Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21867.t1 | P30077.1 | 100 | 389 | 0 | 0 | 1 | 389 | 1 | 389 | 6.00E-223 | 783.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21867.t1 | P30077 | 100.0 | 389 | 0 | 0 | 1 | 389 | 1 | 389 | 1.4e-225 | 783.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21867.t1 | A0A072UNH2 | 99.2 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 1.1e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene21867 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene21867 | -0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene21867 | 0.845848 | 3.14E-59 | -1.69E-46 |
| MS.gene050381 | MS.gene21867 | 0.855549 | 5.86E-62 | -1.69E-46 |
| MS.gene050883 | MS.gene21867 | 0.827727 | 1.33E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene21867 | 0.825355 | 4.91E-54 | -1.69E-46 |
| MS.gene053406 | MS.gene21867 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene21867 | 0.814808 | 1.28E-51 | -1.69E-46 |
| MS.gene053488 | MS.gene21867 | 0.805383 | 1.37E-49 | -1.69E-46 |
| MS.gene053561 | MS.gene21867 | 0.821944 | 3.08E-53 | -1.69E-46 |
| MS.gene054708 | MS.gene21867 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene21867 | 0.890054 | 1.39E-73 | -1.69E-46 |
| MS.gene055139 | MS.gene21867 | 0.807535 | 4.82E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene21867 | 0.84583 | 3.18E-59 | -1.69E-46 |
| MS.gene055202 | MS.gene21867 | 0.833006 | 6.83E-56 | -1.69E-46 |
| MS.gene055959 | MS.gene21867 | 0.866926 | 1.99E-65 | -1.69E-46 |
| MS.gene056298 | MS.gene21867 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene21867 | 0.802906 | 4.49E-49 | -1.69E-46 |
| MS.gene056311 | MS.gene21867 | 0.800826 | 1.20E-48 | -1.69E-46 |
| MS.gene056313 | MS.gene21867 | 0.848025 | 7.97E-60 | -1.69E-46 |
| MS.gene057550 | MS.gene21867 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene058041 | MS.gene21867 | -0.822914 | 1.84E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene21867 | 0.852525 | 4.36E-61 | -1.69E-46 |
| MS.gene058099 | MS.gene21867 | 0.841795 | 3.83E-58 | -1.69E-46 |
| MS.gene058108 | MS.gene21867 | 0.914432 | 1.93E-84 | -1.69E-46 |
| MS.gene058109 | MS.gene21867 | 0.920214 | 1.70E-87 | -1.69E-46 |
| MS.gene058111 | MS.gene21867 | 0.825591 | 4.31E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene21867 | 0.871224 | 8.05E-67 | -1.69E-46 |
| MS.gene058173 | MS.gene21867 | 0.869722 | 2.50E-66 | -1.69E-46 |
| MS.gene058175 | MS.gene21867 | 0.870915 | 1.02E-66 | -1.69E-46 |
| MS.gene058176 | MS.gene21867 | 0.804499 | 2.10E-49 | -1.69E-46 |
| MS.gene058179 | MS.gene21867 | 0.863877 | 1.82E-64 | -1.69E-46 |
| MS.gene058180 | MS.gene21867 | 0.861454 | 1.01E-63 | -1.69E-46 |
| MS.gene058840 | MS.gene21867 | 0.834494 | 2.90E-56 | -1.69E-46 |
| MS.gene059037 | MS.gene21867 | 0.886684 | 2.76E-72 | -1.69E-46 |
| MS.gene059038 | MS.gene21867 | 0.850825 | 1.32E-60 | -1.69E-46 |
| MS.gene059044 | MS.gene21867 | 0.809409 | 1.92E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene21867 | 0.850222 | 1.95E-60 | -1.69E-46 |
| MS.gene059943 | MS.gene21867 | 0.802155 | 6.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21867.t1 | MTR_5g007713 | 99.229 | 389 | 3 | 0 | 1 | 389 | 1 | 389 | 0.0 | 803 |
| MS.gene21867.t1 | MTR_5g007717 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 800 |
| MS.gene21867.t1 | MTR_1g098140 | 96.915 | 389 | 12 | 0 | 1 | 389 | 1 | 389 | 0.0 | 785 |
| MS.gene21867.t1 | MTR_1g097935 | 96.658 | 389 | 13 | 0 | 1 | 389 | 1 | 389 | 0.0 | 782 |
| MS.gene21867.t1 | MTR_7g016820 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21867.t1 | MTR_1g097910 | 96.401 | 389 | 14 | 0 | 1 | 389 | 1 | 389 | 0.0 | 781 |
| MS.gene21867.t1 | MTR_5g007730 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene21867.t1 | MTR_7g016800 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 780 |
| MS.gene21867.t1 | MTR_7g016700 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene21867.t1 | MTR_7g016720 | 96.144 | 389 | 15 | 0 | 1 | 389 | 1 | 389 | 0.0 | 777 |
| MS.gene21867.t1 | MTR_5g007760 | 95.887 | 389 | 16 | 0 | 1 | 389 | 1 | 389 | 0.0 | 775 |
| MS.gene21867.t1 | MTR_7g016780 | 95.630 | 389 | 17 | 0 | 1 | 389 | 1 | 389 | 0.0 | 775 |
| MS.gene21867.t1 | MTR_3g083920 | 91.237 | 388 | 34 | 0 | 1 | 388 | 1 | 388 | 0.0 | 753 |
| MS.gene21867.t1 | MTR_3g083910 | 89.948 | 388 | 39 | 0 | 1 | 388 | 1 | 388 | 0.0 | 748 |
| MS.gene21867.t1 | MTR_2g058470 | 87.404 | 389 | 49 | 0 | 1 | 389 | 1 | 389 | 0.0 | 719 |
| MS.gene21867.t1 | MTR_3g086260 | 82.732 | 388 | 67 | 0 | 1 | 388 | 1 | 388 | 0.0 | 690 |
| MS.gene21867.t1 | MTR_7g084300 | 79.949 | 389 | 78 | 0 | 1 | 389 | 1 | 389 | 0.0 | 673 |
| MS.gene21867.t1 | MTR_7g113405 | 95.380 | 303 | 14 | 0 | 87 | 389 | 1 | 303 | 0.0 | 596 |
| MS.gene21867.t1 | MTR_3g088675 | 66.324 | 389 | 131 | 0 | 1 | 389 | 1 | 389 | 0.0 | 580 |
| MS.gene21867.t1 | MTR_5g007740 | 80.675 | 326 | 63 | 0 | 64 | 389 | 1 | 326 | 0.0 | 554 |
| MS.gene21867.t1 | MTR_5g007723 | 69.444 | 396 | 74 | 5 | 12 | 389 | 32 | 398 | 0.0 | 536 |
| MS.gene21867.t1 | MTR_5g007770 | 78.333 | 300 | 32 | 2 | 70 | 369 | 1 | 267 | 4.56e-169 | 473 |
| MS.gene21867.t1 | MTR_3g088670 | 48.462 | 390 | 187 | 6 | 10 | 388 | 2 | 388 | 1.25e-128 | 375 |
| MS.gene21867.t1 | MTR_4g075560 | 41.579 | 380 | 215 | 4 | 11 | 387 | 13 | 388 | 1.19e-101 | 306 |
| MS.gene21867.t1 | MTR_4g078730 | 36.461 | 373 | 230 | 2 | 15 | 387 | 24 | 389 | 4.25e-91 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21867.t1 | AT5G13930 | 82.474 | 388 | 67 | 1 | 3 | 389 | 8 | 395 | 0.0 | 675 |
| MS.gene21867.t1 | AT4G34850 | 39.788 | 377 | 223 | 3 | 15 | 389 | 18 | 392 | 1.10e-96 | 294 |
| MS.gene21867.t1 | AT4G00040 | 38.520 | 392 | 229 | 6 | 1 | 387 | 1 | 385 | 2.87e-94 | 287 |
| MS.gene21867.t1 | AT1G02050 | 38.992 | 377 | 218 | 6 | 15 | 387 | 24 | 392 | 5.87e-86 | 266 |
| MS.gene21867.t1 | AT4G34850 | 39.375 | 320 | 191 | 2 | 72 | 389 | 1 | 319 | 1.76e-81 | 252 |
Find 101 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.117134 | 5.1:-2044798 | None:intergenic |
| CTTGTTGGACAAGCACTCTT+TGG | 0.251490 | 5.1:+2044735 | MS.gene21867:CDS |
| CTGATTATAATTCAATCTTC+TGG | 0.262797 | 5.1:+2044988 | MS.gene21867:CDS |
| TTATAATCAGAGATGTTTAA+TGG | 0.263273 | 5.1:-2044975 | None:intergenic |
| GTTTCTCAATTTCTGGTATT+GGG | 0.265654 | 5.1:-2044791 | None:intergenic |
| GGTTTCTCAATTTCTGGTAT+TGG | 0.273222 | 5.1:-2044792 | None:intergenic |
| AAGTGTGTAATCTTTGATTT+TGG | 0.298358 | 5.1:-2044468 | None:intergenic |
| CTTGACTGGGGTGTGTTGTT+TGG | 0.302662 | 5.1:+2045203 | MS.gene21867:CDS |
| AACCTATATTTGAGATGGTT+TGG | 0.308691 | 5.1:+2044811 | MS.gene21867:CDS |
| GCTTCGTTTGGCCAAGGACT+TGG | 0.325403 | 5.1:+2044620 | MS.gene21867:CDS |
| AGAGAAGTACTTAGTGAATA+TGG | 0.329263 | 5.1:+2045092 | MS.gene21867:CDS |
| GATCAAGTTGAACAAAAGTT+AGG | 0.336805 | 5.1:+2045041 | MS.gene21867:CDS |
| GTGTTGTTTGGCTTCGGACC+TGG | 0.373681 | 5.1:+2045215 | MS.gene21867:CDS |
| TGAATACATGGCACCTTCAT+TGG | 0.375324 | 5.1:+2044362 | MS.gene21867:CDS |
| TACCAACTCACAAAACTCTT+AGG | 0.382277 | 5.1:+2044534 | MS.gene21867:CDS |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 5.1:+2044906 | MS.gene21867:CDS |
| CCAATGGCCATGATGGTTGC+AGG | 0.395368 | 5.1:-2043990 | None:intergenic |
| AGGTGGGACGGTGCTTCGTT+TGG | 0.401843 | 5.1:+2044608 | MS.gene21867:CDS |
| GGAGCTGCTGCACTCATTGT+TGG | 0.411529 | 5.1:+2044762 | MS.gene21867:CDS |
| ACTCATTTGGACAGTCTTGT+TGG | 0.418448 | 5.1:+2044720 | MS.gene21867:CDS |
| TCAATGGCTCCCTCACTGTC+TGG | 0.423950 | 5.1:-2044852 | None:intergenic |
| TGGGGTGTGTTGTTTGGCTT+CGG | 0.424646 | 5.1:+2045209 | MS.gene21867:CDS |
| CCACAGGAGAAGGCCTTGAC+TGG | 0.427586 | 5.1:+2045189 | MS.gene21867:CDS |
| TCAAGAATTGCGGGTCCACC+TGG | 0.431851 | 5.1:-2045020 | None:intergenic |
| AATCAGAGATGTTTAATGGT+TGG | 0.432244 | 5.1:-2044971 | None:intergenic |
| GACAGTGAGGGAGCCATTGA+TGG | 0.433253 | 5.1:+2044855 | MS.gene21867:CDS |
| CTGAAATTCGTCAGGCTCAA+AGG | 0.435277 | 5.1:+2043958 | MS.gene21867:CDS |
| GTCCAAACCATCTCAAATAT+AGG | 0.437103 | 5.1:-2044813 | None:intergenic |
| GACTTGGCTGAGAACAATAA+AGG | 0.438047 | 5.1:+2044636 | MS.gene21867:CDS |
| AGATGAGATGCGAAAGAAAT+CGG | 0.446954 | 5.1:+2045148 | MS.gene21867:CDS |
| CTTTGTTCAACACAGTTGGC+TGG | 0.449203 | 5.1:-2044023 | None:intergenic |
| ACCTTCATTGGATGCTAGGC+AGG | 0.450943 | 5.1:+2044374 | MS.gene21867:CDS |
| ATTGTTCTCAGCCAAGTCCT+TGG | 0.461734 | 5.1:-2044631 | None:intergenic |
| CACCTGCAAAACATCCTTGT+TGG | 0.464560 | 5.1:-2044590 | None:intergenic |
| TCAACTTGATCAAGAATTGC+GGG | 0.468071 | 5.1:-2045029 | None:intergenic |
| AGTGAAGGCTATAAAAGAAT+GGG | 0.468743 | 5.1:+2044440 | MS.gene21867:CDS |
| CATGTATCTCCTCTTGATCA+TGG | 0.469562 | 5.1:-2044298 | None:intergenic |
| GCAGGACATGGTGGTGGTAG+AGG | 0.474656 | 5.1:+2044392 | MS.gene21867:CDS |
| GCGAAAGAAATCGGCACAAG+CGG | 0.478166 | 5.1:+2045157 | MS.gene21867:CDS |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 5.1:+2044907 | MS.gene21867:CDS |
| TGAAATTCGTCAGGCTCAAA+GGG | 0.491377 | 5.1:+2043959 | MS.gene21867:CDS |
| TGGTCCTAGTGATACTCATT+TGG | 0.493191 | 5.1:+2044707 | MS.gene21867:CDS |
| CAGTGAAGGCTATAAAAGAA+TGG | 0.495251 | 5.1:+2044439 | MS.gene21867:CDS |
| GATGGTCATCTCCGTGAAGC+TGG | 0.495570 | 5.1:+2044873 | MS.gene21867:CDS |
| GACGGTGCTTCGTTTGGCCA+AGG | 0.496087 | 5.1:+2044614 | MS.gene21867:CDS |
| GTCTTCGTCCATATGTGAAA+AGG | 0.504788 | 5.1:+2044556 | MS.gene21867:CDS |
| TGAGAAACCTATATTTGAGA+TGG | 0.507221 | 5.1:+2044806 | MS.gene21867:CDS |
| TGCAGTGCCAATGGCCATGA+TGG | 0.507335 | 5.1:-2043997 | None:intergenic |
| CCTGCAACCATCATGGCCAT+TGG | 0.508648 | 5.1:+2043990 | MS.gene21867:CDS |
| TGGCACCTTCATTGGATGCT+AGG | 0.509747 | 5.1:+2044370 | MS.gene21867:CDS |
| GAGTGTATCTGAAATTCGTC+AGG | 0.510346 | 5.1:+2043950 | MS.gene21867:CDS |
| ATGGAGAACAACGGTTTCAA+TGG | 0.514382 | 5.1:-2045243 | None:intergenic |
| CCAGTCAAGGCCTTCTCCTG+TGG | 0.516037 | 5.1:-2045189 | None:intergenic |
| CACAGGAGAAGGCCTTGACT+GGG | 0.517127 | 5.1:+2045190 | MS.gene21867:CDS |
| GTGAGTTGGTAATCGGCACC+AGG | 0.519680 | 5.1:-2044522 | None:intergenic |
| CATTGATAAAGCATTGGTTG+AGG | 0.521385 | 5.1:+2044944 | MS.gene21867:CDS |
| TCCAAGTGTATGTGAATACA+TGG | 0.525305 | 5.1:+2044350 | MS.gene21867:CDS |
| TGGAAAGGAGGCTGCAGTGA+AGG | 0.535095 | 5.1:+2044425 | MS.gene21867:CDS |
| GGACAAGCACTCTTTGGAGA+TGG | 0.536691 | 5.1:+2044741 | MS.gene21867:CDS |
| TTCACGGAGATGACCATCAA+TGG | 0.540133 | 5.1:-2044868 | None:intergenic |
| GCCATGTATTCACATACACT+TGG | 0.545736 | 5.1:-2044351 | None:intergenic |
| AGAAGGCCCTGCAACCATCA+TGG | 0.546762 | 5.1:+2043983 | MS.gene21867:CDS |
| ATCTTCTGGATTGCTCACCC+AGG | 0.549136 | 5.1:+2045002 | MS.gene21867:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 5.1:-2044908 | None:intergenic |
| GGACTTAAAACCACAGGAGA+AGG | 0.552447 | 5.1:+2045179 | MS.gene21867:CDS |
| GGCTGGATTTGCAGTGCCAA+TGG | 0.558766 | 5.1:-2044006 | None:intergenic |
| TCCTGCCTAGCATCCAATGA+AGG | 0.559807 | 5.1:-2044375 | None:intergenic |
| CTGTCCAAATGAGTATCACT+AGG | 0.561644 | 5.1:-2044711 | None:intergenic |
| CGAAAGAAATCGGCACAAGC+GGG | 0.566603 | 5.1:+2045158 | MS.gene21867:CDS |
| CATTTCATATAGCCACGCTA+TGG | 0.567013 | 5.1:-2045262 | None:intergenic |
| TTCAACTTGATCAAGAATTG+CGG | 0.567995 | 5.1:-2045030 | None:intergenic |
| TTCACTAAGTACTTCTCTAG+TGG | 0.572078 | 5.1:-2045087 | None:intergenic |
| TGCTAGGCAGGACATGGTGG+TGG | 0.573568 | 5.1:+2044386 | MS.gene21867:CDS |
| GTGGTAGAGGTACCTAGACT+TGG | 0.577024 | 5.1:+2044405 | MS.gene21867:CDS |
| ACGGTTTCAATGGTAAGTCC+AGG | 0.578176 | 5.1:-2045233 | None:intergenic |
| CAATGGCCATGATGGTTGCA+GGG | 0.578454 | 5.1:-2043989 | None:intergenic |
| GTGATAAATCCATGATCAAG+AGG | 0.584564 | 5.1:+2044289 | MS.gene21867:CDS |
| ATTGGATGCTAGGCAGGACA+TGG | 0.585693 | 5.1:+2044380 | MS.gene21867:CDS |
| AGAGGTACCTAGACTTGGAA+AGG | 0.590872 | 5.1:+2044410 | MS.gene21867:CDS |
| CAAGAATTGCGGGTCCACCT+GGG | 0.591037 | 5.1:-2045019 | None:intergenic |
| CGTCAGGCTCAAAGGGCAGA+AGG | 0.594346 | 5.1:+2043966 | MS.gene21867:CDS |
| GAAATGTTAGACCAGCTTCA+CGG | 0.597537 | 5.1:-2044884 | None:intergenic |
| GCAGCCTCCTTTCCAAGTCT+AGG | 0.600913 | 5.1:-2044417 | None:intergenic |
| TTCTGGATTGCTCACCCAGG+TGG | 0.608006 | 5.1:+2045005 | MS.gene21867:CDS |
| CAATAAAGGTGCTCGTGTGT+TGG | 0.608320 | 5.1:+2044650 | MS.gene21867:CDS |
| TGTGCTTTGTTCAACACAGT+TGG | 0.612931 | 5.1:-2044027 | None:intergenic |
| AACCGTTGTTCTCCATAGCG+TGG | 0.616131 | 5.1:+2045250 | MS.gene21867:CDS |
| AGGCATGTCTACACCACTTG+TGG | 0.621182 | 5.1:-2044502 | None:intergenic |
| CAAGCGGGACTTAAAACCAC+AGG | 0.631621 | 5.1:+2045173 | MS.gene21867:CDS |
| CAAACAACACACCCCAGTCA+AGG | 0.632254 | 5.1:-2045202 | None:intergenic |
| AATGAGTATCACTAGGACCA+CGG | 0.635157 | 5.1:-2044704 | None:intergenic |
| AACAATTGCTCCAGACAGTG+AGG | 0.638797 | 5.1:+2044842 | MS.gene21867:CDS |
| GTTACTGCTGTGACATTCCG+TGG | 0.652143 | 5.1:+2044687 | MS.gene21867:CDS |
| ACAAGTGGTGTAGACATGCC+TGG | 0.653893 | 5.1:+2044504 | MS.gene21867:CDS |
| ACAATTGCTCCAGACAGTGA+GGG | 0.658063 | 5.1:+2044843 | MS.gene21867:CDS |
| GGTACCTAGACTTGGAAAGG+AGG | 0.665959 | 5.1:+2044413 | MS.gene21867:CDS |
| GTGAAGGCTATAAAAGAATG+GGG | 0.673012 | 5.1:+2044441 | MS.gene21867:CDS |
| GGATGCTAGGCAGGACATGG+TGG | 0.681727 | 5.1:+2044383 | MS.gene21867:CDS |
| AGGTATATGATGTACCAACA+AGG | 0.699849 | 5.1:+2044576 | MS.gene21867:CDS |
| ACAGGAGAAGGCCTTGACTG+GGG | 0.709796 | 5.1:+2045191 | MS.gene21867:CDS |
| AGCCACGCTATGGAGAACAA+CGG | 0.751325 | 5.1:-2045252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATTGATAAAGCAT+TGG | + | chr5.1:2044938-2044957 | MS.gene21867:CDS | 20.0% |
| !! | TTATAATCAGAGATGTTTAA+TGG | - | chr5.1:2044978-2044997 | None:intergenic | 20.0% |
| !!! | ACATTAGTACAACAATTTTT+GGG | - | chr5.1:2044249-2044268 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTCAAAATCTCTT+CGG | - | chr5.1:2044331-2044350 | None:intergenic | 20.0% |
| !!! | TACATTAGTACAACAATTTT+TGG | - | chr5.1:2044250-2044269 | None:intergenic | 20.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | - | chr5.1:2044801-2044820 | None:intergenic | 25.0% |
| ! | ATACCTTGAAACAATTTGAT+AGG | - | chr5.1:2044183-2044202 | None:intergenic | 25.0% |
| ! | CTGATTATAATTCAATCTTC+TGG | + | chr5.1:2044988-2045007 | MS.gene21867:CDS | 25.0% |
| ! | GTAATTTCTTTAACTACTTC+AGG | + | chr5.1:2044267-2044286 | MS.gene21867:intron | 25.0% |
| ! | TACCTTGAAACAATTTGATA+GGG | - | chr5.1:2044182-2044201 | None:intergenic | 25.0% |
| !! | ATCATATACCTTTTCACATA+TGG | - | chr5.1:2044567-2044586 | None:intergenic | 25.0% |
| !! | TTAATATTTTGTACCACAAG+TGG | + | chr5.1:2044489-2044508 | MS.gene21867:CDS | 25.0% |
| !!! | AAGTGTGTAATCTTTGATTT+TGG | - | chr5.1:2044471-2044490 | None:intergenic | 25.0% |
| AAAACCAATCACATGATAGT+AGG | - | chr5.1:2044219-2044238 | None:intergenic | 30.0% | |
| AATCAGAGATGTTTAATGGT+TGG | - | chr5.1:2044974-2044993 | None:intergenic | 30.0% | |
| AGTGAAGGCTATAAAAGAAT+GGG | + | chr5.1:2044440-2044459 | MS.gene21867:CDS | 30.0% | |
| TGAGAAACCTATATTTGAGA+TGG | + | chr5.1:2044806-2044825 | MS.gene21867:CDS | 30.0% | |
| TTCAACTTGATCAAGAATTG+CGG | - | chr5.1:2045033-2045052 | None:intergenic | 30.0% | |
| TTCCCTATCAAATTGTTTCA+AGG | + | chr5.1:2044177-2044196 | MS.gene21867:intron | 30.0% | |
| ! | AACCTATATTTGAGATGGTT+TGG | + | chr5.1:2044811-2044830 | MS.gene21867:CDS | 30.0% |
| !! | AGAGAAGTACTTAGTGAATA+TGG | + | chr5.1:2045092-2045111 | MS.gene21867:CDS | 30.0% |
| !! | GATCAAGTTGAACAAAAGTT+AGG | + | chr5.1:2045041-2045060 | MS.gene21867:CDS | 30.0% |
| !! | GTGTAATCTTTGATTTTGGT+TGG | - | chr5.1:2044467-2044486 | None:intergenic | 30.0% |
| !! | GTTTCTCAATTTCTGGTATT+GGG | - | chr5.1:2044794-2044813 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTGAAACAATCCC+AGG | - | chr5.1:2044927-2044946 | None:intergenic | 30.0% |
| !!! | GTGATTTTGAAGTAGAAATC+AGG | - | chr5.1:2044056-2044075 | None:intergenic | 30.0% |
| !!! | TACTATCATGTGATTGGTTT+TGG | + | chr5.1:2044218-2044237 | MS.gene21867:intron | 30.0% |
| AAGACCTACTATCATGTGAT+TGG | + | chr5.1:2044212-2044231 | MS.gene21867:intron | 35.0% | |
| ACCTTCTTAAAGATGTTCCT+GGG | + | chr5.1:2044907-2044926 | MS.gene21867:CDS | 35.0% | |
| AGATGAGATGCGAAAGAAAT+CGG | + | chr5.1:2045148-2045167 | MS.gene21867:CDS | 35.0% | |
| AGGTATATGATGTACCAACA+AGG | + | chr5.1:2044576-2044595 | MS.gene21867:CDS | 35.0% | |
| CAGTGAAGGCTATAAAAGAA+TGG | + | chr5.1:2044439-2044458 | MS.gene21867:CDS | 35.0% | |
| GTCCAAACCATCTCAAATAT+AGG | - | chr5.1:2044816-2044835 | None:intergenic | 35.0% | |
| GTGAAGGCTATAAAAGAATG+GGG | + | chr5.1:2044441-2044460 | MS.gene21867:CDS | 35.0% | |
| GTGATAAATCCATGATCAAG+AGG | + | chr5.1:2044289-2044308 | MS.gene21867:CDS | 35.0% | |
| TACCAACTCACAAAACTCTT+AGG | + | chr5.1:2044534-2044553 | MS.gene21867:CDS | 35.0% | |
| TCAACTTGATCAAGAATTGC+GGG | - | chr5.1:2045032-2045051 | None:intergenic | 35.0% | |
| TCCAAGTGTATGTGAATACA+TGG | + | chr5.1:2044350-2044369 | MS.gene21867:CDS | 35.0% | |
| TTCACTAAGTACTTCTCTAG+TGG | - | chr5.1:2045090-2045109 | None:intergenic | 35.0% | |
| !! | CATTGATAAAGCATTGGTTG+AGG | + | chr5.1:2044944-2044963 | MS.gene21867:CDS | 35.0% |
| !! | GGTTTCTCAATTTCTGGTAT+TGG | - | chr5.1:2044795-2044814 | None:intergenic | 35.0% |
| !!! | GAGTTTTGTGAGTTGGTAAT+CGG | - | chr5.1:2044532-2044551 | None:intergenic | 35.0% |
| AATGAGTATCACTAGGACCA+CGG | - | chr5.1:2044707-2044726 | None:intergenic | 40.0% | |
| ATGGAGAACAACGGTTTCAA+TGG | - | chr5.1:2045246-2045265 | None:intergenic | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | + | chr5.1:2044906-2044925 | MS.gene21867:CDS | 40.0% | |
| CATGTATCTCCTCTTGATCA+TGG | - | chr5.1:2044301-2044320 | None:intergenic | 40.0% | |
| CTGTCCAAATGAGTATCACT+AGG | - | chr5.1:2044714-2044733 | None:intergenic | 40.0% | |
| GAAATGTTAGACCAGCTTCA+CGG | - | chr5.1:2044887-2044906 | None:intergenic | 40.0% | |
| GACTTGGCTGAGAACAATAA+AGG | + | chr5.1:2044636-2044655 | MS.gene21867:CDS | 40.0% | |
| GCCATGTATTCACATACACT+TGG | - | chr5.1:2044354-2044373 | None:intergenic | 40.0% | |
| GTCTTCGTCCATATGTGAAA+AGG | + | chr5.1:2044556-2044575 | MS.gene21867:CDS | 40.0% | |
| TGAAATTCGTCAGGCTCAAA+GGG | + | chr5.1:2043959-2043978 | MS.gene21867:CDS | 40.0% | |
| TGAATACATGGCACCTTCAT+TGG | + | chr5.1:2044362-2044381 | MS.gene21867:CDS | 40.0% | |
| TGGTCCTAGTGATACTCATT+TGG | + | chr5.1:2044707-2044726 | MS.gene21867:CDS | 40.0% | |
| ! | AACAAGGATGTTTTGCAGGT+GGG | + | chr5.1:2044592-2044611 | MS.gene21867:CDS | 40.0% |
| ! | ACTCATTTGGACAGTCTTGT+TGG | + | chr5.1:2044720-2044739 | MS.gene21867:CDS | 40.0% |
| ! | CTAGTGGCTTTCATCTTTTC+AGG | - | chr5.1:2045074-2045093 | None:intergenic | 40.0% |
| ! | GAGTGTATCTGAAATTCGTC+AGG | + | chr5.1:2043950-2043969 | MS.gene21867:CDS | 40.0% |
| ! | TACCAACAAGGATGTTTTGC+AGG | + | chr5.1:2044588-2044607 | MS.gene21867:CDS | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | - | chr5.1:2044911-2044930 | None:intergenic | 40.0% |
| ! | TGTGCTTTGTTCAACACAGT+TGG | - | chr5.1:2044030-2044049 | None:intergenic | 40.0% |
| !! | GACCTAAGAGTTTTGTGAGT+TGG | - | chr5.1:2044539-2044558 | None:intergenic | 40.0% |
| AACAATTGCTCCAGACAGTG+AGG | + | chr5.1:2044842-2044861 | MS.gene21867:CDS | 45.0% | |
| ACAATTGCTCCAGACAGTGA+GGG | + | chr5.1:2044843-2044862 | MS.gene21867:CDS | 45.0% | |
| ACGGTTTCAATGGTAAGTCC+AGG | - | chr5.1:2045236-2045255 | None:intergenic | 45.0% | |
| ATTGTTCTCAGCCAAGTCCT+TGG | - | chr5.1:2044634-2044653 | None:intergenic | 45.0% | |
| CACCTGCAAAACATCCTTGT+TGG | - | chr5.1:2044593-2044612 | None:intergenic | 45.0% | |
| CTGAAATTCGTCAGGCTCAA+AGG | + | chr5.1:2043958-2043977 | MS.gene21867:CDS | 45.0% | |
| CTTGTTGGACAAGCACTCTT+TGG | + | chr5.1:2044735-2044754 | MS.gene21867:CDS | 45.0% | |
| CTTTGTTCAACACAGTTGGC+TGG | - | chr5.1:2044026-2044045 | None:intergenic | 45.0% | |
| GGACTTAAAACCACAGGAGA+AGG | + | chr5.1:2045179-2045198 | MS.gene21867:CDS | 45.0% | |
| TTCACGGAGATGACCATCAA+TGG | - | chr5.1:2044871-2044890 | None:intergenic | 45.0% | |
| ! | CAACAAGGATGTTTTGCAGG+TGG | + | chr5.1:2044591-2044610 | MS.gene21867:CDS | 45.0% |
| !! | AGAGGTACCTAGACTTGGAA+AGG | + | chr5.1:2044410-2044429 | MS.gene21867:CDS | 45.0% |
| !! | CAATAAAGGTGCTCGTGTGT+TGG | + | chr5.1:2044650-2044669 | MS.gene21867:CDS | 45.0% |
| AACCGTTGTTCTCCATAGCG+TGG | + | chr5.1:2045250-2045269 | MS.gene21867:CDS | 50.0% | |
| ACAAGTGGTGTAGACATGCC+TGG | + | chr5.1:2044504-2044523 | MS.gene21867:CDS | 50.0% | |
| ACCTTCATTGGATGCTAGGC+AGG | + | chr5.1:2044374-2044393 | MS.gene21867:CDS | 50.0% | |
| AGCCACGCTATGGAGAACAA+CGG | - | chr5.1:2045255-2045274 | None:intergenic | 50.0% | |
| AGGCATGTCTACACCACTTG+TGG | - | chr5.1:2044505-2044524 | None:intergenic | 50.0% | |
| ATCTTCTGGATTGCTCACCC+AGG | + | chr5.1:2045002-2045021 | MS.gene21867:CDS | 50.0% | |
| ATTGGATGCTAGGCAGGACA+TGG | + | chr5.1:2044380-2044399 | MS.gene21867:CDS | 50.0% | |
| CAAACAACACACCCCAGTCA+AGG | - | chr5.1:2045205-2045224 | None:intergenic | 50.0% | |
| CAAGCGGGACTTAAAACCAC+AGG | + | chr5.1:2045173-2045192 | MS.gene21867:CDS | 50.0% | |
| CAATGGCCATGATGGTTGCA+GGG | - | chr5.1:2043992-2044011 | None:intergenic | 50.0% | |
| CGAAAGAAATCGGCACAAGC+GGG | + | chr5.1:2045158-2045177 | MS.gene21867:CDS | 50.0% | |
| GCGAAAGAAATCGGCACAAG+CGG | + | chr5.1:2045157-2045176 | MS.gene21867:CDS | 50.0% | |
| GGTACCTAGACTTGGAAAGG+AGG | + | chr5.1:2044413-2044432 | MS.gene21867:CDS | 50.0% | |
| GTTACTGCTGTGACATTCCG+TGG | + | chr5.1:2044687-2044706 | MS.gene21867:CDS | 50.0% | |
| TCCTGCCTAGCATCCAATGA+AGG | - | chr5.1:2044378-2044397 | None:intergenic | 50.0% | |
| TGGCACCTTCATTGGATGCT+AGG | + | chr5.1:2044370-2044389 | MS.gene21867:CDS | 50.0% | |
| ! | AGGATGTTTTGCAGGTGGGA+CGG | + | chr5.1:2044596-2044615 | MS.gene21867:CDS | 50.0% |
| ! | CTTGACTGGGGTGTGTTGTT+TGG | + | chr5.1:2045203-2045222 | MS.gene21867:CDS | 50.0% |
| ! | GGACAAGCACTCTTTGGAGA+TGG | + | chr5.1:2044741-2044760 | MS.gene21867:CDS | 50.0% |
| !! | GTGGTAGAGGTACCTAGACT+TGG | + | chr5.1:2044405-2044424 | MS.gene21867:CDS | 50.0% |
| !! | TGGGGTGTGTTGTTTGGCTT+CGG | + | chr5.1:2045209-2045228 | MS.gene21867:CDS | 50.0% |
| ACAGGAGAAGGCCTTGACTG+GGG | + | chr5.1:2045191-2045210 | MS.gene21867:CDS | 55.0% | |
| AGAAGGCCCTGCAACCATCA+TGG | + | chr5.1:2043983-2044002 | MS.gene21867:CDS | 55.0% | |
| CAAGAATTGCGGGTCCACCT+GGG | - | chr5.1:2045022-2045041 | None:intergenic | 55.0% | |
| CACAGGAGAAGGCCTTGACT+GGG | + | chr5.1:2045190-2045209 | MS.gene21867:CDS | 55.0% | |
| CCAATGGCCATGATGGTTGC+AGG | - | chr5.1:2043993-2044012 | None:intergenic | 55.0% | |
| CCTGCAACCATCATGGCCAT+TGG | + | chr5.1:2043990-2044009 | MS.gene21867:CDS | 55.0% | |
| GACAGTGAGGGAGCCATTGA+TGG | + | chr5.1:2044855-2044874 | MS.gene21867:CDS | 55.0% | |
| GATGGTCATCTCCGTGAAGC+TGG | + | chr5.1:2044873-2044892 | MS.gene21867:CDS | 55.0% | |
| GCAGCCTCCTTTCCAAGTCT+AGG | - | chr5.1:2044420-2044439 | None:intergenic | 55.0% | |
| GCTTCGTTTGGCCAAGGACT+TGG | + | chr5.1:2044620-2044639 | MS.gene21867:CDS | 55.0% | |
| GGAGCTGCTGCACTCATTGT+TGG | + | chr5.1:2044762-2044781 | MS.gene21867:CDS | 55.0% | |
| GGCTGGATTTGCAGTGCCAA+TGG | - | chr5.1:2044009-2044028 | None:intergenic | 55.0% | |
| TCAAGAATTGCGGGTCCACC+TGG | - | chr5.1:2045023-2045042 | None:intergenic | 55.0% | |
| TCAATGGCTCCCTCACTGTC+TGG | - | chr5.1:2044855-2044874 | None:intergenic | 55.0% | |
| TGCAGTGCCAATGGCCATGA+TGG | - | chr5.1:2044000-2044019 | None:intergenic | 55.0% | |
| TGGAAAGGAGGCTGCAGTGA+AGG | + | chr5.1:2044425-2044444 | MS.gene21867:CDS | 55.0% | |
| TTCTGGATTGCTCACCCAGG+TGG | + | chr5.1:2045005-2045024 | MS.gene21867:CDS | 55.0% | |
| !! | GTGAGTTGGTAATCGGCACC+AGG | - | chr5.1:2044525-2044544 | None:intergenic | 55.0% |
| !! | GTGTTGTTTGGCTTCGGACC+TGG | + | chr5.1:2045215-2045234 | MS.gene21867:CDS | 55.0% |
| AGGTGGGACGGTGCTTCGTT+TGG | + | chr5.1:2044608-2044627 | MS.gene21867:CDS | 60.0% | |
| CCACAGGAGAAGGCCTTGAC+TGG | + | chr5.1:2045189-2045208 | MS.gene21867:CDS | 60.0% | |
| CCAGTCAAGGCCTTCTCCTG+TGG | - | chr5.1:2045192-2045211 | None:intergenic | 60.0% | |
| CGTCAGGCTCAAAGGGCAGA+AGG | + | chr5.1:2043966-2043985 | MS.gene21867:CDS | 60.0% | |
| GACGGTGCTTCGTTTGGCCA+AGG | + | chr5.1:2044614-2044633 | MS.gene21867:CDS | 60.0% | |
| GGATGCTAGGCAGGACATGG+TGG | + | chr5.1:2044383-2044402 | MS.gene21867:CDS | 60.0% | |
| TGCTAGGCAGGACATGGTGG+TGG | + | chr5.1:2044386-2044405 | MS.gene21867:CDS | 60.0% | |
| !! | GCAGGACATGGTGGTGGTAG+AGG | + | chr5.1:2044392-2044411 | MS.gene21867:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2043945 | 2045280 | 2043945 | ID=MS.gene21867 |
| chr5.1 | mRNA | 2043945 | 2045280 | 2043945 | ID=MS.gene21867.t1;Parent=MS.gene21867 |
| chr5.1 | exon | 2043945 | 2044122 | 2043945 | ID=MS.gene21867.t1.exon1;Parent=MS.gene21867.t1 |
| chr5.1 | CDS | 2043945 | 2044122 | 2043945 | ID=cds.MS.gene21867.t1;Parent=MS.gene21867.t1 |
| chr5.1 | exon | 2044289 | 2045280 | 2044289 | ID=MS.gene21867.t1.exon2;Parent=MS.gene21867.t1 |
| chr5.1 | CDS | 2044289 | 2045280 | 2044289 | ID=cds.MS.gene21867.t1;Parent=MS.gene21867.t1 |
| Gene Sequence |
| Protein sequence |
