+CGG | + | chr4.4:14499619-14499638 | MS.gene08932:CDS | 35.0% |
!! | TTGAGTACTGAGTACATGTT+TGG | - | chr4.4:14497883-14497902 | None:intergenic | 35.0% |
AACTTCTGCCCAAGTGTTAT+AGG | - | chr4.4:14499982-14500001 | None:intergenic | 40.0% | |
ACCGATCATTCTACAGAATC+AGG | + | chr4.4:14498359-14498378 | MS.gene08932:CDS | 40.0% | |
AGGAACTGATCTATCCATGT+TGG | + | chr4.4:14499438-14499457 | MS.gene08932:CDS | 40.0% | |
AGTTGGAACACCTGAAATCA+TGG | + | chr4.4:14498856-14498875 | MS.gene08932:intron | 40.0% | |
CATCTACGTCTATCAAGCAT+AGG | - | chr4.4:14498301-14498320 | None:intergenic | 40.0% | |
CATCTCAAAGGAAGAAAGCA+TGG | + | chr4.4:14499558-14499577 | MS.gene08932:CDS | 40.0% | |
CATGCTAATATAAACCGGCT+AGG | - | chr4.4:14497915-14497934 | None:intergenic | 40.0% | |
CCAATACGACTTTCGAATTG+AGG | + | chr4.4:14499399-14499418 | MS.gene08932:CDS | 40.0% | |
CCCTGATTCTGTAGAATGAT+CGG | - | chr4.4:14498363-14498382 | None:intergenic | 40.0% | |
CCGATCATTCTACAGAATCA+GGG | + | chr4.4:14498360-14498379 | MS.gene08932:CDS | 40.0% | |
CCTCAATTCGAAAGTCGTAT+TGG | - | chr4.4:14499402-14499421 | None:intergenic | 40.0% | |
CGATCATTCTACAGAATCAG+GGG | + | chr4.4:14498361-14498380 | MS.gene08932:CDS | 40.0% | |
CTATGCTTGATAGACGTAGA+TGG | + | chr4.4:14498299-14498318 | MS.gene08932:CDS | 40.0% | |
GGAACTGATGCATTGTTTAG+AGG | + | chr4.4:14499787-14499806 | MS.gene08932:CDS | 40.0% | |
GTTAGTGGTGAAGACAAGAT+CGG | - | chr4.4:14498937-14498956 | None:intergenic | 40.0% | |
TCCTATAGTAAGTGTGGCAT+TGG | + | chr4.4:14499819-14499838 | MS.gene08932:CDS | 40.0% | |
TGCAAGACTTGAGGCTATTT+GGG | + | chr4.4:14498442-14498461 | MS.gene08932:CDS | 40.0% | |
TGGAATGTGATCCAAATGTC+AGG | - | chr4.4:14498619-14498638 | None:intergenic | 40.0% | |
TGTATCTGCTATTGTTGCAG+AGG | + | chr4.4:14499716-14499735 | MS.gene08932:CDS | 40.0% | |
TTGCAAGACTTGAGGCTATT+TGG | + | chr4.4:14498441-14498460 | MS.gene08932:CDS | 40.0% | |
! | ATATGATGGAATCCTAGTGG+GGG | - | chr4.4:14499108-14499127 | None:intergenic | 40.0% |
! | ATTAGCATGGTCTTGGTAGA+TGG | + | chr4.4:14497926-14497945 | MS.gene08932:intron | 40.0% |
! | CTAGCCGGTTTATATTAGCA+TGG | + | chr4.4:14497913-14497932 | MS.gene08932:intron | 40.0% |
! | GCCTCAAGTCTTGCAATTTT+TGG | - | chr4.4:14498437-14498456 | None:intergenic | 40.0% |
! | TTGAAAAGATAACGGTGCCA+CGG | + | chr4.4:14497832-14497851 | MS.gene08932:intron | 40.0% |
!! | CTTTCTTCCTTTGAGATGAC+AGG | - | chr4.4:14499556-14499575 | None:intergenic | 40.0% |
!! | GTTTGGATTGGCAATGTGTT+TGG | - | chr4.4:14497866-14497885 | None:intergenic | 40.0% |
!! | TAAGTGTGGCATTGGCTTTA+GGG | + | chr4.4:14499827-14499846 | MS.gene08932:CDS | 40.0% |
ACCAACAAAGAAAGCGAACC+CGG | - | chr4.4:14499680-14499699 | None:intergenic | 45.0% | |
ACCATCATTGCCAGAAGAAG+AGG | + | chr4.4:14499357-14499376 | MS.gene08932:CDS | 45.0% | |
ACCTCTTCTTCTGGCAATGA+TGG | - | chr4.4:14499361-14499380 | None:intergenic | 45.0% | |
AGACTTGAGGCTATTTGGGT+CGG | + | chr4.4:14498446-14498465 | MS.gene08932:CDS | 45.0% | |
CCAAACTCCTGTCATCTCAA+AGG | + | chr4.4:14499546-14499565 | MS.gene08932:CDS | 45.0% | |
CGAATTGAGGATGCATTGCT+TGG | + | chr4.4:14499412-14499431 | MS.gene08932:CDS | 45.0% | |
CTCAAAAGCTTGAACCTAGC+CGG | + | chr4.4:14497898-14497917 | MS.gene08932:intron | 45.0% | |
CTCTCAGCTGGTGAAAATAC+CGG | + | chr4.4:14499658-14499677 | MS.gene08932:CDS | 45.0% | |
GAAGGGTCCTATAGTAAGTG+TGG | + | chr4.4:14499813-14499832 | MS.gene08932:CDS | 45.0% | |
GCCAATGCCACACTTACTAT+AGG | - | chr4.4:14499823-14499842 | None:intergenic | 45.0% | |
GGTTCGCTTTCTTTGTTGGT+GGG | + | chr4.4:14499680-14499699 | MS.gene08932:CDS | 45.0% | |
TATGGTGGTACCTCTTCTTC+TGG | - | chr4.4:14499370-14499389 | None:intergenic | 45.0% | |
TCGAAAGTCGTATTGGAAGC+CGG | - | chr4.4:14499395-14499414 | None:intergenic | 45.0% | |
TCTCAGCTGGTGAAAATACC+GGG | + | chr4.4:14499659-14499678 | MS.gene08932:CDS | 45.0% | |
TGACATTGATATGCCTCTGG+TGG | - | chr4.4:14499082-14499101 | None:intergenic | 45.0% | |
TGATCGGTCATCAAACTCAC+TGG | - | chr4.4:14498347-14498366 | None:intergenic | 45.0% | |
TGGCAAAACAACTGATGGTC+TGG | - | chr4.4:14498129-14498148 | None:intergenic | 45.0% | |
TGTGCATACTTTCACGTCAG+AGG | - | chr4.4:14498153-14498172 | None:intergenic | 45.0% | |
TTATTGTCAGGCCTAGCAAG+TGG | + | chr4.4:14497610-14497629 | MS.gene08932:intron | 45.0% | |
! | CTCAAAGGAAGAAAGCATGG+AGG | + | chr4.4:14499561-14499580 | MS.gene08932:CDS | 45.0% |
! | GCTATTGTTGCAGAGGTATG+TGG | + | chr4.4:14499723-14499742 | MS.gene08932:CDS | 45.0% |
! | GCTTTCTTTGTTGGTGGGAT+TGG | + | chr4.4:14499685-14499704 | MS.gene08932:CDS | 45.0% |
! | GGTATTTTCACCAGCTGAGA+GGG | - | chr4.4:14499659-14499678 | None:intergenic | 45.0% |
! | TCAATGTCATTTCCCCCACT+AGG | + | chr4.4:14499093-14499112 | MS.gene08932:intron | 45.0% |
! | TTCTTTGTTGGTGGGATTGG+AGG | + | chr4.4:14499688-14499707 | MS.gene08932:CDS | 45.0% |
! | TTGTTGCAGAGGTATGTGGA+CGG | + | chr4.4:14499727-14499746 | MS.gene08932:CDS | 45.0% |
!! | ATTTGGGTCGGTGTTGATTC+AGG | + | chr4.4:14498458-14498477 | MS.gene08932:CDS | 45.0% |
!! | CCTTTGAGATGACAGGAGTT+TGG | - | chr4.4:14499549-14499568 | None:intergenic | 45.0% |
!! | CTTCTTCTTCCTCTAAGGTC+AGG | + | chr4.4:14499283-14499302 | MS.gene08932:intron | 45.0% |
!! | GTAAGTGTGGCATTGGCTTT+AGG | + | chr4.4:14499826-14499845 | MS.gene08932:CDS | 45.0% |
!! | TGAAAAGATAACGGTGCCAC+GGG | + | chr4.4:14497833-14497852 | MS.gene08932:intron | 45.0% |
!! | TTCCTCTAAGGTCAGGTCAA+TGG | + | chr4.4:14499290-14499309 | MS.gene08932:intron | 45.0% |
!! | AAAATATAAATAATATATGT+TGG | - | chr4.4:14499141-14499160 | None:intergenic | 5.0% |
!! | AAATATAAATAATATATGTT+GGG | - | chr4.4:14499140-14499159 | None:intergenic | 5.0% |
AACCTTGTGACTCAGCTCGA+AGG | + | chr4.4:14499472-14499491 | MS.gene08932:CDS | 50.0% | |
ACACTTGGGCAGAAGTTACC+TGG | + | chr4.4:14499985-14500004 | MS.gene08932:CDS | 50.0% | |
ACCGGGTTCGCTTTCTTTGT+TGG | + | chr4.4:14499676-14499695 | MS.gene08932:CDS | 50.0% | |
ACCTTGTGACTCAGCTCGAA+GGG | + | chr4.4:14499473-14499492 | MS.gene08932:CDS | 50.0% | |
AGGTCAGGTCAATGGAGACT+AGG | + | chr4.4:14499298-14499317 | MS.gene08932:intron | 50.0% | |
CATACTTTCACGTCAGAGGC+TGG | - | chr4.4:14498149-14498168 | None:intergenic | 50.0% | |
CTCCATTGACCTGACCTTAG+AGG | - | chr4.4:14499295-14499314 | None:intergenic | 50.0% | |
GAGGCTGGCAAAACAACTGA+TGG | - | chr4.4:14498134-14498153 | None:intergenic | 50.0% | |
GCATTGTGCAATTCCACCAG+AGG | + | chr4.4:14499066-14499085 | MS.gene08932:intron | 50.0% | |
GGGTTCGCTTTCTTTGTTGG+TGG | + | chr4.4:14499679-14499698 | MS.gene08932:CDS | 50.0% | |
TATTGGAAGCCGGTGTATGG+TGG | - | chr4.4:14499385-14499404 | None:intergenic | 50.0% | |
TCAATTGCTTCCCTCTCAGC+TGG | + | chr4.4:14499646-14499665 | MS.gene08932:CDS | 50.0% | |
TCGAGCTGAGTCACAAGGTT+AGG | - | chr4.4:14499472-14499491 | None:intergenic | 50.0% | |
TCGTATTGGAAGCCGGTGTA+TGG | - | chr4.4:14499388-14499407 | None:intergenic | 50.0% | |
! | CGGTATTTTCACCAGCTGAG+AGG | - | chr4.4:14499660-14499679 | None:intergenic | 50.0% |
! | GAGGATGCATTGCTTGGTGA+AGG | + | chr4.4:14499418-14499437 | MS.gene08932:CDS | 50.0% |
!! | GAAAAGATAACGGTGCCACG+GGG | + | chr4.4:14497834-14497853 | MS.gene08932:intron | 50.0% |
!! | GAAGAGGTACCACCATACAC+CGG | + | chr4.4:14499373-14499392 | MS.gene08932:CDS | 50.0% |
TCCCTTCGAGCTGAGTCACA+AGG | - | chr4.4:14499477-14499496 | None:intergenic | 55.0% | |
TGTGACTCAGCTCGAAGGGA+CGG | + | chr4.4:14499477-14499496 | MS.gene08932:CDS | 55.0% | |
TGTGTTTGGCGAAATCCCCG+TGG | - | chr4.4:14497852-14497871 | None:intergenic | 55.0% | |
!! | AGGTATGTGGACGGATTGCC+AGG | + | chr4.4:14499736-14499755 | MS.gene08932:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 14497016 | 14500017 | 14497016 | ID=MS.gene08932 |
chr4.4 | mRNA | 14497016 | 14500017 | 14497016 | ID=MS.gene08932.t1;Parent=MS.gene08932 |
chr4.4 | exon | 14497016 | 14497181 | 14497016 | ID=MS.gene08932.t1.exon1;Parent=MS.gene08932.t1 |
chr4.4 | CDS | 14497016 | 14497181 | 14497016 | ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1 |
chr4.4 | exon | 14498111 | 14498479 | 14498111 | ID=MS.gene08932.t1.exon2;Parent=MS.gene08932.t1 |
chr4.4 | CDS | 14498111 | 14498479 | 14498111 | ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1 |
chr4.4 | exon | 14499305 | 14500017 | 14499305 | ID=MS.gene08932.t1.exon3;Parent=MS.gene08932.t1 |
chr4.4 | CDS | 14499305 | 14500017 | 14499305 | ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1 |
Gene Sequence |
Protein sequence |