AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23041

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23041.t1 MTR_7g107200 94.444 378 21 0 1 378 1 378 0.0 749
MS.gene23041.t1 MTR_1g042160 40.374 374 157 4 1 374 1 308 6.41e-94 283
MS.gene23041.t1 MTR_8g011730 35.969 392 176 10 11 376 12 354 7.29e-68 218
MS.gene23041.t1 MTR_7g107170 47.414 232 101 4 145 376 55 265 7.88e-58 189
MS.gene23041.t1 MTR_7g107170 62.791 86 32 0 279 364 1 86 1.79e-25 104
MS.gene23041.t1 MTR_7g107160 53.896 154 57 5 233 378 300 447 3.19e-40 148
MS.gene23041.t1 MTR_7g107160 36.646 161 91 3 2 153 119 277 2.08e-26 110
MS.gene23041.t1 MTR_7g107160 40.650 123 63 2 72 194 3 115 2.20e-21 95.5
MS.gene23041.t1 MTR_2g034780 43.609 133 71 2 213 345 109 237 2.81e-32 122
MS.gene23041.t1 MTR_3g079840 42.636 129 71 2 13 141 57 182 2.29e-29 120
MS.gene23041.t1 MTR_3g079840 42.636 129 71 2 13 141 56 181 2.38e-29 120
MS.gene23041.t1 MTR_5g086700 42.636 129 71 2 13 141 61 186 3.77e-29 119
MS.gene23041.t1 MTR_5g086700 42.636 129 71 2 13 141 61 186 4.05e-29 119
MS.gene23041.t1 MTR_1g041240 38.509 161 87 3 13 165 57 213 1.02e-28 118
MS.gene23041.t1 MTR_1g041240 38.509 161 87 3 13 165 58 214 1.04e-28 118
MS.gene23041.t1 MTR_1g041240 38.509 161 87 3 13 165 59 215 1.04e-28 118
MS.gene23041.t1 MTR_5g091450 40.157 127 74 2 13 139 33 157 1.35e-26 112
MS.gene23041.t1 MTR_5g091180 34.646 127 81 2 13 139 46 170 1.29e-18 88.2
MS.gene23041.t1 MTR_5g091550 31.818 154 98 3 12 165 18 164 3.72e-18 86.3
MS.gene23041.t1 MTR_5g091550 33.557 149 92 3 12 160 18 159 3.91e-18 86.3
MS.gene23041.t1 MTR_3g106700 30.657 137 87 1 13 141 406 542 2.02e-15 78.6
MS.gene23041.t1 MTR_4g123750 30.935 139 85 4 17 146 23 159 9.18e-13 68.9
MS.gene23041.t1 MTR_8g006190 32.308 130 83 3 25 149 3 132 1.92e-12 68.6
MS.gene23041.t1 MTR_2g096285 78.788 33 7 0 215 247 44 76 2.45e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23041.t1 AT3G11910 45.736 129 67 2 13 141 54 179 6.41e-30 122
MS.gene23041.t1 AT3G11910 45.736 129 67 2 13 141 54 179 6.41e-30 122
MS.gene23041.t1 AT3G11910 45.736 129 67 2 13 141 55 180 6.41e-30 122
MS.gene23041.t1 AT3G11910 45.736 129 67 2 13 141 55 180 6.41e-30 122
MS.gene23041.t1 AT5G06600 44.186 129 69 2 13 141 56 181 4.12e-29 119
MS.gene23041.t1 AT5G06600 44.186 129 69 2 13 141 55 180 4.24e-29 119
MS.gene23041.t1 AT5G06600 44.186 129 69 2 13 141 56 181 4.36e-29 119
MS.gene23041.t1 AT3G58250 36.923 130 81 1 12 141 9 137 2.13e-23 99.8
MS.gene23041.t1 AT3G58270 34.884 129 81 2 13 141 8 133 2.16e-16 80.1
MS.gene23041.t1 AT3G58270 34.884 129 81 2 13 141 8 133 2.16e-16 80.1
MS.gene23041.t1 AT3G58270 34.884 129 81 2 13 141 8 133 2.16e-16 80.1
MS.gene23041.t1 AT3G58210 31.783 129 87 1 13 141 8 135 2.80e-16 79.3
MS.gene23041.t1 AT3G58340 31.250 128 85 2 12 139 7 131 1.99e-15 76.6
MS.gene23041.t1 AT3G58340 31.250 128 85 2 12 139 7 131 2.14e-15 76.6
MS.gene23041.t1 AT3G58350 31.387 137 88 4 7 141 4 136 2.26e-15 76.6
MS.gene23041.t1 AT3G58350 31.387 137 88 4 7 141 4 136 2.26e-15 76.6
MS.gene23041.t1 AT3G58410 32.031 128 81 3 12 139 7 128 2.71e-15 76.6
MS.gene23041.t1 AT3G58370 33.333 129 82 3 13 139 9 135 4.51e-15 75.5
MS.gene23041.t1 AT3G58360 26.728 217 147 5 10 217 5 218 7.69e-15 74.7
MS.gene23041.t1 AT2G05420 31.343 134 84 3 14 141 10 141 8.87e-14 71.6
MS.gene23041.t1 AT2G25320 29.197 137 88 2 13 141 404 539 1.92e-13 72.8
MS.gene23041.t1 AT2G25320 31.343 134 86 5 16 145 75 206 2.59e-11 65.9
MS.gene23041.t1 AT2G25320 29.197 137 88 2 13 141 405 540 1.94e-13 72.8
MS.gene23041.t1 AT2G25320 31.343 134 86 5 16 145 76 207 2.64e-11 65.9
MS.gene23041.t1 AT2G25320 29.197 137 88 2 13 141 405 540 3.46e-13 71.6
MS.gene23041.t1 AT2G25320 31.343 134 86 5 16 145 76 207 2.94e-11 65.9
MS.gene23041.t1 AT3G17380 31.008 129 85 2 17 141 25 153 3.84e-13 70.1
MS.gene23041.t1 AT2G25330 32.593 135 83 2 13 139 359 493 5.99e-13 70.9
MS.gene23041.t1 AT2G25330 28.750 160 104 6 16 167 50 207 1.07e-11 67.0
MS.gene23041.t1 AT3G58200 34.454 119 70 4 13 128 8 121 1.24e-12 68.6
MS.gene23041.t1 AT3G58260 30.769 130 87 3 14 141 9 137 3.09e-12 67.4
MS.gene23041.t1 AT2G05410 29.688 128 88 2 14 141 9 134 9.65e-12 65.9
MS.gene23041.t1 AT3G58290 29.197 137 86 4 12 139 10 144 3.59e-11 63.9
MS.gene23041.t1 AT5G52330 30.709 127 82 4 9 135 16 136 6.22e-11 63.9
MS.gene23041.t1 AT5G52330 30.709 127 82 4 9 135 16 136 6.22e-11 63.9
MS.gene23041.t1 AT5G52330 30.709 127 82 4 9 135 16 136 6.22e-11 63.9

Find 93 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAACATGTCAATTTATT+TGG 0.127834 7.2:+7089413 MS.gene23041:CDS
TGGGAGGAACTTGAGATATT+TGG 0.152055 7.2:+7090632 MS.gene23041:CDS
CTTATGGATTTCATGGGTTT+GGG 0.212202 7.2:+7090413 MS.gene23041:CDS
TTGAATGTTGAACTAGGATA+TGG 0.234183 7.2:+7090866 MS.gene23041:CDS
ATACTCAATTGGTGAGCTTA+TGG 0.239009 7.2:+7090397 MS.gene23041:CDS
GCAATCTCCCAATTCTTATC+AGG 0.246927 7.2:+7089443 MS.gene23041:CDS
GCTTATGGATTTCATGGGTT+TGG 0.253211 7.2:+7090412 MS.gene23041:CDS
GAATCGAACCGGCAACTTAA+TGG 0.259563 7.2:+7090211 MS.gene23041:CDS
TCGGAAAGAGATTCCAGATT+TGG 0.279805 7.2:-7090317 None:intergenic
TGAATGGGCTTTCACCGCTT+TGG 0.308949 7.2:+7090532 MS.gene23041:CDS
CTTTCGCCTTTCTAGTCTTA+AGG 0.313960 7.2:-7090571 None:intergenic
TCCGAGCCTTTCGTCCTTTG+CGG 0.333325 7.2:+7089241 MS.gene23041:CDS
AGGATTCTTGTTTACCCATA+TGG 0.340511 7.2:+7089375 MS.gene23041:CDS
GAATGGGCTTTCACCGCTTT+GGG 0.344202 7.2:+7090533 MS.gene23041:CDS
TGGTGAGCTTATGGATTTCA+TGG 0.358484 7.2:+7090406 MS.gene23041:CDS
GGAGAGGCTTAAGACAAAAT+TGG 0.358932 7.2:+7090775 MS.gene23041:CDS
GGACTAGAGATGTGACATTT+AGG 0.362008 7.2:+7089469 MS.gene23041:CDS
GTATCGTTCCCGTTCCCATA+TGG 0.372671 7.2:-7089390 None:intergenic
AGTCCCGCCCTGATAAGAAT+TGG 0.374270 7.2:-7089451 None:intergenic
TAGTGAAGCCATTAAGTTGC+CGG 0.387507 7.2:-7090219 None:intergenic
ACGAACTAATATAGGAAATT+CGG 0.387641 7.2:-7090336 None:intergenic
GCACTTGGACTTCAGACCTT+GGG 0.395100 7.2:-7090295 None:intergenic
TGAAGTCCAAGTGCCAAATC+TGG 0.396917 7.2:+7090304 MS.gene23041:CDS
TGAGATATTTGGATTTGATC+TGG 0.403485 7.2:+7090643 MS.gene23041:CDS
TCATATTAGTGGAGGACATA+TGG 0.408522 7.2:+7090268 MS.gene23041:CDS
TTGTTTACCCATATGGGAAC+GGG 0.418270 7.2:+7089382 MS.gene23041:CDS
AATATGACTACCATATGTTA+TGG 0.423997 7.2:-7090252 None:intergenic
GTGAACGATAGTTGTATTGT+TGG 0.429733 7.2:+7090146 MS.gene23041:CDS
TTGATGGAAGAAGGCTTCAA+TGG 0.434142 7.2:+7090836 MS.gene23041:CDS
GGATTCTTGTTTACCCATAT+GGG 0.441141 7.2:+7089376 MS.gene23041:CDS
CATAGCAAGAGACTTGTTGA+TGG 0.442516 7.2:+7090820 MS.gene23041:CDS
TCCATGTCAGTGTCTCTTGT+AGG 0.444931 7.2:-7090365 None:intergenic
GGCTCAGTACGAACTAATAT+AGG 0.448602 7.2:-7090344 None:intergenic
TGAGCTTCATAATCATTGCC+TGG 0.455761 7.2:+7090115 MS.gene23041:CDS
GAGATTCCAGATTTGGCACT+TGG 0.456893 7.2:-7090310 None:intergenic
TCGTCCTTTGCGGTTATCCA+TGG 0.459256 7.2:+7089251 MS.gene23041:CDS
AAGTCGCAGGTTTACTGAAT+GGG 0.461356 7.2:+7090517 MS.gene23041:CDS
TTATTTCCTTAAGACTAGAA+AGG 0.464823 7.2:+7090565 MS.gene23041:CDS
TATCGTTCCCGTTCCCATAT+GGG 0.473405 7.2:-7089389 None:intergenic
TATTTGGATTTGATCTGGCT+TGG 0.474225 7.2:+7090648 MS.gene23041:CDS
TGAATGTTGAACTAGGATAT+GGG 0.479501 7.2:+7090867 MS.gene23041:CDS
GAGAATGAAATGAATCGAAC+CGG 0.483272 7.2:+7090200 MS.gene23041:CDS
AGAGACTTGTTGATGGAAGA+AGG 0.484271 7.2:+7090827 MS.gene23041:CDS
TCAGTGAAAGGGAAAGAGAC+TGG 0.486355 7.2:+7090066 MS.gene23041:CDS
TTATCTAACTCCATAACATA+TGG 0.486858 7.2:+7090242 MS.gene23041:CDS
GTCCCGCCCTGATAAGAATT+GGG 0.491338 7.2:-7089450 None:intergenic
TTTCATGGGTTTGGGGCAAG+TGG 0.492155 7.2:+7090421 MS.gene23041:CDS
CTCATCATGTGTTCAGTGAA+AGG 0.492761 7.2:+7090054 MS.gene23041:CDS
CATGAATAAGCAAGCTTGCA+AGG 0.496067 7.2:+7090595 MS.gene23041:CDS
TCATCATGTGTTCAGTGAAA+GGG 0.497055 7.2:+7090055 MS.gene23041:CDS
GAAGTCGCAGGTTTACTGAA+TGG 0.498173 7.2:+7090516 MS.gene23041:CDS
CTCCCAATTCTTATCAGGGC+GGG 0.499210 7.2:+7089448 MS.gene23041:CDS
GGCACTTGGACTTCAGACCT+TGG 0.511796 7.2:-7090296 None:intergenic
GAGCTTCATAATCATTGCCT+GGG 0.514393 7.2:+7090116 MS.gene23041:CDS
GGAGTAAACCTTCTCGATGC+TGG 0.515041 7.2:-7089221 None:intergenic
ACATATGGTAGTCATATTAG+TGG 0.518383 7.2:+7090257 MS.gene23041:CDS
GGAAGGTATAGCGTTGGAAA+TGG 0.522456 7.2:+7090754 MS.gene23041:CDS
CAGTGAAAGGGAAAGAGACT+GGG 0.524254 7.2:+7090067 MS.gene23041:CDS
TGATGGAAGAAGGCTTCAAT+GGG 0.525936 7.2:+7090837 MS.gene23041:CDS
GGTGAGCTTATGGATTTCAT+GGG 0.529533 7.2:+7090407 MS.gene23041:CDS
CTTGTTTACCCATATGGGAA+CGG 0.538005 7.2:+7089381 MS.gene23041:CDS
GAATGGAGGATCAACAATCT+AGG 0.539057 7.2:+7089146 None:intergenic
CAATCTCCCAATTCTTATCA+GGG 0.540479 7.2:+7089444 MS.gene23041:CDS
ACCGCAAAGGACGAAAGGCT+CGG 0.541668 7.2:-7089242 None:intergenic
CGTGGAGAAAGCTGTGCAGA+TGG 0.545872 7.2:+7090712 MS.gene23041:CDS
CTTAAAGCAGATTGAACATG+AGG 0.548958 7.2:-7090677 None:intergenic
AGAGATTTGAATGTTGAACT+AGG 0.549500 7.2:+7090860 MS.gene23041:CDS
GTCAGCAGAGGAGAAGTCGC+AGG 0.549739 7.2:+7090504 MS.gene23041:CDS
GTTTGAGAAATTCTCATGGA+AGG 0.552728 7.2:+7089177 MS.gene23041:CDS
GAACATGCTTCCTCTAGTAG+TGG 0.556414 7.2:-7090458 None:intergenic
TGATTATGAAGCTCAACTAA+AGG 0.561446 7.2:-7090107 None:intergenic
AGCTTCATAATCATTGCCTG+GGG 0.575530 7.2:+7090117 MS.gene23041:CDS
GGATAACCGCAAAGGACGAA+AGG 0.585386 7.2:-7089247 None:intergenic
GAATGCGGAAGGTATAGCGT+TGG 0.587299 7.2:+7090748 MS.gene23041:CDS
TGCTGACACTCAATAAGTGA+AGG 0.593249 7.2:-7090488 None:intergenic
TTATGGATTTCATGGGTTTG+GGG 0.602442 7.2:+7090414 MS.gene23041:CDS
CACTTATTGAGTGTCAGCAG+AGG 0.606047 7.2:+7090492 MS.gene23041:CDS
TAGTTGTATTGTTGGTGCTG+AGG 0.607043 7.2:+7090154 MS.gene23041:CDS
ATATGTTTGAGAAATTCTCA+TGG 0.610757 7.2:+7089173 MS.gene23041:CDS
TCGAGTGACCAGCATCGAGA+AGG 0.620117 7.2:+7089213 MS.gene23041:CDS
ATGCTGAAGGAGAATGCGGA+AGG 0.629719 7.2:+7090737 MS.gene23041:CDS
GGAGATGCTGAAGGAGAATG+CGG 0.647398 7.2:+7090733 MS.gene23041:CDS
TATCGTTCACAATAAACCCC+AGG 0.658486 7.2:-7090133 None:intergenic
AATACCATGGATAACCGCAA+AGG 0.660868 7.2:-7089255 None:intergenic
GCCTACAAGAGACACTGACA+TGG 0.667114 7.2:+7090364 MS.gene23041:CDS
GTATAGCGTTGGAAATGGAG+AGG 0.668129 7.2:+7090759 MS.gene23041:CDS
TATGGTAGTCATATTAGTGG+AGG 0.668965 7.2:+7090260 MS.gene23041:CDS
GAGGACATATGGAAGTCCCA+AGG 0.678751 7.2:+7090279 MS.gene23041:CDS
TGTGCAGATGGAGATGCTGA+AGG 0.682175 7.2:+7090724 MS.gene23041:CDS
AGTGAAAGGGAAAGAGACTG+GGG 0.689762 7.2:+7090068 MS.gene23041:CDS
TCTCCCAATTCTTATCAGGG+CGG 0.696162 7.2:+7089447 MS.gene23041:CDS
TTTAAGAATGAAAAGTTACG+TGG 0.706847 7.2:+7090694 MS.gene23041:CDS
ATAAAGAACTCTGCCCAAAG+CGG 0.731605 7.2:-7090546 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACTTAATCTTTTTTTTT+TGG + chr7.2:7089705-7089724 MS.gene23041:intron 10.0%
!!! ATTTTGGTATTTTTATTTTA+CGG + chr7.2:7089874-7089893 MS.gene23041:intron 10.0%
!! AAATAAAAATACCAAAATAG+AGG - chr7.2:7089872-7089891 None:intergenic 15.0%
!! AAATTGAGAAAATAAACATT+AGG - chr7.2:7089844-7089863 None:intergenic 15.0%
!! ATTTATTCATTTAAATACCA+TGG - chr7.2:7089271-7089290 None:intergenic 15.0%
!!! ATGTTTATTTTCTCAATTTT+TGG + chr7.2:7089845-7089864 MS.gene23041:intron 15.0%
!!! TTTTGGTATTTTTATTTTAC+GGG + chr7.2:7089875-7089894 MS.gene23041:intron 15.0%
!! AAACAACATGTCAATTTATT+TGG + chr7.2:7089413-7089432 MS.gene23041:CDS 20.0%
!! AAATAAACATTAGGAGATTA+AGG - chr7.2:7089835-7089854 None:intergenic 20.0%
!! AATAAACATTAGGAGATTAA+GGG - chr7.2:7089834-7089853 None:intergenic 20.0%
!! ACCAAAGCAATTAATATAAA+TGG - chr7.2:7089343-7089362 None:intergenic 20.0%
!! ACCATTTATATTAATTGCTT+TGG + chr7.2:7089339-7089358 MS.gene23041:intron 20.0%
!! GTTAAGATAATGAGTTTAAA+TGG + chr7.2:7089591-7089610 MS.gene23041:intron 20.0%
!! TATGAAATGAAGAGTTAATT+TGG - chr7.2:7090017-7090036 None:intergenic 20.0%
!!! GAATTTTTCAAATACTCAAT+TGG + chr7.2:7090386-7090405 MS.gene23041:CDS 20.0%
!!! TATATTAATTGCTTTGGTTT+TGG + chr7.2:7089345-7089364 MS.gene23041:intron 20.0%
! AATATGACTACCATATGTTA+TGG - chr7.2:7090255-7090274 None:intergenic 25.0%
! ACGAACTAATATAGGAAATT+CGG - chr7.2:7090339-7090358 None:intergenic 25.0%
! ATAAACATTAGGAGATTAAG+GGG - chr7.2:7089833-7089852 None:intergenic 25.0%
! ATATGTTTGAGAAATTCTCA+TGG + chr7.2:7089173-7089192 MS.gene23041:CDS 25.0%
! CTTTAATCAATGATATGTAG+TGG + chr7.2:7089748-7089767 MS.gene23041:intron 25.0%
! GGAATAAAATGAATTAGACA+AGG - chr7.2:7089559-7089578 None:intergenic 25.0%
! TTATCTAACTCCATAACATA+TGG + chr7.2:7090242-7090261 MS.gene23041:CDS 25.0%
! TTATTTCCTTAAGACTAGAA+AGG + chr7.2:7090565-7090584 MS.gene23041:CDS 25.0%
! TTCAATAAATTCTGACATGT+AGG - chr7.2:7089295-7089314 None:intergenic 25.0%
! TTTAAGAATGAAAAGTTACG+TGG + chr7.2:7090694-7090713 MS.gene23041:CDS 25.0%
!! AAGTTATAAGACTGACTTAA+TGG - chr7.2:7089692-7089711 None:intergenic 25.0%
!! CAAGGATCTTCAAATTTTAT+GGG + chr7.2:7090613-7090632 MS.gene23041:CDS 25.0%
!!! TTATTTTACGGGTTAAACAT+GGG + chr7.2:7089886-7089905 MS.gene23041:intron 25.0%
!!! TTTATTTTACGGGTTAAACA+TGG + chr7.2:7089885-7089904 MS.gene23041:intron 25.0%
AATGAATTAGACAAGGAAAG+AGG - chr7.2:7089552-7089571 None:intergenic 30.0%
ACATATGGTAGTCATATTAG+TGG + chr7.2:7090257-7090276 MS.gene23041:CDS 30.0%
AGAGATTTGAATGTTGAACT+AGG + chr7.2:7090860-7090879 MS.gene23041:CDS 30.0%
GATATGTAGTGGCAATATAA+TGG + chr7.2:7089759-7089778 MS.gene23041:intron 30.0%
TATCTTAACCTTGAAAGCAA+GGG - chr7.2:7089580-7089599 None:intergenic 30.0%
TGAATGTTGAACTAGGATAT+GGG + chr7.2:7090867-7090886 MS.gene23041:CDS 30.0%
TGAGATATTTGGATTTGATC+TGG + chr7.2:7090643-7090662 MS.gene23041:CDS 30.0%
TGATTATGAAGCTCAACTAA+AGG - chr7.2:7090110-7090129 None:intergenic 30.0%
TTATCTTAACCTTGAAAGCA+AGG - chr7.2:7089581-7089600 None:intergenic 30.0%
TTGAATGTTGAACTAGGATA+TGG + chr7.2:7090866-7090885 MS.gene23041:CDS 30.0%
! ATATTTTGTTCCACTACTAG+AGG + chr7.2:7090448-7090467 MS.gene23041:CDS 30.0%
! ATTTTATTCCCTTGCTTTCA+AGG + chr7.2:7089569-7089588 MS.gene23041:intron 30.0%
! GCAAGGATCTTCAAATTTTA+TGG + chr7.2:7090612-7090631 MS.gene23041:CDS 30.0%
!! GCAATATAATGGACTTTCAT+TGG + chr7.2:7089770-7089789 MS.gene23041:intron 30.0%
!! TATTTTACGGGTTAAACATG+GGG + chr7.2:7089887-7089906 MS.gene23041:intron 30.0%
!!! ATTGCTTTGGTTTTGGTTTT+AGG + chr7.2:7089352-7089371 MS.gene23041:intron 30.0%
!!! CAATTTTTGGTCCTCTATTT+TGG + chr7.2:7089858-7089877 MS.gene23041:intron 30.0%
ACAAAACCTCTGTATTACGT+TGG - chr7.2:7089931-7089950 None:intergenic 35.0%
ATACTCAATTGGTGAGCTTA+TGG + chr7.2:7090397-7090416 MS.gene23041:CDS 35.0%
CAAAACCTCTGTATTACGTT+GGG - chr7.2:7089930-7089949 None:intergenic 35.0%
CAATCTCCCAATTCTTATCA+GGG + chr7.2:7089444-7089463 MS.gene23041:CDS 35.0%
CTTAAAGCAGATTGAACATG+AGG - chr7.2:7090680-7090699 None:intergenic 35.0%
CTTATGGATTTCATGGGTTT+GGG + chr7.2:7090413-7090432 MS.gene23041:CDS 35.0%
GAGAATGAAATGAATCGAAC+CGG + chr7.2:7090200-7090219 MS.gene23041:CDS 35.0%
GTGAACGATAGTTGTATTGT+TGG + chr7.2:7090146-7090165 MS.gene23041:CDS 35.0%
GTTTGAGAAATTCTCATGGA+AGG + chr7.2:7089177-7089196 MS.gene23041:CDS 35.0%
TATGGTAGTCATATTAGTGG+AGG + chr7.2:7090260-7090279 MS.gene23041:CDS 35.0%
TATTTGGATTTGATCTGGCT+TGG + chr7.2:7090648-7090667 MS.gene23041:CDS 35.0%
TCATATTAGTGGAGGACATA+TGG + chr7.2:7090268-7090287 MS.gene23041:CDS 35.0%
TCATCATGTGTTCAGTGAAA+GGG + chr7.2:7090055-7090074 MS.gene23041:CDS 35.0%
TTATGGATTTCATGGGTTTG+GGG + chr7.2:7090414-7090433 MS.gene23041:CDS 35.0%
! AGGATTCTTGTTTACCCATA+TGG + chr7.2:7089375-7089394 MS.gene23041:CDS 35.0%
! GGATCTTCAAATTTTATGGG+AGG + chr7.2:7090616-7090635 MS.gene23041:CDS 35.0%
! GGATTCTTGTTTACCCATAT+GGG + chr7.2:7089376-7089395 MS.gene23041:CDS 35.0%
!!! CGTACGTTTTTTGATTGACA+TGG - chr7.2:7089523-7089542 None:intergenic 35.0%
AAGTCGCAGGTTTACTGAAT+GGG + chr7.2:7090517-7090536 MS.gene23041:CDS 40.0%
AATACCATGGATAACCGCAA+AGG - chr7.2:7089258-7089277 None:intergenic 40.0%
AGCTTCATAATCATTGCCTG+GGG + chr7.2:7090117-7090136 MS.gene23041:CDS 40.0%
ATAAAGAACTCTGCCCAAAG+CGG - chr7.2:7090549-7090568 None:intergenic 40.0%
CATGAATAAGCAAGCTTGCA+AGG + chr7.2:7090595-7090614 MS.gene23041:CDS 40.0%
CTCATCATGTGTTCAGTGAA+AGG + chr7.2:7090054-7090073 MS.gene23041:CDS 40.0%
CTTGTTTACCCATATGGGAA+CGG + chr7.2:7089381-7089400 MS.gene23041:CDS 40.0%
GAATTAGACAAGGAAAGAGG+AGG - chr7.2:7089549-7089568 None:intergenic 40.0%
GAGCTTCATAATCATTGCCT+GGG + chr7.2:7090116-7090135 MS.gene23041:CDS 40.0%
GCAATCTCCCAATTCTTATC+AGG + chr7.2:7089443-7089462 MS.gene23041:CDS 40.0%
GCTTATGGATTTCATGGGTT+TGG + chr7.2:7090412-7090431 MS.gene23041:CDS 40.0%
GGACTAGAGATGTGACATTT+AGG + chr7.2:7089469-7089488 MS.gene23041:CDS 40.0%
GGAGAGGCTTAAGACAAAAT+TGG + chr7.2:7090775-7090794 MS.gene23041:CDS 40.0%
GGCTCAGTACGAACTAATAT+AGG - chr7.2:7090347-7090366 None:intergenic 40.0%
GGTGAGCTTATGGATTTCAT+GGG + chr7.2:7090407-7090426 MS.gene23041:CDS 40.0%
TATCGTTCACAATAAACCCC+AGG - chr7.2:7090136-7090155 None:intergenic 40.0%
TCGGAAAGAGATTCCAGATT+TGG - chr7.2:7090320-7090339 None:intergenic 40.0%
TGAGCTTCATAATCATTGCC+TGG + chr7.2:7090115-7090134 MS.gene23041:CDS 40.0%
TGATGGAAGAAGGCTTCAAT+GGG + chr7.2:7090837-7090856 MS.gene23041:CDS 40.0%
TGCTGACACTCAATAAGTGA+AGG - chr7.2:7090491-7090510 None:intergenic 40.0%
TGGGAGGAACTTGAGATATT+TGG + chr7.2:7090632-7090651 MS.gene23041:CDS 40.0%
TGGTGAGCTTATGGATTTCA+TGG + chr7.2:7090406-7090425 MS.gene23041:CDS 40.0%
TTGATGGAAGAAGGCTTCAA+TGG + chr7.2:7090836-7090855 MS.gene23041:CDS 40.0%
TTGTTTACCCATATGGGAAC+GGG + chr7.2:7089382-7089401 MS.gene23041:CDS 40.0%
! TAGTGAAGCCATTAAGTTGC+CGG - chr7.2:7090222-7090241 None:intergenic 40.0%
!! AGAGACTTGTTGATGGAAGA+AGG + chr7.2:7090827-7090846 MS.gene23041:CDS 40.0%
!! CATAGCAAGAGACTTGTTGA+TGG + chr7.2:7090820-7090839 MS.gene23041:CDS 40.0%
!! CTTTCGCCTTTCTAGTCTTA+AGG - chr7.2:7090574-7090593 None:intergenic 40.0%
!! TAGTTGTATTGTTGGTGCTG+AGG + chr7.2:7090154-7090173 MS.gene23041:CDS 40.0%
!!! GCTTTGGTTTTGGTTTTAGG+AGG + chr7.2:7089355-7089374 MS.gene23041:intron 40.0%
AACCTCTGTATTACGTTGGG+AGG - chr7.2:7089927-7089946 None:intergenic 45.0%
AGTGAAAGGGAAAGAGACTG+GGG + chr7.2:7090068-7090087 MS.gene23041:CDS 45.0%
CACTTATTGAGTGTCAGCAG+AGG + chr7.2:7090492-7090511 MS.gene23041:CDS 45.0%
CAGTGAAAGGGAAAGAGACT+GGG + chr7.2:7090067-7090086 MS.gene23041:CDS 45.0%
GAACATGCTTCCTCTAGTAG+TGG - chr7.2:7090461-7090480 None:intergenic 45.0%
GAAGTCGCAGGTTTACTGAA+TGG + chr7.2:7090516-7090535 MS.gene23041:CDS 45.0%
GAATCGAACCGGCAACTTAA+TGG + chr7.2:7090211-7090230 MS.gene23041:CDS 45.0%
GAGATTCCAGATTTGGCACT+TGG - chr7.2:7090313-7090332 None:intergenic 45.0%
TATCGTTCCCGTTCCCATAT+GGG - chr7.2:7089392-7089411 None:intergenic 45.0%
TCAGTGAAAGGGAAAGAGAC+TGG + chr7.2:7090066-7090085 MS.gene23041:CDS 45.0%
TCCATGTCAGTGTCTCTTGT+AGG - chr7.2:7090368-7090387 None:intergenic 45.0%
TCTCCCAATTCTTATCAGGG+CGG + chr7.2:7089447-7089466 MS.gene23041:CDS 45.0%
TGAAGTCCAAGTGCCAAATC+TGG + chr7.2:7090304-7090323 MS.gene23041:CDS 45.0%
TTCCTCCCAACGTAATACAG+AGG + chr7.2:7089922-7089941 MS.gene23041:intron 45.0%
! GGAAGGTATAGCGTTGGAAA+TGG + chr7.2:7090754-7090773 MS.gene23041:CDS 45.0%
! GTATAGCGTTGGAAATGGAG+AGG + chr7.2:7090759-7090778 MS.gene23041:CDS 45.0%
! TTTACGGGTTAAACATGGGG+TGG + chr7.2:7089890-7089909 MS.gene23041:intron 45.0%
!!! ATCTTTTTTTTTTTTTTTTT+TGG + chr7.2:7089632-7089651 MS.gene23041:intron 5.0%
AGTCCCGCCCTGATAAGAAT+TGG - chr7.2:7089454-7089473 None:intergenic 50.0%
ATGCTGAAGGAGAATGCGGA+AGG + chr7.2:7090737-7090756 MS.gene23041:CDS 50.0%
CTCCCAATTCTTATCAGGGC+GGG + chr7.2:7089448-7089467 MS.gene23041:CDS 50.0%
GAGGACATATGGAAGTCCCA+AGG + chr7.2:7090279-7090298 MS.gene23041:CDS 50.0%
GCACTTGGACTTCAGACCTT+GGG - chr7.2:7090298-7090317 None:intergenic 50.0%
GCCTACAAGAGACACTGACA+TGG + chr7.2:7090364-7090383 MS.gene23041:CDS 50.0%
GGAGATGCTGAAGGAGAATG+CGG + chr7.2:7090733-7090752 MS.gene23041:CDS 50.0%
GGAGTAAACCTTCTCGATGC+TGG - chr7.2:7089224-7089243 None:intergenic 50.0%
GGATAACCGCAAAGGACGAA+AGG - chr7.2:7089250-7089269 None:intergenic 50.0%
GTATCGTTCCCGTTCCCATA+TGG - chr7.2:7089393-7089412 None:intergenic 50.0%
GTCCCGCCCTGATAAGAATT+GGG - chr7.2:7089453-7089472 None:intergenic 50.0%
TCGTCCTTTGCGGTTATCCA+TGG + chr7.2:7089251-7089270 MS.gene23041:CDS 50.0%
TGTGCAGATGGAGATGCTGA+AGG + chr7.2:7090724-7090743 MS.gene23041:CDS 50.0%
! GAATGCGGAAGGTATAGCGT+TGG + chr7.2:7090748-7090767 MS.gene23041:CDS 50.0%
! GAATGGGCTTTCACCGCTTT+GGG + chr7.2:7090533-7090552 MS.gene23041:CDS 50.0%
! TGAATGGGCTTTCACCGCTT+TGG + chr7.2:7090532-7090551 MS.gene23041:CDS 50.0%
! TTTCATGGGTTTGGGGCAAG+TGG + chr7.2:7090421-7090440 MS.gene23041:CDS 50.0%
ACCGCAAAGGACGAAAGGCT+CGG - chr7.2:7089245-7089264 None:intergenic 55.0%
CGTGGAGAAAGCTGTGCAGA+TGG + chr7.2:7090712-7090731 MS.gene23041:CDS 55.0%
GGCACTTGGACTTCAGACCT+TGG - chr7.2:7090299-7090318 None:intergenic 55.0%
TCCGAGCCTTTCGTCCTTTG+CGG + chr7.2:7089241-7089260 MS.gene23041:CDS 55.0%
! TCGAGTGACCAGCATCGAGA+AGG + chr7.2:7089213-7089232 MS.gene23041:CDS 55.0%
GTCAGCAGAGGAGAAGTCGC+AGG + chr7.2:7090504-7090523 MS.gene23041:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7089148 7090898 7089148 ID=MS.gene23041
chr7.2 mRNA 7089148 7090898 7089148 ID=MS.gene23041.t1;Parent=MS.gene23041
chr7.2 exon 7089148 7089272 7089148 ID=MS.gene23041.t1.exon1;Parent=MS.gene23041.t1
chr7.2 CDS 7089148 7089272 7089148 ID=cds.MS.gene23041.t1;Parent=MS.gene23041.t1
chr7.2 exon 7089374 7089537 7089374 ID=MS.gene23041.t1.exon2;Parent=MS.gene23041.t1
chr7.2 CDS 7089374 7089537 7089374 ID=cds.MS.gene23041.t1;Parent=MS.gene23041.t1
chr7.2 exon 7090051 7090898 7090051 ID=MS.gene23041.t1.exon3;Parent=MS.gene23041.t1
chr7.2 CDS 7090051 7090898 7090051 ID=cds.MS.gene23041.t1;Parent=MS.gene23041.t1
Gene Sequence

>MS.gene23041

ATGGAGGATCAACAATCTAGGTTTGATATGTTTGAGAAATTCTCATGGAAGGTTGAGAAATTCGCTCGAGTGACCAGCATCGAGAAGGTTTACTCCGAGCCTTTCGTCCTTTGCGGTTATCCATGGTATTTAAATGAATAAATTCCTACATGTCAGAATTTATTGAATAAGTAGATTTTGTGCTCTTTGACACCATTTATATTAATTGCTTTGGTTTTGGTTTTAGGAGGATTCTTGTTTACCCATATGGGAACGGGAACGATACAAACAACATGTCAATTTATTTGGATACTATGCAATCTCCCAATTCTTATCAGGGCGGGACTAGAGATGTGACATTTAGGCTTGTTGTATTTAATCAGTTCGATAGCACCATGTCAATCAAAAAACGTACGATTCCTCCTCTTTCCTTGTCTAATTCATTTTATTCCCTTGCTTTCAAGGTTAAGATAATGAGTTTAAATGGAATACACTTACATTGTAAATCTTTTTTTTTTTTTTTTTTGGCTTATACATTAAGTGTATGTAAGTCAATCAGAGTCCATTAAGTCAGTCTTATAACTTAATCTTTTTTTTTTGGACTGAATCTTGTAACTTAATCTTTAATCAATGATATGTAGTGGCAATATAATGGACTTTCATTGGATGTAAGTGTAAAATTAATTTGCACTCACAGTGTATGCCCCTTAATCTCCTAATGTTTATTTTCTCAATTTTTGGTCCTCTATTTTGGTATTTTTATTTTACGGGTTAAACATGGGGTGGAACTTTTGTTTCCTCCCAACGTAATACAGAGGTTTTGTTTCGATTGAGTTTTAGATATTTTATTTATAAAATTGCATGATTTCATTTTTCACTGAAGTCTGCCAAATTAACTCTTCATTTCATATATGAACTTGACAGAGACTCATCATGTGTTCAGTGAAAGGGAAAGAGACTGGGGTTTCACATCTTTCATGCCTTTAGTTGAGCTTCATAATCATTGCCTGGGGTTTATTGTGAACGATAGTTGTATTGTTGGTGCTGAGGTTTATGTTCACAATTCAAGCTATGAGAATGAAATGAATCGAACCGGCAACTTAATGGCTTCACTATTATCTAACTCCATAACATATGGTAGTCATATTAGTGGAGGACATATGGAAGTCCCAAGGTCTGAAGTCCAAGTGCCAAATCTGGAATCTCTTTCCGAATTTCCTATATTAGTTCGTACTGAGCCTACAAGAGACACTGACATGGAATTTTTCAAATACTCAATTGGTGAGCTTATGGATTTCATGGGTTTGGGGCAAGTGGAAAAATATTTTGTTCCACTACTAGAGGAAGCATGTTCTAAACATCCTTCACTTATTGAGTGTCAGCAGAGGAGAAGTCGCAGGTTTACTGAATGGGCTTTCACCGCTTTGGGCAGAGTTCTTTATTTCCTTAAGACTAGAAAGGCGAAAGACATGAATAAGCAAGCTTGCAAGGATCTTCAAATTTTATGGGAGGAACTTGAGATATTTGGATTTGATCTGGCTTGGCTAGAGCCTCATGTTCAATCTGCTTTAAGAATGAAAAGTTACGTGGAGAAAGCTGTGCAGATGGAGATGCTGAAGGAGAATGCGGAAGGTATAGCGTTGGAAATGGAGAGGCTTAAGACAAAATTGGCTACTCTTGAGTTAGATCTTAACATAGCAAGAGACTTGTTGATGGAAGAAGGCTTCAATGGGAGAGATTTGAATGTTGAACTAGGATATGGGATACCATAG
Protein sequence

>MS.gene23041.t1

MEDQQSRFDMFEKFSWKVEKFARVTSIEKVYSEPFVLCGYPWRILVYPYGNGNDTNNMSIYLDTMQSPNSYQGGTRDVTFRLVVFNQFDSTMSIKKQTHHVFSERERDWGFTSFMPLVELHNHCLGFIVNDSCIVGAEVYVHNSSYENEMNRTGNLMASLLSNSITYGSHISGGHMEVPRSEVQVPNLESLSEFPILVRTEPTRDTDMEFFKYSIGELMDFMGLGQVEKYFVPLLEEACSKHPSLIECQQRRSRRFTEWAFTALGRVLYFLKTRKAKDMNKQACKDLQILWEELEIFGFDLAWLEPHVQSALRMKSYVEKAVQMEMLKENAEGIALEMERLKTKLATLELDLNIARDLLMEEGFNGRDLNVELGYGIP