AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08932


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08932.t1 MTR_8g085620 94.471 416 22 1 1 415 73 488 0.0 772
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08932.t1 AT1G55280 47.355 397 180 10 20 408 14 389 1.24e-107 323
MS.gene08932.t1 AT1G55280 47.355 397 180 10 20 408 59 434 5.39e-107 323

Find 94 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAAGACTTGAGGCTATT+TGG 0.152892 4.4:+14498441 MS.gene08932:CDS
AAAATTAGTATCAGAGAATT+TGG 0.170887 4.4:-14497155 None:intergenic
ATAAATCCAAATCTTTATTC+AGG 0.239984 4.4:+14498213 MS.gene08932:CDS
GTAAGTGTGGCATTGGCTTT+AGG 0.249935 4.4:+14499826 MS.gene08932:CDS
CTTGACCCTGAATAAAGATT+TGG 0.283207 4.4:-14498219 None:intergenic
ATTTGGGTCGGTGTTGATTC+AGG 0.287536 4.4:+14498458 MS.gene08932:CDS
AACTTCTGCCCAAGTGTTAT+AGG 0.288096 4.4:-14499979 None:intergenic
ATTCCAACTATGATATCTTT+TGG 0.298685 4.4:-14499907 None:intergenic
ATTCATCAACAGAACCTCTT+TGG 0.299534 4.4:-14498397 None:intergenic
CACTGGTATTCTCTTCAATA+TGG 0.322369 4.4:-14498327 None:intergenic
CCTTTGAGATGACAGGAGTT+TGG 0.322539 4.4:-14499546 None:intergenic
TGCAAGACTTGAGGCTATTT+GGG 0.323891 4.4:+14498442 MS.gene08932:CDS
TAAGTGTGGCATTGGCTTTA+GGG 0.327988 4.4:+14499827 MS.gene08932:CDS
GCTTTCTTTGTTGGTGGGAT+TGG 0.336342 4.4:+14499685 MS.gene08932:CDS
ATTTGGATTTATCCTCCTTA+AGG 0.338464 4.4:-14498202 None:intergenic
ACCGATCATTCTACAGAATC+AGG 0.346191 4.4:+14498359 MS.gene08932:CDS
ACCGGGTTCGCTTTCTTTGT+TGG 0.369998 4.4:+14499676 MS.gene08932:CDS
AAATACTTTATCTTCCCTTA+AGG 0.370949 4.4:+14498187 MS.gene08932:CDS
TATGGTGGTACCTCTTCTTC+TGG 0.372818 4.4:-14499367 None:intergenic
ACCTCTTCTTCTGGCAATGA+TGG 0.373177 4.4:-14499358 None:intergenic
GGAACTGATGCATTGTTTAG+AGG 0.377564 4.4:+14499787 MS.gene08932:CDS
TTCAGAATTTATGACTGTTA+AGG 0.381614 4.4:-14499329 None:intergenic
TTTGGATTTATCCTCCTTAA+GGG 0.390006 4.4:-14498201 None:intergenic
ATTTGAGCCATATAAGTTGC+TGG 0.397282 4.4:-14498249 None:intergenic
TTGGTTACCAGCAACTTATA+TGG 0.399396 4.4:+14498242 MS.gene08932:CDS
CTTTCTTCCTTTGAGATGAC+AGG 0.409228 4.4:-14499553 None:intergenic
CCAATACGACTTTCGAATTG+AGG 0.415792 4.4:+14499399 MS.gene08932:CDS
TTCTTTGTTGGTGGGATTGG+AGG 0.421123 4.4:+14499688 MS.gene08932:CDS
AGGTATGTGGACGGATTGCC+AGG 0.423984 4.4:+14499736 MS.gene08932:CDS
CTATGCTTGATAGACGTAGA+TGG 0.426250 4.4:+14498299 MS.gene08932:CDS
CCTCAATTCGAAAGTCGTAT+TGG 0.435999 4.4:-14499399 None:intergenic
CTCTCAGCTGGTGAAAATAC+CGG 0.436324 4.4:+14499658 MS.gene08932:CDS
TGCATTGTTTAGAGGATTGA+AGG 0.450526 4.4:+14499795 MS.gene08932:CDS
TTCCTCTAAGGTCAGGTCAA+TGG 0.462389 4.4:+14499290 MS.gene08932:intron
TCGAGCTGAGTCACAAGGTT+AGG 0.465662 4.4:-14499469 None:intergenic
ACACCAAAAGATATCATAGT+TGG 0.465828 4.4:+14499904 MS.gene08932:CDS
TGGCAAAACAACTGATGGTC+TGG 0.469882 4.4:-14498126 None:intergenic
GGTTCGCTTTCTTTGTTGGT+GGG 0.473259 4.4:+14499680 MS.gene08932:CDS
GATATCATAGTTGGAATGAT+GGG 0.476033 4.4:+14499913 MS.gene08932:CDS
TCGTATTGGAAGCCGGTGTA+TGG 0.480131 4.4:-14499385 None:intergenic
TCCTATAGTAAGTGTGGCAT+TGG 0.484208 4.4:+14499819 MS.gene08932:CDS
AGATATCATAGTTGGAATGA+TGG 0.485907 4.4:+14499912 MS.gene08932:CDS
CGAATTGAGGATGCATTGCT+TGG 0.486399 4.4:+14499412 MS.gene08932:CDS
ATCTTTATTCAGGGTCAAGT+TGG 0.488774 4.4:+14498223 MS.gene08932:CDS
GCATTTAAGCCTATAACACT+TGG 0.489741 4.4:+14499970 MS.gene08932:CDS
TAAATCCAAATCTTTATTCA+GGG 0.498208 4.4:+14498214 MS.gene08932:CDS
TGTATCTGCTATTGTTGCAG+AGG 0.499344 4.4:+14499716 MS.gene08932:CDS
GGGTTCGCTTTCTTTGTTGG+TGG 0.499672 4.4:+14499679 MS.gene08932:CDS
AATATAAGTGACTTCAGTGC+TGG 0.501310 4.4:+14498269 MS.gene08932:CDS
GCCAATGCCACACTTACTAT+AGG 0.501445 4.4:-14499820 None:intergenic
TCAATTGCTTCCCTCTCAGC+TGG 0.512231 4.4:+14499646 MS.gene08932:CDS
ATGTAAAGTTTCTGTGGTGT+TGG 0.512933 4.4:+14499945 MS.gene08932:CDS
CATACTTTCACGTCAGAGGC+TGG 0.524216 4.4:-14498146 None:intergenic
CCCTGATTCTGTAGAATGAT+CGG 0.525561 4.4:-14498360 None:intergenic
ACCAACAAAGAAAGCGAACC+CGG 0.525652 4.4:-14499677 None:intergenic
ACTTGAAATTCTTCTAGAAG+AGG 0.530331 4.4:-14497104 None:intergenic
GATATACTTCATTTCCAAAG+AGG 0.531996 4.4:+14498383 MS.gene08932:CDS
TAACAGTCATAAATTCTGAA+TGG 0.537218 4.4:+14499332 MS.gene08932:CDS
ACACTTGGGCAGAAGTTACC+TGG 0.542605 4.4:+14499985 MS.gene08932:CDS
TACTTTATCTTCCCTTAAGG+AGG 0.546271 4.4:+14498190 MS.gene08932:CDS
TTTGTAGTGAAGTATAGCTC+AGG 0.553123 4.4:+14499859 MS.gene08932:CDS
AGACTTGAGGCTATTTGGGT+CGG 0.558381 4.4:+14498446 MS.gene08932:CDS
TCTTGCATGTAAAGTTTCTG+TGG 0.561151 4.4:+14499939 MS.gene08932:CDS
ACCATCATTGCCAGAAGAAG+AGG 0.565997 4.4:+14499357 MS.gene08932:CDS
GAGGCTGGCAAAACAACTGA+TGG 0.567913 4.4:-14498131 None:intergenic
TTGTGAATGAGTGAAGTTGA+AGG 0.568987 4.4:-14497046 None:intergenic
TGATCGGTCATCAAACTCAC+TGG 0.570085 4.4:-14498344 None:intergenic
GCTATTGTTGCAGAGGTATG+TGG 0.570298 4.4:+14499723 MS.gene08932:CDS
GCATTGTTTAGAGGATTGAA+GGG 0.571930 4.4:+14499796 MS.gene08932:CDS
AGGTCAGGTCAATGGAGACT+AGG 0.573348 4.4:+14499298 MS.gene08932:intron
ACCTTGTGACTCAGCTCGAA+GGG 0.573530 4.4:+14499473 MS.gene08932:CDS
TCGAAAGTCGTATTGGAAGC+CGG 0.576014 4.4:-14499392 None:intergenic
CATCTCAAAGGAAGAAAGCA+TGG 0.576259 4.4:+14499558 MS.gene08932:CDS
CCGATCATTCTACAGAATCA+GGG 0.579731 4.4:+14498360 MS.gene08932:CDS
CCAAACTCCTGTCATCTCAA+AGG 0.580577 4.4:+14499546 MS.gene08932:CDS
AACCTTGTGACTCAGCTCGA+AGG 0.583632 4.4:+14499472 MS.gene08932:CDS
AGGAACTGATCTATCCATGT+TGG 0.588578 4.4:+14499438 MS.gene08932:CDS
CATCTACGTCTATCAAGCAT+AGG 0.594306 4.4:-14498298 None:intergenic
TGTGACTCAGCTCGAAGGGA+CGG 0.596007 4.4:+14499477 MS.gene08932:CDS
TGTGCATACTTTCACGTCAG+AGG 0.601261 4.4:-14498150 None:intergenic
TCTCAGCTGGTGAAAATACC+GGG 0.602142 4.4:+14499659 MS.gene08932:CDS
TATTGGAAGCCGGTGTATGG+TGG 0.603889 4.4:-14499382 None:intergenic
AAATTAATCACAAGCAACAA+AGG 0.606917 4.4:+14499763 MS.gene08932:CDS
GAGGATGCATTGCTTGGTGA+AGG 0.609971 4.4:+14499418 MS.gene08932:CDS
CATTTAAGCCTATAACACTT+GGG 0.611508 4.4:+14499971 MS.gene08932:CDS
GAAGGGTCCTATAGTAAGTG+TGG 0.617641 4.4:+14499813 MS.gene08932:CDS
TCCCTTCGAGCTGAGTCACA+AGG 0.619102 4.4:-14499474 None:intergenic
CGATCATTCTACAGAATCAG+GGG 0.632486 4.4:+14498361 MS.gene08932:CDS
GTGTATAATTACATGTCACC+AGG 0.632874 4.4:-14500003 None:intergenic
GTTAGGTCTTAATTCCAACA+TGG 0.676496 4.4:-14499452 None:intergenic
TTAATCACAAGCAACAAAGG+AGG 0.678453 4.4:+14499766 MS.gene08932:CDS
TTGTTGCAGAGGTATGTGGA+CGG 0.680400 4.4:+14499727 MS.gene08932:CDS
GAAGAGGTACCACCATACAC+CGG 0.692574 4.4:+14499373 MS.gene08932:CDS
CTCAAAGGAAGAAAGCATGG+AGG 0.740445 4.4:+14499561 MS.gene08932:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAAAGTACTTTATT+TGG - chr4.4:14497995-14498014 None:intergenic 10.0%
!!! AAATATATGATTCAAAATTT+TGG + chr4.4:14497348-14497367 MS.gene08932:intron 10.0%
!!! AATATAGAAATTTAAAGTTT+TGG - chr4.4:14499177-14499196 None:intergenic 10.0%
!!! ATTAAAAATCTTAACTTTTA+AGG + chr4.4:14497214-14497233 MS.gene08932:intron 10.0%
!!! ATTCTAGTATATATTTTTTT+TGG + chr4.4:14498487-14498506 MS.gene08932:intron 10.0%
!! TTTCAAAAATAAAATATGTG+AGG - chr4.4:14497557-14497576 None:intergenic 15.0%
!!! ATTTGATTTTGTTAAAGTAT+TGG + chr4.4:14497527-14497546 MS.gene08932:intron 15.0%
!!! TTTTAAGCCATATATTTATA+TGG + chr4.4:14497404-14497423 MS.gene08932:intron 15.0%
!! AAAATTAGTATCAGAGAATT+TGG - chr4.4:14497158-14497177 None:intergenic 20.0%
!! AAATCAGCCATATAAATATA+TGG - chr4.4:14497414-14497433 None:intergenic 20.0%
!! AACTTTCTAAATTGTTAACA+GGG + chr4.4:14498692-14498711 MS.gene08932:intron 20.0%
!! ATAAATCCAAATCTTTATTC+AGG + chr4.4:14498213-14498232 MS.gene08932:CDS 20.0%
!! ATATATTTATATGGCTGATT+TGG + chr4.4:14497413-14497432 MS.gene08932:intron 20.0%
!! ATATTATTAACCATGATTTC+AGG - chr4.4:14498869-14498888 None:intergenic 20.0%
!! ATTTGGTTAATAGATATATC+AGG + chr4.4:14498743-14498762 MS.gene08932:intron 20.0%
!! GTATATTAAATATTTCAGTG+TGG + chr4.4:14497632-14497651 MS.gene08932:intron 20.0%
!! GTTAATAATATTCGAATTCA+TGG + chr4.4:14498878-14498897 MS.gene08932:intron 20.0%
!! TAAATCCAAATCTTTATTCA+GGG + chr4.4:14498214-14498233 MS.gene08932:CDS 20.0%
!! TAACATTTCTGTTTAAAAAC+TGG - chr4.4:14498639-14498658 None:intergenic 20.0%
!!! AAATTGTAACTTTTGTAACA+CGG - chr4.4:14497807-14497826 None:intergenic 20.0%
!!! AATTTTGGAGGTATTTTTAT+TGG + chr4.4:14497363-14497382 MS.gene08932:intron 20.0%
!!! ATAGAAATTTAAAGTTTTGG+AGG - chr4.4:14499174-14499193 None:intergenic 20.0%
!!! TACATATAACAAATGACTTT+TGG - chr4.4:14498026-14498045 None:intergenic 20.0%
!!! TATATGATTCAAAATTTTGG+AGG + chr4.4:14497351-14497370 MS.gene08932:intron 20.0%
!!! TCTTTTTTGAACAAACTTAT+AGG - chr4.4:14499505-14499524 None:intergenic 20.0%
!!! TTAACTGTTCTCTTTATTTT+GGG + chr4.4:14497259-14497278 MS.gene08932:intron 20.0%
!!! TTTAACTGTTCTCTTTATTT+TGG + chr4.4:14497258-14497277 MS.gene08932:intron 20.0%
!!! TTTAGAGTTTGAAAAGATAA+CGG + chr4.4:14497824-14497843 MS.gene08932:intron 20.0%
! AAATACTTTATCTTCCCTTA+AGG + chr4.4:14498187-14498206 MS.gene08932:CDS 25.0%
! AAATTAATCACAAGCAACAA+AGG + chr4.4:14499763-14499782 MS.gene08932:CDS 25.0%
! AAATTGTATTTCCTGACATT+TGG + chr4.4:14498605-14498624 MS.gene08932:intron 25.0%
! ATTTGAACACTTGAAAATCA+AGG - chr4.4:14498828-14498847 None:intergenic 25.0%
! ATTTGATGTTTGCCTATATA+TGG + chr4.4:14497453-14497472 MS.gene08932:intron 25.0%
! CAACTTTCTAAATTGTTAAC+AGG + chr4.4:14498691-14498710 MS.gene08932:intron 25.0%
! GAAGCTTGAAAAATTAATGT+TGG + chr4.4:14499226-14499245 MS.gene08932:intron 25.0%
! GAGTACTTAATGATTATAGT+TGG + chr4.4:14497656-14497675 MS.gene08932:intron 25.0%
! GTTAATCACGTTTAAATTTG+TGG - chr4.4:14498806-14498825 None:intergenic 25.0%
! TAACAGTCATAAATTCTGAA+TGG + chr4.4:14499332-14499351 MS.gene08932:CDS 25.0%
! TAACGAAGAAATTAAGAAGT+GGG - chr4.4:14497190-14497209 None:intergenic 25.0%
! TATTTAATATACCACTTGCT+AGG - chr4.4:14497624-14497643 None:intergenic 25.0%
! TCATCATATATGCCATATAT+AGG - chr4.4:14497468-14497487 None:intergenic 25.0%
! TGTTCAAATCTACATATAGT+TGG + chr4.4:14498839-14498858 MS.gene08932:intron 25.0%
! TGTTTGTAGTTATTATTGTC+AGG + chr4.4:14497598-14497617 MS.gene08932:intron 25.0%
! TTAACGAAGAAATTAAGAAG+TGG - chr4.4:14497191-14497210 None:intergenic 25.0%
! TTCAGAATTTATGACTGTTA+AGG - chr4.4:14499332-14499351 None:intergenic 25.0%
!! AAGGTTTAGTTTCACTTAAA+TGG + chr4.4:14497233-14497252 MS.gene08932:intron 25.0%
!! ATGTTGTTTGAACATCAATT+TGG - chr4.4:14499032-14499051 None:intergenic 25.0%
!! ATTCCAACTATGATATCTTT+TGG - chr4.4:14499910-14499929 None:intergenic 25.0%
!! TGATGTTCAAACAACATTTT+TGG + chr4.4:14499035-14499054 MS.gene08932:intron 25.0%
!! TGTTGTTTGAACATCAATTT+GGG - chr4.4:14499031-14499050 None:intergenic 25.0%
!! TTCTCTGATACTAATTTTCA+AGG + chr4.4:14497160-14497179 MS.gene08932:CDS 25.0%
!!! GTTGATGAATTCATTTTTGA+GGG + chr4.4:14498410-14498429 MS.gene08932:CDS 25.0%
!!! TGATTATAGTTGGTTAGTTT+TGG + chr4.4:14497666-14497685 MS.gene08932:intron 25.0%
!!! TGTTGATGAATTCATTTTTG+AGG + chr4.4:14498409-14498428 MS.gene08932:CDS 25.0%
AACGAAGAAATTAAGAAGTG+GGG - chr4.4:14497189-14497208 None:intergenic 30.0%
AAGACCATGCTAATATAAAC+CGG - chr4.4:14497920-14497939 None:intergenic 30.0%
ACACCAAAAGATATCATAGT+TGG + chr4.4:14499904-14499923 MS.gene08932:CDS 30.0%
ACAGCACTTCAAAAAATTTG+AGG - chr4.4:14498584-14498603 None:intergenic 30.0%
AGATATCATAGTTGGAATGA+TGG + chr4.4:14499912-14499931 MS.gene08932:CDS 30.0%
ATATAGGCAAACATCAAATC+AGG - chr4.4:14497452-14497471 None:intergenic 30.0%
ATTTGGATTTATCCTCCTTA+AGG - chr4.4:14498205-14498224 None:intergenic 30.0%
CAGCACTTCAAAAAATTTGA+GGG - chr4.4:14498583-14498602 None:intergenic 30.0%
CATTTAAGCCTATAACACTT+GGG + chr4.4:14499971-14499990 MS.gene08932:CDS 30.0%
GATATACTTCATTTCCAAAG+AGG + chr4.4:14498383-14498402 MS.gene08932:CDS 30.0%
GATATCATAGTTGGAATGAT+GGG + chr4.4:14499913-14499932 MS.gene08932:CDS 30.0%
TAAAGGGACTTCAAAATTGA+AGG - chr4.4:14498545-14498564 None:intergenic 30.0%
TTTGGATTTATCCTCCTTAA+GGG - chr4.4:14498204-14498223 None:intergenic 30.0%
! AAGCTCATTTGATGGTTAAT+AGG + chr4.4:14498907-14498926 MS.gene08932:intron 30.0%
! AATATATGATGGAATCCTAG+TGG - chr4.4:14499111-14499130 None:intergenic 30.0%
! ACTTGAAATTCTTCTAGAAG+AGG - chr4.4:14497107-14497126 None:intergenic 30.0%
! ATATATGATGGAATCCTAGT+GGG - chr4.4:14499110-14499129 None:intergenic 30.0%
! CAAACAACTTTGAAAAGAGT+AGG - chr4.4:14497584-14497603 None:intergenic 30.0%
! CTTGTGATTAATTTTGAACC+TGG - chr4.4:14499757-14499776 None:intergenic 30.0%
! GAAGACAGATGTTGATTAAA+GGG - chr4.4:14498561-14498580 None:intergenic 30.0%
!! GTTAAAAGAAGCGTTACATT+TGG + chr4.4:14498726-14498745 MS.gene08932:intron 30.0%
!!! TTGGAGGTATTTTTATTGGA+AGG + chr4.4:14497367-14497386 MS.gene08932:intron 30.0%
AAATGACATTGATATGCCTC+TGG - chr4.4:14499085-14499104 None:intergenic 35.0%
AATATAAGTGACTTCAGTGC+TGG + chr4.4:14498269-14498288 MS.gene08932:CDS 35.0%
AATATTTGCTCCAAGAAGCA+TGG - chr4.4:14497967-14497986 None:intergenic 35.0%
ATACTCTTCTTCTTCCTCTA+AGG + chr4.4:14499278-14499297 MS.gene08932:intron 35.0%
ATCTTTATTCAGGGTCAAGT+TGG + chr4.4:14498223-14498242 MS.gene08932:CDS 35.0%
ATGAATTATCGACACAAGCA+CGG - chr4.4:14498069-14498088 None:intergenic 35.0%
ATGTAAAGTTTCTGTGGTGT+TGG + chr4.4:14499945-14499964 MS.gene08932:CDS 35.0%
ATTCATCAACAGAACCTCTT+TGG - chr4.4:14498400-14498419 None:intergenic 35.0%
ATTTGAGCCATATAAGTTGC+TGG - chr4.4:14498252-14498271 None:intergenic 35.0%
CACTGGTATTCTCTTCAATA+TGG - chr4.4:14498330-14498349 None:intergenic 35.0%
CTTGACCCTGAATAAAGATT+TGG - chr4.4:14498222-14498241 None:intergenic 35.0%
GACTTCAAAATTGAAGGTCA+AGG - chr4.4:14498539-14498558 None:intergenic 35.0%
GCATTGTTTAGAGGATTGAA+GGG + chr4.4:14499796-14499815 MS.gene08932:CDS 35.0%
GCATTTAAGCCTATAACACT+TGG + chr4.4:14499970-14499989 MS.gene08932:CDS 35.0%
GGTTTATATTAGCATGGTCT+TGG + chr4.4:14497919-14497938 MS.gene08932:intron 35.0%
GTAGTTCAATGAGTAGTTAG+TGG - chr4.4:14498952-14498971 None:intergenic 35.0%
GTCGATAATTCATAGCTAAC+TGG + chr4.4:14498076-14498095 MS.gene08932:intron 35.0%
GTTAGGTCTTAATTCCAACA+TGG - chr4.4:14499455-14499474 None:intergenic 35.0%
TACTGAGTACATGTTTGGAT+TGG - chr4.4:14497878-14497897 None:intergenic 35.0%
TACTTTATCTTCCCTTAAGG+AGG + chr4.4:14498190-14498209 MS.gene08932:CDS 35.0%
TATGTAATCAGTCTCATGTC+TGG + chr4.4:14498040-14498059 MS.gene08932:intron 35.0%
TCCAAAAATTGCAAGACTTG+AGG + chr4.4:14498433-14498452 MS.gene08932:CDS 35.0%
TCTTGCATGTAAAGTTTCTG+TGG + chr4.4:14499939-14499958 MS.gene08932:CDS 35.0%
TGCATTGTTTAGAGGATTGA+AGG + chr4.4:14499795-14499814 MS.gene08932:CDS 35.0%
TTAATCACAAGCAACAAAGG+AGG + chr4.4:14499766-14499785 MS.gene08932:CDS 35.0%
TTAATCAGTTCCATGCTTCT+TGG + chr4.4:14497954-14497973 MS.gene08932:intron 35.0%
TTGGGACAGCTAATATATGA+TGG - chr4.4:14499122-14499141 None:intergenic 35.0%
TTGGTTACCAGCAACTTATA+TGG + chr4.4:14498242-14498261 MS.gene08932:CDS 35.0%
TTGTCACTGCATCAAACATA+AGG + chr4.4:14499196-14499215 MS.gene08932:intron 35.0%
TTGTGAATGAGTGAAGTTGA+AGG - chr4.4:14497049-14497068 None:intergenic 35.0%
TTTGTAGTGAAGTATAGCTC+AGG + chr4.4:14499859-14499878 MS.gene08932:CDS 35.0%
! GAAGGAATCATAGTTTTCAC+AGG - chr4.4:14497031-14497050 None:intergenic 35.0%
! GCTTCTTGGAGCAAATATTT+TGG + chr4.4:14497968-14497987 MS.gene08932:intron 35.0%
! GGAAGACAGATGTTGATTAA+AGG - chr4.4:14498562-14498581 None:intergenic 35.0%
! GGTATAACTCTGAAAATCTG+TGG - chr4.4:14498108-14498127 None:intergenic 35.0%
! GGTTAGTTAAGCTCATTTGA+TGG + chr4.4:14498899-14498918 MS.gene08932:intron 35.0%
! TATATGATGGAATCCTAGTG+GGG - chr4.4:14499109-14499128 None:intergenic 35.0%
!! GATGCTGTGCTGATATTTTT+CGG + chr4.4:14499619-14499638 MS.gene08932:CDS 35.0%
!! TTGAGTACTGAGTACATGTT+TGG - chr4.4:14497883-14497902 None:intergenic 35.0%
AACTTCTGCCCAAGTGTTAT+AGG - chr4.4:14499982-14500001 None:intergenic 40.0%
ACCGATCATTCTACAGAATC+AGG + chr4.4:14498359-14498378 MS.gene08932:CDS 40.0%
AGGAACTGATCTATCCATGT+TGG + chr4.4:14499438-14499457 MS.gene08932:CDS 40.0%
AGTTGGAACACCTGAAATCA+TGG + chr4.4:14498856-14498875 MS.gene08932:intron 40.0%
CATCTACGTCTATCAAGCAT+AGG - chr4.4:14498301-14498320 None:intergenic 40.0%
CATCTCAAAGGAAGAAAGCA+TGG + chr4.4:14499558-14499577 MS.gene08932:CDS 40.0%
CATGCTAATATAAACCGGCT+AGG - chr4.4:14497915-14497934 None:intergenic 40.0%
CCAATACGACTTTCGAATTG+AGG + chr4.4:14499399-14499418 MS.gene08932:CDS 40.0%
CCCTGATTCTGTAGAATGAT+CGG - chr4.4:14498363-14498382 None:intergenic 40.0%
CCGATCATTCTACAGAATCA+GGG + chr4.4:14498360-14498379 MS.gene08932:CDS 40.0%
CCTCAATTCGAAAGTCGTAT+TGG - chr4.4:14499402-14499421 None:intergenic 40.0%
CGATCATTCTACAGAATCAG+GGG + chr4.4:14498361-14498380 MS.gene08932:CDS 40.0%
CTATGCTTGATAGACGTAGA+TGG + chr4.4:14498299-14498318 MS.gene08932:CDS 40.0%
GGAACTGATGCATTGTTTAG+AGG + chr4.4:14499787-14499806 MS.gene08932:CDS 40.0%
GTTAGTGGTGAAGACAAGAT+CGG - chr4.4:14498937-14498956 None:intergenic 40.0%
TCCTATAGTAAGTGTGGCAT+TGG + chr4.4:14499819-14499838 MS.gene08932:CDS 40.0%
TGCAAGACTTGAGGCTATTT+GGG + chr4.4:14498442-14498461 MS.gene08932:CDS 40.0%
TGGAATGTGATCCAAATGTC+AGG - chr4.4:14498619-14498638 None:intergenic 40.0%
TGTATCTGCTATTGTTGCAG+AGG + chr4.4:14499716-14499735 MS.gene08932:CDS 40.0%
TTGCAAGACTTGAGGCTATT+TGG + chr4.4:14498441-14498460 MS.gene08932:CDS 40.0%
! ATATGATGGAATCCTAGTGG+GGG - chr4.4:14499108-14499127 None:intergenic 40.0%
! ATTAGCATGGTCTTGGTAGA+TGG + chr4.4:14497926-14497945 MS.gene08932:intron 40.0%
! CTAGCCGGTTTATATTAGCA+TGG + chr4.4:14497913-14497932 MS.gene08932:intron 40.0%
! GCCTCAAGTCTTGCAATTTT+TGG - chr4.4:14498437-14498456 None:intergenic 40.0%
! TTGAAAAGATAACGGTGCCA+CGG + chr4.4:14497832-14497851 MS.gene08932:intron 40.0%
!! CTTTCTTCCTTTGAGATGAC+AGG - chr4.4:14499556-14499575 None:intergenic 40.0%
!! GTTTGGATTGGCAATGTGTT+TGG - chr4.4:14497866-14497885 None:intergenic 40.0%
!! TAAGTGTGGCATTGGCTTTA+GGG + chr4.4:14499827-14499846 MS.gene08932:CDS 40.0%
ACCAACAAAGAAAGCGAACC+CGG - chr4.4:14499680-14499699 None:intergenic 45.0%
ACCATCATTGCCAGAAGAAG+AGG + chr4.4:14499357-14499376 MS.gene08932:CDS 45.0%
ACCTCTTCTTCTGGCAATGA+TGG - chr4.4:14499361-14499380 None:intergenic 45.0%
AGACTTGAGGCTATTTGGGT+CGG + chr4.4:14498446-14498465 MS.gene08932:CDS 45.0%
CCAAACTCCTGTCATCTCAA+AGG + chr4.4:14499546-14499565 MS.gene08932:CDS 45.0%
CGAATTGAGGATGCATTGCT+TGG + chr4.4:14499412-14499431 MS.gene08932:CDS 45.0%
CTCAAAAGCTTGAACCTAGC+CGG + chr4.4:14497898-14497917 MS.gene08932:intron 45.0%
CTCTCAGCTGGTGAAAATAC+CGG + chr4.4:14499658-14499677 MS.gene08932:CDS 45.0%
GAAGGGTCCTATAGTAAGTG+TGG + chr4.4:14499813-14499832 MS.gene08932:CDS 45.0%
GCCAATGCCACACTTACTAT+AGG - chr4.4:14499823-14499842 None:intergenic 45.0%
GGTTCGCTTTCTTTGTTGGT+GGG + chr4.4:14499680-14499699 MS.gene08932:CDS 45.0%
TATGGTGGTACCTCTTCTTC+TGG - chr4.4:14499370-14499389 None:intergenic 45.0%
TCGAAAGTCGTATTGGAAGC+CGG - chr4.4:14499395-14499414 None:intergenic 45.0%
TCTCAGCTGGTGAAAATACC+GGG + chr4.4:14499659-14499678 MS.gene08932:CDS 45.0%
TGACATTGATATGCCTCTGG+TGG - chr4.4:14499082-14499101 None:intergenic 45.0%
TGATCGGTCATCAAACTCAC+TGG - chr4.4:14498347-14498366 None:intergenic 45.0%
TGGCAAAACAACTGATGGTC+TGG - chr4.4:14498129-14498148 None:intergenic 45.0%
TGTGCATACTTTCACGTCAG+AGG - chr4.4:14498153-14498172 None:intergenic 45.0%
TTATTGTCAGGCCTAGCAAG+TGG + chr4.4:14497610-14497629 MS.gene08932:intron 45.0%
! CTCAAAGGAAGAAAGCATGG+AGG + chr4.4:14499561-14499580 MS.gene08932:CDS 45.0%
! GCTATTGTTGCAGAGGTATG+TGG + chr4.4:14499723-14499742 MS.gene08932:CDS 45.0%
! GCTTTCTTTGTTGGTGGGAT+TGG + chr4.4:14499685-14499704 MS.gene08932:CDS 45.0%
! GGTATTTTCACCAGCTGAGA+GGG - chr4.4:14499659-14499678 None:intergenic 45.0%
! TCAATGTCATTTCCCCCACT+AGG + chr4.4:14499093-14499112 MS.gene08932:intron 45.0%
! TTCTTTGTTGGTGGGATTGG+AGG + chr4.4:14499688-14499707 MS.gene08932:CDS 45.0%
! TTGTTGCAGAGGTATGTGGA+CGG + chr4.4:14499727-14499746 MS.gene08932:CDS 45.0%
!! ATTTGGGTCGGTGTTGATTC+AGG + chr4.4:14498458-14498477 MS.gene08932:CDS 45.0%
!! CCTTTGAGATGACAGGAGTT+TGG - chr4.4:14499549-14499568 None:intergenic 45.0%
!! CTTCTTCTTCCTCTAAGGTC+AGG + chr4.4:14499283-14499302 MS.gene08932:intron 45.0%
!! GTAAGTGTGGCATTGGCTTT+AGG + chr4.4:14499826-14499845 MS.gene08932:CDS 45.0%
!! TGAAAAGATAACGGTGCCAC+GGG + chr4.4:14497833-14497852 MS.gene08932:intron 45.0%
!! TTCCTCTAAGGTCAGGTCAA+TGG + chr4.4:14499290-14499309 MS.gene08932:intron 45.0%
!! AAAATATAAATAATATATGT+TGG - chr4.4:14499141-14499160 None:intergenic 5.0%
!! AAATATAAATAATATATGTT+GGG - chr4.4:14499140-14499159 None:intergenic 5.0%
AACCTTGTGACTCAGCTCGA+AGG + chr4.4:14499472-14499491 MS.gene08932:CDS 50.0%
ACACTTGGGCAGAAGTTACC+TGG + chr4.4:14499985-14500004 MS.gene08932:CDS 50.0%
ACCGGGTTCGCTTTCTTTGT+TGG + chr4.4:14499676-14499695 MS.gene08932:CDS 50.0%
ACCTTGTGACTCAGCTCGAA+GGG + chr4.4:14499473-14499492 MS.gene08932:CDS 50.0%
AGGTCAGGTCAATGGAGACT+AGG + chr4.4:14499298-14499317 MS.gene08932:intron 50.0%
CATACTTTCACGTCAGAGGC+TGG - chr4.4:14498149-14498168 None:intergenic 50.0%
CTCCATTGACCTGACCTTAG+AGG - chr4.4:14499295-14499314 None:intergenic 50.0%
GAGGCTGGCAAAACAACTGA+TGG - chr4.4:14498134-14498153 None:intergenic 50.0%
GCATTGTGCAATTCCACCAG+AGG + chr4.4:14499066-14499085 MS.gene08932:intron 50.0%
GGGTTCGCTTTCTTTGTTGG+TGG + chr4.4:14499679-14499698 MS.gene08932:CDS 50.0%
TATTGGAAGCCGGTGTATGG+TGG - chr4.4:14499385-14499404 None:intergenic 50.0%
TCAATTGCTTCCCTCTCAGC+TGG + chr4.4:14499646-14499665 MS.gene08932:CDS 50.0%
TCGAGCTGAGTCACAAGGTT+AGG - chr4.4:14499472-14499491 None:intergenic 50.0%
TCGTATTGGAAGCCGGTGTA+TGG - chr4.4:14499388-14499407 None:intergenic 50.0%
! CGGTATTTTCACCAGCTGAG+AGG - chr4.4:14499660-14499679 None:intergenic 50.0%
! GAGGATGCATTGCTTGGTGA+AGG + chr4.4:14499418-14499437 MS.gene08932:CDS 50.0%
!! GAAAAGATAACGGTGCCACG+GGG + chr4.4:14497834-14497853 MS.gene08932:intron 50.0%
!! GAAGAGGTACCACCATACAC+CGG + chr4.4:14499373-14499392 MS.gene08932:CDS 50.0%
TCCCTTCGAGCTGAGTCACA+AGG - chr4.4:14499477-14499496 None:intergenic 55.0%
TGTGACTCAGCTCGAAGGGA+CGG + chr4.4:14499477-14499496 MS.gene08932:CDS 55.0%
TGTGTTTGGCGAAATCCCCG+TGG - chr4.4:14497852-14497871 None:intergenic 55.0%
!! AGGTATGTGGACGGATTGCC+AGG + chr4.4:14499736-14499755 MS.gene08932:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 14497016 14500017 14497016 ID=MS.gene08932
chr4.4 mRNA 14497016 14500017 14497016 ID=MS.gene08932.t1;Parent=MS.gene08932
chr4.4 exon 14497016 14497181 14497016 ID=MS.gene08932.t1.exon1;Parent=MS.gene08932.t1
chr4.4 CDS 14497016 14497181 14497016 ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1
chr4.4 exon 14498111 14498479 14498111 ID=MS.gene08932.t1.exon2;Parent=MS.gene08932.t1
chr4.4 CDS 14498111 14498479 14498111 ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1
chr4.4 exon 14499305 14500017 14499305 ID=MS.gene08932.t1.exon3;Parent=MS.gene08932.t1
chr4.4 CDS 14499305 14500017 14499305 ID=cds.MS.gene08932.t1;Parent=MS.gene08932.t1
Gene Sequence

>MS.gene08932

ATGGAGACAATTCCTGTGAAAACTATGATTCCTTCAACTTCACTCATTCACAATCATGCTTTCAAAAGAAAATCAACAACACACACAACCTCTTCTAGAAGAATTTCAAGTTCAAGACATGTACGCTTTTCTATTCGTGCCAAATTCTCTGATACTAATTTTCAAGGTAACCCCACTTCTTAATTTCTTCGTTAAACTATTAAAAATCTTAACTTTTAAGGTTTAGTTTCACTTAAATGGATTTTAACTGTTCTCTTTATTTTGGGATTGATTTTAATATATGAATTTATTGTGATATTATATTAATTGAAGAGAAAAAATAAAACAAAATTAAATATATGATTCAAAATTTTGGAGGTATTTTTATTGGAAGGAAGCTTTTTAAGCTTTTTAAGCCATATATTTATATGGCTGATTTGGTTTAACACTTTATCCTGATTTGATGTTTGCCTATATATGGCATATATGATGATTATGAAACTTAAATTATCATAACTATATGAATTATGTCATTTGATTTTGTTAAAGTATTGGTCATCCTCACATATTTTATTTTTGAAAGAAACCTACTCTTTTCAAAGTTGTTTGTAGTTATTATTGTCAGGCCTAGCAAGTGGTATATTAAATATTTCAGTGTGGTGAGTACTTAATGATTATAGTTGGTTAGTTTTGGCTGTCAAAGTTGTTGTTTGTGTCATCTGATTTGTGTATCTACAACTTAGTTTATGTAAAAGTACAAAATTTATACTTGCTTTGTCTAGTGACTTTGACAGAATCACAGTAGACTACCGTGTTACAAAAGTTACAATTTAGAGTTTGAAAAGATAACGGTGCCACGGGGATTTCGCCAAACACATTGCCAATCCAAACATGTACTCAGTACTCAAAAGCTTGAACCTAGCCGGTTTATATTAGCATGGTCTTGGTAGATGGCAGAATTAATCAGTTCCATGCTTCTTGGAGCAAATATTTTGGACCAAATAAAGTACTTTTATTTTTTAATTTCACCAAAAGTCATTTGTTATATGTAATCAGTCTCATGTCTGGTGTCCGTGCTTGTGTCGATAATTCATAGCTAACTGGTTTGTGCCACAGATTTTCAGAGTTATACCAGACCATCAGTTGTTTTGCCAGCCTCTGACGTGAAAGTATGCACAGATACATCATTAGAAAATACTTTATCTTCCCTTAAGGAGGATAAATCCAAATCTTTATTCAGGGTCAAGTTGGTTACCAGCAACTTATATGGCTCAAATATAAGTGACTTCAGTGCTGGAATTCTCCTATGCTTGATAGACGTAGATGGAAATTCCATATTGAAGAGAATACCAGTGAGTTTGATGACCGATCATTCTACAGAATCAGGGGATATACTTCATTTCCAAAGAGGTTCTGTTGATGAATTCATTTTTGAGGGTCCAAAAATTGCAAGACTTGAGGCTATTTGGGTCGGTGTTGATTCAGGTAAGTTATTCTAGTATATATTTTTTTTGGAGTAATTAAGATTCAGTAGACATCATCCTTGACCTTCAATTTTGAAGTCCCTTTAATCAACATCTGTCTTCCCTCAAATTTTTTGAAGTGCTGTGAAATTGTATTTCCTGACATTTGGATCACATTCCAGTTTTTAAACAGAAATGTTATTTGAGTATCAACTTGAGACAACTAAATTCGACAACTTTCTAAATTGTTAACAGGGTTCGCACGAATGTTAAAAGAAGCGTTACATTTGGTTAATAGATATATCAGGTGTTGCAACTAAAAACTTATCTACTAAACTTCACTAACCACAAATTTAAACGTGATTAACCTTGATTTTCAAGTGTTCAAATCTACATATAGTTGGAACACCTGAAATCATGGTTAATAATATTCGAATTCATGGTTAGTTAAGCTCATTTGATGGTTAATAGGTTTTCCGATCTTGTCTTCACCACTAACTACTCATTGAACTACATTAAGCATGTATGTGAATTGCGTTAATAATTTAAATAGTTGTCGAATTTTGTTGTCCCAAATTGATGTTCAAACAACATTTTTGGTTTTAAAAGCATTGTGCAATTCCACCAGAGGCATATCAATGTCATTTCCCCCACTAGGATTCCATCATATATTAGCTGTCCCAACATATATTATTTATATTTTAAGAGTATTACCTCCAAAACTTTAAATTTCTATATTTGTCACTGCATCAAACATAAGGTCTTGATGAAGCTTGAAAAATTAATGTTGGCTTGATCAATCGAGTTTATCTATTTAACAATACTCTTCTTCTTCCTCTAAGGTCAGGTCAATGGAGACTAGGAAATATCTCCTTAACAGTCATAAATTCTGAATGGCAACCATCATTGCCAGAAGAAGAGGTACCACCATACACCGGCTTCCAATACGACTTTCGAATTGAGGATGCATTGCTTGGTGAAGGAACTGATCTATCCATGTTGGAATTAAGACCTAACCTTGTGACTCAGCTCGAAGGGACGGATCCTATAAGTTTGTTCAAAAAAGAACTTTATGACAGTACATTGCTCCAAACTCCTGTCATCTCAAAGGAAGAAAGCATGGAGGAATACACAAATTTGAAATTCTCATTGCTATTTTATGATGCTGTGCTGATATTTTTCGGCACATCAATTGCTTCCCTCTCAGCTGGTGAAAATACCGGGTTCGCTTTCTTTGTTGGTGGGATTGGAGGCTTCTTGTATCTGCTATTGTTGCAGAGGTATGTGGACGGATTGCCAGGTTCAAAATTAATCACAAGCAACAAAGGAGGAACTGATGCATTGTTTAGAGGATTGAAGGGTCCTATAGTAAGTGTGGCATTGGCTTTAGGGTTTGCTGTATTTGTAGTGAAGTATAGCTCAGGAGATGATTTTGAAGTGTTCTTAACACCAAAAGATATCATAGTTGGAATGATGGGATTTCTTGCATGTAAAGTTTCTGTGGTGTTGGCTGCATTTAAGCCTATAACACTTGGGCAGAAGTTACCTGGTGACATGTAA

Protein sequence

>MS.gene08932.t1

METIPVKTMIPSTSLIHNHAFKRKSTTHTTSSRRISSSRHVRFSIRAKFSDTNFQDFQSYTRPSVVLPASDVKVCTDTSLENTLSSLKEDKSKSLFRVKLVTSNLYGSNISDFSAGILLCLIDVDGNSILKRIPVSLMTDHSTESGDILHFQRGSVDEFIFEGPKIARLEAIWVGVDSGQWRLGNISLTVINSEWQPSLPEEEVPPYTGFQYDFRIEDALLGEGTDLSMLELRPNLVTQLEGTDPISLFKKELYDSTLLQTPVISKEESMEEYTNLKFSLLFYDAVLIFFGTSIASLSAGENTGFAFFVGGIGGFLYLLLLQRYVDGLPGSKLITSNKGGTDALFRGLKGPIVSVALALGFAVFVVKYSSGDDFEVFLTPKDIIVGMMGFLACKVSVVLAAFKPITLGQKLPGDM