Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23042.t1 | GAU17571.1 | 67.9 | 368 | 99 | 4 | 1 | 349 | 1 | 368 | 1.50E-119 | 439.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23042.t1 | Q9FPT1 | 39.5 | 129 | 68 | 2 | 10 | 129 | 56 | 183 | 2.8e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23042.t1 | A0A2Z6LZ07 | 67.9 | 368 | 99 | 4 | 1 | 349 | 1 | 368 | 1.0e-119 | 439.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038333 | MS.gene23042 | PPI |
| MS.gene23042 | MS.gene057070 | PPI |
| MS.gene23042 | MS.gene030045 | PPI |
| MS.gene23042 | MS.gene038342 | PPI |
| MS.gene23042 | MS.gene017100 | PPI |
| MS.gene23042 | MS.gene030026 | PPI |
| MS.gene23042 | MS.gene038330 | PPI |
| MS.gene23042 | MS.gene017102 | PPI |
| MS.gene23042 | MS.gene038326 | PPI |
| MS.gene23042 | MS.gene017083 | PPI |
| MS.gene23042 | MS.gene038324 | PPI |
| MS.gene23042 | MS.gene038328 | PPI |
| MS.gene23042 | MS.gene030029 | PPI |
| MS.gene23042 | MS.gene030042 | PPI |
| MS.gene23042 | MS.gene057065 | PPI |
| MS.gene23042 | MS.gene038333 | PPI |
| MS.gene030033 | MS.gene23042 | PPI |
| MS.gene23042 | MS.gene030034 | PPI |
| MS.gene23042 | MS.gene017115 | PPI |
| MS.gene038336 | MS.gene23042 | PPI |
| MS.gene23042 | MS.gene057066 | PPI |
| MS.gene23042 | MS.gene038327 | PPI |
| MS.gene23042 | MS.gene057069 | PPI |
| MS.gene23042 | MS.gene017101 | PPI |
| MS.gene23042 | MS.gene017099 | PPI |
| MS.gene23042 | MS.gene030033 | PPI |
| MS.gene23042 | MS.gene030037 | PPI |
| MS.gene038323 | MS.gene23042 | PPI |
| MS.gene23042 | MS.gene057090 | PPI |
| MS.gene23042 | MS.gene038300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23042.t1 | MTR_1g042160 | 48.851 | 348 | 114 | 5 | 9 | 343 | 12 | 308 | 3.02e-109 | 321 |
| MS.gene23042.t1 | MTR_7g107200 | 47.090 | 378 | 165 | 9 | 1 | 345 | 1 | 376 | 1.02e-103 | 310 |
| MS.gene23042.t1 | MTR_7g107170 | 70.552 | 163 | 42 | 2 | 193 | 349 | 107 | 269 | 3.82e-76 | 235 |
| MS.gene23042.t1 | MTR_7g107170 | 58.621 | 87 | 36 | 0 | 248 | 334 | 1 | 87 | 8.40e-26 | 104 |
| MS.gene23042.t1 | MTR_7g107160 | 43.207 | 368 | 140 | 10 | 2 | 343 | 119 | 443 | 1.08e-72 | 232 |
| MS.gene23042.t1 | MTR_7g107160 | 47.191 | 89 | 47 | 0 | 79 | 167 | 24 | 112 | 6.60e-20 | 90.9 |
| MS.gene23042.t1 | MTR_8g011730 | 31.565 | 377 | 187 | 12 | 8 | 346 | 12 | 355 | 1.99e-47 | 164 |
| MS.gene23042.t1 | MTR_3g079840 | 40.769 | 130 | 65 | 5 | 10 | 129 | 56 | 183 | 1.75e-22 | 99.4 |
| MS.gene23042.t1 | MTR_3g079840 | 40.769 | 130 | 65 | 5 | 10 | 129 | 57 | 184 | 1.79e-22 | 99.4 |
| MS.gene23042.t1 | MTR_5g091450 | 35.200 | 125 | 72 | 1 | 10 | 125 | 33 | 157 | 9.25e-22 | 97.1 |
| MS.gene23042.t1 | MTR_5g086700 | 36.765 | 136 | 74 | 5 | 4 | 129 | 55 | 188 | 3.23e-20 | 92.4 |
| MS.gene23042.t1 | MTR_5g086700 | 36.765 | 136 | 74 | 5 | 4 | 129 | 55 | 188 | 3.45e-20 | 92.4 |
| MS.gene23042.t1 | MTR_2g034780 | 36.413 | 184 | 104 | 5 | 164 | 338 | 82 | 261 | 3.66e-19 | 86.3 |
| MS.gene23042.t1 | MTR_1g041240 | 37.037 | 135 | 74 | 5 | 4 | 129 | 52 | 184 | 4.14e-18 | 86.3 |
| MS.gene23042.t1 | MTR_1g041240 | 37.037 | 135 | 74 | 5 | 4 | 129 | 51 | 183 | 4.38e-18 | 86.3 |
| MS.gene23042.t1 | MTR_1g041240 | 37.037 | 135 | 74 | 5 | 4 | 129 | 53 | 185 | 4.54e-18 | 86.3 |
| MS.gene23042.t1 | MTR_5g091550 | 33.858 | 127 | 74 | 2 | 8 | 125 | 17 | 142 | 4.79e-15 | 76.3 |
| MS.gene23042.t1 | MTR_5g091550 | 33.858 | 127 | 74 | 2 | 8 | 125 | 17 | 142 | 5.06e-15 | 76.3 |
| MS.gene23042.t1 | MTR_5g091180 | 32.353 | 136 | 81 | 2 | 10 | 136 | 46 | 179 | 1.14e-13 | 72.4 |
| MS.gene23042.t1 | MTR_4g123750 | 26.994 | 163 | 97 | 4 | 11 | 155 | 20 | 178 | 1.47e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23042.t1 | AT5G06600 | 41.538 | 130 | 64 | 5 | 10 | 129 | 56 | 183 | 9.88e-21 | 94.4 |
| MS.gene23042.t1 | AT5G06600 | 41.538 | 130 | 64 | 5 | 10 | 129 | 55 | 182 | 1.01e-20 | 94.0 |
| MS.gene23042.t1 | AT3G11910 | 40.000 | 130 | 66 | 4 | 10 | 129 | 55 | 182 | 1.01e-20 | 94.0 |
| MS.gene23042.t1 | AT3G11910 | 40.000 | 130 | 66 | 4 | 10 | 129 | 55 | 182 | 1.01e-20 | 94.0 |
| MS.gene23042.t1 | AT3G11910 | 40.000 | 130 | 66 | 4 | 10 | 129 | 54 | 181 | 1.03e-20 | 94.0 |
| MS.gene23042.t1 | AT3G11910 | 40.000 | 130 | 66 | 4 | 10 | 129 | 54 | 181 | 1.03e-20 | 94.0 |
| MS.gene23042.t1 | AT5G06600 | 41.538 | 130 | 64 | 5 | 10 | 129 | 56 | 183 | 1.23e-20 | 94.0 |
| MS.gene23042.t1 | AT3G58370 | 32.847 | 137 | 78 | 4 | 1 | 125 | 1 | 135 | 1.03e-13 | 71.2 |
| MS.gene23042.t1 | AT2G32870 | 33.333 | 138 | 75 | 4 | 10 | 131 | 277 | 413 | 1.75e-12 | 68.6 |
| MS.gene23042.t1 | AT3G58410 | 31.707 | 123 | 77 | 2 | 9 | 125 | 7 | 128 | 4.51e-12 | 66.6 |
| MS.gene23042.t1 | AT3G58210 | 33.594 | 128 | 75 | 2 | 10 | 127 | 8 | 135 | 4.92e-12 | 66.6 |
| MS.gene23042.t1 | AT3G58360 | 29.231 | 130 | 82 | 3 | 9 | 129 | 7 | 135 | 6.30e-12 | 65.9 |
| MS.gene23042.t1 | AT3G58410 | 32.787 | 122 | 63 | 4 | 9 | 125 | 28 | 135 | 8.07e-12 | 65.9 |
| MS.gene23042.t1 | AT2G32880 | 31.206 | 141 | 81 | 4 | 7 | 131 | 175 | 315 | 9.81e-12 | 65.5 |
| MS.gene23042.t1 | AT3G44800 | 30.469 | 128 | 80 | 1 | 9 | 127 | 4 | 131 | 2.56e-11 | 64.7 |
| MS.gene23042.t1 | AT3G58440 | 34.586 | 133 | 71 | 4 | 9 | 130 | 9 | 136 | 5.49e-11 | 64.3 |
Find 78 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATTTAGATTCTGAATT+AGG | 0.193931 | 7.2:+7093823 | MS.gene23042:CDS |
| ACCCTCAATTGAAGTGCTTA+TGG | 0.241179 | 7.2:+7093402 | MS.gene23042:CDS |
| TTGGGACTTCCCCTTTAATA+TGG | 0.265959 | 7.2:-7093276 | None:intergenic |
| TTGAAATAGTTTCCAGATTT+GGG | 0.266501 | 7.2:-7093321 | None:intergenic |
| GTTGAAATAGTTTCCAGATT+TGG | 0.273996 | 7.2:-7093322 | None:intergenic |
| CCCCATGTTCAATTTGCTTT+AGG | 0.275944 | 7.2:+7093640 | MS.gene23042:CDS |
| TTTAGGTATCCACTTGAAAA+AGG | 0.281912 | 7.2:-7092859 | None:intergenic |
| GGGCCTTGAACTCCAGGATT+TGG | 0.290827 | 7.2:-7093301 | None:intergenic |
| CGACTACTTATCAATTTACT+TGG | 0.300586 | 7.2:+7092685 | MS.gene23042:CDS |
| GGCTGCTGCTGAGGTAAATA+TGG | 0.309872 | 7.2:+7093759 | MS.gene23042:CDS |
| AGAGAAGCTAAAGGCAAAAT+TGG | 0.311627 | 7.2:+7093738 | MS.gene23042:CDS |
| GAACTCCAGGATTTGGCCTT+GGG | 0.314486 | 7.2:-7093294 | None:intergenic |
| TCTGTATCAGTATGTTTAAT+AGG | 0.321275 | 7.2:-7093370 | None:intergenic |
| TGAACTCCAGGATTTGGCCT+TGG | 0.329525 | 7.2:-7093295 | None:intergenic |
| TTGTTGGACTTCCAAATGTT+AGG | 0.336368 | 7.2:-7093252 | None:intergenic |
| GATCTGGCTTTCTCCGCATT+GGG | 0.338647 | 7.2:+7093496 | MS.gene23042:CDS |
| GTAACTGTTTCCCTAACATT+TGG | 0.349345 | 7.2:+7093241 | MS.gene23042:CDS |
| AGTCCAACAAGCCATATTAA+AGG | 0.349672 | 7.2:+7093265 | MS.gene23042:CDS |
| CTGAATTAGGATGTGGGAGT+TGG | 0.368812 | 7.2:+7093836 | MS.gene23042:CDS |
| GTGAAGGATGCTTGTATTGT+TGG | 0.378080 | 7.2:+7093160 | MS.gene23042:CDS |
| TGGAGTTCAAGGCCCAAATC+TGG | 0.378140 | 7.2:+7093309 | MS.gene23042:CDS |
| GTCCAACAAGCCATATTAAA+GGG | 0.378676 | 7.2:+7093266 | MS.gene23042:CDS |
| AATTTAGATTTGATCTTACT+TGG | 0.378814 | 7.2:+7093611 | MS.gene23042:CDS |
| TCCCCTTTAATATGGCTTGT+TGG | 0.381394 | 7.2:-7093268 | None:intergenic |
| ATCAGTATGTTTAATAGGTT+CGG | 0.394828 | 7.2:-7093365 | None:intergenic |
| AGATTTGGGCCTTGAACTCC+AGG | 0.410070 | 7.2:-7093307 | None:intergenic |
| GAACTACAGGAAGTAAGATT+TGG | 0.411260 | 7.2:+7093439 | MS.gene23042:CDS |
| TGATCTGGCTTTCTCCGCAT+TGG | 0.415947 | 7.2:+7093495 | MS.gene23042:CDS |
| AAAGACTTGTTGAAAGCAAA+AGG | 0.417159 | 7.2:+7093790 | MS.gene23042:CDS |
| AAAATTTGTCTGTATCCAAC+GGG | 0.443718 | 7.2:+7092650 | MS.gene23042:CDS |
| TGTTGGACTTCCAAATGTTA+GGG | 0.444980 | 7.2:-7093251 | None:intergenic |
| GGATAGCCGCCTGCAACAAA+AGG | 0.446112 | 7.2:-7092512 | None:intergenic |
| TGAATTAGGATGTGGGAGTT+GGG | 0.447146 | 7.2:+7093837 | MS.gene23042:CDS |
| AGGCCAAATCCTGGAGTTCA+AGG | 0.455231 | 7.2:+7093298 | MS.gene23042:CDS |
| CCATGTAAATTTCTCAACAT+TGG | 0.459723 | 7.2:-7092441 | None:intergenic |
| ATGTGGGAGTTGGGAACCAT+AGG | 0.460618 | 7.2:+7093846 | MS.gene23042:CDS |
| CTACTTATCAATTTACTTGG+AGG | 0.462622 | 7.2:+7092688 | MS.gene23042:CDS |
| ATCCATAAGCACTTCAATTG+AGG | 0.469428 | 7.2:-7093404 | None:intergenic |
| TTAGATTCTGAATTAGGATG+TGG | 0.474050 | 7.2:+7093829 | MS.gene23042:CDS |
| GGCAAAATTGGCTGCTGCTG+AGG | 0.485315 | 7.2:+7093750 | MS.gene23042:CDS |
| GAAGTCCCAAGGCCAAATCC+TGG | 0.490222 | 7.2:+7093289 | MS.gene23042:CDS |
| AAATTGCGACTTCTCTTTGA+CGG | 0.494978 | 7.2:-7093469 | None:intergenic |
| ATCCACAAGATTTCTGTCAA+TGG | 0.496752 | 7.2:+7092883 | MS.gene23042:CDS |
| TTTCAGCAGTGTAGAACTAC+AGG | 0.498012 | 7.2:+7093426 | MS.gene23042:CDS |
| TCCATAAGCACTTCAATTGA+GGG | 0.498056 | 7.2:-7093403 | None:intergenic |
| AATTGCGACTTCTCTTTGAC+GGG | 0.499456 | 7.2:-7093468 | None:intergenic |
| CTTGAAGATCCTCACAAGCC+TGG | 0.504716 | 7.2:-7093567 | None:intergenic |
| TTGTTGCAGGCGGCTATCCA+TGG | 0.509193 | 7.2:+7092516 | MS.gene23042:CDS |
| TAAAAGAGGGTTTGTTGTGA+AGG | 0.513996 | 7.2:+7093144 | MS.gene23042:CDS |
| TACCATTGACAGAAATCTTG+TGG | 0.514312 | 7.2:-7092885 | None:intergenic |
| AAGCTTCATCATCCTAAAAG+AGG | 0.516459 | 7.2:+7093130 | MS.gene23042:CDS |
| GAAAATTTGTCTGTATCCAA+CGG | 0.522243 | 7.2:+7092649 | MS.gene23042:CDS |
| TGTTGAGAAATTTACATGGA+AGG | 0.525784 | 7.2:+7092445 | MS.gene23042:CDS |
| TGAAAAGCTGAAAGAGAATG+TGG | 0.531880 | 7.2:+7093696 | MS.gene23042:CDS |
| CATGGATGACCAGGCTTGTG+AGG | 0.532003 | 7.2:+7093558 | MS.gene23042:CDS |
| CCAATGTTGAGAAATTTACA+TGG | 0.532545 | 7.2:+7092441 | MS.gene23042:CDS |
| TAGATTCTGAATTAGGATGT+GGG | 0.536728 | 7.2:+7093830 | MS.gene23042:CDS |
| TTCCTAAAGCAAATTGAACA+TGG | 0.538306 | 7.2:-7093642 | None:intergenic |
| GAATGTGGTAGCTCTTGAGC+TGG | 0.541953 | 7.2:+7093711 | MS.gene23042:CDS |
| AAATCTGGAAACTATTTCAA+CGG | 0.552571 | 7.2:+7093324 | MS.gene23042:CDS |
| AATGCTAGTGGGAGTAGTTG+CGG | 0.557318 | 7.2:+7093082 | MS.gene23042:CDS |
| TCCTAAAGCAAATTGAACAT+GGG | 0.566420 | 7.2:-7093641 | None:intergenic |
| TGTGGGAGTTGGGAACCATA+GGG | 0.576319 | 7.2:+7093847 | MS.gene23042:CDS |
| AGTGAAAGACATGGATGACC+AGG | 0.581108 | 7.2:+7093549 | MS.gene23042:CDS |
| AGCTTCATCATCCTAAAAGA+GGG | 0.592122 | 7.2:+7093131 | MS.gene23042:CDS |
| ATATTAAAGGGGAAGTCCCA+AGG | 0.606798 | 7.2:+7093278 | MS.gene23042:CDS |
| CCTAAAGCAAATTGAACATG+GGG | 0.611944 | 7.2:-7093640 | None:intergenic |
| GATTGTGAGTTCAATGCTAG+TGG | 0.613843 | 7.2:+7093070 | MS.gene23042:CDS |
| ATCTGGCTTTCTCCGCATTG+GGG | 0.619168 | 7.2:+7093497 | MS.gene23042:CDS |
| TCCAACAAGCCATATTAAAG+GGG | 0.626170 | 7.2:+7093267 | MS.gene23042:CDS |
| GCTGGAAACAGAGAAGCTAA+AGG | 0.633198 | 7.2:+7093729 | MS.gene23042:CDS |
| GACTAGAAAAGTGAAAGACA+TGG | 0.661873 | 7.2:+7093540 | MS.gene23042:CDS |
| AGGCTCAGAGTAAACCTCGT+CGG | 0.663038 | 7.2:-7092492 | None:intergenic |
| ATTGTGAGTTCAATGCTAGT+GGG | 0.670016 | 7.2:+7093071 | MS.gene23042:CDS |
| TTCTCGCTTGAAAACCGACG+AGG | 0.674315 | 7.2:+7092478 | MS.gene23042:CDS |
| AATTTGTCTGTATCCAACGG+GGG | 0.722444 | 7.2:+7092652 | MS.gene23042:CDS |
| ATAAAGAACTCTCCCCAATG+CGG | 0.724243 | 7.2:-7093509 | None:intergenic |
| AAATTTGTCTGTATCCAACG+GGG | 0.752195 | 7.2:+7092651 | MS.gene23042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAAAGTTTATGTCA+AGG | - | chr7.2:7092966-7092985 | None:intergenic | 20.0% |
| !! | AATTTAGATTTGATCTTACT+TGG | + | chr7.2:7093611-7093630 | MS.gene23042:CDS | 20.0% |
| !! | TACGACAAGTTAAAATTTAT+TGG | + | chr7.2:7092561-7092580 | MS.gene23042:intron | 20.0% |
| !!! | TACAGATTTTAGTACTTTAT+AGG | + | chr7.2:7092934-7092953 | MS.gene23042:intron | 20.0% |
| ! | AAATCTGGAAACTATTTCAA+CGG | + | chr7.2:7093324-7093343 | MS.gene23042:CDS | 25.0% |
| ! | AGAGATTTAGATTCTGAATT+AGG | + | chr7.2:7093823-7093842 | MS.gene23042:CDS | 25.0% |
| ! | ATCAGTATGTTTAATAGGTT+CGG | - | chr7.2:7093368-7093387 | None:intergenic | 25.0% |
| ! | GAATAAAAGTAACATCTCAA+TGG | - | chr7.2:7092997-7093016 | None:intergenic | 25.0% |
| ! | TCTGTATCAGTATGTTTAAT+AGG | - | chr7.2:7093373-7093392 | None:intergenic | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | - | chr7.2:7092536-7092555 | None:intergenic | 25.0% |
| ! | TTGAAATAGTTTCCAGATTT+GGG | - | chr7.2:7093324-7093343 | None:intergenic | 25.0% |
| ! | TTGTAAACTTAACTGCTAAT+AGG | + | chr7.2:7092833-7092852 | MS.gene23042:intron | 25.0% |
| AAAACTGCTAATATGTCTGA+GGG | + | chr7.2:7092716-7092735 | MS.gene23042:intron | 30.0% | |
| AAAATTTGTCTGTATCCAAC+GGG | + | chr7.2:7092650-7092669 | MS.gene23042:CDS | 30.0% | |
| CAGTTAAGTTTACAATGAGA+AGG | - | chr7.2:7092828-7092847 | None:intergenic | 30.0% | |
| CCAATGTTGAGAAATTTACA+TGG | + | chr7.2:7092441-7092460 | MS.gene23042:CDS | 30.0% | |
| CCATGTAAATTTCTCAACAT+TGG | - | chr7.2:7092444-7092463 | None:intergenic | 30.0% | |
| CGACTACTTATCAATTTACT+TGG | + | chr7.2:7092685-7092704 | MS.gene23042:CDS | 30.0% | |
| CTACTTATCAATTTACTTGG+AGG | + | chr7.2:7092688-7092707 | MS.gene23042:CDS | 30.0% | |
| GAAAATTTGTCTGTATCCAA+CGG | + | chr7.2:7092649-7092668 | MS.gene23042:CDS | 30.0% | |
| GTTGAAATAGTTTCCAGATT+TGG | - | chr7.2:7093325-7093344 | None:intergenic | 30.0% | |
| TAGATTCTGAATTAGGATGT+GGG | + | chr7.2:7093830-7093849 | MS.gene23042:CDS | 30.0% | |
| TCCTAAAGCAAATTGAACAT+GGG | - | chr7.2:7093644-7093663 | None:intergenic | 30.0% | |
| TGTATGAATTTGCCAGATTT+CGG | + | chr7.2:7093046-7093065 | MS.gene23042:intron | 30.0% | |
| TGTTGAGAAATTTACATGGA+AGG | + | chr7.2:7092445-7092464 | MS.gene23042:CDS | 30.0% | |
| TTAGATTCTGAATTAGGATG+TGG | + | chr7.2:7093829-7093848 | MS.gene23042:CDS | 30.0% | |
| TTCCTAAAGCAAATTGAACA+TGG | - | chr7.2:7093645-7093664 | None:intergenic | 30.0% | |
| TTTAGGTATCCACTTGAAAA+AGG | - | chr7.2:7092862-7092881 | None:intergenic | 30.0% | |
| ! | CAGAAATCTTGTGGATTTTT+AGG | - | chr7.2:7092879-7092898 | None:intergenic | 30.0% |
| !! | AAAGACTTGTTGAAAGCAAA+AGG | + | chr7.2:7093790-7093809 | MS.gene23042:CDS | 30.0% |
| !! | AAGTCGCAATTTTAATGATC+TGG | + | chr7.2:7093480-7093499 | MS.gene23042:CDS | 30.0% |
| !! | ATATGCTATGGTTTTGCTTT+AGG | + | chr7.2:7092627-7092646 | MS.gene23042:intron | 30.0% |
| !!! | TAGTGTGTTTTGATATGCTA+TGG | + | chr7.2:7092615-7092634 | MS.gene23042:intron | 30.0% |
| AAATTGCGACTTCTCTTTGA+CGG | - | chr7.2:7093472-7093491 | None:intergenic | 35.0% | |
| AAATTTGTCTGTATCCAACG+GGG | + | chr7.2:7092651-7092670 | MS.gene23042:CDS | 35.0% | |
| AAGCTTCATCATCCTAAAAG+AGG | + | chr7.2:7093130-7093149 | MS.gene23042:CDS | 35.0% | |
| ACCAACAAGACAATTACAGA+AGG | + | chr7.2:7092788-7092807 | MS.gene23042:intron | 35.0% | |
| ACCTTCTGTAATTGTCTTGT+TGG | - | chr7.2:7092792-7092811 | None:intergenic | 35.0% | |
| AGAGAAGCTAAAGGCAAAAT+TGG | + | chr7.2:7093738-7093757 | MS.gene23042:CDS | 35.0% | |
| AGCTTCATCATCCTAAAAGA+GGG | + | chr7.2:7093131-7093150 | MS.gene23042:CDS | 35.0% | |
| AGTCCAACAAGCCATATTAA+AGG | + | chr7.2:7093265-7093284 | MS.gene23042:CDS | 35.0% | |
| ATCCACAAGATTTCTGTCAA+TGG | + | chr7.2:7092883-7092902 | MS.gene23042:CDS | 35.0% | |
| ATCCATAAGCACTTCAATTG+AGG | - | chr7.2:7093407-7093426 | None:intergenic | 35.0% | |
| ATTGTGAGTTCAATGCTAGT+GGG | + | chr7.2:7093071-7093090 | MS.gene23042:CDS | 35.0% | |
| CAAGATTTCTGTCAATGGTA+TGG | + | chr7.2:7092888-7092907 | MS.gene23042:intron | 35.0% | |
| CCTAAAGCAAATTGAACATG+GGG | - | chr7.2:7093643-7093662 | None:intergenic | 35.0% | |
| GAAAACTGCTAATATGTCTG+AGG | + | chr7.2:7092715-7092734 | MS.gene23042:intron | 35.0% | |
| GAACTACAGGAAGTAAGATT+TGG | + | chr7.2:7093439-7093458 | MS.gene23042:CDS | 35.0% | |
| GACTAGAAAAGTGAAAGACA+TGG | + | chr7.2:7093540-7093559 | MS.gene23042:CDS | 35.0% | |
| GTAACTGTTTCCCTAACATT+TGG | + | chr7.2:7093241-7093260 | MS.gene23042:CDS | 35.0% | |
| GTCCAACAAGCCATATTAAA+GGG | + | chr7.2:7093266-7093285 | MS.gene23042:CDS | 35.0% | |
| TACCATTGACAGAAATCTTG+TGG | - | chr7.2:7092888-7092907 | None:intergenic | 35.0% | |
| TCCAACAAGCCATATTAAAG+GGG | + | chr7.2:7093267-7093286 | MS.gene23042:CDS | 35.0% | |
| TCCATAAGCACTTCAATTGA+GGG | - | chr7.2:7093406-7093425 | None:intergenic | 35.0% | |
| TGAAAAGCTGAAAGAGAATG+TGG | + | chr7.2:7093696-7093715 | MS.gene23042:CDS | 35.0% | |
| TGTTGGACTTCCAAATGTTA+GGG | - | chr7.2:7093254-7093273 | None:intergenic | 35.0% | |
| TTGTTGGACTTCCAAATGTT+AGG | - | chr7.2:7093255-7093274 | None:intergenic | 35.0% | |
| ! | TTCACAACAAACCCTCTTTT+AGG | - | chr7.2:7093145-7093164 | None:intergenic | 35.0% |
| !! | GGATCTTCAAGTTTTATGGA+AGG | + | chr7.2:7093579-7093598 | MS.gene23042:CDS | 35.0% |
| !! | GTGAGGATCTTCAAGTTTTA+TGG | + | chr7.2:7093575-7093594 | MS.gene23042:CDS | 35.0% |
| !! | TAAAAGAGGGTTTGTTGTGA+AGG | + | chr7.2:7093144-7093163 | MS.gene23042:CDS | 35.0% |
| !!! | AATAGGCTTCCTTTTTCAAG+TGG | + | chr7.2:7092850-7092869 | MS.gene23042:intron | 35.0% |
| !!! | CTTTCACTTTTCTAGTCTTG+AGG | - | chr7.2:7093537-7093556 | None:intergenic | 35.0% |
| AACTCACAATCACCGAAATC+TGG | - | chr7.2:7093061-7093080 | None:intergenic | 40.0% | |
| AATTGCGACTTCTCTTTGAC+GGG | - | chr7.2:7093471-7093490 | None:intergenic | 40.0% | |
| AATTTGTCTGTATCCAACGG+GGG | + | chr7.2:7092652-7092671 | MS.gene23042:CDS | 40.0% | |
| ATAAAGAACTCTCCCCAATG+CGG | - | chr7.2:7093512-7093531 | None:intergenic | 40.0% | |
| ATATTAAAGGGGAAGTCCCA+AGG | + | chr7.2:7093278-7093297 | MS.gene23042:CDS | 40.0% | |
| GATTGTGAGTTCAATGCTAG+TGG | + | chr7.2:7093070-7093089 | MS.gene23042:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | + | chr7.2:7093160-7093179 | MS.gene23042:CDS | 40.0% | |
| TGAATTAGGATGTGGGAGTT+GGG | + | chr7.2:7093837-7093856 | MS.gene23042:CDS | 40.0% | |
| TTGGGACTTCCCCTTTAATA+TGG | - | chr7.2:7093279-7093298 | None:intergenic | 40.0% | |
| TTTCAGCAGTGTAGAACTAC+AGG | + | chr7.2:7093426-7093445 | MS.gene23042:CDS | 40.0% | |
| ! | ACCCTCAATTGAAGTGCTTA+TGG | + | chr7.2:7093402-7093421 | MS.gene23042:CDS | 40.0% |
| ! | CCCCATGTTCAATTTGCTTT+AGG | + | chr7.2:7093640-7093659 | MS.gene23042:CDS | 40.0% |
| ! | TCCCCTTTAATATGGCTTGT+TGG | - | chr7.2:7093271-7093290 | None:intergenic | 40.0% |
| AATGCTAGTGGGAGTAGTTG+CGG | + | chr7.2:7093082-7093101 | MS.gene23042:CDS | 45.0% | |
| AGTGAAAGACATGGATGACC+AGG | + | chr7.2:7093549-7093568 | MS.gene23042:CDS | 45.0% | |
| CTGAATTAGGATGTGGGAGT+TGG | + | chr7.2:7093836-7093855 | MS.gene23042:CDS | 45.0% | |
| GCTGGAAACAGAGAAGCTAA+AGG | + | chr7.2:7093729-7093748 | MS.gene23042:CDS | 45.0% | |
| ! | TACTCTGAGCCTTTTGTTGC+AGG | + | chr7.2:7092503-7092522 | MS.gene23042:CDS | 45.0% |
| AGATTTGGGCCTTGAACTCC+AGG | - | chr7.2:7093310-7093329 | None:intergenic | 50.0% | |
| AGGCCAAATCCTGGAGTTCA+AGG | + | chr7.2:7093298-7093317 | MS.gene23042:CDS | 50.0% | |
| AGGCTCAGAGTAAACCTCGT+CGG | - | chr7.2:7092495-7092514 | None:intergenic | 50.0% | |
| CTTGAAGATCCTCACAAGCC+TGG | - | chr7.2:7093570-7093589 | None:intergenic | 50.0% | |
| GAATGTGGTAGCTCTTGAGC+TGG | + | chr7.2:7093711-7093730 | MS.gene23042:CDS | 50.0% | |
| GGCTGCTGCTGAGGTAAATA+TGG | + | chr7.2:7093759-7093778 | MS.gene23042:CDS | 50.0% | |
| TGAACTCCAGGATTTGGCCT+TGG | - | chr7.2:7093298-7093317 | None:intergenic | 50.0% | |
| TGGAGTTCAAGGCCCAAATC+TGG | + | chr7.2:7093309-7093328 | MS.gene23042:CDS | 50.0% | |
| TTCTCGCTTGAAAACCGACG+AGG | + | chr7.2:7092478-7092497 | MS.gene23042:CDS | 50.0% | |
| ! | GAACTCCAGGATTTGGCCTT+GGG | - | chr7.2:7093297-7093316 | None:intergenic | 50.0% |
| ! | TCTGAGCCTTTTGTTGCAGG+CGG | + | chr7.2:7092506-7092525 | MS.gene23042:CDS | 50.0% |
| !! | ATCTGGCTTTCTCCGCATTG+GGG | + | chr7.2:7093497-7093516 | MS.gene23042:CDS | 50.0% |
| !! | GATCTGGCTTTCTCCGCATT+GGG | + | chr7.2:7093496-7093515 | MS.gene23042:CDS | 50.0% |
| !! | TGATCTGGCTTTCTCCGCAT+TGG | + | chr7.2:7093495-7093514 | MS.gene23042:CDS | 50.0% |
| CATGGATGACCAGGCTTGTG+AGG | + | chr7.2:7093558-7093577 | MS.gene23042:CDS | 55.0% | |
| GAAGTCCCAAGGCCAAATCC+TGG | + | chr7.2:7093289-7093308 | MS.gene23042:CDS | 55.0% | |
| GGATAGCCGCCTGCAACAAA+AGG | - | chr7.2:7092515-7092534 | None:intergenic | 55.0% | |
| GGCAAAATTGGCTGCTGCTG+AGG | + | chr7.2:7093750-7093769 | MS.gene23042:CDS | 55.0% | |
| GGGCCTTGAACTCCAGGATT+TGG | - | chr7.2:7093304-7093323 | None:intergenic | 55.0% | |
| TGTCTGTATCCAACGGGGGA+TGG | + | chr7.2:7092656-7092675 | MS.gene23042:CDS | 55.0% | |
| TTGTTGCAGGCGGCTATCCA+TGG | + | chr7.2:7092516-7092535 | MS.gene23042:CDS | 55.0% | |
| TCGTCTACTCCATCCCCCGT+TGG | - | chr7.2:7092668-7092687 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7092425 | 7093867 | 7092425 | ID=MS.gene23042 |
| chr7.2 | mRNA | 7092425 | 7093867 | 7092425 | ID=MS.gene23042.t1;Parent=MS.gene23042 |
| chr7.2 | exon | 7092425 | 7092537 | 7092425 | ID=MS.gene23042.t1.exon1;Parent=MS.gene23042.t1 |
| chr7.2 | CDS | 7092425 | 7092537 | 7092425 | ID=cds.MS.gene23042.t1;Parent=MS.gene23042.t1 |
| chr7.2 | exon | 7092649 | 7092729 | 7092649 | ID=MS.gene23042.t1.exon2;Parent=MS.gene23042.t1 |
| chr7.2 | CDS | 7092649 | 7092729 | 7092649 | ID=cds.MS.gene23042.t1;Parent=MS.gene23042.t1 |
| chr7.2 | exon | 7092855 | 7092904 | 7092855 | ID=MS.gene23042.t1.exon3;Parent=MS.gene23042.t1 |
| chr7.2 | CDS | 7092855 | 7092904 | 7092855 | ID=cds.MS.gene23042.t1;Parent=MS.gene23042.t1 |
| chr7.2 | exon | 7093062 | 7093867 | 7093062 | ID=MS.gene23042.t1.exon4;Parent=MS.gene23042.t1 |
| chr7.2 | CDS | 7093062 | 7093867 | 7093062 | ID=cds.MS.gene23042.t1;Parent=MS.gene23042.t1 |
| Gene Sequence |
| Protein sequence |
