Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21783.t1 | XP_003610807.1 | 94.8 | 135 | 6 | 1 | 36 | 169 | 32 | 166 | 7.90E-63 | 250 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21783.t1 | Q93Z17 | 78.9 | 128 | 20 | 1 | 49 | 169 | 46 | 173 | 8.1e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21783.t1 | G7K4R8 | 94.8 | 135 | 6 | 1 | 36 | 169 | 32 | 166 | 5.7e-63 | 250.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene21783 | 0.820987 | 5.13E-53 | -1.69E-46 |
| MS.gene049255 | MS.gene21783 | 0.843466 | 1.38E-58 | -1.69E-46 |
| MS.gene049341 | MS.gene21783 | 0.835047 | 2.11E-56 | -1.69E-46 |
| MS.gene050020 | MS.gene21783 | 0.81867 | 1.74E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene21783 | 0.823036 | 1.72E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene21783 | 0.839439 | 1.58E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene21783 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene21783 | 0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene21783 | 0.82623 | 3.04E-54 | -1.69E-46 |
| MS.gene051243 | MS.gene21783 | 0.802561 | 5.29E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene21783 | 0.848434 | 6.14E-60 | -1.69E-46 |
| MS.gene05134 | MS.gene21783 | 0.834395 | 3.07E-56 | -1.69E-46 |
| MS.gene05157 | MS.gene21783 | 0.821007 | 5.07E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene21783 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene21783 | 0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene21783 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene21783 | 0.803241 | 3.83E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene21783 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene21783 | 0.801277 | 9.71E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene21783 | 0.825558 | 4.39E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene21783 | 0.816021 | 6.85E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene21783 | 0.806798 | 6.90E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene21783 | 0.802402 | 5.71E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene21783 | 0.811619 | 6.40E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene21783 | 0.840598 | 7.90E-58 | -1.69E-46 |
| MS.gene055623 | MS.gene21783 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene21783 | 0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene21783 | 0.801668 | 8.08E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene21783 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene21783 | 0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene21783 | 0.834347 | 3.16E-56 | -1.69E-46 |
| MS.gene057234 | MS.gene21783 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene21783 | 0.821337 | 4.26E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene21783 | 0.844068 | 9.50E-59 | -1.69E-46 |
| MS.gene058168 | MS.gene21783 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene21783 | 0.852607 | 4.13E-61 | -1.69E-46 |
| MS.gene059249 | MS.gene21783 | 0.808323 | 3.28E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene21783 | 0.805568 | 1.25E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene21783 | 0.801234 | 9.91E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene21783 | 0.812609 | 3.89E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene21783 | 0.825319 | 5.00E-54 | -1.69E-46 |
| MS.gene059937 | MS.gene21783 | 0.817742 | 2.82E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene21783 | 0.816381 | 5.69E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene21783 | 0.85558 | 5.74E-62 | -1.69E-46 |
| MS.gene060587 | MS.gene21783 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene21783 | 0.842245 | 2.91E-58 | -1.69E-46 |
| MS.gene060917 | MS.gene21783 | 0.800427 | 1.45E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21783.t1 | MTR_5g096490 | 96.923 | 130 | 4 | 0 | 40 | 169 | 4 | 133 | 4.57e-88 | 254 |
| MS.gene21783.t1 | MTR_5g007240 | 92.086 | 139 | 10 | 1 | 32 | 169 | 28 | 166 | 7.95e-80 | 234 |
| MS.gene21783.t1 | MTR_5g096490 | 92.086 | 139 | 10 | 1 | 32 | 169 | 28 | 166 | 7.95e-80 | 234 |
| MS.gene21783.t1 | MTR_4g051390 | 42.975 | 121 | 67 | 1 | 50 | 168 | 1 | 121 | 6.29e-31 | 108 |
| MS.gene21783.t1 | MTR_1779s0020 | 42.975 | 121 | 67 | 1 | 50 | 168 | 1 | 121 | 8.99e-30 | 105 |
| MS.gene21783.t1 | MTR_2g087550 | 41.667 | 120 | 68 | 1 | 51 | 168 | 2 | 121 | 7.22e-28 | 103 |
| MS.gene21783.t1 | MTR_0002s0780 | 41.739 | 115 | 64 | 1 | 57 | 168 | 135 | 249 | 7.41e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21783.t1 | AT5G46160 | 78.030 | 132 | 22 | 1 | 45 | 169 | 42 | 173 | 5.79e-67 | 202 |
| MS.gene21783.t1 | AT5G46160 | 78.030 | 132 | 22 | 1 | 45 | 169 | 41 | 172 | 5.86e-67 | 202 |
| MS.gene21783.t1 | AT1G17560 | 60.131 | 153 | 32 | 3 | 45 | 168 | 43 | 195 | 5.42e-53 | 167 |
| MS.gene21783.t1 | AT1G17560 | 60.131 | 153 | 32 | 3 | 45 | 168 | 20 | 172 | 9.47e-53 | 166 |
| MS.gene21783.t1 | ATCG00780 | 44.628 | 121 | 65 | 1 | 50 | 168 | 1 | 121 | 1.79e-32 | 112 |
Find 40 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGGTTGTGGACAATTC+TGG | 0.240087 | 5.2:-1654273 | MS.gene21783:CDS |
| GGACAATTCTGGAGCTAAAA+AGG | 0.321429 | 5.2:-1654262 | MS.gene21783:CDS |
| GACAAACAAGGGCAGCCTAT+TGG | 0.362318 | 5.2:-1654039 | MS.gene21783:CDS |
| ACAAACAAGGGCAGCCTATT+GGG | 0.366691 | 5.2:-1654038 | MS.gene21783:CDS |
| GTCAAGATCCTTACCTTAGC+TGG | 0.374088 | 5.2:-1653967 | MS.gene21783:CDS |
| GTGAAGGAAGCACATCCTAA+TGG | 0.397241 | 5.2:-1654174 | MS.gene21783:CDS |
| TGCCTCAACTCATGAGGAAC+TGG | 0.420523 | 5.2:+1654000 | None:intergenic |
| CCGAAAACTCTGGTCCCAAT+AGG | 0.444490 | 5.2:+1654024 | None:intergenic |
| CGCGCGTTGGCAGGGAAGAA+AGG | 0.457182 | 5.2:-1654228 | MS.gene21783:CDS |
| GGGAAGAAAGGAGCAAGATT+AGG | 0.462937 | 5.2:-1654216 | MS.gene21783:CDS |
| ATGTGCATACGCGCGTTGGC+AGG | 0.463329 | 5.2:-1654237 | MS.gene21783:CDS |
| CGTGTTTGACTTGTAAATAG+AGG | 0.479650 | 5.2:+1654767 | None:intergenic |
| TCCTAATGGAAAAGTGAAGA+AGG | 0.493277 | 5.2:-1654160 | MS.gene21783:CDS |
| CTGCCATCACACCTACCCTT+TGG | 0.494271 | 5.2:+1654099 | None:intergenic |
| TAAATAGAGGGAGTGATTAG+TGG | 0.506799 | 5.2:+1654780 | None:intergenic |
| AACAGTCCTCATCTGTATGA+AGG | 0.520727 | 5.2:+1654296 | None:intergenic |
| ATGCCAAAGGGTAGGTGTGA+TGG | 0.533908 | 5.2:-1654102 | MS.gene21783:CDS |
| TTAGTGGCACAAGTGCAAAC+TGG | 0.534568 | 5.2:+1654796 | None:intergenic |
| CAATATGCCCAGCTAAGGTA+AGG | 0.539065 | 5.2:+1653959 | None:intergenic |
| CATTGCTGCACGAACAACTA+CGG | 0.550383 | 5.2:+1654122 | None:intergenic |
| AGGAACTGGTCCGAAAACTC+TGG | 0.550755 | 5.2:+1654014 | None:intergenic |
| TCAAGATCCTTACCTTAGCT+GGG | 0.562147 | 5.2:-1653966 | MS.gene21783:CDS |
| CTATGCAATATGCCCAGCTA+AGG | 0.565511 | 5.2:+1653954 | None:intergenic |
| TGTTCGTGCAGCAATGCCAA+AGG | 0.568662 | 5.2:-1654115 | MS.gene21783:CDS |
| GTTAAAATGTCAACTTCCCC+AGG | 0.577318 | 5.2:-1655056 | MS.gene21783:intron |
| TGTGCATACGCGCGTTGGCA+GGG | 0.580036 | 5.2:-1654236 | MS.gene21783:CDS |
| GTGTTTGACTTGTAAATAGA+GGG | 0.580442 | 5.2:+1654768 | None:intergenic |
| GACCAGTTCCTCATGAGTTG+AGG | 0.580661 | 5.2:-1654002 | MS.gene21783:CDS |
| ACAGATGAGGACTGTTCTGA+AGG | 0.580846 | 5.2:-1654289 | MS.gene21783:CDS |
| GAGGACTGTTCTGAAGGTTG+TGG | 0.589490 | 5.2:-1654283 | MS.gene21783:CDS |
| GGTGATGTGCATACGCGCGT+TGG | 0.592616 | 5.2:-1654241 | MS.gene21783:CDS |
| GTTCGTGCAGCAATGCCAAA+GGG | 0.599925 | 5.2:-1654114 | MS.gene21783:CDS |
| CCTAATGGAAAAGTGAAGAA+GGG | 0.626002 | 5.2:-1654159 | MS.gene21783:CDS |
| TTCTTCTGCCTCAACTCATG+AGG | 0.632900 | 5.2:+1653994 | None:intergenic |
| GTGCAGCAATGCCAAAGGGT+AGG | 0.641762 | 5.2:-1654110 | MS.gene21783:CDS |
| GTTGTGCTTGTTGACAAACA+AGG | 0.656177 | 5.2:-1654051 | MS.gene21783:CDS |
| TATGATACAAGCATCAGTGA+AGG | 0.662607 | 5.2:-1654190 | MS.gene21783:CDS |
| AACGAACCTTCATACAGATG+AGG | 0.663831 | 5.2:-1654302 | MS.gene21783:CDS |
| TTGTGCTTGTTGACAAACAA+GGG | 0.669343 | 5.2:-1654050 | MS.gene21783:CDS |
| GGGTAGGTGTGATGGCAGTG+AGG | 0.701393 | 5.2:-1654094 | MS.gene21783:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCATAAGAAAATAATGTTA+AGG | + | chr5.2:1654529-1654548 | None:intergenic | 20.0% |
| !! | TAATATATGAAATTTCAGAG+TGG | + | chr5.2:1654191-1654210 | None:intergenic | 20.0% |
| !! | TTCATACTTTCATTATTACA+TGG | - | chr5.2:1654090-1654109 | MS.gene21783:CDS | 20.0% |
| !!! | CAAGAATTTTTATGTTGATA+AGG | - | chr5.2:1654287-1654306 | MS.gene21783:CDS | 20.0% |
| !!! | GTTTTAGTAAACTAACAATT+TGG | + | chr5.2:1654059-1654078 | None:intergenic | 20.0% |
| !!! | AAACATTGATTCTATCCTTT+TGG | - | chr5.2:1654024-1654043 | MS.gene21783:CDS | 25.0% |
| AAAACAGTTATTCTCTTACC+TGG | + | chr5.2:1653992-1654011 | None:intergenic | 30.0% | |
| AAACAGTTATTCTCTTACCT+GGG | + | chr5.2:1653991-1654010 | None:intergenic | 30.0% | |
| AAGATTACCAATACTGTGTT+TGG | + | chr5.2:1654554-1654573 | None:intergenic | 30.0% | |
| ! | GAAAGTATGAAACTACAACA+TGG | + | chr5.2:1654081-1654100 | None:intergenic | 30.0% |
| ! | TATTTTTCTCAGGTACATGT+AGG | - | chr5.2:1654466-1654485 | MS.gene21783:intron | 30.0% |
| !! | GTGTTTGACTTGTAAATAGA+GGG | + | chr5.2:1654262-1654281 | None:intergenic | 30.0% |
| !!! | ACTGTTGTTTTCTACAATCT+AGG | + | chr5.2:1654580-1654599 | None:intergenic | 30.0% |
| !!! | ATGCAACAGTTATTTTTCTC+AGG | - | chr5.2:1654456-1654475 | MS.gene21783:intron | 30.0% |
| !!! | CATTTTAACTTCCGATGAAA+AGG | + | chr5.2:1653960-1653979 | None:intergenic | 30.0% |
| AACAGTTATTCTCTTACCTG+GGG | + | chr5.2:1653990-1654009 | None:intergenic | 35.0% | |
| CCTAATGGAAAAGTGAAGAA+GGG | - | chr5.2:1654868-1654887 | MS.gene21783:intron | 35.0% | |
| TAAATAGAGGGAGTGATTAG+TGG | + | chr5.2:1654250-1654269 | None:intergenic | 35.0% | |
| TATGATACAAGCATCAGTGA+AGG | - | chr5.2:1654837-1654856 | MS.gene21783:intron | 35.0% | |
| TCCTAATGGAAAAGTGAAGA+AGG | - | chr5.2:1654867-1654886 | MS.gene21783:intron | 35.0% | |
| TGTGTGTAAGAAACTAAGCA+TGG | + | chr5.2:1654655-1654674 | None:intergenic | 35.0% | |
| ! | AGACATTGTTTTCTTCAGGA+AGG | + | chr5.2:1654689-1654708 | None:intergenic | 35.0% |
| ! | AGGAAGACATTGTTTTCTTC+AGG | + | chr5.2:1654693-1654712 | None:intergenic | 35.0% |
| ! | TTGCCAATGCTCATGTTTTA+GGG | + | chr5.2:1654126-1654145 | None:intergenic | 35.0% |
| ! | TTGTGCTTGTTGACAAACAA+GGG | - | chr5.2:1654977-1654996 | MS.gene21783:intron | 35.0% |
| ! | TTTGCCAATGCTCATGTTTT+AGG | + | chr5.2:1654127-1654146 | None:intergenic | 35.0% |
| !! | CGTGTTTGACTTGTAAATAG+AGG | + | chr5.2:1654263-1654282 | None:intergenic | 35.0% |
| !!! | CATTGATTCTATCCTTTTGG+TGG | - | chr5.2:1654027-1654046 | MS.gene21783:CDS | 35.0% |
| AACAGTCCTCATCTGTATGA+AGG | + | chr5.2:1654734-1654753 | None:intergenic | 40.0% | |
| AACGAACCTTCATACAGATG+AGG | - | chr5.2:1654725-1654744 | MS.gene21783:intron | 40.0% | |
| ACATGTATCTTTGCACTGCA+TGG | + | chr5.2:1654610-1654629 | None:intergenic | 40.0% | |
| AGAGTGGTTGCAAAATGTAG+TGG | + | chr5.2:1654175-1654194 | None:intergenic | 40.0% | |
| ATGCTTGCCAAACACAGTAT+TGG | - | chr5.2:1654544-1654563 | MS.gene21783:intron | 40.0% | |
| ATTTGGACATCACCACCAAA+AGG | + | chr5.2:1654042-1654061 | None:intergenic | 40.0% | |
| GTTAAAATGTCAACTTCCCC+AGG | - | chr5.2:1653971-1653990 | MS.gene21783:CDS | 40.0% | |
| TACATGTAGGAATCAGTTGC+AGG | - | chr5.2:1654479-1654498 | MS.gene21783:intron | 40.0% | |
| TCAAGATCCTTACCTTAGCT+GGG | - | chr5.2:1655061-1655080 | MS.gene21783:CDS | 40.0% | |
| TTAATCCACCGAACAGAGAA+CGG | + | chr5.2:1654393-1654412 | None:intergenic | 40.0% | |
| ! | GTTGTGCTTGTTGACAAACA+AGG | - | chr5.2:1654976-1654995 | MS.gene21783:intron | 40.0% |
| !! | CCCTTCTTCACTTTTCCATT+AGG | + | chr5.2:1654871-1654890 | None:intergenic | 40.0% |
| !! | GGACAATTCTGGAGCTAAAA+AGG | - | chr5.2:1654765-1654784 | MS.gene21783:CDS | 40.0% |
| ACAAACAAGGGCAGCCTATT+GGG | - | chr5.2:1654989-1655008 | MS.gene21783:intron | 45.0% | |
| ACAGATGAGGACTGTTCTGA+AGG | - | chr5.2:1654738-1654757 | MS.gene21783:intron | 45.0% | |
| CAATATGCCCAGCTAAGGTA+AGG | + | chr5.2:1655071-1655090 | None:intergenic | 45.0% | |
| CAGAGAACGGCTTACTAGTT+TGG | + | chr5.2:1654380-1654399 | None:intergenic | 45.0% | |
| CATTGCTGCACGAACAACTA+CGG | + | chr5.2:1654908-1654927 | None:intergenic | 45.0% | |
| CTAGTAAGCCGTTCTCTGTT+CGG | - | chr5.2:1654382-1654401 | MS.gene21783:intron | 45.0% | |
| CTATGCAATATGCCCAGCTA+AGG | + | chr5.2:1655076-1655095 | None:intergenic | 45.0% | |
| CTGAAGGTTGTGGACAATTC+TGG | - | chr5.2:1654754-1654773 | MS.gene21783:CDS | 45.0% | |
| GCTCCCTAAAACATGAGCAT+TGG | - | chr5.2:1654120-1654139 | MS.gene21783:CDS | 45.0% | |
| GGGAAGAAAGGAGCAAGATT+AGG | - | chr5.2:1654811-1654830 | MS.gene21783:CDS | 45.0% | |
| GGTTCGTTGTTGCTGCAAAA+AGG | + | chr5.2:1654713-1654732 | None:intergenic | 45.0% | |
| GTCAAGATCCTTACCTTAGC+TGG | - | chr5.2:1655060-1655079 | MS.gene21783:CDS | 45.0% | |
| GTGACGTGGTAAATAGACCA+GGG | + | chr5.2:1654426-1654445 | None:intergenic | 45.0% | |
| TGACGTGGTAAATAGACCAG+GGG | + | chr5.2:1654425-1654444 | None:intergenic | 45.0% | |
| TGTGACGTGGTAAATAGACC+AGG | + | chr5.2:1654427-1654446 | None:intergenic | 45.0% | |
| TTAGTGGCACAAGTGCAAAC+TGG | + | chr5.2:1654234-1654253 | None:intergenic | 45.0% | |
| TTCTTCTGCCTCAACTCATG+AGG | + | chr5.2:1655036-1655055 | None:intergenic | 45.0% | |
| ! | CCTATTGGGACCAGAGTTTT+CGG | - | chr5.2:1655003-1655022 | MS.gene21783:intron | 45.0% |
| ! | GTGAAGGAAGCACATCCTAA+TGG | - | chr5.2:1654853-1654872 | MS.gene21783:intron | 45.0% |
| !! | TAATAAAAATATTTATTAAG+TGG | + | chr5.2:1654324-1654343 | None:intergenic | 5.0% |
| AGGAACTGGTCCGAAAACTC+TGG | + | chr5.2:1655016-1655035 | None:intergenic | 50.0% | |
| ATGCCAAAGGGTAGGTGTGA+TGG | - | chr5.2:1654925-1654944 | MS.gene21783:intron | 50.0% | |
| CCGAAAACTCTGGTCCCAAT+AGG | + | chr5.2:1655006-1655025 | None:intergenic | 50.0% | |
| GACAAACAAGGGCAGCCTAT+TGG | - | chr5.2:1654988-1655007 | MS.gene21783:intron | 50.0% | |
| GACCAGTTCCTCATGAGTTG+AGG | - | chr5.2:1655025-1655044 | MS.gene21783:intron | 50.0% | |
| GCATGTCATCTCATGTGACG+TGG | + | chr5.2:1654440-1654459 | None:intergenic | 50.0% | |
| GGATTAAGCAACAGTTCCCC+TGG | - | chr5.2:1654406-1654425 | MS.gene21783:intron | 50.0% | |
| GTTCGTGCAGCAATGCCAAA+GGG | - | chr5.2:1654913-1654932 | MS.gene21783:intron | 50.0% | |
| TGCCTCAACTCATGAGGAAC+TGG | + | chr5.2:1655030-1655049 | None:intergenic | 50.0% | |
| TGTTCGTGCAGCAATGCCAA+AGG | - | chr5.2:1654912-1654931 | MS.gene21783:intron | 50.0% | |
| !! | GAGGACTGTTCTGAAGGTTG+TGG | - | chr5.2:1654744-1654763 | MS.gene21783:CDS | 50.0% |
| CTGCCATCACACCTACCCTT+TGG | + | chr5.2:1654931-1654950 | None:intergenic | 55.0% | |
| GTAAGCCGTTCTCTGTTCGG+TGG | - | chr5.2:1654385-1654404 | MS.gene21783:intron | 55.0% | |
| GTGCAGCAATGCCAAAGGGT+AGG | - | chr5.2:1654917-1654936 | MS.gene21783:intron | 55.0% | |
| GGGTAGGTGTGATGGCAGTG+AGG | - | chr5.2:1654933-1654952 | MS.gene21783:intron | 60.0% | |
| GGTGATGTGCATACGCGCGT+TGG | - | chr5.2:1654786-1654805 | MS.gene21783:CDS | 60.0% | |
| ! | ATGTGCATACGCGCGTTGGC+AGG | - | chr5.2:1654790-1654809 | MS.gene21783:CDS | 60.0% |
| ! | TGTGCATACGCGCGTTGGCA+GGG | - | chr5.2:1654791-1654810 | MS.gene21783:CDS | 60.0% |
| ! | CGCGCGTTGGCAGGGAAGAA+AGG | - | chr5.2:1654799-1654818 | MS.gene21783:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1653954 | 1655095 | 1653954 | ID=MS.gene21783 |
| chr5.2 | mRNA | 1653954 | 1655095 | 1653954 | ID=MS.gene21783.t1;Parent=MS.gene21783 |
| chr5.2 | exon | 1655057 | 1655095 | 1655057 | ID=MS.gene21783.t1.exon1;Parent=MS.gene21783.t1 |
| chr5.2 | CDS | 1655057 | 1655095 | 1655057 | ID=cds.MS.gene21783.t1;Parent=MS.gene21783.t1 |
| chr5.2 | exon | 1654741 | 1654836 | 1654741 | ID=MS.gene21783.t1.exon2;Parent=MS.gene21783.t1 |
| chr5.2 | CDS | 1654741 | 1654836 | 1654741 | ID=cds.MS.gene21783.t1;Parent=MS.gene21783.t1 |
| chr5.2 | exon | 1653954 | 1654328 | 1653954 | ID=MS.gene21783.t1.exon3;Parent=MS.gene21783.t1 |
| chr5.2 | CDS | 1653954 | 1654328 | 1653954 | ID=cds.MS.gene21783.t1;Parent=MS.gene21783.t1 |
| Gene Sequence |
| Protein sequence |
