Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21179.t1 | XP_003591385.1 | 95.3 | 127 | 6 | 0 | 50 | 176 | 73 | 199 | 4.30E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21179.t1 | Q7XA78 | 33.1 | 130 | 76 | 4 | 50 | 176 | 93 | 214 | 3.3e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21179.t1 | G7ICW5 | 95.3 | 127 | 6 | 0 | 50 | 176 | 73 | 199 | 3.1e-65 | 257.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049609 | MS.gene21179 | 0.813897 | 2.03E-51 | -1.69E-46 |
| MS.gene050122 | MS.gene21179 | 0.829252 | 5.71E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene21179 | 0.854657 | 1.06E-61 | -1.69E-46 |
| MS.gene050747 | MS.gene21179 | 0.832458 | 9.34E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene21179 | 0.825232 | 5.24E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene21179 | 0.824995 | 5.96E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene21179 | 0.802133 | 6.48E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene21179 | 0.810055 | 1.39E-50 | -1.69E-46 |
| MS.gene051588 | MS.gene21179 | 0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene21179 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene21179 | 0.811592 | 6.48E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene21179 | 0.838688 | 2.48E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene21179 | 0.819831 | 9.45E-53 | -1.69E-46 |
| MS.gene052982 | MS.gene21179 | 0.842221 | 2.95E-58 | -1.69E-46 |
| MS.gene053169 | MS.gene21179 | 0.835217 | 1.91E-56 | -1.69E-46 |
| MS.gene053318 | MS.gene21179 | 0.813868 | 2.06E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene21179 | 0.80226 | 6.10E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene21179 | 0.834379 | 3.10E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene21179 | 0.853846 | 1.82E-61 | -1.69E-46 |
| MS.gene054408 | MS.gene21179 | 0.800283 | 1.55E-48 | -1.69E-46 |
| MS.gene054556 | MS.gene21179 | 0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene054920 | MS.gene21179 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene21179 | 0.829423 | 5.19E-55 | -1.69E-46 |
| MS.gene05505 | MS.gene21179 | 0.803311 | 3.70E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene21179 | 0.834348 | 3.16E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene21179 | 0.839704 | 1.35E-57 | -1.69E-46 |
| MS.gene055744 | MS.gene21179 | 0.842721 | 2.18E-58 | -1.69E-46 |
| MS.gene055909 | MS.gene21179 | 0.831965 | 1.24E-55 | -1.69E-46 |
| MS.gene055911 | MS.gene21179 | 0.838372 | 2.99E-57 | -1.69E-46 |
| MS.gene056040 | MS.gene21179 | 0.840715 | 7.36E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene21179 | 0.842122 | 3.13E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene21179 | 0.807765 | 4.31E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene21179 | 0.833456 | 5.28E-56 | -1.69E-46 |
| MS.gene05666 | MS.gene21179 | 0.8018 | 7.59E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene21179 | 0.807966 | 3.90E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene21179 | 0.806436 | 8.24E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene21179 | 0.815255 | 1.02E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene21179 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene21179 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene21179 | 0.801302 | 9.60E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene21179 | 0.805633 | 1.22E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene21179 | 0.822381 | 2.44E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene21179 | 0.8321 | 1.15E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene21179 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene21179 | 0.808297 | 3.32E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene21179 | 0.845731 | 3.38E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene21179 | 0.837856 | 4.06E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene21179 | 0.830595 | 2.69E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene21179 | 0.819931 | 8.96E-53 | -1.69E-46 |
| MS.gene059517 | MS.gene21179 | 0.814616 | 1.41E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene21179 | 0.850705 | 1.43E-60 | -1.69E-46 |
| MS.gene060835 | MS.gene21179 | 0.805328 | 1.41E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene21179 | 0.821974 | 3.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21179.t1 | MTR_1g086840 | 95.276 | 127 | 6 | 0 | 50 | 176 | 73 | 199 | 1.44e-87 | 258 |
| MS.gene21179.t1 | MTR_1g086840 | 80.667 | 150 | 18 | 2 | 50 | 188 | 73 | 222 | 5.55e-82 | 243 |
| MS.gene21179.t1 | MTR_7g095920 | 36.154 | 130 | 75 | 5 | 47 | 174 | 72 | 195 | 2.83e-19 | 82.8 |
| MS.gene21179.t1 | MTR_3g080840 | 32.331 | 133 | 85 | 3 | 54 | 186 | 93 | 220 | 1.06e-18 | 81.6 |
| MS.gene21179.t1 | MTR_1g471050 | 34.959 | 123 | 73 | 4 | 53 | 174 | 82 | 198 | 1.32e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21179.t1 | AT4G01995 | 66.423 | 137 | 46 | 0 | 50 | 186 | 78 | 214 | 1.21e-59 | 187 |
| MS.gene21179.t1 | AT4G01995 | 70.866 | 127 | 37 | 0 | 50 | 176 | 47 | 173 | 1.43e-59 | 186 |
| MS.gene21179.t1 | AT4G01995 | 67.021 | 94 | 31 | 0 | 50 | 143 | 78 | 171 | 4.84e-36 | 125 |
| MS.gene21179.t1 | AT1G64680 | 36.090 | 133 | 80 | 3 | 54 | 186 | 77 | 204 | 1.81e-23 | 92.8 |
| MS.gene21179.t1 | AT1G64680 | 36.641 | 131 | 78 | 3 | 54 | 184 | 77 | 202 | 3.31e-22 | 90.5 |
| MS.gene21179.t1 | AT1G03055 | 32.331 | 133 | 79 | 4 | 47 | 176 | 90 | 214 | 4.82e-17 | 77.0 |
Find 58 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTAAATGTTGCACCTTAA+TGG | 0.235094 | 1.2:+65296457 | None:intergenic |
| CAATTTGTTTCGCACCAAAT+TGG | 0.279978 | 1.2:+65296933 | MS.gene21179:CDS |
| TTTGTTTCCTCCATTCCTTT+TGG | 0.289746 | 1.2:+65298079 | MS.gene21179:CDS |
| GAAAATTACCGTAGCTTCTA+TGG | 0.292895 | 1.2:-65297168 | None:intergenic |
| TTAGGTTACCTGAACCAATT+TGG | 0.303056 | 1.2:-65296947 | None:intergenic |
| GACCTTCTTCAAGGATCATA+TGG | 0.341865 | 1.2:+65298842 | MS.gene21179:intron |
| AACCTGTGTTGGAAACTTAC+AGG | 0.345038 | 1.2:-65298524 | None:intergenic |
| GTCTACAGAATTGACTTTGC+AGG | 0.348660 | 1.2:-65298316 | None:intergenic |
| GTTTCGCACCAAATTGGTTC+AGG | 0.358197 | 1.2:+65296939 | MS.gene21179:CDS |
| TGTCGAAAGATGCAAGTATC+TGG | 0.367315 | 1.2:+65298468 | MS.gene21179:CDS |
| TTAAATTTAGACCTTCTTCA+AGG | 0.416665 | 1.2:+65298833 | MS.gene21179:intron |
| GCAACTTTGCCTCCACCTAT+AGG | 0.420034 | 1.2:-65298125 | None:intergenic |
| ACAGCTATAATCAGCAAAGT+TGG | 0.424742 | 1.2:-65298885 | None:intergenic |
| TCAATTAGTCCGTCATATCC+AGG | 0.429875 | 1.2:-65297101 | None:intergenic |
| TCAAAGAGTGAATACAAGCC+TGG | 0.439154 | 1.2:+65296889 | MS.gene21179:CDS |
| AGGCAAAGTTGCCGCTATAA+TGG | 0.445748 | 1.2:+65298136 | MS.gene21179:CDS |
| AAAATGCTCATAGCTCCTAT+AGG | 0.484909 | 1.2:+65298110 | MS.gene21179:CDS |
| GATGGAACCTCATGGAATAG+TGG | 0.485415 | 1.2:+65298345 | MS.gene21179:CDS |
| TTACTGCACTTACTTGTCAA+TGG | 0.489234 | 1.2:+65298283 | MS.gene21179:CDS |
| CAGCTATAATCAGCAAAGTT+GGG | 0.496301 | 1.2:-65298884 | None:intergenic |
| TACCGTAGCTTCTATGGTAT+CGG | 0.506593 | 1.2:-65297162 | None:intergenic |
| ATGGAACCTCATGGAATAGT+GGG | 0.508469 | 1.2:+65298346 | MS.gene21179:CDS |
| CAAAGAGTGAATACAAGCCT+GGG | 0.509583 | 1.2:+65296890 | MS.gene21179:CDS |
| GAAGAATCACTAACCTGTGT+TGG | 0.521242 | 1.2:-65298535 | None:intergenic |
| ACTTACTTGTCAATGGCTCA+TGG | 0.525178 | 1.2:+65298290 | MS.gene21179:CDS |
| TCTACAGAATTGACTTTGCA+GGG | 0.526670 | 1.2:-65298315 | None:intergenic |
| CTTACTTGTCAATGGCTCAT+GGG | 0.539633 | 1.2:+65298291 | MS.gene21179:CDS |
| CTCCGATACCATAGAAGCTA+CGG | 0.540098 | 1.2:+65297160 | MS.gene21179:CDS |
| CGAAGAAACCCTGGATATGA+CGG | 0.540621 | 1.2:+65297092 | MS.gene21179:CDS |
| ATATGGAGTTCCATTACTCA+TGG | 0.547623 | 1.2:+65298859 | MS.gene21179:CDS |
| TACTATAACAGGAAGTGGGA+TGG | 0.548952 | 1.2:+65297065 | MS.gene21179:intron |
| GAATGCAAAACTCTCTTGAT+CGG | 0.548983 | 1.2:+65296479 | MS.gene21179:CDS |
| TTATAGAGCTCCAAAAGGAA+TGG | 0.549533 | 1.2:-65298089 | None:intergenic |
| ATTTGGTGCGAAACAAATTG+AGG | 0.552877 | 1.2:-65296930 | None:intergenic |
| CTCCATATGATCCTTGAAGA+AGG | 0.555552 | 1.2:-65298844 | None:intergenic |
| CAATTAGTCCGTCATATCCA+GGG | 0.557200 | 1.2:-65297100 | None:intergenic |
| CTCATAGCTCCTATAGGTGG+AGG | 0.565279 | 1.2:+65298116 | MS.gene21179:CDS |
| TAGTGCCTTTCATCATTAGA+CGG | 0.569097 | 1.2:-65297133 | None:intergenic |
| AAAATACTATAACAGGAAGT+GGG | 0.571265 | 1.2:+65297061 | MS.gene21179:intron |
| AAGTTGGGCTCCATGAGTAA+TGG | 0.572536 | 1.2:-65298869 | None:intergenic |
| ACTATAACAGGAAGTGGGAT+GGG | 0.573427 | 1.2:+65297066 | MS.gene21179:intron |
| ACCTATCAGATGGAACCTCA+TGG | 0.586052 | 1.2:+65298337 | MS.gene21179:CDS |
| AACAAATCATCAATAACCCC+AGG | 0.586570 | 1.2:-65296907 | None:intergenic |
| TCCATGAGGTTCCATCTGAT+AGG | 0.590896 | 1.2:-65298338 | None:intergenic |
| CACCTGTAAGTTTCCAACAC+AGG | 0.597620 | 1.2:+65298522 | MS.gene21179:CDS |
| ACTTTGCTGATTATAGCTGT+AGG | 0.601059 | 1.2:+65298888 | MS.gene21179:CDS |
| AAAGTTGCCGCTATAATGGT+TGG | 0.601706 | 1.2:+65298140 | MS.gene21179:CDS |
| CTGGAGGAAAGCAAGTGTGT+TGG | 0.610904 | 1.2:+65298487 | MS.gene21179:CDS |
| AATTCTGTAGACCTATCAGA+TGG | 0.614406 | 1.2:+65298327 | MS.gene21179:CDS |
| TAGAGCTCCAAAAGGAATGG+AGG | 0.615600 | 1.2:-65298086 | None:intergenic |
| GCTAACCGTCTAATGATGAA+AGG | 0.626704 | 1.2:+65297128 | MS.gene21179:CDS |
| ATGCTCATAGCTCCTATAGG+TGG | 0.633669 | 1.2:+65298113 | MS.gene21179:CDS |
| GATGGGACTCGAAGAAACCC+TGG | 0.637978 | 1.2:+65297083 | MS.gene21179:CDS |
| CGAAAGATGCAAGTATCTGG+AGG | 0.640761 | 1.2:+65298471 | MS.gene21179:CDS |
| AGACTCACCAACCATTATAG+CGG | 0.701172 | 1.2:-65298147 | None:intergenic |
| TGGAACCTCATGGAATAGTG+GGG | 0.705163 | 1.2:+65298347 | MS.gene21179:CDS |
| AAAGAGTGAATACAAGCCTG+GGG | 0.716715 | 1.2:+65296891 | MS.gene21179:CDS |
| GATCACCCCACTATTCCATG+AGG | 0.750720 | 1.2:-65298352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTAAATAAATGTTTA+AGG | - | chr1.2:65298253-65298272 | None:intergenic | 10.0% |
| !! | ATATATGAATATGATTAATG+TGG | + | chr1.2:65297022-65297041 | MS.gene21179:intron | 15.0% |
| !! | AAAGCTATAAATAAGTTAAC+TGG | - | chr1.2:65296982-65297001 | None:intergenic | 20.0% |
| !! | AAATCCTAAGATGATAAAAA+TGG | + | chr1.2:65297612-65297631 | MS.gene21179:intron | 20.0% |
| !! | AAGTTTAGAAGAATCATATA+AGG | - | chr1.2:65297990-65298009 | None:intergenic | 20.0% |
| !! | AGATTATCAAACTGTTTATA+AGG | + | chr1.2:65297377-65297396 | MS.gene21179:intron | 20.0% |
| !! | GAATAAGTAACATTGTATTA+CGG | - | chr1.2:65297892-65297911 | None:intergenic | 20.0% |
| !! | TATAAATAAGTTAACTGGAA+GGG | - | chr1.2:65296977-65296996 | None:intergenic | 20.0% |
| !! | TATGTACTATAAAATGTTGT+AGG | + | chr1.2:65298441-65298460 | MS.gene21179:intron | 20.0% |
| !!! | AGATAAGAATTTGATGTTTT+TGG | + | chr1.2:65297674-65297693 | MS.gene21179:intron | 20.0% |
| !!! | ATAAGAATTTGATGTTTTTG+GGG | + | chr1.2:65297676-65297695 | MS.gene21179:intron | 20.0% |
| !!! | GATAAGAATTTGATGTTTTT+GGG | + | chr1.2:65297675-65297694 | MS.gene21179:intron | 20.0% |
| !!! | GTTTTGATTGAATTTGAATT+AGG | + | chr1.2:65296849-65296868 | MS.gene21179:intron | 20.0% |
| !!! | TAATACAATGTTACTTATTC+TGG | + | chr1.2:65297892-65297911 | MS.gene21179:intron | 20.0% |
| !!! | TTATTTAAGTTTTGAAGCAA+GGG | + | chr1.2:65298260-65298279 | MS.gene21179:intron | 20.0% |
| !!! | TTTATTTAAGTTTTGAAGCA+AGG | + | chr1.2:65298259-65298278 | MS.gene21179:intron | 20.0% |
| !!! | TTTTAGAAAGAAAGAAAAGA+GGG | + | chr1.2:65296999-65297018 | MS.gene21179:intron | 20.0% |
| ! | AAAATACTATAACAGGAAGT+GGG | + | chr1.2:65297061-65297080 | MS.gene21179:intron | 25.0% |
| ! | ATAAATAAGTTAACTGGAAG+GGG | - | chr1.2:65296976-65296995 | None:intergenic | 25.0% |
| ! | ATACTAACATGAAAAAACCA+AGG | - | chr1.2:65298745-65298764 | None:intergenic | 25.0% |
| ! | CTATAAATAAGTTAACTGGA+AGG | - | chr1.2:65296978-65296997 | None:intergenic | 25.0% |
| ! | GAGTATGAAAATACTATAAC+AGG | + | chr1.2:65297054-65297073 | MS.gene21179:intron | 25.0% |
| ! | TACTAACATGAAAAAACCAA+GGG | - | chr1.2:65298744-65298763 | None:intergenic | 25.0% |
| ! | TAGTTATCTTTGCGAAAAAA+TGG | + | chr1.2:65297791-65297810 | MS.gene21179:intron | 25.0% |
| ! | TATGAATATGATTAATGTGG+TGG | + | chr1.2:65297025-65297044 | MS.gene21179:intron | 25.0% |
| ! | TCATCTTGTATTATTGAAAG+TGG | + | chr1.2:65298416-65298435 | MS.gene21179:intron | 25.0% |
| ! | TGATTCTTCTAAACTTTGAA+TGG | + | chr1.2:65297994-65298013 | MS.gene21179:intron | 25.0% |
| ! | TGATTGAATTTGAATTAGGT+GGG | + | chr1.2:65296853-65296872 | MS.gene21179:intron | 25.0% |
| ! | TTAAATTTAGACCTTCTTCA+AGG | + | chr1.2:65298833-65298852 | MS.gene21179:intron | 25.0% |
| ! | TTGATTGAATTTGAATTAGG+TGG | + | chr1.2:65296852-65296871 | MS.gene21179:intron | 25.0% |
| !! | ACATACTTATCATTTTACGT+AGG | + | chr1.2:65296538-65296557 | MS.gene21179:intron | 25.0% |
| !! | TAAATTTTGTGTGACTGTTT+AGG | + | chr1.2:65297339-65297358 | MS.gene21179:intron | 25.0% |
| !! | TTAGTTAAGTTGTTACAGTT+AGG | + | chr1.2:65296639-65296658 | MS.gene21179:intron | 25.0% |
| !! | TTTTGACAGAATTTGAACTA+TGG | - | chr1.2:65296512-65296531 | None:intergenic | 25.0% |
| !!! | ATATAAACCTTTTGAAACCA+TGG | - | chr1.2:65297261-65297280 | None:intergenic | 25.0% |
| !!! | CTTTTAGAAAGAAAGAAAAG+AGG | + | chr1.2:65296998-65297017 | MS.gene21179:intron | 25.0% |
| !!! | GTTTCCATTTTTATCATCTT+AGG | - | chr1.2:65297619-65297638 | None:intergenic | 25.0% |
| !!! | TTTGAAGTTGTTGCATTTTA+TGG | + | chr1.2:65298789-65298808 | MS.gene21179:intron | 25.0% |
| AATATGATTAATGTGGTGGT+TGG | + | chr1.2:65297029-65297048 | MS.gene21179:intron | 30.0% | |
| AGCTTTACTTTCTCTTTCTA+AGG | - | chr1.2:65297568-65297587 | None:intergenic | 30.0% | |
| AGGTTAGAAACCAATTAAAC+CGG | + | chr1.2:65296558-65296577 | MS.gene21179:intron | 30.0% | |
| GAAAATACTATAACAGGAAG+TGG | + | chr1.2:65297060-65297079 | MS.gene21179:intron | 30.0% | |
| TCAGTTAAAGACAAATCGTT+TGG | - | chr1.2:65298696-65298715 | None:intergenic | 30.0% | |
| TTACAGTTAGGAAGAAATGA+AGG | + | chr1.2:65296651-65296670 | MS.gene21179:intron | 30.0% | |
| ! | AAGTTGTTGCATTTTATGGA+TGG | + | chr1.2:65298793-65298812 | MS.gene21179:intron | 30.0% |
| ! | GAAAGAGAAAGTAAAGCTTT+TGG | + | chr1.2:65297570-65297589 | MS.gene21179:intron | 30.0% |
| !! | TGAAGTGGATTGGAATAAAA+CGG | - | chr1.2:65297840-65297859 | None:intergenic | 30.0% |
| AAAATGCTCATAGCTCCTAT+AGG | + | chr1.2:65298110-65298129 | MS.gene21179:CDS | 35.0% | |
| AAACCAATTAAACCGGTAAG+CGG | + | chr1.2:65296565-65296584 | MS.gene21179:intron | 35.0% | |
| AAATGCAACAACTTCAAAGC+TGG | - | chr1.2:65298787-65298806 | None:intergenic | 35.0% | |
| AACAAATCATCAATAACCCC+AGG | - | chr1.2:65296910-65296929 | None:intergenic | 35.0% | |
| AACTCTCAAAACCAAAATGG+TGG | - | chr1.2:65297719-65297738 | None:intergenic | 35.0% | |
| AATTCTGTAGACCTATCAGA+TGG | + | chr1.2:65298327-65298346 | MS.gene21179:CDS | 35.0% | |
| ACAGCTATAATCAGCAAAGT+TGG | - | chr1.2:65298888-65298907 | None:intergenic | 35.0% | |
| ACATGAAAAAACCAAGGGAT+CGG | - | chr1.2:65298739-65298758 | None:intergenic | 35.0% | |
| ACATTGTATTACGGTATGTC+TGG | - | chr1.2:65297883-65297902 | None:intergenic | 35.0% | |
| ACCAAAACCATGGTTTCAAA+AGG | + | chr1.2:65297251-65297270 | MS.gene21179:intron | 35.0% | |
| ATATGGAGTTCCATTACTCA+TGG | + | chr1.2:65298859-65298878 | MS.gene21179:CDS | 35.0% | |
| ATTCCATTAGAACAAAGCGT+TGG | - | chr1.2:65296708-65296727 | None:intergenic | 35.0% | |
| CAGCTATAATCAGCAAAGTT+GGG | - | chr1.2:65298887-65298906 | None:intergenic | 35.0% | |
| CCAAACTCTCAAAACCAAAA+TGG | - | chr1.2:65297722-65297741 | None:intergenic | 35.0% | |
| GAAAATTACCGTAGCTTCTA+TGG | - | chr1.2:65297171-65297190 | None:intergenic | 35.0% | |
| GAATGCAAAACTCTCTTGAT+CGG | + | chr1.2:65296479-65296498 | MS.gene21179:CDS | 35.0% | |
| GGTATAGATCAGGTATGTTT+GGG | + | chr1.2:65297740-65297759 | MS.gene21179:intron | 35.0% | |
| TAGAGTTGAATGAAGTGGAT+TGG | - | chr1.2:65297850-65297869 | None:intergenic | 35.0% | |
| TAGTGCCTTTCATCATTAGA+CGG | - | chr1.2:65297136-65297155 | None:intergenic | 35.0% | |
| TCATAATAAGCACTTGTGAG+CGG | + | chr1.2:65297521-65297540 | MS.gene21179:intron | 35.0% | |
| TCTTCTTCTTCATCTTCATC+AGG | + | chr1.2:65296762-65296781 | MS.gene21179:intron | 35.0% | |
| TGGTATAGAGTTGAATGAAG+TGG | - | chr1.2:65297855-65297874 | None:intergenic | 35.0% | |
| TGGTATAGATCAGGTATGTT+TGG | + | chr1.2:65297739-65297758 | MS.gene21179:intron | 35.0% | |
| TTACTGCACTTACTTGTCAA+TGG | + | chr1.2:65298283-65298302 | MS.gene21179:CDS | 35.0% | |
| TTAGGTTACCTGAACCAATT+TGG | - | chr1.2:65296950-65296969 | None:intergenic | 35.0% | |
| TTATAGAGCTCCAAAAGGAA+TGG | - | chr1.2:65298092-65298111 | None:intergenic | 35.0% | |
| TTCCTTACAAACCAAAACCA+TGG | + | chr1.2:65297241-65297260 | MS.gene21179:intron | 35.0% | |
| TTGAGAGTTTGGTATAGATC+AGG | + | chr1.2:65297730-65297749 | MS.gene21179:intron | 35.0% | |
| TTTCAGTCAGGATTTGAACT+CGG | + | chr1.2:65298664-65298683 | MS.gene21179:intron | 35.0% | |
| ! | ATTCCAACGCTTTGTTCTAA+TGG | + | chr1.2:65296702-65296721 | MS.gene21179:intron | 35.0% |
| ! | CAATTTGTTTCGCACCAAAT+TGG | + | chr1.2:65296933-65296952 | MS.gene21179:CDS | 35.0% |
| ! | GAGAGTTTTGCATTCCATTA+AGG | - | chr1.2:65296474-65296493 | None:intergenic | 35.0% |
| ! | GCATTTTATAGAGCTCCAAA+AGG | - | chr1.2:65298097-65298116 | None:intergenic | 35.0% |
| ! | TAGCACTTATGTCTTGTTAC+AGG | + | chr1.2:65298040-65298059 | MS.gene21179:intron | 35.0% |
| ! | TCTACAGAATTGACTTTGCA+GGG | - | chr1.2:65298318-65298337 | None:intergenic | 35.0% |
| ! | TGTTACAGGTACGAATTTTG+AGG | + | chr1.2:65298054-65298073 | MS.gene21179:intron | 35.0% |
| ! | TTTGTTTCCTCCATTCCTTT+TGG | + | chr1.2:65298079-65298098 | MS.gene21179:CDS | 35.0% |
| !! | AGCTGTTTTCATAAGCTATC+TGG | - | chr1.2:65297430-65297449 | None:intergenic | 35.0% |
| !! | ATTAGAACAAAGCGTTGGAA+TGG | - | chr1.2:65296703-65296722 | None:intergenic | 35.0% |
| !! | ATTTGGTGCGAAACAAATTG+AGG | - | chr1.2:65296933-65296952 | None:intergenic | 35.0% |
| !!! | AACCATGGTTTTGGTTTGTA+AGG | - | chr1.2:65297246-65297265 | None:intergenic | 35.0% |
| !!! | ACCTTTTGAAACCATGGTTT+TGG | - | chr1.2:65297255-65297274 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTTTGAGAGTT+TGG | + | chr1.2:65297719-65297738 | MS.gene21179:intron | 35.0% |
| !!! | GAATTTGATGTTTTTGGGGA+TGG | + | chr1.2:65297680-65297699 | MS.gene21179:intron | 35.0% |
| AAAGAGTGAATACAAGCCTG+GGG | + | chr1.2:65296891-65296910 | MS.gene21179:CDS | 40.0% | |
| AAAGTTGCCGCTATAATGGT+TGG | + | chr1.2:65298140-65298159 | MS.gene21179:CDS | 40.0% | |
| AACCTGTGTTGGAAACTTAC+AGG | - | chr1.2:65298527-65298546 | None:intergenic | 40.0% | |
| ACTATAACAGGAAGTGGGAT+GGG | + | chr1.2:65297066-65297085 | MS.gene21179:intron | 40.0% | |
| ACTTACTTGTCAATGGCTCA+TGG | + | chr1.2:65298290-65298309 | MS.gene21179:CDS | 40.0% | |
| AGACTCACCAACCATTATAG+CGG | - | chr1.2:65298150-65298169 | None:intergenic | 40.0% | |
| AGTCATAAACACACAGCGAA+AGG | - | chr1.2:65298385-65298404 | None:intergenic | 40.0% | |
| ATCCTGACTGAAACAATCAC+TGG | - | chr1.2:65298657-65298676 | None:intergenic | 40.0% | |
| ATCTTCATCAGGACCCAAAA+CGG | + | chr1.2:65296773-65296792 | MS.gene21179:intron | 40.0% | |
| ATGGAACCTCATGGAATAGT+GGG | + | chr1.2:65298346-65298365 | MS.gene21179:CDS | 40.0% | |
| CAAAGAGTGAATACAAGCCT+GGG | + | chr1.2:65296890-65296909 | MS.gene21179:CDS | 40.0% | |
| CAATTAGTCCGTCATATCCA+GGG | - | chr1.2:65297103-65297122 | None:intergenic | 40.0% | |
| CTCCATATGATCCTTGAAGA+AGG | - | chr1.2:65298847-65298866 | None:intergenic | 40.0% | |
| CTTACTTGTCAATGGCTCAT+GGG | + | chr1.2:65298291-65298310 | MS.gene21179:CDS | 40.0% | |
| GAAGAATCACTAACCTGTGT+TGG | - | chr1.2:65298538-65298557 | None:intergenic | 40.0% | |
| GACCGAGGGTAACAAAATTA+TGG | + | chr1.2:65298631-65298650 | MS.gene21179:intron | 40.0% | |
| GACCTTCTTCAAGGATCATA+TGG | + | chr1.2:65298842-65298861 | MS.gene21179:intron | 40.0% | |
| GCTAACCGTCTAATGATGAA+AGG | + | chr1.2:65297128-65297147 | MS.gene21179:CDS | 40.0% | |
| GGTGTATGTGTATCCAAACA+GGG | + | chr1.2:65297542-65297561 | MS.gene21179:intron | 40.0% | |
| TACCGTAGCTTCTATGGTAT+CGG | - | chr1.2:65297165-65297184 | None:intergenic | 40.0% | |
| TACTATAACAGGAAGTGGGA+TGG | + | chr1.2:65297065-65297084 | MS.gene21179:intron | 40.0% | |
| TAGATCAGGTATGTTTGGGT+TGG | + | chr1.2:65297744-65297763 | MS.gene21179:intron | 40.0% | |
| TCAAAGAGTGAATACAAGCC+TGG | + | chr1.2:65296889-65296908 | MS.gene21179:CDS | 40.0% | |
| TCAATTAGTCCGTCATATCC+AGG | - | chr1.2:65297104-65297123 | None:intergenic | 40.0% | |
| TGTCGAAAGATGCAAGTATC+TGG | + | chr1.2:65298468-65298487 | MS.gene21179:CDS | 40.0% | |
| ! | AAGGCGCTAAGTATTGTTGT+TGG | + | chr1.2:65296670-65296689 | MS.gene21179:intron | 40.0% |
| ! | AAGTGCTAACAAACTTGCTC+TGG | - | chr1.2:65298028-65298047 | None:intergenic | 40.0% |
| ! | CAGAAGATGCAAACCGTTTT+GGG | - | chr1.2:65296789-65296808 | None:intergenic | 40.0% |
| ! | GATATCTAGAGTTTGACCGA+GGG | + | chr1.2:65298617-65298636 | MS.gene21179:intron | 40.0% |
| ! | GGCCATAATTTTGTTACCCT+CGG | - | chr1.2:65298636-65298655 | None:intergenic | 40.0% |
| ! | GTCTACAGAATTGACTTTGC+AGG | - | chr1.2:65298319-65298338 | None:intergenic | 40.0% |
| ! | TTACGGTATGTCTGGAATTG+TGG | - | chr1.2:65297875-65297894 | None:intergenic | 40.0% |
| !! | TCACTAGCTTGTTACGTTCA+GGG | - | chr1.2:65298216-65298235 | None:intergenic | 40.0% |
| !!! | TTGATGTTTTTGGGGATGGA+TGG | + | chr1.2:65297684-65297703 | MS.gene21179:intron | 40.0% |
| AACATTTGAGTCCGATCCCT+TGG | + | chr1.2:65298725-65298744 | MS.gene21179:intron | 45.0% | |
| AAGTTGGGCTCCATGAGTAA+TGG | - | chr1.2:65298872-65298891 | None:intergenic | 45.0% | |
| ACCTATCAGATGGAACCTCA+TGG | + | chr1.2:65298337-65298356 | MS.gene21179:CDS | 45.0% | |
| AGGCAAAGTTGCCGCTATAA+TGG | + | chr1.2:65298136-65298155 | MS.gene21179:CDS | 45.0% | |
| ATATCCCTTCCCATGAGAAC+TGG | - | chr1.2:65298602-65298621 | None:intergenic | 45.0% | |
| ATGCTCATAGCTCCTATAGG+TGG | + | chr1.2:65298113-65298132 | MS.gene21179:CDS | 45.0% | |
| CACCTGTAAGTTTCCAACAC+AGG | + | chr1.2:65298522-65298541 | MS.gene21179:CDS | 45.0% | |
| CGAAAGATGCAAGTATCTGG+AGG | + | chr1.2:65298471-65298490 | MS.gene21179:CDS | 45.0% | |
| CGAAGAAACCCTGGATATGA+CGG | + | chr1.2:65297092-65297111 | MS.gene21179:CDS | 45.0% | |
| CGGAGAGTTAAAGTGAAGTG+TGG | + | chr1.2:65296603-65296622 | MS.gene21179:intron | 45.0% | |
| CGGTGTATGTGTATCCAAAC+AGG | + | chr1.2:65297541-65297560 | MS.gene21179:intron | 45.0% | |
| CTCCGATACCATAGAAGCTA+CGG | + | chr1.2:65297160-65297179 | MS.gene21179:CDS | 45.0% | |
| GATGGAACCTCATGGAATAG+TGG | + | chr1.2:65298345-65298364 | MS.gene21179:CDS | 45.0% | |
| TAGAGCTCCAAAAGGAATGG+AGG | - | chr1.2:65298089-65298108 | None:intergenic | 45.0% | |
| TCCATGAGGTTCCATCTGAT+AGG | - | chr1.2:65298341-65298360 | None:intergenic | 45.0% | |
| TGGAACCTCATGGAATAGTG+GGG | + | chr1.2:65298347-65298366 | MS.gene21179:CDS | 45.0% | |
| ! | GCAGAAGATGCAAACCGTTT+TGG | - | chr1.2:65296790-65296809 | None:intergenic | 45.0% |
| ! | GCGCTAAGTATTGTTGTTGG+CGG | + | chr1.2:65296673-65296692 | MS.gene21179:intron | 45.0% |
| ! | GGATATCTAGAGTTTGACCG+AGG | + | chr1.2:65298616-65298635 | MS.gene21179:intron | 45.0% |
| ! | GGCAAAGATCTCCACCATTT+TGG | + | chr1.2:65297705-65297724 | MS.gene21179:intron | 45.0% |
| ! | GTTTCGCACCAAATTGGTTC+AGG | + | chr1.2:65296939-65296958 | MS.gene21179:CDS | 45.0% |
| ! | TAACTCTCCGCGTTTGCTAA+GGG | - | chr1.2:65296593-65296612 | None:intergenic | 45.0% |
| ! | TTAACTCTCCGCGTTTGCTA+AGG | - | chr1.2:65296594-65296613 | None:intergenic | 45.0% |
| !! | ATCAGGTATGTTTGGGTTGG+TGG | + | chr1.2:65297747-65297766 | MS.gene21179:intron | 45.0% |
| !! | CACTAGCTTGTTACGTTCAG+GGG | - | chr1.2:65298215-65298234 | None:intergenic | 45.0% |
| !! | CTCACTAGCTTGTTACGTTC+AGG | - | chr1.2:65298217-65298236 | None:intergenic | 45.0% |
| !! | TCTCTTTCTAAGGCCCTGTT+TGG | - | chr1.2:65297558-65297577 | None:intergenic | 45.0% |
| CTCATAGCTCCTATAGGTGG+AGG | + | chr1.2:65298116-65298135 | MS.gene21179:CDS | 50.0% | |
| CTGGAGGAAAGCAAGTGTGT+TGG | + | chr1.2:65298487-65298506 | MS.gene21179:CDS | 50.0% | |
| CTTAAGCCGCCAGTTCTCAT+GGG | + | chr1.2:65298590-65298609 | MS.gene21179:intron | 50.0% | |
| GATCACCCCACTATTCCATG+AGG | - | chr1.2:65298355-65298374 | None:intergenic | 50.0% | |
| GCAACTTTGCCTCCACCTAT+AGG | - | chr1.2:65298128-65298147 | None:intergenic | 50.0% | |
| GGCCAGTGATTGTTTCAGTC+AGG | + | chr1.2:65298652-65298671 | MS.gene21179:intron | 50.0% | |
| GTTAACTGGAAGGGGCTGTT+AGG | - | chr1.2:65296968-65296987 | None:intergenic | 50.0% | |
| TCTTAAGCCGCCAGTTCTCA+TGG | + | chr1.2:65298589-65298608 | MS.gene21179:intron | 50.0% | |
| ! | AACTCTCCGCGTTTGCTAAG+GGG | - | chr1.2:65296592-65296611 | None:intergenic | 50.0% |
| !! | GGACCGCTTACCGGTTTAAT+TGG | - | chr1.2:65296571-65296590 | None:intergenic | 50.0% |
| GATGGGACTCGAAGAAACCC+TGG | + | chr1.2:65297083-65297102 | MS.gene21179:CDS | 55.0% | |
| TCCCTTCCCATGAGAACTGG+CGG | - | chr1.2:65298599-65298618 | None:intergenic | 55.0% | |
| TTGCTAAGGGGACCGCTTAC+CGG | - | chr1.2:65296580-65296599 | None:intergenic | 55.0% | |
| !! | GGTTGGTGGCTAGAGTGGAA+TGG | + | chr1.2:65297761-65297780 | MS.gene21179:intron | 55.0% |
| !! | GTTTGGGTTGGTGGCTAGAG+TGG | + | chr1.2:65297756-65297775 | MS.gene21179:intron | 55.0% |
| AGCCGCCAGTTCTCATGGGA+AGG | + | chr1.2:65298594-65298613 | MS.gene21179:intron | 60.0% | |
| AGCGGTCCCCTTAGCAAACG+CGG | + | chr1.2:65296583-65296602 | MS.gene21179:intron | 60.0% | |
| GCCGCCAGTTCTCATGGGAA+GGG | + | chr1.2:65298595-65298614 | MS.gene21179:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65296463 | 65298909 | 65296463 | ID=MS.gene21179 |
| chr1.2 | mRNA | 65296463 | 65298909 | 65296463 | ID=MS.gene21179.t1;Parent=MS.gene21179 |
| chr1.2 | exon | 65296463 | 65296500 | 65296463 | ID=MS.gene21179.t1.exon1;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65296463 | 65296500 | 65296463 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65296871 | 65296960 | 65296871 | ID=MS.gene21179.t1.exon2;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65296871 | 65296960 | 65296871 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65297076 | 65297181 | 65297076 | ID=MS.gene21179.t1.exon3;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65297076 | 65297181 | 65297076 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65298062 | 65298161 | 65298062 | ID=MS.gene21179.t1.exon4;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65298062 | 65298161 | 65298062 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65298277 | 65298368 | 65298277 | ID=MS.gene21179.t1.exon5;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65298277 | 65298368 | 65298277 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65298463 | 65298543 | 65298463 | ID=MS.gene21179.t1.exon6;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65298463 | 65298543 | 65298463 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| chr1.2 | exon | 65298843 | 65298909 | 65298843 | ID=MS.gene21179.t1.exon7;Parent=MS.gene21179.t1 |
| chr1.2 | CDS | 65298843 | 65298909 | 65298843 | ID=cds.MS.gene21179.t1;Parent=MS.gene21179.t1 |
| Gene Sequence |
| Protein sequence |
