Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20939.t1 | XP_004495837.1 | 87.5 | 295 | 28 | 4 | 1 | 292 | 7 | 295 | 5.60E-125 | 457.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20939.t1 | F4HVZ5 | 71.9 | 253 | 57 | 5 | 44 | 292 | 36 | 278 | 1.7e-82 | 307.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20939.t1 | A0A1S2XX43 | 87.5 | 295 | 28 | 4 | 1 | 292 | 7 | 295 | 4.1e-125 | 457.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene20939 | 0.800257 | 1.57E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene20939 | 0.83541 | 1.71E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene20939 | -0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene20939 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene20939 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene20939 | 0.805874 | 1.08E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene20939 | 0.802079 | 6.65E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene20939 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene052858 | MS.gene20939 | 0.80246 | 5.55E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene20939 | 0.818404 | 2.00E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene20939 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene20939 | 0.813328 | 2.71E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene20939 | 0.808353 | 3.23E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene20939 | 0.803839 | 2.88E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene20939 | 0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene20939 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene20939 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene20939 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene20939 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene20939 | 0.809129 | 2.20E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene20939 | 0.815806 | 7.66E-52 | -1.69E-46 |
| MS.gene058126 | MS.gene20939 | 0.800462 | 1.43E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene20939 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene20939 | 0.818022 | 2.43E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene20939 | 0.802346 | 5.86E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene20939 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene20939 | 0.823204 | 1.57E-53 | -1.69E-46 |
| MS.gene060296 | MS.gene20939 | 0.808842 | 2.54E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene20939 | 0.826623 | 2.45E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene20939 | 0.837577 | 4.79E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene20939 | 0.825446 | 4.67E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene20939 | 0.824582 | 7.47E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene20939 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene20939 | 0.811794 | 5.86E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20939.t1 | MTR_1g085470 | 96.575 | 292 | 9 | 1 | 1 | 292 | 1 | 291 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20939.t1 | AT1G02330 | 67.347 | 294 | 69 | 7 | 9 | 292 | 2 | 278 | 1.55e-119 | 344 |
Find 60 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTAAAGTGAGGGTTGC+AGG | 0.294279 | 1.3:+60691172 | None:intergenic |
| TAAGGATGACCTTGTTCTTC+AGG | 0.316218 | 1.3:-60691071 | MS.gene20939:CDS |
| TGCTCAAGAAACCGCTGTTT+TGG | 0.329944 | 1.3:-60691041 | MS.gene20939:CDS |
| TATGAGAAAGCATACTCTAT+TGG | 0.360659 | 1.3:+60690130 | None:intergenic |
| TGAAACGCTCTAACATGAAT+TGG | 0.363110 | 1.3:+60687035 | None:intergenic |
| CCTTCTTTCGCTTTCGTCAT+CGG | 0.368584 | 1.3:+60691336 | None:intergenic |
| CTGATTATTTCCAGCGTGGC+AGG | 0.375156 | 1.3:-60689590 | MS.gene20939:CDS |
| ATACTAACTTTAAGATGGTC+AGG | 0.382449 | 1.3:+60690814 | None:intergenic |
| CGTTGTTTGGTTGAGATTGT+GGG | 0.394815 | 1.3:+60691362 | None:intergenic |
| AACGAGAACGTCACCGTGTT+CGG | 0.398546 | 1.3:-60687009 | MS.gene20939:CDS |
| GCCTGCCTCTGTACTGCTCC+AGG | 0.400132 | 1.3:+60687067 | None:intergenic |
| TAATCAGCACTGTAACTTGA+TGG | 0.414773 | 1.3:+60689606 | None:intergenic |
| AAACAACGAGAAAGAAAATC+AGG | 0.418985 | 1.3:-60691199 | MS.gene20939:CDS |
| GTTCTGTTGGAGTTCTCTTT+CGG | 0.419541 | 1.3:+60691398 | None:intergenic |
| TCAATGAACTCATACATATT+GGG | 0.420263 | 1.3:+60691010 | None:intergenic |
| TCGTTGTTTGGTTGAGATTG+TGG | 0.420914 | 1.3:+60691361 | None:intergenic |
| CGGTGGCGATGGAGCTGATA+AGG | 0.421129 | 1.3:-60691089 | MS.gene20939:CDS |
| AGCTCTACACAATGGACAAC+TGG | 0.421345 | 1.3:-60690172 | MS.gene20939:CDS |
| CTTCTATCTTTGTACAGCTC+AGG | 0.422118 | 1.3:+60687142 | None:intergenic |
| TCGTCATCGGAATCGTTGTT+TGG | 0.423184 | 1.3:+60691349 | None:intergenic |
| GCTAAACCGCTGGAAATTCC+AGG | 0.423336 | 1.3:+60691142 | None:intergenic |
| TTGGTTGAGATTGTGGGGAT+TGG | 0.427832 | 1.3:+60691368 | None:intergenic |
| GTACAAAGATAGAAGTCAAC+AGG | 0.449055 | 1.3:-60687134 | MS.gene20939:CDS |
| GATTGGTCGCATTGTTCTGT+TGG | 0.452770 | 1.3:+60691385 | None:intergenic |
| CCGATGACGAAAGCGAAAGA+AGG | 0.459868 | 1.3:-60691336 | MS.gene20939:intron |
| AACGATACCGGCGGTGGCGA+TGG | 0.468393 | 1.3:-60691100 | MS.gene20939:CDS |
| TCTGCAGGAAAAGAGGCTTA+TGG | 0.474876 | 1.3:-60689658 | MS.gene20939:CDS |
| TGCTCCAGGAGCATCACTGC+TGG | 0.497726 | 1.3:+60687081 | None:intergenic |
| AAAAGCTTCTGCAGGAAAAG+AGG | 0.514660 | 1.3:-60689665 | MS.gene20939:CDS |
| AACGTGTAACAGATTAGCAT+TGG | 0.518558 | 1.3:-60691242 | MS.gene20939:intron |
| TCCTGGAGCAGTACAGAGGC+AGG | 0.521841 | 1.3:-60687068 | MS.gene20939:CDS |
| GGCTTTAGCAGCTAAACCGC+TGG | 0.529856 | 1.3:+60691132 | None:intergenic |
| AATCAGCACTGTAACTTGAT+GGG | 0.531105 | 1.3:+60689607 | None:intergenic |
| CAGGGTTAAGTATATTGAGC+AGG | 0.535585 | 1.3:-60690926 | MS.gene20939:CDS |
| ATCAGCTCCATCGCCACCGC+CGG | 0.538056 | 1.3:+60691093 | None:intergenic |
| GAGTCCAGCAGTGATGCTCC+TGG | 0.538444 | 1.3:-60687085 | MS.gene20939:CDS |
| ACTTTACAGCAATCTCAGCC+TGG | 0.538622 | 1.3:-60691160 | MS.gene20939:CDS |
| CGAAACAAGAGAAGCCGCGA+AGG | 0.554102 | 1.3:-60691429 | MS.gene20939:CDS |
| GCCGTTGATAAGAACGATAC+CGG | 0.554595 | 1.3:-60691112 | MS.gene20939:CDS |
| TAACATGAATTGGTCTGTTG+CGG | 0.559565 | 1.3:+60687045 | None:intergenic |
| GCCGGTATCGTTCTTATCAA+CGG | 0.559897 | 1.3:+60691111 | None:intergenic |
| TGATTATTTCCAGCGTGGCA+GGG | 0.563700 | 1.3:-60689589 | MS.gene20939:CDS |
| GCTGTAAAGTGAGGGTTGCA+GGG | 0.580348 | 1.3:+60691173 | None:intergenic |
| ATTTATGCTATCGCCGAACA+CGG | 0.586188 | 1.3:+60686996 | None:intergenic |
| GCAGGAAAAGAGGCTTATGG+TGG | 0.595924 | 1.3:-60689655 | MS.gene20939:CDS |
| CAAAAGTATCCTGAAGAACA+AGG | 0.601579 | 1.3:+60691062 | None:intergenic |
| TACTAACTTTAAGATGGTCA+GGG | 0.607641 | 1.3:+60690815 | None:intergenic |
| GATAAGAACGATACCGGCGG+TGG | 0.618450 | 1.3:-60691106 | MS.gene20939:CDS |
| CAGCATAATCCCTGCCACGC+TGG | 0.625209 | 1.3:+60689580 | None:intergenic |
| GTTGTTTGGTTGAGATTGTG+GGG | 0.639164 | 1.3:+60691363 | None:intergenic |
| CAGGAATTAGCTAAGAAGAG+AGG | 0.642991 | 1.3:-60690907 | MS.gene20939:CDS |
| GCTGAGATTGCTGTAAAGTG+AGG | 0.649266 | 1.3:+60691164 | None:intergenic |
| ATGCTCCTGGAGCAGTACAG+AGG | 0.655636 | 1.3:-60687072 | MS.gene20939:CDS |
| CAGAAGAAAGCTCTACACAA+TGG | 0.662331 | 1.3:-60690180 | MS.gene20939:CDS |
| GGGATCTTCATCCAAAACAG+CGG | 0.665742 | 1.3:+60691030 | None:intergenic |
| CAGGAAAAGAGGCTTATGGT+GGG | 0.669327 | 1.3:-60689654 | MS.gene20939:CDS |
| CTGAGATTGCTGTAAAGTGA+GGG | 0.680238 | 1.3:+60691165 | None:intergenic |
| TCTCAGCCTGGAATTTCCAG+CGG | 0.683981 | 1.3:-60691148 | MS.gene20939:CDS |
| AGTGCTGATTATTTCCAGCG+TGG | 0.743724 | 1.3:-60689594 | MS.gene20939:CDS |
| GTTGATAAGAACGATACCGG+CGG | 0.760815 | 1.3:-60691109 | MS.gene20939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTATAATTAGAATTTTTT+TGG | - | chr1.3:60688146-60688165 | MS.gene20939:intron | 10.0% |
| !!! | TTTAATTATTTTTTCTAACT+AGG | + | chr1.3:60690081-60690100 | None:intergenic | 10.0% |
| !! | TAATATTTCTCTATTATAAG+TGG | - | chr1.3:60688169-60688188 | MS.gene20939:intron | 15.0% |
| !! | TTGTCAATTATTTATTAGTT+GGG | - | chr1.3:60690132-60690151 | MS.gene20939:intron | 15.0% |
| !! | TTTCATAAAGAATATAAATG+AGG | + | chr1.3:60688957-60688976 | None:intergenic | 15.0% |
| !!! | AAAAAATACTAACTTTAAGA+TGG | + | chr1.3:60687636-60687655 | None:intergenic | 15.0% |
| !!! | AATTCATATAATTTGTAGAA+CGG | + | chr1.3:60689684-60689703 | None:intergenic | 15.0% |
| !!! | ACGTTAATTTGATTAATTAT+TGG | + | chr1.3:60687185-60687204 | None:intergenic | 15.0% |
| !!! | ACTTCATAAATTTTACATTA+GGG | - | chr1.3:60687147-60687166 | MS.gene20939:CDS | 15.0% |
| !!! | ATTTGGTAAAAACTATTTTA+GGG | + | chr1.3:60690414-60690433 | None:intergenic | 15.0% |
| !!! | GTAATAATTGTCATTTTTTT+TGG | - | chr1.3:60689516-60689535 | MS.gene20939:intron | 15.0% |
| !!! | TATTTGGTAAAAACTATTTT+AGG | + | chr1.3:60690415-60690434 | None:intergenic | 15.0% |
| !!! | TTCAATTTTGAATGAAAAAA+TGG | - | chr1.3:60690811-60690830 | MS.gene20939:intron | 15.0% |
| !!! | TTTTAAATGTTTCTTTTCTT+AGG | - | chr1.3:60690945-60690964 | MS.gene20939:intron | 15.0% |
| !!! | TTTTTTTTTTATACATCACA+TGG | - | chr1.3:60689142-60689161 | MS.gene20939:intron | 15.0% |
| !! | AAAGAATATAAATGAGGTAA+AGG | + | chr1.3:60688951-60688970 | None:intergenic | 20.0% |
| !! | AATCTATAATGAAAGAATCA+GGG | + | chr1.3:60688913-60688932 | None:intergenic | 20.0% |
| !! | ATTTGGTTAACAGTTTAATA+AGG | + | chr1.3:60690440-60690459 | None:intergenic | 20.0% |
| !! | GTTGTCAATTATTTATTAGT+TGG | - | chr1.3:60690131-60690150 | MS.gene20939:intron | 20.0% |
| !! | TAATCTATAATGAAAGAATC+AGG | + | chr1.3:60688914-60688933 | None:intergenic | 20.0% |
| !! | TAGAAGAAAACAATTGTAAT+AGG | - | chr1.3:60690156-60690175 | MS.gene20939:CDS | 20.0% |
| !! | TTAAAAAACAAAGATACCAA+TGG | + | chr1.3:60688602-60688621 | None:intergenic | 20.0% |
| !!! | ATATTCTTTAGAATACATTG+TGG | - | chr1.3:60690200-60690219 | MS.gene20939:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+AGG | + | chr1.3:60687777-60687796 | None:intergenic | 20.0% |
| !!! | ATTCATTGATAACTAAATCA+AGG | + | chr1.3:60691174-60691193 | None:intergenic | 20.0% |
| !!! | CACTTCATAAATTTTACATT+AGG | - | chr1.3:60687146-60687165 | MS.gene20939:CDS | 20.0% |
| !!! | CTTTATTTTATCTTTTGTTG+TGG | + | chr1.3:60687820-60687839 | None:intergenic | 20.0% |
| !!! | GTTTGTTAAAAAAAAACACA+AGG | + | chr1.3:60691067-60691086 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+GGG | + | chr1.3:60687776-60687795 | None:intergenic | 20.0% |
| !!! | TTTCATTTTTCTGTTTGTTT+GGG | + | chr1.3:60690874-60690893 | None:intergenic | 20.0% |
| ! | AAAAATCAGTGATGTCTTAA+TGG | - | chr1.3:60688696-60688715 | MS.gene20939:intron | 25.0% |
| ! | AAAATCAGTGATGTCTTAAT+GGG | - | chr1.3:60688697-60688716 | MS.gene20939:intron | 25.0% |
| ! | AAAGCAAATGGAAAATTGAA+AGG | + | chr1.3:60689108-60689127 | None:intergenic | 25.0% |
| ! | AAAGTTACTTGCAATCAAAA+GGG | - | chr1.3:60689951-60689970 | MS.gene20939:intron | 25.0% |
| ! | AAATACACCCATAATAAAGT+AGG | - | chr1.3:60690482-60690501 | MS.gene20939:intron | 25.0% |
| ! | AATAAAGTAGGAGCTATAAT+AGG | - | chr1.3:60690494-60690513 | MS.gene20939:intron | 25.0% |
| ! | ACAGTTTAATAAGGTGTATT+TGG | + | chr1.3:60690431-60690450 | None:intergenic | 25.0% |
| ! | AGTATAAAAGTAATCATCCA+AGG | - | chr1.3:60689390-60689409 | MS.gene20939:intron | 25.0% |
| ! | CAAACAAACAGAAAAATGAA+AGG | - | chr1.3:60690873-60690892 | MS.gene20939:CDS | 25.0% |
| ! | CTTAATGTAATGTGGTATAT+GGG | + | chr1.3:60689743-60689762 | None:intergenic | 25.0% |
| ! | GAAAAATATTGAAGAAACTG+AGG | - | chr1.3:60688748-60688767 | MS.gene20939:intron | 25.0% |
| ! | GATAATGTTATTGCTTTCTT+TGG | + | chr1.3:60690021-60690040 | None:intergenic | 25.0% |
| ! | TACTTTATTATGGGTGTATT+TGG | + | chr1.3:60690483-60690502 | None:intergenic | 25.0% |
| ! | TATAGCTCCTACTTTATTAT+GGG | + | chr1.3:60690492-60690511 | None:intergenic | 25.0% |
| ! | TCAAAAGTCGTTTATTTATG+AGG | + | chr1.3:60691214-60691233 | None:intergenic | 25.0% |
| ! | TCAATGAACTCATACATATT+GGG | + | chr1.3:60687435-60687454 | None:intergenic | 25.0% |
| ! | TGATAAAGTTGTATGAAACA+GGG | - | chr1.3:60690527-60690546 | MS.gene20939:intron | 25.0% |
| ! | TGATTAATCATGTCTAAACA+AGG | + | chr1.3:60689770-60689789 | None:intergenic | 25.0% |
| ! | TGGATTATATCATTGAGATT+GGG | + | chr1.3:60688565-60688584 | None:intergenic | 25.0% |
| ! | TTATAGCTCCTACTTTATTA+TGG | + | chr1.3:60690493-60690512 | None:intergenic | 25.0% |
| ! | TTCAATGAACTCATACATAT+TGG | + | chr1.3:60687436-60687455 | None:intergenic | 25.0% |
| ! | TTGATAAAGTTGTATGAAAC+AGG | - | chr1.3:60690526-60690545 | MS.gene20939:intron | 25.0% |
| !!! | AAGAAACAACTTTAGCTTTT+CGG | - | chr1.3:60688524-60688543 | MS.gene20939:intron | 25.0% |
| !!! | AATTTGTTCGATTTTCAAGT+AGG | - | chr1.3:60690275-60690294 | MS.gene20939:intron | 25.0% |
| !!! | ATTATTTTAAAAAGGTGCCT+TGG | + | chr1.3:60689410-60689429 | None:intergenic | 25.0% |
| !!! | CTTTCATTTTTCTGTTTGTT+TGG | + | chr1.3:60690875-60690894 | None:intergenic | 25.0% |
| !!! | GTTTTAATTAACTTGCAGTT+TGG | - | chr1.3:60690776-60690795 | MS.gene20939:intron | 25.0% |
| !!! | GTTTTAATTAACTTTCAGCT+TGG | + | chr1.3:60689216-60689235 | None:intergenic | 25.0% |
| !!! | TGGTATCTTTGTTTTTTAAG+TGG | - | chr1.3:60688603-60688622 | MS.gene20939:intron | 25.0% |
| AAACAACGAGAAAGAAAATC+AGG | - | chr1.3:60687243-60687262 | MS.gene20939:intron | 30.0% | |
| AACCAGAAAAAAATGTCTGA+GGG | + | chr1.3:60689545-60689564 | None:intergenic | 30.0% | |
| AACTAAGTACATTGCAAAAG+GGG | - | chr1.3:60689272-60689291 | MS.gene20939:intron | 30.0% | |
| AACTAGAGCTTAAACAACTA+AGG | - | chr1.3:60689799-60689818 | MS.gene20939:intron | 30.0% | |
| AAGGATACCTTAATGTAATG+TGG | + | chr1.3:60689751-60689770 | None:intergenic | 30.0% | |
| AATCCATCTATACATACACA+TGG | - | chr1.3:60690343-60690362 | MS.gene20939:intron | 30.0% | |
| AATTTGTCAAAACACTACGA+AGG | + | chr1.3:60691137-60691156 | None:intergenic | 30.0% | |
| AGAATAGCTCAACTGTTTAA+CGG | - | chr1.3:60691103-60691122 | MS.gene20939:CDS | 30.0% | |
| ATAAAGTTGTATGAAACAGG+GGG | - | chr1.3:60690529-60690548 | MS.gene20939:intron | 30.0% | |
| ATATGAATGAATCAATGAGC+AGG | - | chr1.3:60687497-60687516 | MS.gene20939:intron | 30.0% | |
| ATGAATTCAATCATCAGCAA+CGG | - | chr1.3:60689697-60689716 | MS.gene20939:CDS | 30.0% | |
| ATGTGTATGTATAGATGGAT+TGG | + | chr1.3:60690344-60690363 | None:intergenic | 30.0% | |
| ATTCCATGTGTATGTATAGA+TGG | + | chr1.3:60690349-60690368 | None:intergenic | 30.0% | |
| ATTGAAGCTGAAGATATAGA+TGG | + | chr1.3:60689880-60689899 | None:intergenic | 30.0% | |
| ATTGAGAAAGCCTATTCAAA+TGG | + | chr1.3:60688012-60688031 | None:intergenic | 30.0% | |
| CATTTGATCATAAGCTATTG+TGG | + | chr1.3:60690375-60690394 | None:intergenic | 30.0% | |
| CCATATACCACATTACATTA+AGG | - | chr1.3:60689741-60689760 | MS.gene20939:intron | 30.0% | |
| CCTTAATGTAATGTGGTATA+TGG | + | chr1.3:60689744-60689763 | None:intergenic | 30.0% | |
| CTGGATTATATCATTGAGAT+TGG | + | chr1.3:60688566-60688585 | None:intergenic | 30.0% | |
| CTTATCATAACTCATTTAGC+AGG | - | chr1.3:60690658-60690677 | MS.gene20939:intron | 30.0% | |
| CTTTCTCATATTTATTGCCA+TGG | - | chr1.3:60688325-60688344 | MS.gene20939:intron | 30.0% | |
| GAAAGTTACTTGCAATCAAA+AGG | - | chr1.3:60689950-60689969 | MS.gene20939:intron | 30.0% | |
| GAAATAGATACAGATTGAGT+TGG | + | chr1.3:60689625-60689644 | None:intergenic | 30.0% | |
| GAACTAAGTACATTGCAAAA+GGG | - | chr1.3:60689271-60689290 | MS.gene20939:intron | 30.0% | |
| GACCAATGGAATTACATTTA+GGG | + | chr1.3:60689062-60689081 | None:intergenic | 30.0% | |
| GATAAAGTTGTATGAAACAG+GGG | - | chr1.3:60690528-60690547 | MS.gene20939:intron | 30.0% | |
| GCAATTTGAGAAACAGAAAT+CGG | - | chr1.3:60690616-60690635 | MS.gene20939:intron | 30.0% | |
| GTAACCCTTGTAAAAGAAAA+GGG | + | chr1.3:60687661-60687680 | None:intergenic | 30.0% | |
| TAACCCTTGTAAAAGAAAAG+GGG | + | chr1.3:60687660-60687679 | None:intergenic | 30.0% | |
| TATGAATGAATCAATGAGCA+GGG | - | chr1.3:60687498-60687517 | MS.gene20939:intron | 30.0% | |
| TATGCTGAAAAACTTAGAAG+AGG | - | chr1.3:60688878-60688897 | MS.gene20939:intron | 30.0% | |
| TCAAATACGTCCATTTGAAT+AGG | - | chr1.3:60687999-60688018 | MS.gene20939:intron | 30.0% | |
| TCCAAATTATTGTGTTTCGT+GGG | + | chr1.3:60691040-60691059 | None:intergenic | 30.0% | |
| TGACCAATGGAATTACATTT+AGG | + | chr1.3:60689063-60689082 | None:intergenic | 30.0% | |
| TGTAACCCTTGTAAAAGAAA+AGG | + | chr1.3:60687662-60687681 | None:intergenic | 30.0% | |
| TTCAAAATTGAAATCCACTC+TGG | + | chr1.3:60690803-60690822 | None:intergenic | 30.0% | |
| TTGACAATGTCTATCTAGTT+GGG | - | chr1.3:60688443-60688462 | MS.gene20939:intron | 30.0% | |
| TTTGACAATGTCTATCTAGT+TGG | - | chr1.3:60688442-60688461 | MS.gene20939:intron | 30.0% | |
| ! | AATTAGTTTGACATGGTTGT+GGG | + | chr1.3:60689309-60689328 | None:intergenic | 30.0% |
| ! | ACATACTTCTTGTTTGAGAT+TGG | + | chr1.3:60690730-60690749 | None:intergenic | 30.0% |
| ! | AGTGCTATTATAACATAGAG+GGG | + | chr1.3:60689333-60689352 | None:intergenic | 30.0% |
| ! | ATTTCTGTTTCTCAAATTGC+TGG | + | chr1.3:60690616-60690635 | None:intergenic | 30.0% |
| ! | CTCTCTTCCTTTAATGTTTT+GGG | - | chr1.3:60689644-60689663 | MS.gene20939:CDS | 30.0% |
| ! | GAATTACATTTAGGGAGTTT+TGG | + | chr1.3:60689054-60689073 | None:intergenic | 30.0% |
| ! | GAGTGCTATTATAACATAGA+GGG | + | chr1.3:60689334-60689353 | None:intergenic | 30.0% |
| ! | TAATTAGTTTGACATGGTTG+TGG | + | chr1.3:60689310-60689329 | None:intergenic | 30.0% |
| ! | TAGATTAACCTCTGGTTTAT+AGG | - | chr1.3:60687743-60687762 | MS.gene20939:intron | 30.0% |
| ! | TATAATTTGTAGAACGGTGT+TGG | + | chr1.3:60689678-60689697 | None:intergenic | 30.0% |
| ! | TATGAGAAAGCATACTCTAT+TGG | + | chr1.3:60688315-60688334 | None:intergenic | 30.0% |
| ! | TCTCTCTTCCTTTAATGTTT+TGG | - | chr1.3:60689643-60689662 | MS.gene20939:CDS | 30.0% |
| ! | TGTGTATGTATAGATGGATT+GGG | + | chr1.3:60690343-60690362 | None:intergenic | 30.0% |
| ! | TTGGATGTTTTCCTTTCTTA+CGG | + | chr1.3:60689035-60689054 | None:intergenic | 30.0% |
| !! | AGTTGCTTGTTTCTAACTAT+AGG | + | chr1.3:60688500-60688519 | None:intergenic | 30.0% |
| !! | ATACTAACTTTAAGATGGTC+AGG | + | chr1.3:60687631-60687650 | None:intergenic | 30.0% |
| !! | ATTTTCTTTCTCGTTGTTTC+TGG | + | chr1.3:60687242-60687261 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAACTCTCC+AGG | + | chr1.3:60687887-60687906 | None:intergenic | 30.0% |
| !! | GAAAAATGAAAGGCATTTGA+TGG | - | chr1.3:60690883-60690902 | MS.gene20939:CDS | 30.0% |
| !! | GAAAATTGAAAGGCATTTGA+CGG | + | chr1.3:60689098-60689117 | None:intergenic | 30.0% |
| !! | GACAAGGTATTTGATTTTCT+AGG | + | chr1.3:60689927-60689946 | None:intergenic | 30.0% |
| !! | GTATTTGATTTTCTAGGAGT+TGG | + | chr1.3:60689921-60689940 | None:intergenic | 30.0% |
| !! | GTTTTGATATTGCTTACACA+AGG | + | chr1.3:60689362-60689381 | None:intergenic | 30.0% |
| !! | TACTAACTTTAAGATGGTCA+GGG | + | chr1.3:60687630-60687649 | None:intergenic | 30.0% |
| !! | TATAGATGGATTGGGTATTT+AGG | + | chr1.3:60690335-60690354 | None:intergenic | 30.0% |
| !! | TTTATCTTTTGTTGTGGAAG+CGG | + | chr1.3:60687814-60687833 | None:intergenic | 30.0% |
| !! | TTTTTGGTCAGTAATTGGAA+TGG | + | chr1.3:60691259-60691278 | None:intergenic | 30.0% |
| !!! | TATTTTTAGTTTCTAGCAGC+TGG | - | chr1.3:60687700-60687719 | MS.gene20939:intron | 30.0% |
| !!! | TCTTTGTTTTTTAAGTGGAG+TGG | - | chr1.3:60688608-60688627 | MS.gene20939:intron | 30.0% |
| !!! | TTGCATTTTTGGTCAGTAAT+TGG | + | chr1.3:60691264-60691283 | None:intergenic | 30.0% |
| AAACAACTAAGGTCAAGACT+TGG | - | chr1.3:60689810-60689829 | MS.gene20939:intron | 35.0% | |
| AACCCTTGTAAAAGAAAAGG+GGG | + | chr1.3:60687659-60687678 | None:intergenic | 35.0% | |
| AACGTGTAACAGATTAGCAT+TGG | - | chr1.3:60687200-60687219 | MS.gene20939:intron | 35.0% | |
| AATCAGCACTGTAACTTGAT+GGG | + | chr1.3:60688838-60688857 | None:intergenic | 35.0% | |
| ACGTATTTGACCTTATCTAC+TGG | + | chr1.3:60687989-60688008 | None:intergenic | 35.0% | |
| CTCCCTAAATGTAATTCCAT+TGG | - | chr1.3:60689057-60689076 | MS.gene20939:intron | 35.0% | |
| GAACCAGAAAAAAATGTCTG+AGG | + | chr1.3:60689546-60689565 | None:intergenic | 35.0% | |
| GAAGGGTTGAAAATGACTAA+CGG | - | chr1.3:60690905-60690924 | MS.gene20939:CDS | 35.0% | |
| GAATAGGCTTTCTCAATTGA+AGG | - | chr1.3:60688015-60688034 | MS.gene20939:intron | 35.0% | |
| GCAAGTAACTTTCTTTGACA+AGG | + | chr1.3:60689943-60689962 | None:intergenic | 35.0% | |
| GGAACTAAGTACATTGCAAA+AGG | - | chr1.3:60689270-60689289 | MS.gene20939:intron | 35.0% | |
| GTACAAAGATAGAAGTCAAC+AGG | - | chr1.3:60691308-60691327 | MS.gene20939:intron | 35.0% | |
| GTCCAAATTATTGTGTTTCG+TGG | + | chr1.3:60691041-60691060 | None:intergenic | 35.0% | |
| GTGTGTATAACCATAGTAAG+TGG | - | chr1.3:60689973-60689992 | MS.gene20939:intron | 35.0% | |
| TAATCAGCACTGTAACTTGA+TGG | + | chr1.3:60688839-60688858 | None:intergenic | 35.0% | |
| TACTTCTCCTTGTTCAAAAC+TGG | - | chr1.3:60689237-60689256 | MS.gene20939:intron | 35.0% | |
| TCCATTTGCTTTGTCTGAAA+TGG | - | chr1.3:60689116-60689135 | MS.gene20939:intron | 35.0% | |
| TCTCAATTGAAGGAAGTGAA+TGG | - | chr1.3:60688025-60688044 | MS.gene20939:intron | 35.0% | |
| TCTTAGTCATGTAGTCAGTA+GGG | - | chr1.3:60690300-60690319 | MS.gene20939:intron | 35.0% | |
| TGAAACGCTCTAACATGAAT+TGG | + | chr1.3:60691410-60691429 | None:intergenic | 35.0% | |
| TGACAATGTCTATCTAGTTG+GGG | - | chr1.3:60688444-60688463 | MS.gene20939:intron | 35.0% | |
| TGATATTGCTTACACAAGGA+TGG | + | chr1.3:60689358-60689377 | None:intergenic | 35.0% | |
| TTCTTAGTCATGTAGTCAGT+AGG | - | chr1.3:60690299-60690318 | MS.gene20939:intron | 35.0% | |
| TTTATGTTGCTCGTACTTTG+TGG | - | chr1.3:60688642-60688661 | MS.gene20939:intron | 35.0% | |
| ! | AACTAGGTGCATTTTGCAAT+TGG | + | chr1.3:60690065-60690084 | None:intergenic | 35.0% |
| ! | ATTAGTTTGACATGGTTGTG+GGG | + | chr1.3:60689308-60689327 | None:intergenic | 35.0% |
| ! | CGAGTGCTATTATAACATAG+AGG | + | chr1.3:60689335-60689354 | None:intergenic | 35.0% |
| ! | CTGCAAATTGGTTGCATTTT+TGG | + | chr1.3:60691275-60691294 | None:intergenic | 35.0% |
| ! | TAACATGAATTGGTCTGTTG+CGG | + | chr1.3:60691400-60691419 | None:intergenic | 35.0% |
| ! | TGGATGTTTTCCTTTCTTAC+GGG | + | chr1.3:60689034-60689053 | None:intergenic | 35.0% |
| ! | TTCCCCCTTTTCTTTTACAA+GGG | - | chr1.3:60687654-60687673 | MS.gene20939:intron | 35.0% |
| ! | TTTCCCCCTTTTCTTTTACA+AGG | - | chr1.3:60687653-60687672 | MS.gene20939:intron | 35.0% |
| !! | AATGAAAGGCATTTGATGGA+AGG | - | chr1.3:60690887-60690906 | MS.gene20939:CDS | 35.0% |
| !! | ATGAAAGGCATTTGATGGAA+GGG | - | chr1.3:60690888-60690907 | MS.gene20939:CDS | 35.0% |
| !! | CAAAAGTATCCTGAAGAACA+AGG | + | chr1.3:60687383-60687402 | None:intergenic | 35.0% |
| !! | TTTGATTTTCTAGGAGTTGG+AGG | + | chr1.3:60689918-60689937 | None:intergenic | 35.0% |
| !!! | TTTCTCTTTTTTACCTGACG+AGG | + | chr1.3:60688240-60688259 | None:intergenic | 35.0% |
| AAAAGCTTCTGCAGGAAAAG+AGG | - | chr1.3:60688777-60688796 | MS.gene20939:intron | 40.0% | |
| AATTGAAACCCACTCTAGCA+AGG | - | chr1.3:60689189-60689208 | MS.gene20939:intron | 40.0% | |
| AGTGCTTATGCCAGTAGATA+AGG | - | chr1.3:60687976-60687995 | MS.gene20939:intron | 40.0% | |
| ATAGATGGTTTCGATCCATC+AGG | + | chr1.3:60689865-60689884 | None:intergenic | 40.0% | |
| ATATTTATTGCCATGGCCCA+TGG | - | chr1.3:60688332-60688351 | MS.gene20939:intron | 40.0% | |
| ATTTAGCAGGTTAACGTAGC+TGG | - | chr1.3:60690671-60690690 | MS.gene20939:intron | 40.0% | |
| CAATGGCAAGATGAATCATC+TGG | + | chr1.3:60688585-60688604 | None:intergenic | 40.0% | |
| CAGAAAAAAATGTCTGAGGG+TGG | + | chr1.3:60689542-60689561 | None:intergenic | 40.0% | |
| CAGAAGAAAGCTCTACACAA+TGG | - | chr1.3:60688262-60688281 | MS.gene20939:intron | 40.0% | |
| CAGATGATTCATCTTGCCAT+TGG | - | chr1.3:60688583-60688602 | MS.gene20939:intron | 40.0% | |
| CAGGAATTAGCTAAGAAGAG+AGG | - | chr1.3:60687535-60687554 | MS.gene20939:intron | 40.0% | |
| CAGGGTTAAGTATATTGAGC+AGG | - | chr1.3:60687516-60687535 | MS.gene20939:intron | 40.0% | |
| CGAAGTCTTTCCACTTACTA+TGG | + | chr1.3:60689986-60690005 | None:intergenic | 40.0% | |
| CGTTGTTTGGTTGAGATTGT+GGG | + | chr1.3:60687083-60687102 | None:intergenic | 40.0% | |
| CTGAGATTGCTGTAAAGTGA+GGG | + | chr1.3:60687280-60687299 | None:intergenic | 40.0% | |
| CTGTCAGCCCAAAACATTAA+AGG | + | chr1.3:60689654-60689673 | None:intergenic | 40.0% | |
| CTTCTATCTTTGTACAGCTC+AGG | + | chr1.3:60691303-60691322 | None:intergenic | 40.0% | |
| CTTGTTCAAAACTGGAAGCA+GGG | - | chr1.3:60689245-60689264 | MS.gene20939:intron | 40.0% | |
| GCCATTTCAGACAAAGCAAA+TGG | + | chr1.3:60689120-60689139 | None:intergenic | 40.0% | |
| GCCCACGAAACACAATAATT+TGG | - | chr1.3:60691036-60691055 | MS.gene20939:CDS | 40.0% | |
| GTCAAACTCCTATAAACCAG+AGG | + | chr1.3:60687754-60687773 | None:intergenic | 40.0% | |
| GTGCAGTTTAGATTAACCTC+TGG | - | chr1.3:60687735-60687754 | MS.gene20939:intron | 40.0% | |
| GTTCTGTTGGAGTTCTCTTT+CGG | + | chr1.3:60687047-60687066 | None:intergenic | 40.0% | |
| GTTGTTTGGTTGAGATTGTG+GGG | + | chr1.3:60687082-60687101 | None:intergenic | 40.0% | |
| TAAGGATGACCTTGTTCTTC+AGG | - | chr1.3:60687371-60687390 | MS.gene20939:intron | 40.0% | |
| TAAGTACATTGCAAAAGGGG+CGG | - | chr1.3:60689275-60689294 | MS.gene20939:intron | 40.0% | |
| TAGATGGTTTCGATCCATCA+GGG | + | chr1.3:60689864-60689883 | None:intergenic | 40.0% | |
| TATTTATTGCCATGGCCCAT+GGG | - | chr1.3:60688333-60688352 | MS.gene20939:intron | 40.0% | |
| TCGTTGTTTGGTTGAGATTG+TGG | + | chr1.3:60687084-60687103 | None:intergenic | 40.0% | |
| TTGCAATTGGTTGGAGCAAA+TGG | + | chr1.3:60690052-60690071 | None:intergenic | 40.0% | |
| ! | AGGTGCATTTTGCAATTGGT+TGG | + | chr1.3:60690061-60690080 | None:intergenic | 40.0% |
| ! | CATAAGCACTTGTGACTTGT+GGG | + | chr1.3:60687966-60687985 | None:intergenic | 40.0% |
| ! | CTTTTCCTGCAGAAGCTTTT+TGG | + | chr1.3:60688777-60688796 | None:intergenic | 40.0% |
| ! | GAGGGGTAATTAGTTTGACA+TGG | + | chr1.3:60689316-60689335 | None:intergenic | 40.0% |
| ! | GGATGTTTTCCTTTCTTACG+GGG | + | chr1.3:60689033-60689052 | None:intergenic | 40.0% |
| ! | TTTCGGTAGTTTTTCCTTCG+CGG | + | chr1.3:60687030-60687049 | None:intergenic | 40.0% |
| !! | ACTTTTAGGGGCTTAAGTGA+AGG | + | chr1.3:60688989-60689008 | None:intergenic | 40.0% |
| !! | ATTGAAAGGCATTTGACGGA+AGG | + | chr1.3:60689094-60689113 | None:intergenic | 40.0% |
| !! | TTGAAAGGCATTTGACGGAA+GGG | + | chr1.3:60689093-60689112 | None:intergenic | 40.0% |
| !!! | ACACCACATGTCACTTTTAG+GGG | + | chr1.3:60689001-60689020 | None:intergenic | 40.0% |
| !!! | CACCCTCAGACATTTTTTTC+TGG | - | chr1.3:60689540-60689559 | MS.gene20939:intron | 40.0% |
| !!! | GACACCACATGTCACTTTTA+GGG | + | chr1.3:60689002-60689021 | None:intergenic | 40.0% |
| !!! | GCTGTTTTTATAAGCGAACC+TGG | - | chr1.3:60687866-60687885 | MS.gene20939:intron | 40.0% |
| !!! | TATGACACCGAGTCACTTTT+AGG | - | chr1.3:60690979-60690998 | MS.gene20939:intron | 40.0% |
| !!! | TGACACCACATGTCACTTTT+AGG | + | chr1.3:60689003-60689022 | None:intergenic | 40.0% |
| !!! | TTTTAGTTTCTAGCAGCTGG+TGG | - | chr1.3:60687703-60687722 | MS.gene20939:intron | 40.0% |
| AAAACATCAGCCTTCCAGTC+AGG | + | chr1.3:60689573-60689592 | None:intergenic | 45.0% | |
| AAACATCAGCCTTCCAGTCA+GGG | + | chr1.3:60689572-60689591 | None:intergenic | 45.0% | |
| AAGCCCCTAAAAGTGACATG+TGG | - | chr1.3:60688995-60689014 | MS.gene20939:intron | 45.0% | |
| ACTTTACAGCAATCTCAGCC+TGG | - | chr1.3:60687282-60687301 | MS.gene20939:intron | 45.0% | |
| AGCTCTACACAATGGACAAC+TGG | - | chr1.3:60688270-60688289 | MS.gene20939:intron | 45.0% | |
| CAGGAAAAGAGGCTTATGGT+GGG | - | chr1.3:60688788-60688807 | MS.gene20939:intron | 45.0% | |
| CCTTCTTTCGCTTTCGTCAT+CGG | + | chr1.3:60687109-60687128 | None:intergenic | 45.0% | |
| CCTTGTTCAAAACTGGAAGC+AGG | - | chr1.3:60689244-60689263 | MS.gene20939:intron | 45.0% | |
| CTAACAGCAACTTTGCCCAT+GGG | + | chr1.3:60688351-60688370 | None:intergenic | 45.0% | |
| GAAGGGACGAAAATGACCAA+TGG | + | chr1.3:60689076-60689095 | None:intergenic | 45.0% | |
| GCATAAGCACTTGTGACTTG+TGG | + | chr1.3:60687967-60687986 | None:intergenic | 45.0% | |
| GCCGGTATCGTTCTTATCAA+CGG | + | chr1.3:60687334-60687353 | None:intergenic | 45.0% | |
| GCTCAGGATGTTCTGCAAAT+TGG | + | chr1.3:60691287-60691306 | None:intergenic | 45.0% | |
| GCTGAGATTGCTGTAAAGTG+AGG | + | chr1.3:60687281-60687300 | None:intergenic | 45.0% | |
| GGGATCTTCATCCAAAACAG+CGG | + | chr1.3:60687415-60687434 | None:intergenic | 45.0% | |
| GGGTTAATCGTCTTGCAGAA+TGG | + | chr1.3:60689844-60689863 | None:intergenic | 45.0% | |
| TCGTCATCGGAATCGTTGTT+TGG | + | chr1.3:60687096-60687115 | None:intergenic | 45.0% | |
| TCTAACAGCAACTTTGCCCA+TGG | + | chr1.3:60688352-60688371 | None:intergenic | 45.0% | |
| TCTGCAGGAAAAGAGGCTTA+TGG | - | chr1.3:60688784-60688803 | MS.gene20939:intron | 45.0% | |
| TGAGAAACAGAAATCGGCAG+TGG | - | chr1.3:60690622-60690641 | MS.gene20939:intron | 45.0% | |
| TGATTATTTCCAGCGTGGCA+GGG | - | chr1.3:60688853-60688872 | MS.gene20939:intron | 45.0% | |
| TGCAAGACGATTAACCCTGA+TGG | - | chr1.3:60689847-60689866 | MS.gene20939:intron | 45.0% | |
| TGTAAATCTTGTGCCTCGTC+AGG | - | chr1.3:60688224-60688243 | MS.gene20939:intron | 45.0% | |
| TTCAAAACTGGAAGCAGGGA+TGG | - | chr1.3:60689249-60689268 | MS.gene20939:intron | 45.0% | |
| TTGGTTGAGATTGTGGGGAT+TGG | + | chr1.3:60687077-60687096 | None:intergenic | 45.0% | |
| TTGTGGAAGCGGCTTATTGT+CGG | + | chr1.3:60687803-60687822 | None:intergenic | 45.0% | |
| ! | GATTGGTCGCATTGTTCTGT+TGG | + | chr1.3:60687060-60687079 | None:intergenic | 45.0% |
| ! | GCCGTTGATAAGAACGATAC+CGG | - | chr1.3:60687330-60687349 | MS.gene20939:intron | 45.0% |
| ! | GTTGATAAGAACGATACCGG+CGG | - | chr1.3:60687333-60687352 | MS.gene20939:intron | 45.0% |
| ! | TGCTCAAGAAACCGCTGTTT+TGG | - | chr1.3:60687401-60687420 | MS.gene20939:intron | 45.0% |
| !! | ACTGCTGGACTCGTTTTGTT+TGG | + | chr1.3:60691349-60691368 | None:intergenic | 45.0% |
| !! | AGTGCTGATTATTTCCAGCG+TGG | - | chr1.3:60688848-60688867 | MS.gene20939:intron | 45.0% |
| !!! | CCTGCTTCCAGTTTTGAACA+AGG | + | chr1.3:60689247-60689266 | None:intergenic | 45.0% |
| !!! | ACTAAAATATTATTTTAAAA+AGG | + | chr1.3:60689418-60689437 | None:intergenic | 5.0% |
| !!! | TTTTTAAAAATTTATATGAA+TGG | - | chr1.3:60688193-60688212 | MS.gene20939:intron | 5.0% |
| AACGAGAACGTCACCGTGTT+CGG | - | chr1.3:60691433-60691452 | MS.gene20939:CDS | 50.0% | |
| ACTTGCAGTTTGGTCCAGAG+TGG | - | chr1.3:60690786-60690805 | MS.gene20939:intron | 50.0% | |
| AGCTTGGTCCTTGCTAGAGT+GGG | + | chr1.3:60689200-60689219 | None:intergenic | 50.0% | |
| CATACTGCTCCCCGTAAGAA+AGG | - | chr1.3:60689021-60689040 | MS.gene20939:intron | 50.0% | |
| CCGATGACGAAAGCGAAAGA+AGG | - | chr1.3:60687106-60687125 | MS.gene20939:CDS | 50.0% | |
| CTGATTATTTCCAGCGTGGC+AGG | - | chr1.3:60688852-60688871 | MS.gene20939:intron | 50.0% | |
| GCAGGAAAAGAGGCTTATGG+TGG | - | chr1.3:60688787-60688806 | MS.gene20939:intron | 50.0% | |
| GCTAAACCGCTGGAAATTCC+AGG | + | chr1.3:60687303-60687322 | None:intergenic | 50.0% | |
| GCTGTAAAGTGAGGGTTGCA+GGG | + | chr1.3:60687272-60687291 | None:intergenic | 50.0% | |
| TCTCAGCCTGGAATTTCCAG+CGG | - | chr1.3:60687294-60687313 | MS.gene20939:intron | 50.0% | |
| TGCTGTAAAGTGAGGGTTGC+AGG | + | chr1.3:60687273-60687292 | None:intergenic | 50.0% | |
| ATCAGCCTTCCAGTCAGGGA+CGG | + | chr1.3:60689568-60689587 | None:intergenic | 55.0% | |
| ATGCTCCTGGAGCAGTACAG+AGG | - | chr1.3:60691370-60691389 | MS.gene20939:CDS | 55.0% | |
| CAGCTTGGTCCTTGCTAGAG+TGG | + | chr1.3:60689201-60689220 | None:intergenic | 55.0% | |
| CGAAACAAGAGAAGCCGCGA+AGG | - | chr1.3:60687013-60687032 | MS.gene20939:CDS | 55.0% | |
| GATAAGAACGATACCGGCGG+TGG | - | chr1.3:60687336-60687355 | MS.gene20939:intron | 55.0% | |
| GGCTGCCAAAAAGCTTCTGC+AGG | - | chr1.3:60688769-60688788 | MS.gene20939:intron | 55.0% | |
| ! | GGCTTTAGCAGCTAAACCGC+TGG | + | chr1.3:60687313-60687332 | None:intergenic | 55.0% |
| !! | TTTCTGGTTCCGTCCCTGAC+TGG | - | chr1.3:60689556-60689575 | MS.gene20939:intron | 55.0% |
| CAGCATAATCCCTGCCACGC+TGG | + | chr1.3:60688865-60688884 | None:intergenic | 60.0% | |
| CGGTGGCGATGGAGCTGATA+AGG | - | chr1.3:60687353-60687372 | MS.gene20939:intron | 60.0% | |
| GAGTCCAGCAGTGATGCTCC+TGG | - | chr1.3:60691357-60691376 | MS.gene20939:CDS | 60.0% | |
| GCAACTTTGCCCATGGGCCA+TGG | + | chr1.3:60688345-60688364 | None:intergenic | 60.0% | |
| TCCTGGAGCAGTACAGAGGC+AGG | - | chr1.3:60691374-60691393 | MS.gene20939:CDS | 60.0% | |
| TGGTTCCGTCCCTGACTGGA+AGG | - | chr1.3:60689560-60689579 | MS.gene20939:intron | 60.0% | |
| !! | TGCTCCAGGAGCATCACTGC+TGG | + | chr1.3:60691364-60691383 | None:intergenic | 60.0% |
| AACGATACCGGCGGTGGCGA+TGG | - | chr1.3:60687342-60687361 | MS.gene20939:intron | 65.0% | |
| ATCAGCTCCATCGCCACCGC+CGG | + | chr1.3:60687352-60687371 | None:intergenic | 65.0% | |
| GCCTGCCTCTGTACTGCTCC+AGG | + | chr1.3:60691378-60691397 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 60687003 | 60691461 | 60687003 | ID=MS.gene20939 |
| chr1.3 | mRNA | 60687003 | 60691461 | 60687003 | ID=MS.gene20939.t1;Parent=MS.gene20939 |
| chr1.3 | exon | 60691337 | 60691461 | 60691337 | ID=MS.gene20939.t1.exon1;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60691337 | 60691461 | 60691337 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| chr1.3 | exon | 60691025 | 60691252 | 60691025 | ID=MS.gene20939.t1.exon2;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60691025 | 60691252 | 60691025 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| chr1.3 | exon | 60690822 | 60690945 | 60690822 | ID=MS.gene20939.t1.exon3;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60690822 | 60690945 | 60690822 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| chr1.3 | exon | 60690145 | 60690218 | 60690145 | ID=MS.gene20939.t1.exon4;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60690145 | 60690218 | 60690145 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| chr1.3 | exon | 60689565 | 60689725 | 60689565 | ID=MS.gene20939.t1.exon5;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60689565 | 60689725 | 60689565 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| chr1.3 | exon | 60687003 | 60687169 | 60687003 | ID=MS.gene20939.t1.exon6;Parent=MS.gene20939.t1 |
| chr1.3 | CDS | 60687003 | 60687169 | 60687003 | ID=cds.MS.gene20939.t1;Parent=MS.gene20939.t1 |
| Gene Sequence |
| Protein sequence |
