Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22499.t1 | XP_003610986.1 | 96.7 | 360 | 8 | 1 | 1 | 356 | 29 | 388 | 2.30E-206 | 728 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22499.t1 | Q8BU04 | 37.8 | 376 | 193 | 12 | 1 | 356 | 33 | 387 | 7.3e-60 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22499.t1 | G7K9B9 | 96.7 | 360 | 8 | 1 | 1 | 356 | 29 | 388 | 1.7e-206 | 728.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene22499 | 0.809677 | 1.68E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene22499 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene22499 | 0.838439 | 2.87E-57 | -1.69E-46 |
| MS.gene049382 | MS.gene22499 | 0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene049703 | MS.gene22499 | -0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene22499 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene22499 | 0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene22499 | 0.8267 | 2.35E-54 | -1.69E-46 |
| MS.gene050384 | MS.gene22499 | 0.832875 | 7.36E-56 | -1.69E-46 |
| MS.gene050386 | MS.gene22499 | 0.84014 | 1.04E-57 | -1.69E-46 |
| MS.gene050437 | MS.gene22499 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene22499 | 0.833619 | 4.81E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene22499 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene22499 | 0.824089 | 9.75E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene22499 | 0.818066 | 2.38E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene22499 | 0.801375 | 9.27E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene22499 | 0.802751 | 4.83E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene22499 | 0.824168 | 9.34E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene22499 | 0.849736 | 2.67E-60 | -1.69E-46 |
| MS.gene051328 | MS.gene22499 | 0.832283 | 1.03E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene22499 | 0.833946 | 3.98E-56 | -1.69E-46 |
| MS.gene051746 | MS.gene22499 | 0.808095 | 3.66E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene22499 | 0.814867 | 1.24E-51 | -1.69E-46 |
| MS.gene051856 | MS.gene22499 | 0.807436 | 5.06E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene22499 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene22499 | 0.810584 | 1.07E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene22499 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene22499 | 0.812214 | 4.75E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene22499 | 0.811868 | 5.64E-51 | -1.69E-46 |
| MS.gene053590 | MS.gene22499 | 0.825315 | 5.01E-54 | -1.69E-46 |
| MS.gene05462 | MS.gene22499 | 0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene054823 | MS.gene22499 | 0.819313 | 1.24E-52 | -1.69E-46 |
| MS.gene055424 | MS.gene22499 | 0.813287 | 2.76E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene22499 | 0.80895 | 2.41E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene22499 | 0.832365 | 9.85E-56 | -1.69E-46 |
| MS.gene056432 | MS.gene22499 | 0.807051 | 6.11E-50 | -1.69E-46 |
| MS.gene056580 | MS.gene22499 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene22499 | 0.802791 | 4.74E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene22499 | 0.850152 | 2.04E-60 | -1.69E-46 |
| MS.gene057140 | MS.gene22499 | 0.831402 | 1.70E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene22499 | 0.852966 | 3.26E-61 | -1.69E-46 |
| MS.gene057287 | MS.gene22499 | 0.806946 | 6.43E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene22499 | 0.838193 | 3.33E-57 | -1.69E-46 |
| MS.gene058055 | MS.gene22499 | 0.852587 | 4.19E-61 | -1.69E-46 |
| MS.gene058238 | MS.gene22499 | 0.806064 | 9.86E-50 | -1.69E-46 |
| MS.gene058646 | MS.gene22499 | 0.837222 | 5.90E-57 | -1.69E-46 |
| MS.gene058654 | MS.gene22499 | 0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene22499 | 0.821485 | 3.94E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene22499 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene22499 | 0.82131 | 4.32E-53 | -1.69E-46 |
| MS.gene060296 | MS.gene22499 | 0.81569 | 8.12E-52 | -1.69E-46 |
| MS.gene060463 | MS.gene22499 | 0.818284 | 2.12E-52 | -1.69E-46 |
| MS.gene060465 | MS.gene22499 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene22499 | 0.804512 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22499.t1 | MTR_5g009240 | 96.667 | 360 | 8 | 1 | 1 | 356 | 29 | 388 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22499.t1 | AT4G23860 | 52.405 | 395 | 147 | 7 | 2 | 356 | 30 | 423 | 3.71e-140 | 407 |
| MS.gene22499.t1 | AT4G23860 | 52.405 | 395 | 147 | 7 | 2 | 356 | 30 | 423 | 3.71e-140 | 407 |
| MS.gene22499.t1 | AT4G23860 | 52.405 | 395 | 147 | 7 | 2 | 356 | 30 | 423 | 3.71e-140 | 407 |
| MS.gene22499.t1 | AT4G23860 | 50.798 | 376 | 144 | 7 | 21 | 356 | 1 | 375 | 7.68e-128 | 374 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATATATGATTTAAC+TGG | + | 38105:17683-17702 | MS.gene22499:intergenic | 10.0% |
| !! | ATAAAATATATGATTTAACT+GGG | + | 38105:17682-17701 | MS.gene22499:intergenic | 10.0% |
| !! | TAGTTTAACTAATTAATTAT+TGG | - | 38105:18916-18935 | MS.gene22499:CDS | 10.0% |
| !!! | AATATTAGAAGATTTTTTTT+AGG | - | 38105:20689-20708 | MS.gene22499:intron | 10.0% |
| !!! | ATATTAGAAGATTTTTTTTA+GGG | - | 38105:20690-20709 | MS.gene22499:intron | 10.0% |
| !!! | ATTTTTATTAATTTTGCTTT+TGG | - | 38105:20589-20608 | MS.gene22499:intron | 10.0% |
| !! | AAATCATTAACTCTAATTAT+GGG | + | 38105:20958-20977 | MS.gene22499:intergenic | 15.0% |
| !! | AATTAATTATTGGTACAAAA+CGG | - | 38105:18926-18945 | MS.gene22499:CDS | 15.0% |
| !! | ATCAAATTTATAAAATGTCT+AGG | - | 38105:20417-20436 | MS.gene22499:CDS | 15.0% |
| !! | GTTTATCTATAATTTGAAAA+CGG | + | 38105:20502-20521 | MS.gene22499:intergenic | 15.0% |
| !! | TAAATCATTAACTCTAATTA+TGG | + | 38105:20959-20978 | MS.gene22499:intergenic | 15.0% |
| !! | TTACTGATGAAAATAATTAT+TGG | - | 38105:20881-20900 | MS.gene22499:intron | 15.0% |
| !!! | AATCATATATTTTATTTGTG+AGG | - | 38105:17687-17706 | MS.gene22499:intron | 15.0% |
| !!! | AATGCAATGTTTTTTATTTT+CGG | + | 38105:18439-18458 | MS.gene22499:intergenic | 15.0% |
| !!! | ATAAACGTTGATTATAAATA+AGG | - | 38105:20516-20535 | MS.gene22499:CDS | 15.0% |
| !!! | ATAATCAGGTAATAATATTT+TGG | + | 38105:17983-18002 | MS.gene22499:intergenic | 15.0% |
| !!! | TAGAGTTAATGATTTAAAAT+TGG | - | 38105:20963-20982 | MS.gene22499:intron | 15.0% |
| !!! | TAGTTTTAAAACAAAAGTTT+GGG | + | 38105:18898-18917 | MS.gene22499:intergenic | 15.0% |
| !!! | TTAAGTCTTTTTAATAAACT+TGG | - | 38105:19803-19822 | MS.gene22499:intron | 15.0% |
| !! | AAATGACAATTGAAGATTAT+GGG | + | 38105:18977-18996 | MS.gene22499:intergenic | 20.0% |
| !! | GAACTAAAAAATTGTATATG+AGG | + | 38105:18751-18770 | MS.gene22499:intergenic | 20.0% |
| !! | TAAAAAAGTTCATACAAGTT+GGG | + | 38105:20286-20305 | MS.gene22499:intergenic | 20.0% |
| !! | TAAAATAGATTAGAGAAGAT+TGG | + | 38105:18371-18390 | MS.gene22499:intergenic | 20.0% |
| !! | TAAAGAGATCATAATAATCT+TGG | + | 38105:20770-20789 | MS.gene22499:intergenic | 20.0% |
| !! | TAGCAATATATTGATATCTA+AGG | + | 38105:18052-18071 | MS.gene22499:intergenic | 20.0% |
| !!! | CTAGTTTTAAAACAAAAGTT+TGG | + | 38105:18899-18918 | MS.gene22499:intergenic | 20.0% |
| !!! | GGTTATTTCTTTATAAAAAG+TGG | - | 38105:17750-17769 | MS.gene22499:intron | 20.0% |
| !!! | TAACTTGTTGAATTATTTGA+TGG | - | 38105:20823-20842 | MS.gene22499:intron | 20.0% |
| ! | AAATCACAATGGCAAAAATA+AGG | + | 38105:19189-19208 | MS.gene22499:intergenic | 25.0% |
| ! | AATGACAATTGAAGATTATG+GGG | + | 38105:18976-18995 | MS.gene22499:intergenic | 25.0% |
| ! | ACAGTATATTAAACACAATC+TGG | + | 38105:18474-18493 | MS.gene22499:intergenic | 25.0% |
| ! | ACATTCTCAATATCTTTACT+TGG | + | 38105:18166-18185 | MS.gene22499:intergenic | 25.0% |
| ! | AGAATGATAGAAAATCACAA+TGG | + | 38105:19200-19219 | MS.gene22499:intergenic | 25.0% |
| ! | ATAACATGTCGAATAAAATC+AGG | + | 38105:17914-17933 | MS.gene22499:intergenic | 25.0% |
| ! | ATATACTCAATTTGCATTTC+TGG | - | 38105:19113-19132 | MS.gene22499:CDS | 25.0% |
| ! | ATCTATTACAGATACATGAT+TGG | + | 38105:19066-19085 | MS.gene22499:intergenic | 25.0% |
| ! | ATTATATCCTGAGGTAATAT+TGG | - | 38105:19313-19332 | MS.gene22499:CDS | 25.0% |
| ! | CAAATTAGAGTCATTAAACA+CGG | + | 38105:20037-20056 | MS.gene22499:intergenic | 25.0% |
| ! | CATTCTCAATATCTTTACTT+GGG | + | 38105:18165-18184 | MS.gene22499:intergenic | 25.0% |
| ! | CTAAAAAATTGTATATGAGG+AGG | + | 38105:18748-18767 | MS.gene22499:intergenic | 25.0% |
| ! | GAAATGACAATTGAAGATTA+TGG | + | 38105:18978-18997 | MS.gene22499:intergenic | 25.0% |
| ! | GTAAAAAAGTTCATACAAGT+TGG | + | 38105:20287-20306 | MS.gene22499:intergenic | 25.0% |
| ! | TAACATGTCGAATAAAATCA+GGG | + | 38105:17913-17932 | MS.gene22499:intergenic | 25.0% |
| ! | TAATGTCATCAAAAAACTGA+TGG | + | 38105:20132-20151 | MS.gene22499:intergenic | 25.0% |
| ! | TAATTCTCCTAAAATTGATG+TGG | - | 38105:19445-19464 | MS.gene22499:intron | 25.0% |
| ! | TTAACTCTAATTATGGGAAA+TGG | + | 38105:20952-20971 | MS.gene22499:intergenic | 25.0% |
| ! | TTCTGAATCTATATCTAATG+GGG | - | 38105:19484-19503 | MS.gene22499:intron | 25.0% |
| ! | TTGAGTTTATTTGTCATATC+TGG | - | 38105:20230-20249 | MS.gene22499:intron | 25.0% |
| !! | AAACAAACAACCATCATTTT+TGG | + | 38105:19020-19039 | MS.gene22499:intergenic | 25.0% |
| !! | AAGATTACTTCTAAGAAGTT+GGG | - | 38105:20619-20638 | MS.gene22499:intron | 25.0% |
| !! | GTTCTGAATCTATATCTAAT+GGG | - | 38105:19483-19502 | MS.gene22499:intron | 25.0% |
| !! | TAAGATTACTTCTAAGAAGT+TGG | - | 38105:20618-20637 | MS.gene22499:intron | 25.0% |
| !! | TTGATGACATTAAGAATAAG+CGG | - | 38105:20140-20159 | MS.gene22499:intron | 25.0% |
| !!! | CTTGTATGAACTTTTTTACA+TGG | - | 38105:20288-20307 | MS.gene22499:intron | 25.0% |
| !!! | GTCACTTTTTAACTATTAAC+TGG | - | 38105:17787-17806 | MS.gene22499:intron | 25.0% |
| AAAGAGTTCTCCAAAAATGA+TGG | - | 38105:19007-19026 | MS.gene22499:CDS | 30.0% | |
| AACTTTCGATAGTGTATCTT+GGG | - | 38105:17818-17837 | MS.gene22499:intron | 30.0% | |
| AATACAAAATCCCCCTAATT+TGG | + | 38105:18776-18795 | MS.gene22499:intergenic | 30.0% | |
| AATCTACAACGGAATACTAT+AGG | + | 38105:17850-17869 | MS.gene22499:intergenic | 30.0% | |
| AATTGAGTAGAAAGAGTTCA+AGG | + | 38105:21117-21136 | MS.gene22499:intergenic | 30.0% | |
| AGTGATAAATATGTAACAGC+TGG | + | 38105:19166-19185 | MS.gene22499:intergenic | 30.0% | |
| ATAAGCCATCAAAATCAAAC+TGG | + | 38105:18010-18029 | MS.gene22499:intergenic | 30.0% | |
| ATACAAAATCCCCCTAATTT+GGG | + | 38105:18775-18794 | MS.gene22499:intergenic | 30.0% | |
| ATAGATGGATACATTCTTCA+TGG | - | 38105:20011-20030 | MS.gene22499:intron | 30.0% | |
| ATCAAACTGGGTTTATAATC+AGG | + | 38105:17997-18016 | MS.gene22499:intergenic | 30.0% | |
| ATGCAAATGCAAGAATTGTT+TGG | - | 38105:19661-19680 | MS.gene22499:intron | 30.0% | |
| ATTCGACATGTTATTGTGAT+GGG | - | 38105:17920-17939 | MS.gene22499:intron | 30.0% | |
| ATTGCTTTACCATGTATAAC+TGG | + | 38105:19611-19630 | MS.gene22499:intergenic | 30.0% | |
| ATTGTTATCAAGCTTTGCTA+GGG | + | 38105:19095-19114 | MS.gene22499:intergenic | 30.0% | |
| CAATATTGAGAAGTCATCAA+GGG | + | 38105:20361-20380 | MS.gene22499:intergenic | 30.0% | |
| CAATGTTCCTTTCCAAAAAT+TGG | - | 38105:19627-19646 | MS.gene22499:intron | 30.0% | |
| CATGTCATATATTAAGTGCA+AGG | + | 38105:17875-17894 | MS.gene22499:intergenic | 30.0% | |
| GACAATTTAACCATATCTAG+AGG | + | 38105:21010-21029 | MS.gene22499:intergenic | 30.0% | |
| GGACGATTCAAAAAATTAAC+TGG | - | 38105:20438-20457 | MS.gene22499:CDS | 30.0% | |
| GTGAATGTTGAACTAAATCT+TGG | - | 38105:20858-20877 | MS.gene22499:intron | 30.0% | |
| TAACTTTCGATAGTGTATCT+TGG | - | 38105:17817-17836 | MS.gene22499:intron | 30.0% | |
| TAAGCCATCAAAATCAAACT+GGG | + | 38105:18009-18028 | MS.gene22499:intergenic | 30.0% | |
| TATATGTTATGTTTCACGAC+AGG | - | 38105:20066-20085 | MS.gene22499:intron | 30.0% | |
| TATTCGACATGTTATTGTGA+TGG | - | 38105:17919-17938 | MS.gene22499:intron | 30.0% | |
| TATTGTTATCAAGCTTTGCT+AGG | + | 38105:19096-19115 | MS.gene22499:intergenic | 30.0% | |
| TCGTACAATCACAACTTTAA+AGG | - | 38105:18193-18212 | MS.gene22499:intron | 30.0% | |
| TGGAAAGAAAATAGAGCTTT+GGG | + | 38105:18833-18852 | MS.gene22499:intergenic | 30.0% | |
| TGGAATATTATCATCAGAAG+CGG | - | 38105:19681-19700 | MS.gene22499:intron | 30.0% | |
| TTGCTTTACCATGTATAACT+GGG | + | 38105:19610-19629 | MS.gene22499:intergenic | 30.0% | |
| ! | AATGGATTTGAGTAACTTTG+AGG | + | 38105:20934-20953 | MS.gene22499:intergenic | 30.0% |
| ! | AGATTACTTCTAAGAAGTTG+GGG | - | 38105:20620-20639 | MS.gene22499:intron | 30.0% |
| ! | ATAACAAAGGGTACATGAAA+AGG | - | 38105:17473-17492 | MS.gene22499:CDS | 30.0% |
| ! | TTCGTCTCTTTAAGTTAACT+TGG | - | 38105:20323-20342 | MS.gene22499:intron | 30.0% |
| ! | TTTCATGTACCCTTTGTTAT+AGG | + | 38105:17473-17492 | MS.gene22499:intergenic | 30.0% |
| !! | AATTTGCATTTCTGGTATGA+TGG | - | 38105:19121-19140 | MS.gene22499:CDS | 30.0% |
| !! | CTTTCTGAAATTATATCCTG+AGG | - | 38105:19304-19323 | MS.gene22499:CDS | 30.0% |
| !! | GGTTCTGAATCTATATCTAA+TGG | - | 38105:19482-19501 | MS.gene22499:intron | 30.0% |
| !! | TAAACCCAGTTTGATTTTGA+TGG | - | 38105:18002-18021 | MS.gene22499:intron | 30.0% |
| !!! | TTTTTAGTTCCCCCAAATTA+GGG | - | 38105:18761-18780 | MS.gene22499:intron | 30.0% |
| !!! | TTTTTTAGTTCCCCCAAATT+AGG | - | 38105:18760-18779 | MS.gene22499:intron | 30.0% |
| AAAAGCAAACACTGATACAC+CGG | + | 38105:17630-17649 | MS.gene22498:intergenic | 35.0% | |
| AACTCAACAGTTTGCAAGTT+AGG | + | 38105:20217-20236 | MS.gene22499:intergenic | 35.0% | |
| AATAGCAGTATATGCACTGA+AGG | - | 38105:19533-19552 | MS.gene22499:intron | 35.0% | |
| AGAACTTCGGATTGAATTAC+CGG | - | 38105:17608-17627 | MS.gene22499:intron | 35.0% | |
| AGAAGAAAAGTTACAGCAAC+AGG | - | 38105:19769-19788 | MS.gene22499:intron | 35.0% | |
| ATATCCTGAGGTAATATTGG+TGG | - | 38105:19316-19335 | MS.gene22499:CDS | 35.0% | |
| ATCAATGAGACCTCTAGATA+TGG | - | 38105:20997-21016 | MS.gene22499:intron | 35.0% | |
| ATCTCTGATAAGGCTATGTT+TGG | - | 38105:18520-18539 | MS.gene22499:intron | 35.0% | |
| ATTGTATATGAGGAGGAGTT+TGG | + | 38105:18741-18760 | MS.gene22499:intergenic | 35.0% | |
| CAATCCACAAATCTCTGATA+AGG | - | 38105:18510-18529 | MS.gene22499:intron | 35.0% | |
| GAGACAATTAACATGCAAAC+TGG | + | 38105:19561-19580 | MS.gene22499:intergenic | 35.0% | |
| GCAATATTGAGAAGTCATCA+AGG | + | 38105:20362-20381 | MS.gene22499:intergenic | 35.0% | |
| GTGGAAAGAAAATAGAGCTT+TGG | + | 38105:18834-18853 | MS.gene22499:intergenic | 35.0% | |
| TACAAAATCCCCCTAATTTG+GGG | + | 38105:18774-18793 | MS.gene22499:intergenic | 35.0% | |
| TCTATTTGTTCTTCAGCATC+TGG | + | 38105:18253-18272 | MS.gene22499:intergenic | 35.0% | |
| TCTCTGATAAGGCTATGTTT+GGG | - | 38105:18521-18540 | MS.gene22499:intron | 35.0% | |
| TGCAAAAAAGAGAACATACC+AGG | + | 38105:19892-19911 | MS.gene22499:intergenic | 35.0% | |
| TGCTTTACCATGTATAACTG+GGG | + | 38105:19609-19628 | MS.gene22499:intergenic | 35.0% | |
| TTACGAGGATTTCATGTGTA+AGG | - | 38105:19262-19281 | MS.gene22499:CDS | 35.0% | |
| TTGCATGTTAATTGTCTCCT+TGG | - | 38105:19563-19582 | MS.gene22499:intron | 35.0% | |
| ! | ACAAAAGTTTGGGAGTTTTG+AGG | + | 38105:18888-18907 | MS.gene22499:intergenic | 35.0% |
| ! | TTATATGAAGTATCACCCAG+TGG | + | 38105:19428-19447 | MS.gene22499:intergenic | 35.0% |
| ! | TTTGGAGAACTCTTTTCGAA+GGG | + | 38105:19002-19021 | MS.gene22499:intergenic | 35.0% |
| !! | AAAGAAAATAGAGCTTTGGG+AGG | + | 38105:18830-18849 | MS.gene22499:intergenic | 35.0% |
| !! | AAGAAAATAGAGCTTTGGGA+GGG | + | 38105:18829-18848 | MS.gene22499:intergenic | 35.0% |
| !! | ACGGTTTTGACCTTTTATTG+TGG | - | 38105:18945-18964 | MS.gene22499:CDS | 35.0% |
| !! | ATAGCCTTATCAGAGATTTG+TGG | + | 38105:18517-18536 | MS.gene22499:intergenic | 35.0% |
| !! | CAAAAGTTTGGGAGTTTTGA+GGG | + | 38105:18887-18906 | MS.gene22499:intergenic | 35.0% |
| !! | CATCTCTCCAATTTTTGGAA+AGG | + | 38105:19637-19656 | MS.gene22499:intergenic | 35.0% |
| !! | GATTGCTTTTCTACTTGACA+AGG | - | 38105:19703-19722 | MS.gene22499:intron | 35.0% |
| !! | GGCTGTTCTGAAAAGAATTT+AGG | - | 38105:17729-17748 | MS.gene22499:intron | 35.0% |
| !! | GTCATTTTAAACAAAGCTGG+TGG | + | 38105:21068-21087 | MS.gene22499:intergenic | 35.0% |
| !! | TAGAGCATCTCTCCAATTTT+TGG | + | 38105:19642-19661 | MS.gene22499:intergenic | 35.0% |
| !! | TGCGTCATTTTAAACAAAGC+TGG | + | 38105:21071-21090 | MS.gene22499:intergenic | 35.0% |
| !! | TTCCTTTGACTCTAGAACTT+CGG | - | 38105:17595-17614 | MS.gene22499:intron | 35.0% |
| !! | TTTTGGAGAACTCTTTTCGA+AGG | + | 38105:19003-19022 | MS.gene22499:intergenic | 35.0% |
| !!! | AAAAGTTTGGGAGTTTTGAG+GGG | + | 38105:18886-18905 | MS.gene22499:intergenic | 35.0% |
| !!! | TAGCAAGGACAAAGGTATTT+TGG | - | 38105:19370-19389 | MS.gene22499:CDS | 35.0% |
| !!! | TTTTAGTTCCCCCAAATTAG+GGG | - | 38105:18762-18781 | MS.gene22499:intron | 35.0% |
| AATTGCGCTTGCTTCAAATG+AGG | - | 38105:21164-21183 | MS.gene22499:CDS | 40.0% | |
| ACAAAATCCCCCTAATTTGG+GGG | + | 38105:18773-18792 | MS.gene22499:intergenic | 40.0% | |
| AGAAAAGTTACAGCAACAGG+AGG | - | 38105:19772-19791 | MS.gene22499:intron | 40.0% | |
| AGAAACTTCAGATGTGACTG+TGG | - | 38105:18103-18122 | MS.gene22499:intron | 40.0% | |
| AGAGAAAGTCGAGATCTTGA+AGG | - | 38105:19832-19851 | MS.gene22499:intron | 40.0% | |
| AGGGCTTGTAAAAAAGGAAG+TGG | + | 38105:18853-18872 | MS.gene22499:intergenic | 40.0% | |
| AGTGCAAGGCAAATCTACAA+CGG | + | 38105:17861-17880 | MS.gene22499:intergenic | 40.0% | |
| CAAATGAGGATCATGTGGAA+TGG | - | 38105:21178-21197 | MS.gene22499:CDS | 40.0% | |
| CACATGAAATCCTCGTAAAG+TGG | + | 38105:19260-19279 | MS.gene22499:intergenic | 40.0% | |
| GAAAAGTTACAGCAACAGGA+GGG | - | 38105:19773-19792 | MS.gene22499:intron | 40.0% | |
| GAAACTTCAGATGTGACTGT+GGG | - | 38105:18104-18123 | MS.gene22499:intron | 40.0% | |
| GAATCTATATCTAATGGGGC+AGG | - | 38105:19488-19507 | MS.gene22499:intron | 40.0% | |
| GACTGTGGGAATTCAAAGTT+TGG | - | 38105:18118-18137 | MS.gene22499:intron | 40.0% | |
| GAGAAAGTCGAGATCTTGAA+GGG | - | 38105:19833-19852 | MS.gene22499:intron | 40.0% | |
| GCATTGAAGATATGAAGGAC+GGG | - | 38105:19855-19874 | MS.gene22499:intron | 40.0% | |
| GTTTCGTTTCTACAAGCCTA+CGG | - | 38105:21223-21242 | MS.gene22499:CDS | 40.0% | |
| TAAGGCTATGTTTGGGAGTT+TGG | - | 38105:18528-18547 | MS.gene22499:intron | 40.0% | |
| TATATGAGGAGGAGTTTGGA+GGG | + | 38105:18737-18756 | MS.gene22499:intergenic | 40.0% | |
| TATGACATGTAATCTGTGCC+TGG | - | 38105:17886-17905 | MS.gene22499:intron | 40.0% | |
| TGAGTAGAAAGAGTTCAAGG+AGG | + | 38105:21114-21133 | MS.gene22499:intergenic | 40.0% | |
| TGCTTCAAATGAGGATCATG+TGG | - | 38105:21173-21192 | MS.gene22499:CDS | 40.0% | |
| TGGATATCAGCAGCAGAAAT+TGG | + | 38105:20112-20131 | MS.gene22499:intergenic | 40.0% | |
| ! | AGGGAGTGTACCTATAACAA+AGG | - | 38105:17460-17479 | MS.gene22499:CDS | 40.0% |
| ! | GCTTGTGCCACATCAATTTT+AGG | + | 38105:19455-19474 | MS.gene22499:intergenic | 40.0% |
| ! | GGCATTGAAGATATGAAGGA+CGG | - | 38105:19854-19873 | MS.gene22499:intron | 40.0% |
| ! | GGGAGTGTACCTATAACAAA+GGG | - | 38105:17461-17480 | MS.gene22499:CDS | 40.0% |
| ! | TGCTTTTCTACTTGACAAGG+AGG | - | 38105:19706-19725 | MS.gene22499:intron | 40.0% |
| ! | TTTAGTTCCCCCAAATTAGG+GGG | - | 38105:18763-18782 | MS.gene22499:intron | 40.0% |
| !! | AGAAAATAGAGCTTTGGGAG+GGG | + | 38105:18828-18847 | MS.gene22499:intergenic | 40.0% |
| !! | ATCCGAAGTTCTAGAGTCAA+AGG | + | 38105:17600-17619 | MS.gene22499:intergenic | 40.0% |
| !! | GAAGGGCATTGAAGATATGA+AGG | - | 38105:19850-19869 | MS.gene22499:intron | 40.0% |
| !! | GATACAGTGTTGTTTGTGTG+AGG | - | 38105:18276-18295 | MS.gene22499:intron | 40.0% |
| !! | GATTTGAGTAACTTTGAGGC+TGG | + | 38105:20930-20949 | MS.gene22499:intergenic | 40.0% |
| !! | TGGTTTCATGAAGAGCATCT+TGG | - | 38105:18301-18320 | MS.gene22499:intron | 40.0% |
| !! | TTTTCAGACCCACAAGTTGA+AGG | + | 38105:19404-19423 | MS.gene22499:intergenic | 40.0% |
| !!! | GAAGCTGATTTAGTTTTGGG+GGG | - | 38105:17427-17446 | MS.gene22499:CDS | 40.0% |
| AAACTCCAGCATTCCCATCA+GGG | + | 38105:17528-17547 | MS.gene22498:intergenic | 45.0% | |
| AAGACACGCCTTCAACTTGT+GGG | - | 38105:19393-19412 | MS.gene22499:CDS | 45.0% | |
| AGGATCATGTGGAATGGATG+GGG | - | 38105:21184-21203 | MS.gene22499:CDS | 45.0% | |
| AGGCTTGTAGAAACGAAACC+AGG | + | 38105:21222-21241 | MS.gene22499:intergenic | 45.0% | |
| ATCAGCAGCAGAAATTGGCT+TGG | + | 38105:20107-20126 | MS.gene22499:intergenic | 45.0% | |
| ATTTGTGAGGACAGTGTCAG+TGG | - | 38105:17700-17719 | MS.gene22499:intron | 45.0% | |
| CAGATTCCCAGAGATGAAGA+AGG | - | 38105:19230-19249 | MS.gene22499:CDS | 45.0% | |
| CAGCAACAATGTTCACACCA+AGG | + | 38105:19583-19602 | MS.gene22499:intergenic | 45.0% | |
| CAGCATCTGGATCTGGATAA+GGG | + | 38105:18240-18259 | MS.gene22499:intergenic | 45.0% | |
| CTATGTTTGGGAGTTTGGAG+AGG | - | 38105:18533-18552 | MS.gene22499:intron | 45.0% | |
| CTATTACAACTTCCACCAGG+AGG | + | 38105:19518-19537 | MS.gene22499:intergenic | 45.0% | |
| CTGCTATTACAACTTCCACC+AGG | + | 38105:19521-19540 | MS.gene22499:intergenic | 45.0% | |
| GAACTACCTGATGACCATCA+TGG | + | 38105:17573-17592 | MS.gene22499:intergenic | 45.0% | |
| GAGGATCATGTGGAATGGAT+GGG | - | 38105:21183-21202 | MS.gene22499:CDS | 45.0% | |
| GCTCAAGTTAGCAAGGACAA+AGG | - | 38105:19362-19381 | MS.gene22499:CDS | 45.0% | |
| GTAGAAAGAGTTCAAGGAGG+AGG | + | 38105:21111-21130 | MS.gene22499:intergenic | 45.0% | |
| GTATATGAGGAGGAGTTTGG+AGG | + | 38105:18738-18757 | MS.gene22499:intergenic | 45.0% | |
| GTCGAATAAAATCAGGGACC+AGG | + | 38105:17907-17926 | MS.gene22499:intergenic | 45.0% | |
| TAGGGGAGGGCTTGTAAAAA+AGG | + | 38105:18859-18878 | MS.gene22499:intergenic | 45.0% | |
| TCAGCATCTGGATCTGGATA+AGG | + | 38105:18241-18260 | MS.gene22499:intergenic | 45.0% | |
| TCGTGCAGATTGTGGAACTA+TGG | - | 38105:18074-18093 | MS.gene22499:intron | 45.0% | |
| TGACAAGGAGGACTCAATTG+TGG | - | 38105:19718-19737 | MS.gene22499:intron | 45.0% | |
| TGAGGATCATGTGGAATGGA+TGG | - | 38105:21182-21201 | MS.gene22499:CDS | 45.0% | |
| TGCTACTGCTCAAGTTAGCA+AGG | - | 38105:19355-19374 | MS.gene22499:CDS | 45.0% | |
| TGGGGCAAGACCACAATAAA+AGG | + | 38105:18958-18977 | MS.gene22499:intergenic | 45.0% | |
| TGTTCTTCAGCATCTGGATC+TGG | + | 38105:18247-18266 | MS.gene22499:intergenic | 45.0% | |
| TTGCTATGTCGTGCAGATTG+TGG | - | 38105:18066-18085 | MS.gene22499:intron | 45.0% | |
| TTTCGGAGGGTTGAGATTAG+AGG | - | 38105:18570-18589 | MS.gene22499:intron | 45.0% | |
| TTTGGGAGTTTGGAGAGGAA+TGG | - | 38105:18538-18557 | MS.gene22499:intron | 45.0% | |
| ! | CAAAGGGTACATGAAAAGGC+AGG | - | 38105:17477-17496 | MS.gene22499:CDS | 45.0% |
| ! | CAGCTGTCTTGGTGGTTTAA+AGG | - | 38105:20182-20201 | MS.gene22499:intron | 45.0% |
| ! | TGGGACTGATTGACTTTGTC+TGG | - | 38105:17939-17958 | MS.gene22499:intron | 45.0% |
| ! | TTGGTGGTTTAAAGGCGCAT+TGG | - | 38105:20190-20209 | MS.gene22499:intron | 45.0% |
| !! | AGAAATTGGCTTGGACGAGT+CGG | + | 38105:20098-20117 | MS.gene22499:intergenic | 45.0% |
| !! | AGTGTTGTTTGTGTGAGGAC+TGG | - | 38105:18281-18300 | MS.gene22499:intron | 45.0% |
| !!! | ATGGGGAGTTTTGAAGAACC+TGG | - | 38105:21201-21220 | MS.gene22499:CDS | 45.0% |
| !! | ATAAAAAAATAATAAATAGA+TGG | - | 38105:19996-20015 | MS.gene22499:intron | 5.0% |
| !!! | TTTGATTTATTTAAAATATA+AGG | - | 38105:20556-20575 | MS.gene22499:CDS | 5.0% |
| AACTCCAGCATTCCCATCAG+GGG | + | 38105:17527-17546 | MS.gene22499:intergenic | 50.0% | |
| AGGGTGAGTTTCAGCTGTCT+TGG | - | 38105:20171-20190 | MS.gene22499:intron | 50.0% | |
| CAAACTCCAGCATTCCCATC+AGG | + | 38105:17529-17548 | MS.gene22499:intergenic | 50.0% | |
| CAACCTCATCAGAAGACTCG+AGG | + | 38105:18328-18347 | MS.gene22499:intergenic | 50.0% | |
| CAGCTGAAACTCACCCTACA+CGG | + | 38105:20168-20187 | MS.gene22499:intergenic | 50.0% | |
| CCAGCCACCAATATTACCTC+AGG | + | 38105:19323-19342 | MS.gene22499:intergenic | 50.0% | |
| CTCGAGTCTTCTGATGAGGT+TGG | - | 38105:18326-18345 | MS.gene22499:intron | 50.0% | |
| GAAGACACGCCTTCAACTTG+TGG | - | 38105:19392-19411 | MS.gene22499:CDS | 50.0% | |
| GAGTTTGGAGAGGAATGGAG+GGG | - | 38105:18543-18562 | MS.gene22499:intron | 50.0% | |
| GATGTGGCACAAGCTTCTGT+TGG | - | 38105:19461-19480 | MS.gene22499:intron | 50.0% | |
| GCTGCTTCCCCAGTTATACA+TGG | - | 38105:19599-19618 | MS.gene22499:intron | 50.0% | |
| GGAGTTTGGAGAGGAATGGA+GGG | - | 38105:18542-18561 | MS.gene22499:intron | 50.0% | |
| GGCTCACCTTCTTCATCTCT+GGG | + | 38105:19239-19258 | MS.gene22499:intergenic | 50.0% | |
| GTCTTGCCATGATGGTCATC+AGG | - | 38105:17564-17583 | MS.gene22499:intron | 50.0% | |
| GTGAGTTTCAGCTGTCTTGG+TGG | - | 38105:20174-20193 | MS.gene22499:intron | 50.0% | |
| TCTACAAGCCTACGGAGCAT+AGG | - | 38105:21231-21250 | MS.gene22499:CDS | 50.0% | |
| TGCTCGTTGTCTTGCCATGA+TGG | - | 38105:17556-17575 | MS.gene22499:intron | 50.0% | |
| TGGCTCACCTTCTTCATCTC+TGG | + | 38105:19240-19259 | MS.gene22499:intergenic | 50.0% | |
| TGTGGGTCTGAAAAGCCACT+GGG | - | 38105:19410-19429 | MS.gene22499:CDS | 50.0% | |
| TTGTGGGTCTGAAAAGCCAC+TGG | - | 38105:19409-19428 | MS.gene22499:CDS | 50.0% | |
| TTTGGGAGGGGAAGGCTTTA+GGG | + | 38105:18816-18835 | MS.gene22499:intergenic | 50.0% | |
| ! | AGAAGGTGAGCCACTTTACG+AGG | - | 38105:19247-19266 | MS.gene22499:CDS | 50.0% |
| ! | AGGAGTTTGGAGGGTTTTGC+AGG | + | 38105:18728-18747 | MS.gene22499:intergenic | 50.0% |
| ! | CCTGAGGTAATATTGGTGGC+TGG | - | 38105:19320-19339 | MS.gene22499:CDS | 50.0% |
| ! | GGAGGGTTTTGCAGGGTTTT+GGG | + | 38105:18720-18739 | MS.gene22499:intergenic | 50.0% |
| ! | GGAGTTTGGAGGGTTTTGCA+GGG | + | 38105:18727-18746 | MS.gene22499:intergenic | 50.0% |
| ! | TGGAGGGTTTTGCAGGGTTT+TGG | + | 38105:18721-18740 | MS.gene22499:intergenic | 50.0% |
| !! | AATAGAGCTTTGGGAGGGGA+AGG | + | 38105:18824-18843 | MS.gene22499:intergenic | 50.0% |
| !!! | AGTTTGGGAGTTTTGAGGGG+AGG | + | 38105:18883-18902 | MS.gene22499:intergenic | 50.0% |
| !!! | GTTTGGGAGTTTTGAGGGGA+GGG | + | 38105:18882-18901 | MS.gene22499:intergenic | 50.0% |
| !!! | TTAGTTTTGGGGGGCGATGA+AGG | - | 38105:17436-17455 | MS.gene22499:CDS | 50.0% |
| AAGAATAAGCGGCGCCGTGT+AGG | - | 38105:20151-20170 | MS.gene22499:intron | 55.0% | |
| AGAATAAGCGGCGCCGTGTA+GGG | - | 38105:20152-20171 | MS.gene22499:intron | 55.0% | |
| AGGAATGGAGGGGAGGGTTT+CGG | - | 38105:18553-18572 | MS.gene22499:intron | 55.0% | |
| GGGAGTTTGGAGAGGAATGG+AGG | - | 38105:18541-18560 | MS.gene22499:intron | 55.0% | |
| GGTCCTCGAGTCTTCTGATG+AGG | - | 38105:18322-18341 | MS.gene22499:intron | 55.0% | |
| TGTGAGGACAGTGTCAGTGG+CGG | - | 38105:17703-17722 | MS.gene22499:intron | 55.0% | |
| TTGGAGAGGAATGGAGGGGA+GGG | - | 38105:18547-18566 | MS.gene22499:intron | 55.0% | |
| TTTGGAGAGGAATGGAGGGG+AGG | - | 38105:18546-18565 | MS.gene22499:intron | 55.0% | |
| ! | CTTTGGGAGGGGAAGGCTTT+AGG | + | 38105:18817-18836 | MS.gene22499:intergenic | 55.0% |
| ! | TTGGGAGGGGAAGGCTTTAG+GGG | + | 38105:18815-18834 | MS.gene22499:intergenic | 55.0% |
| !!! | GAGTTTTGAGGGGAGGGTAG+GGG | + | 38105:18876-18895 | MS.gene22499:intergenic | 55.0% |
| !!! | GGAGTTTTGAGGGGAGGGTA+GGG | + | 38105:18877-18896 | MS.gene22499:intergenic | 55.0% |
| AATGGAGGGGAGGGTTTCGG+AGG | - | 38105:18556-18575 | MS.gene22499:intron | 60.0% | |
| AATGGGGCAGGTCTTCCTCC+TGG | - | 38105:19500-19519 | MS.gene22499:intron | 60.0% | |
| ATGGAGGGGAGGGTTTCGGA+GGG | - | 38105:18557-18576 | MS.gene22499:intron | 60.0% | |
| GCATCACCTGCACCCCTGAT+GGG | - | 38105:17512-17531 | MS.gene22499:CDS | 60.0% | |
| TGCACCCCTGATGGGAATGC+TGG | - | 38105:17520-17539 | MS.gene22499:intron | 60.0% | |
| TGCATCACCTGCACCCCTGA+TGG | - | 38105:17511-17530 | MS.gene22499:CDS | 60.0% | |
| TTTGAGGGGAGGGTAGGGGA+GGG | + | 38105:18872-18891 | MS.gene22499:intergenic | 60.0% | |
| TTTGGGGGGCGATGAAGGCA+GGG | - | 38105:17441-17460 | MS.gene22499:CDS | 60.0% | |
| ! | AGCATTCCCATCAGGGGTGC+AGG | + | 38105:17521-17540 | MS.gene22499:intergenic | 60.0% |
| ! | ATCTGGATAAGGGCGCGCAC+AGG | + | 38105:18230-18249 | MS.gene22499:intergenic | 60.0% |
| !! | TGGGAGGGGAAGGCTTTAGG+GGG | + | 38105:18814-18833 | MS.gene22499:intergenic | 60.0% |
| !! | TTTTGAGGGGAGGGTAGGGG+AGG | + | 38105:18873-18892 | MS.gene22499:intergenic | 60.0% |
| !! | TTTTGGGGGGCGATGAAGGC+AGG | - | 38105:17440-17459 | MS.gene22499:CDS | 60.0% |
| !!! | GGGAGTTTTGAGGGGAGGGT+AGG | + | 38105:18878-18897 | MS.gene22499:intergenic | 60.0% |
| ! | GGACAGTGTCAGTGGCGGAG+TGG | - | 38105:17708-17727 | MS.gene22499:intron | 65.0% |
| ! | GGACGGGCTTCGCACTTTCC+TGG | - | 38105:19871-19890 | MS.gene22499:intron | 65.0% |
| GGGGCAGGTCTTCCTCCTGG+TGG | - | 38105:19503-19522 | MS.gene22499:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38105 | gene | 17427 | 21252 | 17427 | ID=MS.gene22499 |
| 38105 | mRNA | 17427 | 21252 | 17427 | ID=MS.gene22499.t1;Parent=MS.gene22499 |
| 38105 | exon | 21094 | 21252 | 21094 | ID=MS.gene22499.t1.exon1;Parent=MS.gene22499.t1 |
| 38105 | CDS | 21094 | 21252 | 21094 | ID=cds.MS.gene22499.t1;Parent=MS.gene22499.t1 |
| 38105 | exon | 20349 | 20597 | 20349 | ID=MS.gene22499.t1.exon2;Parent=MS.gene22499.t1 |
| 38105 | CDS | 20349 | 20597 | 20349 | ID=cds.MS.gene22499.t1;Parent=MS.gene22499.t1 |
| 38105 | exon | 18787 | 19446 | 18787 | ID=MS.gene22499.t1.exon3;Parent=MS.gene22499.t1 |
| 38105 | CDS | 18787 | 19446 | 18787 | ID=cds.MS.gene22499.t1;Parent=MS.gene22499.t1 |
| 38105 | exon | 17427 | 17537 | 17427 | ID=MS.gene22499.t1.exon4;Parent=MS.gene22499.t1 |
| 38105 | CDS | 17427 | 17537 | 17427 | ID=cds.MS.gene22499.t1;Parent=MS.gene22499.t1 |
| Gene Sequence |
| Protein sequence |
