AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23044.t1 MTR_1g042160 55.460 348 114 4 1 347 1 308 2.06e-132 380
MS.gene23044.t1 MTR_7g107200 50.000 376 161 6 1 349 1 376 2.89e-124 362
MS.gene23044.t1 MTR_7g107160 46.133 362 142 10 2 347 119 443 4.97e-87 270
MS.gene23044.t1 MTR_7g107160 60.952 105 41 0 68 172 1 105 3.29e-36 136
MS.gene23044.t1 MTR_7g107170 73.620 163 41 1 193 353 107 269 3.46e-81 248
MS.gene23044.t1 MTR_7g107170 60.920 87 34 0 252 338 1 87 8.81e-26 104
MS.gene23044.t1 MTR_8g011730 36.438 365 186 11 11 350 12 355 4.06e-65 210
MS.gene23044.t1 MTR_3g079840 45.070 142 77 1 1 142 44 184 8.70e-39 147
MS.gene23044.t1 MTR_3g079840 45.070 142 77 1 1 142 45 185 8.78e-39 147
MS.gene23044.t1 MTR_5g091450 44.776 134 73 1 13 146 33 165 6.37e-38 144
MS.gene23044.t1 MTR_5g086700 46.154 130 69 1 13 142 61 189 4.86e-37 142
MS.gene23044.t1 MTR_5g086700 46.154 130 69 1 13 142 61 189 5.34e-37 142
MS.gene23044.t1 MTR_1g041240 44.853 136 73 2 6 141 51 184 1.17e-35 138
MS.gene23044.t1 MTR_1g041240 44.853 136 73 2 6 141 52 185 1.17e-35 138
MS.gene23044.t1 MTR_1g041240 44.853 136 73 2 6 141 50 183 1.20e-35 138
MS.gene23044.t1 MTR_5g091180 36.957 138 87 0 1 138 34 171 2.65e-26 110
MS.gene23044.t1 MTR_5g091550 38.583 127 77 1 12 138 18 143 2.36e-24 103
MS.gene23044.t1 MTR_5g091550 38.583 127 77 1 12 138 18 143 2.80e-24 103
MS.gene23044.t1 MTR_1g044450 35.075 134 82 3 9 141 61 190 3.67e-19 89.4
MS.gene23044.t1 MTR_4g123750 32.168 143 88 4 14 147 20 162 2.57e-18 84.7
MS.gene23044.t1 MTR_4g123750 29.286 140 96 2 6 143 169 307 4.14e-12 66.6
MS.gene23044.t1 MTR_1g073790 33.582 134 84 3 9 141 58 187 6.49e-18 85.9
MS.gene23044.t1 MTR_1g073800 32.090 134 88 3 9 141 45 176 1.18e-17 84.0
MS.gene23044.t1 MTR_3g106700 33.333 141 84 2 13 143 406 546 1.24e-17 85.1
MS.gene23044.t1 MTR_3g106700 26.190 126 89 3 16 137 71 196 4.17e-11 65.1
MS.gene23044.t1 MTR_2g034780 39.837 123 69 2 202 322 122 241 3.13e-17 80.9
MS.gene23044.t1 MTR_8g006190 34.783 115 69 2 31 139 10 124 5.07e-16 79.3
MS.gene23044.t1 MTR_8g006190 33.654 104 63 2 42 139 13 116 6.38e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23044.t1 AT5G06600 50.000 142 70 1 1 142 44 184 8.32e-41 153
MS.gene23044.t1 AT5G06600 50.000 142 70 1 1 142 43 183 1.07e-40 153
MS.gene23044.t1 AT5G06600 50.000 142 70 1 1 142 44 184 1.07e-40 153
MS.gene23044.t1 AT3G11910 50.769 130 63 1 13 142 54 182 7.46e-39 147
MS.gene23044.t1 AT3G11910 50.769 130 63 1 13 142 54 182 7.46e-39 147
MS.gene23044.t1 AT3G11910 50.769 130 63 1 13 142 55 183 7.60e-39 147
MS.gene23044.t1 AT3G11910 50.769 130 63 1 13 142 55 183 7.60e-39 147
MS.gene23044.t1 AT3G58270 40.146 137 81 1 6 142 1 136 2.67e-26 107
MS.gene23044.t1 AT3G58270 40.146 137 81 1 6 142 1 136 2.67e-26 107
MS.gene23044.t1 AT3G58270 40.146 137 81 1 6 142 1 136 2.67e-26 107
MS.gene23044.t1 AT3G58250 32.749 171 109 3 12 176 9 179 2.62e-24 101
MS.gene23044.t1 AT3G58340 25.449 334 212 8 6 321 1 315 5.52e-24 100
MS.gene23044.t1 AT3G58370 35.811 148 93 1 8 153 4 151 6.84e-24 100
MS.gene23044.t1 AT3G58340 34.307 137 89 1 6 142 1 136 4.38e-23 98.2
MS.gene23044.t1 AT3G58410 35.606 132 81 2 6 137 1 128 6.25e-22 95.1
MS.gene23044.t1 AT3G58360 32.432 148 99 1 6 153 1 147 1.04e-21 94.0
MS.gene23044.t1 AT3G58210 30.723 166 114 1 6 170 1 166 1.79e-21 94.0
MS.gene23044.t1 AT3G27040 31.429 140 96 0 12 151 8 147 6.69e-20 88.6
MS.gene23044.t1 AT3G58260 34.043 141 90 2 6 143 1 141 7.42e-20 89.4
MS.gene23044.t1 AT3G58350 30.882 136 92 1 6 139 1 136 1.47e-19 88.2
MS.gene23044.t1 AT3G58350 30.882 136 92 1 6 139 1 136 1.47e-19 88.2
MS.gene23044.t1 AT3G44800 32.168 143 97 0 11 153 3 145 9.97e-19 86.3
MS.gene23044.t1 AT3G58200 33.058 121 81 0 6 126 1 121 2.54e-18 85.1
MS.gene23044.t1 AT5G52330 34.400 125 78 2 9 133 16 136 7.42e-18 84.3
MS.gene23044.t1 AT5G52330 34.400 125 78 2 9 133 16 136 7.42e-18 84.3
MS.gene23044.t1 AT5G52330 34.400 125 78 2 9 133 16 136 7.42e-18 84.3
MS.gene23044.t1 AT5G43560 35.075 134 82 3 9 141 66 195 1.71e-17 84.3
MS.gene23044.t1 AT5G43560 35.075 134 82 3 9 141 66 195 1.71e-17 84.3
MS.gene23044.t1 AT2G05420 31.973 147 92 2 14 153 10 155 1.84e-17 82.0
MS.gene23044.t1 AT3G58410 33.333 132 70 2 6 137 22 135 2.69e-17 82.0
MS.gene23044.t1 AT2G05410 30.872 149 101 2 6 153 1 148 4.25e-17 81.3
MS.gene23044.t1 AT1G31390 33.871 124 80 1 6 127 1 124 6.30e-17 80.1
MS.gene23044.t1 AT3G58220 26.286 175 121 4 14 184 13 183 3.60e-16 78.6
MS.gene23044.t1 AT3G44790 34.848 132 82 1 11 142 3 130 3.90e-16 78.6
MS.gene23044.t1 AT3G58290 29.932 147 92 3 12 148 10 155 4.93e-16 77.8
MS.gene23044.t1 AT1G04300 33.582 134 84 3 9 141 65 194 5.29e-16 80.1
MS.gene23044.t1 AT1G31400 28.947 152 103 2 6 155 1 149 5.68e-16 77.4
MS.gene23044.t1 AT2G25320 31.788 151 92 3 13 153 405 554 9.19e-16 79.3
MS.gene23044.t1 AT2G25320 27.737 137 88 3 16 141 76 212 9.63e-13 70.1
MS.gene23044.t1 AT2G25320 31.788 151 92 3 13 153 404 553 9.27e-16 79.3
MS.gene23044.t1 AT2G25320 27.737 137 88 3 16 141 75 211 9.80e-13 70.1
MS.gene23044.t1 AT3G17380 31.298 131 84 3 17 141 25 155 1.09e-15 77.0
MS.gene23044.t1 AT3G17380 31.429 140 93 2 6 143 168 306 4.47e-15 75.5
MS.gene23044.t1 AT2G25320 31.788 151 92 3 13 153 405 554 1.14e-15 79.0
MS.gene23044.t1 AT2G25320 27.737 137 88 3 16 141 76 212 1.10e-12 69.7
MS.gene23044.t1 AT5G26260 31.081 148 96 4 4 145 53 200 1.66e-15 77.0
MS.gene23044.t1 AT2G01790 29.496 139 96 1 16 152 11 149 6.73e-15 74.3
MS.gene23044.t1 AT3G58220 29.104 134 87 4 13 142 12 141 9.24e-15 75.5
MS.gene23044.t1 AT3G58220 29.323 133 86 4 14 142 13 141 9.84e-15 74.7
MS.gene23044.t1 AT2G32870 35.507 138 81 4 13 143 277 413 1.20e-14 75.1
MS.gene23044.t1 AT3G58220 29.104 134 87 4 13 142 12 141 1.47e-14 74.3
MS.gene23044.t1 AT3G58220 29.323 133 86 4 14 142 13 141 1.65e-14 73.2
MS.gene23044.t1 AT4G09780 32.117 137 84 2 13 140 214 350 4.41e-14 73.2
MS.gene23044.t1 AT2G25330 32.680 153 93 3 13 155 359 511 1.14e-13 72.8
MS.gene23044.t1 AT2G25330 26.562 128 90 3 16 139 50 177 8.95e-12 66.6
MS.gene23044.t1 AT1G04300 31.690 142 84 4 9 141 65 202 1.20e-13 72.8
MS.gene23044.t1 AT3G58440 34.375 128 81 3 12 139 9 133 1.53e-13 72.0
MS.gene23044.t1 AT3G58240 22.393 326 225 6 6 321 1 308 2.04e-13 70.5
MS.gene23044.t1 AT4G09780 31.757 148 81 4 13 140 214 361 1.38e-12 68.9
MS.gene23044.t1 AT5G26320 30.172 116 75 2 31 140 81 196 3.13e-12 67.4
MS.gene23044.t1 AT4G09770 31.967 122 82 1 13 133 160 281 4.47e-12 66.6
MS.gene23044.t1 AT4G09770 31.967 122 82 1 13 133 160 281 4.47e-12 66.6
MS.gene23044.t1 AT3G46190 30.882 136 87 3 14 149 183 311 6.90e-12 65.9
MS.gene23044.t1 AT4G09770 31.967 122 82 1 13 133 186 307 7.56e-12 65.9
MS.gene23044.t1 AT2G32880 33.094 139 84 4 13 143 178 315 7.80e-12 65.9
MS.gene23044.t1 AT3G46190 29.870 154 93 4 4 149 145 291 9.57e-12 65.5
MS.gene23044.t1 AT2G42460 29.078 141 97 2 6 146 2 139 2.92e-11 63.9
MS.gene23044.t1 AT3G29580 34.188 117 73 2 13 127 8 122 7.45e-11 62.8

Find 64 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAATAGTTTCCATATT+TGG 0.110416 7.2:-7104079 None:intergenic
GCAAACTGCCAATATGTTTA+AGG 0.125935 7.2:+7101905 MS.gene23044:CDS
CAACAGTTTATCAATATATT+TGG 0.160836 7.2:+7101875 MS.gene23044:CDS
ATAGATTTAAATTCTGAATT+AGG 0.189765 7.2:+7104583 MS.gene23044:CDS
GTGAAATAGTTTCCATATTT+GGG 0.271306 7.2:-7104078 None:intergenic
GGAATTGGAAGTCCCAAATA+TGG 0.305242 7.2:+7104066 MS.gene23044:CDS
CAGTAGTGTAGAACAATTAG+AGG 0.327754 7.2:+7104177 MS.gene23044:CDS
TTGTTTACATCGTTCCCTTT+TGG 0.328528 7.2:-7101855 None:intergenic
TCAATGCAAGTCAGAAGAAC+TGG 0.356803 7.2:+7103864 MS.gene23044:CDS
GAGCTAAACTCGTGAAAGTA+TGG 0.363455 7.2:-7103892 None:intergenic
TCAAAATGTGCATATGGAAT+TGG 0.368049 7.2:+7104051 MS.gene23044:CDS
GATTTGGCATTTGCTGCATT+AGG 0.377780 7.2:+7104256 MS.gene23044:CDS
GTGAAGGATGTTTGTATTGT+TGG 0.378900 7.2:+7103944 MS.gene23044:CDS
GCTCCATCCCTTAAACATAT+TGG 0.387375 7.2:-7101913 None:intergenic
ATTTGGCATTTGCTGCATTA+GGG 0.390923 7.2:+7104257 MS.gene23044:CDS
AGCTGAGGTTTCAGTTTGTA+AGG 0.397187 7.2:+7103967 MS.gene23044:CDS
CCTCATGTTCAATCTGCATT+AGG 0.400815 7.2:+7104400 MS.gene23044:CDS
TATGAATGACCAAGCTTGTA+AGG 0.406254 7.2:+7104318 MS.gene23044:CDS
GTAATGACGCGACTCTTCTT+CGG 0.409853 7.2:-7104232 None:intergenic
TTCACGATAAAACCGTTGTT+AGG 0.413903 7.2:-7103926 None:intergenic
CTGAATTAGGATGTGGGAGT+TGG 0.415524 7.2:+7104596 MS.gene23044:CDS
CAAACTGCCAATATGTTTAA+GGG 0.416894 7.2:+7101906 MS.gene23044:CDS
GAGTCGCGTCATTACCGATT+TGG 0.417813 7.2:+7104240 MS.gene23044:CDS
TCTGACTTGCATTGAGCTCA+TGG 0.419738 7.2:-7103856 None:intergenic
TGAAAGTCAAAATGTGCATA+TGG 0.420616 7.2:+7104045 MS.gene23044:CDS
AGGATTCTTATGTTTCCAAA+AGG 0.435968 7.2:+7101840 MS.gene23044:CDS
AGACACTTGTTGAAAGCAAA+AGG 0.441122 7.2:+7104550 MS.gene23044:CDS
CTTGAAGATCCTTACAAGCT+TGG 0.447089 7.2:-7104327 None:intergenic
TTTGGAGGTTGAAAAGTTGA+AGG 0.458143 7.2:+7104447 MS.gene23044:CDS
GTGCAAACTAGTGTAGAAAC+TGG 0.459502 7.2:-7104100 None:intergenic
GGATATCCGCCGAGGACAAA+AGG 0.466392 7.2:-7101684 None:intergenic
TTAAATTCTGAATTAGGATG+TGG 0.474050 7.2:+7104589 MS.gene23044:CDS
TAATGCAGCAAATGCCAAAT+CGG 0.482815 7.2:-7104254 None:intergenic
AGGGTTGTTCTCACCCTCAA+TGG 0.484578 7.2:+7104138 MS.gene23044:CDS
TTATGTGGAGAAAGCTTTGG+AGG 0.493062 7.2:+7104432 MS.gene23044:CDS
AATTAGGATGTGGGAGTTGG+AGG 0.499887 7.2:+7104599 MS.gene23044:CDS
AAGTTATGTGGAGAAAGCTT+TGG 0.500157 7.2:+7104429 MS.gene23044:CDS
GGCATTTGCTGCATTAGGGA+GGG 0.501307 7.2:+7104261 MS.gene23044:CDS
GGATTCTTATGTTTCCAAAA+GGG 0.519973 7.2:+7101841 MS.gene23044:CDS
TAAATTCTGAATTAGGATGT+GGG 0.522500 7.2:+7104590 MS.gene23044:CDS
TTGTCCTCGGCGGATATCCA+TGG 0.523925 7.2:+7101688 MS.gene23044:CDS
AATTTAGATTTGATGTCACT+TGG 0.525067 7.2:+7104371 MS.gene23044:CDS
TCTTGAAACGGAGAGGCTAA+AGG 0.526186 7.2:+7104489 MS.gene23044:CDS
AATGGAGCATCAAGAAATGA+AGG 0.527699 7.2:+7101587 None:intergenic
TGCACTAAACCTACTGACAC+AGG 0.533031 7.2:+7104118 MS.gene23044:CDS
ACCTCGTGTGATTGTCATGT+TGG 0.536099 7.2:-7101979 None:intergenic
TGGCATTTGCTGCATTAGGG+AGG 0.539387 7.2:+7104260 MS.gene23044:CDS
TGTTTGTATTGTTGGAGCTG+AGG 0.551124 7.2:+7103952 MS.gene23044:CDS
CAATGCAAGTCAGAAGAACT+GGG 0.551796 7.2:+7103865 MS.gene23044:CDS
AGATATTTGAGAAATTTACA+TGG 0.560145 7.2:+7101613 MS.gene23044:CDS
CCTAATGCAGATTGAACATG+AGG 0.581300 7.2:-7104400 None:intergenic
CTGCCAATATGTTTAAGGGA+TGG 0.581416 7.2:+7101910 MS.gene23044:CDS
TGAAAAGTTGAAGGAGAATG+TGG 0.590764 7.2:+7104456 MS.gene23044:CDS
GGCTGAGACTCAATAAGTGA+AGG 0.596886 7.2:-7104211 None:intergenic
ATTAGGAATGAAAAGTTATG+TGG 0.599520 7.2:+7104417 MS.gene23044:CDS
GGTAACGCTAGTTCTTGAAA+CGG 0.603557 7.2:+7104477 MS.gene23044:CDS
CGCTAGTTCTTGAAACGGAG+AGG 0.622684 7.2:+7104482 MS.gene23044:CDS
GAGAACAACCCTGTGTCAGT+AGG 0.632827 7.2:-7104127 None:intergenic
TCCGCCGAGGACAAAAGGAT+CGG 0.635544 7.2:-7101679 None:intergenic
GCACTAAACCTACTGACACA+GGG 0.669892 7.2:+7104119 MS.gene23044:CDS
CAGCTTCATGATCCTAACAA+CGG 0.670959 7.2:+7103914 MS.gene23044:CDS
AATGCAAGTCAGAAGAACTG+GGG 0.737691 7.2:+7103866 MS.gene23044:CDS
CATACCATGGATATCCGCCG+AGG 0.754008 7.2:-7101692 None:intergenic
GCCAACATGACAATCACACG+AGG 0.760979 7.2:+7101978 MS.gene23044:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAAAATGTAATAAA+TGG - chr7.2:7101795-7101814 None:intergenic 10.0%
!! TTAAAATGAAAAAAAGATAA+AGG + chr7.2:7102841-7102860 MS.gene23044:intron 10.0%
!!! ATAGTTAGATAAATTTTATT+AGG - chr7.2:7102916-7102935 None:intergenic 10.0%
!!! ATCTTTTTTTCATTTTAATT+TGG - chr7.2:7102839-7102858 None:intergenic 10.0%
!!! CTTTTTTATGAAAAATTTAT+AGG + chr7.2:7101751-7101770 MS.gene23044:intron 10.0%
!!! TTTATATATTTTACGATTTT+AGG - chr7.2:7103241-7103260 None:intergenic 10.0%
!! ATAGATTTAAATTCTGAATT+AGG + chr7.2:7104583-7104602 MS.gene23044:CDS 15.0%
!! CTTAAAAATTCATATGAAAA+TGG - chr7.2:7102699-7102718 None:intergenic 15.0%
!! GTATATAAAAATTGACAAAA+AGG + chr7.2:7102812-7102831 MS.gene23044:intron 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG - chr7.2:7102661-7102680 None:intergenic 15.0%
!!! TATTTTTCTAAACGATAAAA+TGG - chr7.2:7103578-7103597 None:intergenic 15.0%
!!! TTACTCTATAATTTAGAATT+TGG + chr7.2:7103391-7103410 MS.gene23044:intron 15.0%
!!! TTCATGATTTTATTTTCTTA+TGG + chr7.2:7102726-7102745 MS.gene23044:intron 15.0%
!!! TTTTTCTTTTTTAAGTAGTT+TGG - chr7.2:7102360-7102379 None:intergenic 15.0%
!! AAATTAAAGGACTATGATTA+AGG + chr7.2:7103652-7103671 MS.gene23044:intron 20.0%
!! ACAAAATACATTTCAAAAGA+AGG - chr7.2:7103273-7103292 None:intergenic 20.0%
!! AGATATTTGAGAAATTTACA+TGG + chr7.2:7101613-7101632 MS.gene23044:CDS 20.0%
!! CAACAGTTTATCAATATATT+TGG + chr7.2:7101875-7101894 MS.gene23044:CDS 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG - chr7.2:7102630-7102649 None:intergenic 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG - chr7.2:7102631-7102650 None:intergenic 20.0%
!! TTTAGATGAAAAATCACTAA+TGG + chr7.2:7103541-7103560 MS.gene23044:intron 20.0%
!! TTTAGGAGGAAAAATAATAA+AGG - chr7.2:7103224-7103243 None:intergenic 20.0%
!!! AGTATATATTTTCTTTTGAG+AGG + chr7.2:7102407-7102426 MS.gene23044:intron 20.0%
!!! ATACTTTATCTTTTTAACGA+CGG + chr7.2:7103188-7103207 MS.gene23044:intron 20.0%
!!! ATATATTTTACGATTTTAGG+AGG - chr7.2:7103238-7103257 None:intergenic 20.0%
!!! GTTATCTGAAATTAAGTTAA+GGG + chr7.2:7102872-7102891 MS.gene23044:intron 20.0%
!!! TGTTATCTGAAATTAAGTTA+AGG + chr7.2:7102871-7102890 MS.gene23044:intron 20.0%
!!! TTTTGTATTTTGATCTGATT+TGG + chr7.2:7101805-7101824 MS.gene23044:intron 20.0%
! AAATTGACATTCGTTTAAGA+TGG - chr7.2:7103514-7103533 None:intergenic 25.0%
! AATTTAGATTTGATGTCACT+TGG + chr7.2:7104371-7104390 MS.gene23044:CDS 25.0%
! ACTAAAGTGAATTACATTGT+TGG + chr7.2:7102987-7103006 MS.gene23044:intron 25.0%
! AGATATCTTAAAACGAGATA+TGG - chr7.2:7103718-7103737 None:intergenic 25.0%
! ATTAGGAATGAAAAGTTATG+TGG + chr7.2:7104417-7104436 MS.gene23044:CDS 25.0%
! CTTAATTTCAGATAACAGTT+TGG - chr7.2:7102868-7102887 None:intergenic 25.0%
! GCAACACGATATTAATAAAA+TGG + chr7.2:7102586-7102605 MS.gene23044:intron 25.0%
! GTATAGTTGTTATCTAGAAA+AGG - chr7.2:7103172-7103191 None:intergenic 25.0%
! GTGAAATAGTTTCCATATTT+GGG - chr7.2:7104081-7104100 None:intergenic 25.0%
! TAAATTCTGAATTAGGATGT+GGG + chr7.2:7104590-7104609 MS.gene23044:CDS 25.0%
! TAATATCGTGTTGCATAATT+GGG - chr7.2:7102580-7102599 None:intergenic 25.0%
! TCATATGAAAATGGATCAAA+AGG - chr7.2:7102690-7102709 None:intergenic 25.0%
! TGAAAAATCACTAATGGTTA+TGG + chr7.2:7103547-7103566 MS.gene23044:intron 25.0%
! TTAAATTCTGAATTAGGATG+TGG + chr7.2:7104589-7104608 MS.gene23044:CDS 25.0%
! TTAATATCGTGTTGCATAAT+TGG - chr7.2:7102581-7102600 None:intergenic 25.0%
! TTTCTAAACGATAAAATGGT+GGG - chr7.2:7103574-7103593 None:intergenic 25.0%
!! TTCGAATCACTTAGAAATTT+TGG + chr7.2:7101717-7101736 MS.gene23044:intron 25.0%
!! TTTTCTAAACGATAAAATGG+TGG - chr7.2:7103575-7103594 None:intergenic 25.0%
!!! AAATATTTTGTCTGAAGCTT+TGG + chr7.2:7103626-7103645 MS.gene23044:intron 25.0%
!!! ATCCATAATTTTTTCCATTG+AGG - chr7.2:7104155-7104174 None:intergenic 25.0%
!!! ATTTTGATCTGATTTGGTTT+TGG + chr7.2:7101811-7101830 MS.gene23044:intron 25.0%
!!! CATTTTAATGAGATGTGAAT+TGG + chr7.2:7103458-7103477 MS.gene23044:intron 25.0%
!!! GAAGCTTTGGATTAAATTAA+AGG + chr7.2:7103639-7103658 MS.gene23044:intron 25.0%
!!! GTTGATTTGATTACAGTATT+AGG + chr7.2:7103773-7103792 MS.gene23044:intron 25.0%
!!! TAAGGATCTTCAAGTTTTAT+GGG + chr7.2:7104336-7104355 MS.gene23044:CDS 25.0%
!!! TAGTCCCTTAACTTTATTTT+AGG + chr7.2:7102623-7102642 MS.gene23044:intron 25.0%
!!! TATATTTTCTTTTGAGAGGT+AGG + chr7.2:7102411-7102430 MS.gene23044:intron 25.0%
!!! TCCATAATTTTTTCCATTGA+GGG - chr7.2:7104154-7104173 None:intergenic 25.0%
!!! TTCTTTTTTAAGTAGTTTGG+TGG - chr7.2:7102357-7102376 None:intergenic 25.0%
ACAAAATTTCTACCGTCAAA+AGG - chr7.2:7102016-7102035 None:intergenic 30.0%
ACCCTCAATGGAAAAAATTA+TGG + chr7.2:7104150-7104169 MS.gene23044:CDS 30.0%
ACTAGTATTCTACGAATGAA+AGG + chr7.2:7103425-7103444 MS.gene23044:intron 30.0%
AGGATTCTTATGTTTCCAAA+AGG + chr7.2:7101840-7101859 MS.gene23044:CDS 30.0%
ATTGTATGACATGTCATGAT+TGG - chr7.2:7102073-7102092 None:intergenic 30.0%
CAAAATTTCTACCGTCAAAA+GGG - chr7.2:7102015-7102034 None:intergenic 30.0%
CAAACTGCCAATATGTTTAA+GGG + chr7.2:7101906-7101925 MS.gene23044:CDS 30.0%
GGATTCTTATGTTTCCAAAA+GGG + chr7.2:7101841-7101860 MS.gene23044:CDS 30.0%
GGTGAAATAGTTTCCATATT+TGG - chr7.2:7104082-7104101 None:intergenic 30.0%
TAAAACGAGATATGGAAACA+TGG - chr7.2:7103710-7103729 None:intergenic 30.0%
TCAAAATGTGCATATGGAAT+TGG + chr7.2:7104051-7104070 MS.gene23044:CDS 30.0%
TGAAAGTCAAAATGTGCATA+TGG + chr7.2:7104045-7104064 MS.gene23044:CDS 30.0%
TTCTAAACGATAAAATGGTG+GGG - chr7.2:7103573-7103592 None:intergenic 30.0%
TTCTTATGCAATCATAGACA+AGG - chr7.2:7102776-7102795 None:intergenic 30.0%
TTGTGTTTCAAATATGCATG+TGG + chr7.2:7102032-7102051 MS.gene23044:intron 30.0%
! ATGATCCAATTTTCCTTTCA+AGG + chr7.2:7102516-7102535 MS.gene23044:intron 30.0%
! TCGTTTAAGATGGAATTTGT+TGG - chr7.2:7103504-7103523 None:intergenic 30.0%
! TTTGTCGTTTCATTCATTCA+TGG + chr7.2:7102461-7102480 MS.gene23044:intron 30.0%
! TTTTTCCAAGGTGAATAAGT+GGG - chr7.2:7102323-7102342 None:intergenic 30.0%
!! GTAAGGATCTTCAAGTTTTA+TGG + chr7.2:7104335-7104354 MS.gene23044:CDS 30.0%
!! TTGTTTTACACAAACGAACA+CGG + chr7.2:7102255-7102274 MS.gene23044:intron 30.0%
!!! ATCTGATTTGGTTTTGGTTT+AGG + chr7.2:7101817-7101836 MS.gene23044:intron 30.0%
!!! CATTTTGACTTTCAGATGTT+AGG - chr7.2:7104039-7104058 None:intergenic 30.0%
!!! GTTAGAATTCGTTTTTTCCA+AGG - chr7.2:7102335-7102354 None:intergenic 30.0%
!!! TTTTTTCCAAGGTGAATAAG+TGG - chr7.2:7102324-7102343 None:intergenic 30.0%
AAGTTATGTGGAGAAAGCTT+TGG + chr7.2:7104429-7104448 MS.gene23044:CDS 35.0%
ACGGTACATGATTATATGCA+GGG + chr7.2:7102274-7102293 MS.gene23044:intron 35.0%
AGTGATTCGAATTCATACCA+TGG - chr7.2:7101708-7101727 None:intergenic 35.0%
CAGTAGTGTAGAACAATTAG+AGG + chr7.2:7104177-7104196 MS.gene23044:CDS 35.0%
CCAATCCTTGAAAGGAAAAT+TGG - chr7.2:7102524-7102543 None:intergenic 35.0%
CTAGACTACTTGACAAAAAG+TGG + chr7.2:7103076-7103095 MS.gene23044:intron 35.0%
CTTTATCAACCAATCATGAC+AGG + chr7.2:7102197-7102216 MS.gene23044:intron 35.0%
GACATGTCATACAATGTTAG+TGG + chr7.2:7102078-7102097 MS.gene23044:intron 35.0%
GCAAACTGCCAATATGTTTA+AGG + chr7.2:7101905-7101924 MS.gene23044:CDS 35.0%
GTGAAGGATGTTTGTATTGT+TGG + chr7.2:7103944-7103963 MS.gene23044:CDS 35.0%
TAATGCAGCAAATGCCAAAT+CGG - chr7.2:7104257-7104276 None:intergenic 35.0%
TATGAATGACCAAGCTTGTA+AGG + chr7.2:7104318-7104337 MS.gene23044:CDS 35.0%
TGAAAAGTTGAAGGAGAATG+TGG + chr7.2:7104456-7104475 MS.gene23044:CDS 35.0%
TTCACGATAAAACCGTTGTT+AGG - chr7.2:7103929-7103948 None:intergenic 35.0%
TTCTAATGACCTGTCATGAT+TGG - chr7.2:7102209-7102228 None:intergenic 35.0%
TTCTACGAATGAAAGGATTC+TGG + chr7.2:7103432-7103451 MS.gene23044:intron 35.0%
TTTGGAGGTTGAAAAGTTGA+AGG + chr7.2:7104447-7104466 MS.gene23044:CDS 35.0%
! AGACACTTGTTGAAAGCAAA+AGG + chr7.2:7104550-7104569 MS.gene23044:CDS 35.0%
! ATTTGGCATTTGCTGCATTA+GGG + chr7.2:7104257-7104276 MS.gene23044:CDS 35.0%
! CCAATTTTCCTTTCAAGGAT+TGG + chr7.2:7102521-7102540 MS.gene23044:intron 35.0%
! CTTTTTAACGACGGCAAAAT+TGG + chr7.2:7103197-7103216 MS.gene23044:intron 35.0%
! TAGAACTCTATCCCTTTTGA+CGG + chr7.2:7102001-7102020 MS.gene23044:intron 35.0%
! TTGTTTACATCGTTCCCTTT+TGG - chr7.2:7101858-7101877 None:intergenic 35.0%
! TTTTCCAAGGTGAATAAGTG+GGG - chr7.2:7102322-7102341 None:intergenic 35.0%
!! TAACAACGGTTTTATCGTGA+AGG + chr7.2:7103928-7103947 MS.gene23044:CDS 35.0%
!!! TGATTTGGTTTTGGTTTAGG+AGG + chr7.2:7101820-7101839 MS.gene23044:intron 35.0%
AATGCAAGTCAGAAGAACTG+GGG + chr7.2:7103866-7103885 MS.gene23044:CDS 40.0%
AGCTGAGGTTTCAGTTTGTA+AGG + chr7.2:7103967-7103986 MS.gene23044:CDS 40.0%
ATGCATTTCCCTACTACCAA+GGG - chr7.2:7102496-7102515 None:intergenic 40.0%
CAATGCAAGTCAGAAGAACT+GGG + chr7.2:7103865-7103884 MS.gene23044:CDS 40.0%
CACGGTACATGATTATATGC+AGG + chr7.2:7102273-7102292 MS.gene23044:intron 40.0%
CAGCTTCATGATCCTAACAA+CGG + chr7.2:7103914-7103933 MS.gene23044:CDS 40.0%
CCTAATGCAGATTGAACATG+AGG - chr7.2:7104403-7104422 None:intergenic 40.0%
CCTCATGTTCAATCTGCATT+AGG + chr7.2:7104400-7104419 MS.gene23044:CDS 40.0%
CGGTACATGATTATATGCAG+GGG + chr7.2:7102275-7102294 MS.gene23044:intron 40.0%
CTGCCAATATGTTTAAGGGA+TGG + chr7.2:7101910-7101929 MS.gene23044:CDS 40.0%
CTTGAAGATCCTTACAAGCT+TGG - chr7.2:7104330-7104349 None:intergenic 40.0%
GAGCTAAACTCGTGAAAGTA+TGG - chr7.2:7103895-7103914 None:intergenic 40.0%
GATGTGAATTGGACCATGAA+AGG + chr7.2:7103469-7103488 MS.gene23044:intron 40.0%
GCTCCATCCCTTAAACATAT+TGG - chr7.2:7101916-7101935 None:intergenic 40.0%
GGAATTGGAAGTCCCAAATA+TGG + chr7.2:7104066-7104085 MS.gene23044:CDS 40.0%
GTGCAAACTAGTGTAGAAAC+TGG - chr7.2:7104103-7104122 None:intergenic 40.0%
TATGCATTTCCCTACTACCA+AGG - chr7.2:7102497-7102516 None:intergenic 40.0%
TCAATGCAAGTCAGAAGAAC+TGG + chr7.2:7103864-7103883 MS.gene23044:CDS 40.0%
TGTTTGTATTGTTGGAGCTG+AGG + chr7.2:7103952-7103971 MS.gene23044:CDS 40.0%
TTGGCATGTCTTTCCTTTCA+TGG - chr7.2:7103485-7103504 None:intergenic 40.0%
TTTCCTTTCAAGGATTGGAG+TGG + chr7.2:7102526-7102545 MS.gene23044:intron 40.0%
! GATTTGGCATTTGCTGCATT+AGG + chr7.2:7104256-7104275 MS.gene23044:CDS 40.0%
! GGTAACGCTAGTTCTTGAAA+CGG + chr7.2:7104477-7104496 MS.gene23044:CDS 40.0%
! TTATGTGGAGAAAGCTTTGG+AGG + chr7.2:7104432-7104451 MS.gene23044:CDS 40.0%
!! TTGAGCTCATGGTTAGTTTC+TGG - chr7.2:7103848-7103867 None:intergenic 40.0%
AACACCCCACTTATTCACCT+TGG + chr7.2:7102315-7102334 MS.gene23044:intron 45.0%
AATTAGGATGTGGGAGTTGG+AGG + chr7.2:7104599-7104618 MS.gene23044:CDS 45.0%
ACATGATTATATGCAGGGGC+TGG + chr7.2:7102279-7102298 MS.gene23044:intron 45.0%
ACCTCGTGTGATTGTCATGT+TGG - chr7.2:7101982-7102001 None:intergenic 45.0%
CTGAATTAGGATGTGGGAGT+TGG + chr7.2:7104596-7104615 MS.gene23044:CDS 45.0%
GCACTAAACCTACTGACACA+GGG + chr7.2:7104119-7104138 MS.gene23044:CDS 45.0%
GGCTGAGACTCAATAAGTGA+AGG - chr7.2:7104214-7104233 None:intergenic 45.0%
GTAATGACGCGACTCTTCTT+CGG - chr7.2:7104235-7104254 None:intergenic 45.0%
TCTTGAAACGGAGAGGCTAA+AGG + chr7.2:7104489-7104508 MS.gene23044:CDS 45.0%
TGCACTAAACCTACTGACAC+AGG + chr7.2:7104118-7104137 MS.gene23044:CDS 45.0%
! TACTCCGATCCTTTTGTCCT+CGG + chr7.2:7101675-7101694 MS.gene23044:CDS 45.0%
! TCTGACTTGCATTGAGCTCA+TGG - chr7.2:7103859-7103878 None:intergenic 45.0%
!! TTGGAGTGGTGGTGGAATTT+AGG + chr7.2:7102540-7102559 MS.gene23044:intron 45.0%
!!! ATTTTAAACTTTAAAAATTA+TGG - chr7.2:7102109-7102128 None:intergenic 5.0%
AGGGTTGTTCTCACCCTCAA+TGG + chr7.2:7104138-7104157 MS.gene23044:CDS 50.0%
CCACCACTCCAATCCTTGAA+AGG - chr7.2:7102532-7102551 None:intergenic 50.0%
CCTTTCAAGGATTGGAGTGG+TGG + chr7.2:7102529-7102548 MS.gene23044:intron 50.0%
GAGAACAACCCTGTGTCAGT+AGG - chr7.2:7104130-7104149 None:intergenic 50.0%
GCCAACATGACAATCACACG+AGG + chr7.2:7101978-7101997 MS.gene23044:CDS 50.0%
TTCAAGGATTGGAGTGGTGG+TGG + chr7.2:7102532-7102551 MS.gene23044:intron 50.0%
TTCATGGACTCTCTGACCCT+TGG + chr7.2:7102477-7102496 MS.gene23044:intron 50.0%
! ACTCTCTGACCCTTGGTAGT+AGG + chr7.2:7102484-7102503 MS.gene23044:intron 50.0%
! CGCTAGTTCTTGAAACGGAG+AGG + chr7.2:7104482-7104501 MS.gene23044:CDS 50.0%
! CTCTCTGACCCTTGGTAGTA+GGG + chr7.2:7102485-7102504 MS.gene23044:intron 50.0%
! GAGTCGCGTCATTACCGATT+TGG + chr7.2:7104240-7104259 MS.gene23044:CDS 50.0%
! GGCATTTGCTGCATTAGGGA+GGG + chr7.2:7104261-7104280 MS.gene23044:CDS 50.0%
! GGTGAATAAGTGGGGTGTTC+CGG - chr7.2:7102314-7102333 None:intergenic 50.0%
! TGGCATTTGCTGCATTAGGG+AGG + chr7.2:7104260-7104279 MS.gene23044:CDS 50.0%
CATACCATGGATATCCGCCG+AGG - chr7.2:7101695-7101714 None:intergenic 55.0%
GGATATCCGCCGAGGACAAA+AGG - chr7.2:7101687-7101706 None:intergenic 55.0%
TCCGCCGAGGACAAAAGGAT+CGG - chr7.2:7101682-7101701 None:intergenic 55.0%
TTGTCCTCGGCGGATATCCA+TGG + chr7.2:7101688-7101707 MS.gene23044:CDS 55.0%
! TCCGATCCTTTTGTCCTCGG+CGG + chr7.2:7101678-7101697 MS.gene23044:CDS 55.0%
CAGGGGCTGGAGTTCGAAGC+CGG + chr7.2:7102292-7102311 MS.gene23044:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7101588 7104627 7101588 ID=MS.gene23044
chr7.2 mRNA 7101588 7104627 7101588 ID=MS.gene23044.t1;Parent=MS.gene23044
chr7.2 exon 7101588 7101709 7101588 ID=MS.gene23044.t1.exon1;Parent=MS.gene23044.t1
chr7.2 CDS 7101588 7101709 7101588 ID=cds.MS.gene23044.t1;Parent=MS.gene23044.t1
chr7.2 exon 7101839 7101999 7101839 ID=MS.gene23044.t1.exon2;Parent=MS.gene23044.t1
chr7.2 CDS 7101839 7101999 7101839 ID=cds.MS.gene23044.t1;Parent=MS.gene23044.t1
chr7.2 exon 7103849 7104627 7103849 ID=MS.gene23044.t1.exon3;Parent=MS.gene23044.t1
chr7.2 CDS 7103849 7104627 7103849 ID=cds.MS.gene23044.t1;Parent=MS.gene23044.t1
Gene Sequence

>MS.gene23044

ATGGAGCATCAAGAAATGAAGGATGAGATATTTGAGAAATTTACATGGAAGATTGAGAACTTCTCTCGTTTGAACACTAATGAGCTTTACTCCGATCCTTTTGTCCTCGGCGGATATCCATGGTATGAATTCGAATCACTTAGAAATTTTGGATATATATTTTCTTTTTTATGAAAAATTTATAGGATATGTTGATCTTTGATACCATTTATTACATTTTTGTATTTTGATCTGATTTGGTTTTGGTTTAGGAGGATTCTTATGTTTCCAAAAGGGAACGATGTAAACAACAGTTTATCAATATATTTGGAAGCTATGCAAACTGCCAATATGTTTAAGGGATGGAGCAGAGATGTGAAATTTAAACTGCTTGTATTCAATCAGATCAATGCCAACATGACAATCACACGAGGTAGAACTCTATCCCTTTTGACGGTAGAAATTTTGTGTTTCAAATATGCATGTGGTATATGCAAATGAAACCAATCATGACATGTCATACAATGTTAGTGGTACATCCATAATTTTTAAAGTTTAAAATAATATTTTTTTTTTGAAGAATATAATAATTTAATTTATATACAATGTTAGTGTGAAGAGTTTTTTTTACTTTATCAACCAATCATGACAGGTCATTAGAAACATTTTGATGTGCTGTCAATTTAAATTGTTTTACACAAACGAACACGGTACATGATTATATGCAGGGGCTGGAGTTCGAAGCCGGAACACCCCACTTATTCACCTTGGAAAAAACGAATTCTAACCACCAAACTACTTAAAAAAGAAAAAAAAAACGATAACTAAAAAAACTACGAAAGTATATATTTTCTTTTGAGAGGTAGGAAAGTATTATTTGCTTCTTTATTTTGTTTTGTCGTTTCATTCATTCATGGACTCTCTGACCCTTGGTAGTAGGGAAATGCATATGATCCAATTTTCCTTTCAAGGATTGGAGTGGTGGTGGAATTTAGGCTCACTTGACACTACCCAATTATGCAACACGATATTAATAAAATGGCAAAATTACACTTTTAGTCCCTTAACTTTATTTTAGGTAACAGTTTAGTCCTTTATCTTTTTTTCATTTCAATTTTGTCCTTTTGATCCATTTTCATATGAATTTTTAAGCTTAAAATTCATGATTTTATTTTCTTATGGTCTTTCAGTCTTCAAAATTATGATCCTTGTCTATGATTGCATAAGAATATTAAATTTGAAAATGTATATAAAAATTGACAAAAAGGACCAAATTAAAATGAAAAAAAGATAAAGGACCAAACTGTTATCTGAAATTAAGTTAAGGGACTAAAAATGTAATTTTGCCTAATAAAATTTATCTAACTATATATCTCGTTTTTGAAATTTACTCTTGTTTCTCTGAATTTGTGTGTTATTTACTAAAGTGAATTACATTGTTGGACAAAGAGATTTATAAATTTAATATTAGTATTGTCGCTAAAATTGTAGAAGAGAGAATTCTAACTACTAGACTACTTGACAAAAAGTGGTAATATTATATAATCTAGACAAAACTTTTCTAGTGATCTTTTAACTTAATTTACAATTTTAAATCGATTTCCTTTTCTAGATAACAACTATACTTTATCTTTTTAACGACGGCAAAATTGGACCTTTATTATTTTTCCTCCTAAAATCGTAAAATATATAAATTATATTGACCTTCTTTTGAAATGTATTTTGTCATAATGTTTTCATTTTTTAATTATACTGTCATTTTTACACTATAATTTAGAATGTATTTTGTCATAATGTTTTTATTTTTTAATTAAATTGTCATTTTTACTCTATAATTTAGAATTTGGATGTCATTTTGACTAGTATTCTACGAATGAAAGGATTCTGGTTTCATTTTAATGAGATGTGAATTGGACCATGAAAGGAAAGACATGCCAACAAATTCCATCTTAAACGAATGTCAATTTTCATGTTTTTAGATGAAAAATCACTAATGGTTATGGCCCCACCATTTTATCGTTTAGAAAAATAAATGACATTTTTATCTAAAAAAACAAATAAATATTTTGTCTGAAGCTTTGGATTAAATTAAAGGACTATGATTAAGGTTTGCATCTAATCTATCACTGCTCTCATGCAACCATGTTTCCATATCTCGTTTTAAGATATCTTTTATGACTATCTTACTTAAAAATTGCTTTCATGTGTTGATTTGATTACAGTATTAGGCATAAATTCTTTTTTATGTAACTAAATTGATTCTTCATACATCAATTTACCAGAAACTAACCATGAGCTCAATGCAAGTCAGAAGAACTGGGGTTTCCATACTTTCACGAGTTTAGCTCAGCTTCATGATCCTAACAACGGTTTTATCGTGAAGGATGTTTGTATTGTTGGAGCTGAGGTTTCAGTTTGTAAGGTAACACATGAGAACAAAGTGAATCAAGAAGCGAACTTAGCTGTTTTCCTAACATCTGAAAGTCAAAATGTGCATATGGAATTGGAAGTCCCAAATATGGAAACTATTTCACCAGTTTCTACACTAGTTTGCACTAAACCTACTGACACAGGGTTGTTCTCACCCTCAATGGAAAAAATTATGGATTTCAGTAGTGTAGAACAATTAGAGGAAATATATAATCCTTCACTTATTGAGTCTCAGCCGAAGAAGAGTCGCGTCATTACCGATTTGGCATTTGCTGCATTAGGGAGGGTTTTTTATTTCTTTAAGACTAAAAAAGTGAAAGATATGAATGACCAAGCTTGTAAGGATCTTCAAGTTTTATGGGATGAACTTAAGAAATTTAGATTTGATGTCACTTGGCTAGAGCCTCATGTTCAATCTGCATTAGGAATGAAAAGTTATGTGGAGAAAGCTTTGGAGGTTGAAAAGTTGAAGGAGAATGTGGTAACGCTAGTTCTTGAAACGGAGAGGCTAAAGGCAAAGTTGCTTGCTGCTGAAGTAAATCTTGACATAGAAAGACACTTGTTGAAAGCAAAAGGCTTCAAAGAAATAGATTTAAATTCTGAATTAGGATGTGGGAGTTGGAGGCCATAG
Protein sequence

>MS.gene23044.t1

MEHQEMKDEIFEKFTWKIENFSRLNTNELYSDPFVLGGYPWRILMFPKGNDVNNSLSIYLEAMQTANMFKGWSRDVKFKLLVFNQINANMTITRETNHELNASQKNWGFHTFTSLAQLHDPNNGFIVKDVCIVGAEVSVCKVTHENKVNQEANLAVFLTSESQNVHMELEVPNMETISPVSTLVCTKPTDTGLFSPSMEKIMDFSSVEQLEEIYNPSLIESQPKKSRVITDLAFAALGRVFYFFKTKKVKDMNDQACKDLQVLWDELKKFRFDVTWLEPHVQSALGMKSYVEKALEVEKLKENVVTLVLETERLKAKLLAAEVNLDIERHLLKAKGFKEIDLNSELGCGSWRP