Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25673.t1 | XP_013458440.1 | 92.2 | 245 | 19 | 0 | 1 | 245 | 30 | 274 | 5.10E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25673.t1 | O64571 | 33.0 | 194 | 105 | 6 | 2 | 181 | 31 | 213 | 1.4e-13 | 78.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25673.t1 | A0A072UT04 | 92.2 | 245 | 19 | 0 | 1 | 245 | 30 | 274 | 3.7e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25673 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene25673 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene25673 | 0.807772 | 4.29E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene25673 | 0.806069 | 9.84E-50 | -1.69E-46 |
| MS.gene049672 | MS.gene25673 | 0.802747 | 4.85E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene25673 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene25673 | 0.807783 | 4.27E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene25673 | 0.801252 | 9.83E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene25673 | 0.812922 | 3.32E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene25673 | 0.808845 | 2.54E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene25673 | 0.806765 | 7.02E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene25673 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene25673 | 0.802917 | 4.47E-49 | -1.69E-46 |
| MS.gene050901 | MS.gene25673 | 0.808379 | 3.19E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene25673 | 0.816732 | 4.75E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene25673 | 0.802927 | 4.45E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene25673 | 0.84917 | 3.84E-60 | -1.69E-46 |
| MS.gene05157 | MS.gene25673 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene25673 | 0.818126 | 2.31E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene25673 | 0.845836 | 3.17E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene25673 | 0.845131 | 4.92E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene25673 | 0.84286 | 2.00E-58 | -1.69E-46 |
| MS.gene051791 | MS.gene25673 | 0.888068 | 8.19E-73 | -1.69E-46 |
| MS.gene05188 | MS.gene25673 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene25673 | 0.813453 | 2.54E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene25673 | 0.826001 | 3.45E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene25673 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene25673 | 0.811575 | 6.54E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene25673 | 0.803774 | 2.97E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene25673 | 0.808107 | 3.64E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene25673 | 0.803229 | 3.85E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene25673 | 0.834296 | 3.25E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene25673 | 0.855271 | 7.06E-62 | -1.69E-46 |
| MS.gene053581 | MS.gene25673 | 0.810842 | 9.43E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene25673 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene25673 | 0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene25673 | 0.810317 | 1.22E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene25673 | 0.820192 | 7.81E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene25673 | 0.81825 | 2.16E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene25673 | 0.822717 | 2.04E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene25673 | 0.834543 | 2.82E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene25673 | 0.83006 | 3.63E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene25673 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene25673 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene25673 | -0.84561 | 3.65E-59 | -1.69E-46 |
| MS.gene055778 | MS.gene25673 | 0.802743 | 4.85E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene25673 | 0.802065 | 6.69E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene25673 | -0.828969 | 6.69E-55 | -1.69E-46 |
| MS.gene056215 | MS.gene25673 | 0.851251 | 1.00E-60 | -1.69E-46 |
| MS.gene056308 | MS.gene25673 | 0.803138 | 4.02E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene25673 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene25673 | 0.82647 | 2.67E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene25673 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene25673 | 0.809633 | 1.72E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene25673 | 0.806766 | 7.01E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene25673 | 0.808189 | 3.50E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene25673 | 0.814591 | 1.43E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene25673 | 0.817085 | 3.96E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene25673 | 0.807465 | 4.99E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene25673 | 0.853607 | 2.14E-61 | -1.69E-46 |
| MS.gene060587 | MS.gene25673 | 0.84192 | 3.55E-58 | -1.69E-46 |
| MS.gene061176 | MS.gene25673 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene25673 | 0.807951 | 3.93E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene25673 | 0.807996 | 3.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25673.t1 | MTR_4g125720 | 92.245 | 245 | 19 | 0 | 1 | 245 | 30 | 274 | 2.27e-165 | 459 |
| MS.gene25673.t1 | MTR_4g125720 | 92.271 | 207 | 16 | 0 | 1 | 207 | 30 | 236 | 4.20e-139 | 390 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25673.t1 | AT2G19385 | 49.763 | 211 | 88 | 5 | 1 | 211 | 30 | 222 | 3.46e-53 | 173 |
| MS.gene25673.t1 | AT2G19380 | 34.463 | 177 | 88 | 6 | 1 | 161 | 30 | 194 | 4.25e-19 | 86.3 |
| MS.gene25673.t1 | AT2G19380 | 44.578 | 83 | 44 | 1 | 49 | 131 | 207 | 287 | 1.02e-13 | 70.5 |
Find 50 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCAGTTGACGTGGAAAA+TGG | 0.191316 | 8.1:-6454564 | MS.gene25673:CDS |
| GGAAAATGGGGAAGTATTTC+AGG | 0.217234 | 8.1:-6454550 | MS.gene25673:CDS |
| AAACTTCATTCACCGGTTTC+AGG | 0.267736 | 8.1:+6454655 | None:intergenic |
| CATCAGTTGACGTGGAAAAT+GGG | 0.380294 | 8.1:-6454563 | MS.gene25673:CDS |
| TAGATTCCTGCAGTGCTTTG+AGG | 0.398509 | 8.1:+6454205 | None:intergenic |
| TTCTTCATCTTCAATCCATC+AGG | 0.401465 | 8.1:+6454243 | None:intergenic |
| AATTCAACATACAAATTTCA+AGG | 0.401997 | 8.1:+6454476 | None:intergenic |
| CTTTGTTTGCCATCTTTGAC+AGG | 0.405588 | 8.1:+6455758 | None:intergenic |
| TCAGAAGACTCGTGCAACTT+TGG | 0.435496 | 8.1:+6454687 | None:intergenic |
| GCTTCGAAGCATGGAACGCT+CGG | 0.436244 | 8.1:+6454808 | None:intergenic |
| TCCACTGCATCCTTTGCATC+AGG | 0.440074 | 8.1:+6454756 | None:intergenic |
| TTTGCCATCTTTGACAGGCT+TGG | 0.441946 | 8.1:+6455763 | None:intergenic |
| CAGGCGCAAAATTATCTGTC+TGG | 0.451138 | 8.1:+6454775 | None:intergenic |
| GGAGACGGGTTCTAATGATA+TGG | 0.458688 | 8.1:-6454736 | MS.gene25673:CDS |
| ATTGACTGTGGACAGATGTT+TGG | 0.460865 | 8.1:-6457042 | MS.gene25673:CDS |
| CAAGAGAGAGGAAAATAAAG+TGG | 0.462140 | 8.1:-6454518 | MS.gene25673:CDS |
| CAGGAAAAGTATGGTCCAAA+AGG | 0.462353 | 8.1:-6455815 | MS.gene25673:CDS |
| TGAACAAAATAACCTGAAAC+CGG | 0.469254 | 8.1:-6454667 | MS.gene25673:CDS |
| TACTGGTGGCAGCATCCTGA+TGG | 0.473972 | 8.1:-6454258 | MS.gene25673:intron |
| GCAAAGGATGCAGTGGAGAC+GGG | 0.502647 | 8.1:-6454750 | MS.gene25673:CDS |
| TGCAAAGGATGCAGTGGAGA+CGG | 0.510937 | 8.1:-6454751 | MS.gene25673:CDS |
| CTTCGAAGCATGGAACGCTC+GGG | 0.518211 | 8.1:+6454809 | None:intergenic |
| TCGGAAGAAACTTCATTCAC+CGG | 0.522070 | 8.1:+6454648 | None:intergenic |
| CTAGTGGTTGCTTCGAAGCA+TGG | 0.522690 | 8.1:+6454799 | None:intergenic |
| GAGCGAGGCGATTGAGCAGA+AGG | 0.538864 | 8.1:-6454157 | None:intergenic |
| GCTGCCAAGCCTGTCAAAGA+TGG | 0.543446 | 8.1:-6455767 | MS.gene25673:CDS |
| AAATTATCTGTCTGGACTAG+TGG | 0.555342 | 8.1:+6454783 | None:intergenic |
| GCTAGTCGTTGATATTAATG+TGG | 0.556605 | 8.1:-6455735 | MS.gene25673:CDS |
| CTAGTCGTTGATATTAATGT+GGG | 0.562155 | 8.1:-6455734 | MS.gene25673:CDS |
| AGTTGTCCTCAAAGCACTGC+AGG | 0.573521 | 8.1:-6454211 | MS.gene25673:CDS |
| AACGTCCTCCGTGGTTCTGT+AGG | 0.574054 | 8.1:-6455703 | MS.gene25673:intron |
| GAAAATGGGGAAGTATTTCA+GGG | 0.576073 | 8.1:-6454549 | MS.gene25673:CDS |
| ATGCTGAAGGAAAGAAACAC+GGG | 0.581891 | 8.1:-6454839 | MS.gene25673:CDS |
| GCACTTCTTCTACATGCTGA+AGG | 0.586895 | 8.1:-6454852 | MS.gene25673:CDS |
| ATCAGTTGACGTGGAAAATG+GGG | 0.599482 | 8.1:-6454562 | MS.gene25673:CDS |
| CACACAGTGTATTACAGAAG+CGG | 0.604982 | 8.1:-6456998 | MS.gene25673:intron |
| AAGTATGGTCCAAAAGGCCA+AGG | 0.606114 | 8.1:-6455809 | MS.gene25673:CDS |
| GGAAGTATTTCAGGGCGAGA+AGG | 0.613916 | 8.1:-6454541 | MS.gene25673:CDS |
| AGGGCGAGAAGGCAAGAGAG+AGG | 0.620409 | 8.1:-6454530 | MS.gene25673:CDS |
| CATGCTGAAGGAAAGAAACA+CGG | 0.639025 | 8.1:-6454840 | MS.gene25673:CDS |
| CTGTCAAAGATGGCAAACAA+AGG | 0.639970 | 8.1:-6455757 | MS.gene25673:CDS |
| TAGCTTTCGTGCATTGACTG+TGG | 0.661020 | 8.1:-6457054 | MS.gene25673:CDS |
| GCCTGATGCAAAGGATGCAG+TGG | 0.663160 | 8.1:-6454757 | MS.gene25673:CDS |
| GAATGACACATCAGTTGACG+TGG | 0.669822 | 8.1:-6454571 | MS.gene25673:CDS |
| AAATGAAAATGAATTGAGCG+AGG | 0.672838 | 8.1:-6454172 | MS.gene25673:CDS |
| CTTCTGTAATACACTGTGTG+TGG | 0.673491 | 8.1:+6457001 | None:intergenic |
| GCTTAGCTGAACGTCCTCCG+TGG | 0.705410 | 8.1:-6455712 | MS.gene25673:CDS |
| AGTATATACCTACAGAACCA+CGG | 0.706642 | 8.1:+6455695 | None:intergenic |
| TGCTGAAGGAAAGAAACACG+GGG | 0.771538 | 8.1:-6454838 | MS.gene25673:CDS |
| ATATACCTACAGAACCACGG+AGG | 0.855057 | 8.1:+6455698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATCATTTATATTATTTTA+AGG | - | chr8.1:6455133-6455152 | MS.gene25673:intron | 10.0% |
| !!! | TTTTATGTAAATGTAAATAT+AGG | - | chr8.1:6455776-6455795 | MS.gene25673:CDS | 10.0% |
| !!! | TTTTTATTATAAAATAGTCT+CGG | + | chr8.1:6456217-6456236 | None:intergenic | 10.0% |
| !! | AATACATTTCTTAGTTTAAT+TGG | - | chr8.1:6456073-6456092 | MS.gene25673:intron | 15.0% |
| !! | AATATAAAAATTCATTATGC+TGG | + | chr8.1:6455261-6455280 | None:intergenic | 15.0% |
| !! | TGAATAATAAACTATCAATT+TGG | - | chr8.1:6454969-6454988 | MS.gene25673:intron | 15.0% |
| !! | TTATCTATATATGTTATAGT+GGG | - | chr8.1:6456786-6456805 | MS.gene25673:intron | 15.0% |
| !! | TTTATCTATATATGTTATAG+TGG | - | chr8.1:6456785-6456804 | MS.gene25673:intron | 15.0% |
| !!! | ATAATTAATGGACAAAAATA+AGG | + | chr8.1:6454254-6454273 | None:intergenic | 15.0% |
| !!! | CAATTTGTTTCAAAAAATAA+AGG | + | chr8.1:6455905-6455924 | None:intergenic | 15.0% |
| !!! | CTTTATTTTTTGAAACAAAT+TGG | - | chr8.1:6455903-6455922 | MS.gene25673:intron | 15.0% |
| !!! | TGATAGATTGATAATAATTT+AGG | + | chr8.1:6455058-6455077 | None:intergenic | 15.0% |
| !! | AAAAACAAATATTGGTAAAG+AGG | + | chr8.1:6456243-6456262 | None:intergenic | 20.0% |
| !! | AATTCAACATACAAATTTCA+AGG | + | chr8.1:6456736-6456755 | None:intergenic | 20.0% |
| !! | ATTCAACCATAAGTTAAAAA+AGG | + | chr8.1:6455822-6455841 | None:intergenic | 20.0% |
| !! | CACAATCGAAAATTATAAAA+AGG | + | chr8.1:6456151-6456170 | None:intergenic | 20.0% |
| !! | TAGATATTATTTCACTCTTA+TGG | - | chr8.1:6456267-6456286 | MS.gene25673:intron | 20.0% |
| !! | TCTAGAAGAAAAACAAATAT+TGG | + | chr8.1:6456251-6456270 | None:intergenic | 20.0% |
| !! | TGTTATATTTCAAAAGTTCA+GGG | - | chr8.1:6455161-6455180 | MS.gene25673:intron | 20.0% |
| !! | TTGTCCATTAATTATAGATT+AGG | - | chr8.1:6454259-6454278 | MS.gene25673:intron | 20.0% |
| !! | TTGTTATATTTCAAAAGTTC+AGG | - | chr8.1:6455160-6455179 | MS.gene25673:intron | 20.0% |
| !! | TTTCTGTGTAAATAAACTAT+GGG | - | chr8.1:6454655-6454674 | MS.gene25673:CDS | 20.0% |
| !!! | AATTTCATTTTCATAGTTCA+GGG | + | chr8.1:6455028-6455047 | None:intergenic | 20.0% |
| !!! | ATTTTTCCTCTTTTTCTTTT+CGG | + | chr8.1:6456583-6456602 | None:intergenic | 20.0% |
| !!! | GAAATTTGTATGTTGAATTT+TGG | - | chr8.1:6456737-6456756 | MS.gene25673:intron | 20.0% |
| !!! | TAATTTCATTTTCATAGTTC+AGG | + | chr8.1:6455029-6455048 | None:intergenic | 20.0% |
| !!! | TATCATTTTCTCTCATATTT+TGG | - | chr8.1:6455001-6455020 | MS.gene25673:intron | 20.0% |
| !!! | TTTTCTGTGTAAATAAACTA+TGG | - | chr8.1:6454654-6454673 | MS.gene25673:CDS | 20.0% |
| ! | AAATGATAGTCCTAAGTTAA+AGG | + | chr8.1:6454817-6454836 | None:intergenic | 25.0% |
| ! | AGAGAGAAACATAATTATCA+TGG | - | chr8.1:6455638-6455657 | MS.gene25673:intron | 25.0% |
| ! | ATAGAAGAGAGTGATAATTT+AGG | + | chr8.1:6455089-6455108 | None:intergenic | 25.0% |
| ! | ATGAGAGAAAATGATAGTTT+AGG | + | chr8.1:6454997-6455016 | None:intergenic | 25.0% |
| ! | ATTACAGCAGGAAAATTATA+TGG | + | chr8.1:6456918-6456937 | None:intergenic | 25.0% |
| ! | ATTATTTCACTCTTATGGTT+TGG | - | chr8.1:6456272-6456291 | MS.gene25673:intron | 25.0% |
| ! | GAAAAAAGTAAATAAAAGCG+CGG | + | chr8.1:6456129-6456148 | None:intergenic | 25.0% |
| ! | GAATGATATTAGTGTTAATC+AGG | - | chr8.1:6455968-6455987 | MS.gene25673:intron | 25.0% |
| ! | TAGAAGAGAGTGATAATTTA+GGG | + | chr8.1:6455088-6455107 | None:intergenic | 25.0% |
| ! | TAGAGAGCTAAATTCAAAAT+AGG | + | chr8.1:6454478-6454497 | None:intergenic | 25.0% |
| ! | TCAAATTAGTCATTCCAAAA+AGG | - | chr8.1:6454431-6454450 | MS.gene25673:intron | 25.0% |
| ! | TGAGAGAAAATGATAGTTTA+GGG | + | chr8.1:6454996-6455015 | None:intergenic | 25.0% |
| ! | TTACAGCAGGAAAATTATAT+GGG | + | chr8.1:6456917-6456936 | None:intergenic | 25.0% |
| ! | TTCTGTGTAAATAAACTATG+GGG | - | chr8.1:6454656-6454675 | MS.gene25673:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr8.1:6454287-6454306 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr8.1:6454286-6454305 | None:intergenic | 25.0% |
| !! | TTCAAAGTTTCCTTTAACTT+AGG | - | chr8.1:6454804-6454823 | MS.gene25673:CDS | 25.0% |
| !! | TTTTACATTAAACGTAAGCA+TGG | + | chr8.1:6455855-6455874 | None:intergenic | 25.0% |
| !!! | CTTCTATTTTGAAAGTAGTT+GGG | - | chr8.1:6455102-6455121 | MS.gene25673:intron | 25.0% |
| !!! | TAATCTGCTTATTGTTTTAC+TGG | - | chr8.1:6456934-6456953 | MS.gene25673:intron | 25.0% |
| !!! | TCTCTAAAATGAGAAAATCA+AGG | - | chr8.1:6454492-6454511 | MS.gene25673:CDS | 25.0% |
| !!! | TCTTCTATTTTGAAAGTAGT+TGG | - | chr8.1:6455101-6455120 | MS.gene25673:intron | 25.0% |
| !!! | TTCTATTTTGAAAGTAGTTG+GGG | - | chr8.1:6455103-6455122 | MS.gene25673:intron | 25.0% |
| !!! | TTGAAACAAATTGGTTTTTG+AGG | - | chr8.1:6455912-6455931 | MS.gene25673:intron | 25.0% |
| !!! | TTTACTCAATGCTATTTCTT+TGG | - | chr8.1:6454755-6454774 | MS.gene25673:CDS | 25.0% |
| AAATGAAAATGAATTGAGCG+AGG | - | chr8.1:6457037-6457056 | MS.gene25673:CDS | 30.0% | |
| AAATTGAGGATGGATATTAG+AGG | + | chr8.1:6454563-6454582 | None:intergenic | 30.0% | |
| AAGCTATATGAACATGTCAT+AGG | - | chr8.1:6454352-6454371 | MS.gene25673:intron | 30.0% | |
| ACTAATTTGAGCTTACTTAC+CGG | + | chr8.1:6454421-6454440 | None:intergenic | 30.0% | |
| AGGATGTTGAAAAATTAGCT+GGG | - | chr8.1:6455796-6455815 | MS.gene25673:CDS | 30.0% | |
| ATAAGTACTTGTAAGACTGT+TGG | + | chr8.1:6454397-6454416 | None:intergenic | 30.0% | |
| ATTGACTAACAAATTGAGGA+TGG | + | chr8.1:6454573-6454592 | None:intergenic | 30.0% | |
| CATGAACCGTAAGAAATAAT+AGG | + | chr8.1:6455722-6455741 | None:intergenic | 30.0% | |
| CTAGTCGTTGATATTAATGT+GGG | - | chr8.1:6455475-6455494 | MS.gene25673:intron | 30.0% | |
| CTTATGAAAACAGCTTATTG+TGG | + | chr8.1:6454335-6454354 | None:intergenic | 30.0% | |
| CTTATGGTTGAATTATGTAG+TGG | - | chr8.1:6455829-6455848 | MS.gene25673:intron | 30.0% | |
| GATAAAGCAGAAAACAAGAA+AGG | + | chr8.1:6456771-6456790 | None:intergenic | 30.0% | |
| GGGTCCTAATCTATAATTAA+TGG | + | chr8.1:6454266-6454285 | None:intergenic | 30.0% | |
| TAAGTACTTGTAAGACTGTT+GGG | + | chr8.1:6454396-6454415 | None:intergenic | 30.0% | |
| TACAGCAGGAAAATTATATG+GGG | + | chr8.1:6456916-6456935 | None:intergenic | 30.0% | |
| TAGGATGTTGAAAAATTAGC+TGG | - | chr8.1:6455795-6455814 | MS.gene25673:CDS | 30.0% | |
| TATAGTGATATAGAGATAGC+TGG | - | chr8.1:6456835-6456854 | MS.gene25673:intron | 30.0% | |
| TGAACAAAATAACCTGAAAC+CGG | - | chr8.1:6456542-6456561 | MS.gene25673:intron | 30.0% | |
| TGGACAAAAATAAGGCAAAA+AGG | + | chr8.1:6454246-6454265 | None:intergenic | 30.0% | |
| TTATCTGTTTATTCTGAGCA+TGG | - | chr8.1:6456812-6456831 | MS.gene25673:intron | 30.0% | |
| TTTCTTCCGAAAAGAAAAAG+AGG | - | chr8.1:6456574-6456593 | MS.gene25673:intron | 30.0% | |
| ! | AACCATTGACTAACAAATTG+AGG | + | chr8.1:6454577-6454596 | None:intergenic | 30.0% |
| ! | AGGAAAAATGAAGCATTAGA+GGG | - | chr8.1:6456594-6456613 | MS.gene25673:intron | 30.0% |
| ! | AGTCCTCCTATTATTTCTTA+CGG | - | chr8.1:6455713-6455732 | MS.gene25673:CDS | 30.0% |
| !! | ATCCTCAATTTGTTAGTCAA+TGG | - | chr8.1:6454572-6454591 | MS.gene25673:CDS | 30.0% |
| !! | GTGGTTTGAGTTTTGTAAAA+CGG | - | chr8.1:6454708-6454727 | MS.gene25673:CDS | 30.0% |
| !! | TCTATTTTGAAAGTAGTTGG+GGG | - | chr8.1:6455104-6455123 | MS.gene25673:intron | 30.0% |
| !! | TGGTTTGAGTTTTGTAAAAC+GGG | - | chr8.1:6454709-6454728 | MS.gene25673:CDS | 30.0% |
| !! | TTCGATTTTCAGGAAAAGTA+TGG | - | chr8.1:6455385-6455404 | MS.gene25673:intron | 30.0% |
| AACAATAAGCAGATTACAGC+AGG | + | chr8.1:6456930-6456949 | None:intergenic | 35.0% | |
| AAGTACTTGTAAGACTGTTG+GGG | + | chr8.1:6454395-6454414 | None:intergenic | 35.0% | |
| AATCAGGTAAGAGTCTAAAC+AGG | - | chr8.1:6455984-6456003 | MS.gene25673:intron | 35.0% | |
| AATGCCCTAAAGTAGTTAGA+AGG | + | chr8.1:6454884-6454903 | None:intergenic | 35.0% | |
| ACACTACAATATGCCGTTAT+TGG | + | chr8.1:6456194-6456213 | None:intergenic | 35.0% | |
| ACGGTTCATGCAATCATAAA+GGG | - | chr8.1:6455732-6455751 | MS.gene25673:CDS | 35.0% | |
| ACTCACCTTCTAACTACTTT+AGG | - | chr8.1:6454876-6454895 | MS.gene25673:CDS | 35.0% | |
| ACTTGAGAAGCTGAATTAAG+GGG | + | chr8.1:6454690-6454709 | None:intergenic | 35.0% | |
| AGTATATACCTACAGAACCA+CGG | + | chr8.1:6455517-6455536 | None:intergenic | 35.0% | |
| AGTCTTACAAGTACTTATGC+CGG | - | chr8.1:6454399-6454418 | MS.gene25673:intron | 35.0% | |
| CAAGAGAGAGGAAAATAAAG+TGG | - | chr8.1:6456691-6456710 | MS.gene25673:intron | 35.0% | |
| CACTTGAGAAGCTGAATTAA+GGG | + | chr8.1:6454691-6454710 | None:intergenic | 35.0% | |
| CCTCGTATCATTACAATCAT+GGG | - | chr8.1:6454840-6454859 | MS.gene25673:CDS | 35.0% | |
| CTAATACAGTGCAGTCAATT+TGG | + | chr8.1:6455217-6455236 | None:intergenic | 35.0% | |
| CTCACCTTCTAACTACTTTA+GGG | - | chr8.1:6454877-6454896 | MS.gene25673:CDS | 35.0% | |
| CTCGTATCATTACAATCATG+GGG | - | chr8.1:6454841-6454860 | MS.gene25673:CDS | 35.0% | |
| GAACCGTAAGAAATAATAGG+AGG | + | chr8.1:6455719-6455738 | None:intergenic | 35.0% | |
| GCTAGTCGTTGATATTAATG+TGG | - | chr8.1:6455474-6455493 | MS.gene25673:intron | 35.0% | |
| TACGGTTCATGCAATCATAA+AGG | - | chr8.1:6455731-6455750 | MS.gene25673:CDS | 35.0% | |
| TCCTCGTATCATTACAATCA+TGG | - | chr8.1:6454839-6454858 | MS.gene25673:CDS | 35.0% | |
| TGGTAAGTGTTTGTGCTATA+AGG | + | chr8.1:6454315-6454334 | None:intergenic | 35.0% | |
| TTATAGATTAGGACCCTGTT+TGG | - | chr8.1:6454270-6454289 | MS.gene25673:intron | 35.0% | |
| TTCTTCATCTTCAATCCATC+AGG | + | chr8.1:6456969-6456988 | None:intergenic | 35.0% | |
| ! | AAATTATCTGTCTGGACTAG+TGG | + | chr8.1:6456429-6456448 | None:intergenic | 35.0% |
| ! | CAGCATTCAAAGTTTTTCCT+TGG | + | chr8.1:6455420-6455439 | None:intergenic | 35.0% |
| ! | CTCATTTTGCTTCGATTTTC+AGG | - | chr8.1:6455375-6455394 | MS.gene25673:intron | 35.0% |
| ! | GAGGAAAAATGAAGCATTAG+AGG | - | chr8.1:6456593-6456612 | MS.gene25673:intron | 35.0% |
| !! | AAAGTTTTTCCTTGGCCTTT+TGG | + | chr8.1:6455412-6455431 | None:intergenic | 35.0% |
| !! | GAAAATGGGGAAGTATTTCA+GGG | - | chr8.1:6456660-6456679 | MS.gene25673:intron | 35.0% |
| !! | TCTGCTTATTGTTTTACTGG+TGG | - | chr8.1:6456937-6456956 | MS.gene25673:intron | 35.0% |
| !!! | TTCTTTGGTTTTCCTCAATG+TGG | - | chr8.1:6454770-6454789 | MS.gene25673:CDS | 35.0% |
| AACTATGACTCTCTCCGATT+TGG | + | chr8.1:6455188-6455207 | None:intergenic | 40.0% | |
| ACATCAGTTGACGTGGAAAA+TGG | - | chr8.1:6456645-6456664 | MS.gene25673:intron | 40.0% | |
| AGCGATTTACTCACTTCTAG+AGG | - | chr8.1:6454616-6454635 | MS.gene25673:CDS | 40.0% | |
| AGGTTCAAGTGTAACAACCT+AGG | + | chr8.1:6454458-6454477 | None:intergenic | 40.0% | |
| ATCAGTTGACGTGGAAAATG+GGG | - | chr8.1:6456647-6456666 | MS.gene25673:intron | 40.0% | |
| ATGCTGAAGGAAAGAAACAC+GGG | - | chr8.1:6456370-6456389 | MS.gene25673:intron | 40.0% | |
| ATTGACTGTGGACAGATGTT+TGG | - | chr8.1:6454167-6454186 | MS.gene25673:CDS | 40.0% | |
| CAAAAGTTCAGGGACCAAAT+CGG | - | chr8.1:6455171-6455190 | MS.gene25673:intron | 40.0% | |
| CACACAGTGTATTACAGAAG+CGG | - | chr8.1:6454211-6454230 | MS.gene25673:CDS | 40.0% | |
| CATCAGTTGACGTGGAAAAT+GGG | - | chr8.1:6456646-6456665 | MS.gene25673:intron | 40.0% | |
| CATGCTGAAGGAAAGAAACA+CGG | - | chr8.1:6456369-6456388 | MS.gene25673:intron | 40.0% | |
| CATGGTCTACATATCCTGTT+CGG | - | chr8.1:6455656-6455675 | MS.gene25673:intron | 40.0% | |
| CCACTTGAGAAGCTGAATTA+AGG | + | chr8.1:6454692-6454711 | None:intergenic | 40.0% | |
| CCCATGATTGTAATGATACG+AGG | + | chr8.1:6454843-6454862 | None:intergenic | 40.0% | |
| CCTTAATTCAGCTTCTCAAG+TGG | - | chr8.1:6454689-6454708 | MS.gene25673:CDS | 40.0% | |
| CGGTTCATGCAATCATAAAG+GGG | - | chr8.1:6455733-6455752 | MS.gene25673:CDS | 40.0% | |
| CTGTCAAAGATGGCAAACAA+AGG | - | chr8.1:6455452-6455471 | MS.gene25673:intron | 40.0% | |
| CTTCTGTAATACACTGTGTG+TGG | + | chr8.1:6454211-6454230 | None:intergenic | 40.0% | |
| CTTGAGAAGCTGAATTAAGG+GGG | + | chr8.1:6454689-6454708 | None:intergenic | 40.0% | |
| GGCATTCTAGTATCTACTGA+AGG | - | chr8.1:6454898-6454917 | MS.gene25673:intron | 40.0% | |
| GGTTCAAGTGTAACAACCTA+GGG | + | chr8.1:6454457-6454476 | None:intergenic | 40.0% | |
| GGTTCATGCAATCATAAAGG+GGG | - | chr8.1:6455734-6455753 | MS.gene25673:CDS | 40.0% | |
| TCGGAAGAAACTTCATTCAC+CGG | + | chr8.1:6456564-6456583 | None:intergenic | 40.0% | |
| TCGGAGAGAGTCATAGTTTA+AGG | - | chr8.1:6455190-6455209 | MS.gene25673:intron | 40.0% | |
| TCTACATATCCTGTTCGGAT+GGG | - | chr8.1:6455661-6455680 | MS.gene25673:intron | 40.0% | |
| TGAGTGTCAACTGCCAATAA+CGG | - | chr8.1:6456178-6456197 | MS.gene25673:intron | 40.0% | |
| TTGACTGCACTGTATTAGTC+TGG | - | chr8.1:6455219-6455238 | MS.gene25673:intron | 40.0% | |
| TTGAGAAGCTGAATTAAGGG+GGG | + | chr8.1:6454688-6454707 | None:intergenic | 40.0% | |
| ! | CAGGAAAAGTATGGTCCAAA+AGG | - | chr8.1:6455394-6455413 | MS.gene25673:intron | 40.0% |
| ! | CTTTGTTTGCCATCTTTGAC+AGG | + | chr8.1:6455454-6455473 | None:intergenic | 40.0% |
| ! | GAGATAGCTGGTGACTTTTA+AGG | - | chr8.1:6456847-6456866 | MS.gene25673:intron | 40.0% |
| ! | TAATTTTGCGCCTGATGCAA+AGG | - | chr8.1:6456443-6456462 | MS.gene25673:intron | 40.0% |
| !! | AAACTTCATTCACCGGTTTC+AGG | + | chr8.1:6456557-6456576 | None:intergenic | 40.0% |
| !! | GGAAAATGGGGAAGTATTTC+AGG | - | chr8.1:6456659-6456678 | MS.gene25673:intron | 40.0% |
| !!! | GCTGGGCCTTTTTTAACTTA+TGG | - | chr8.1:6455813-6455832 | MS.gene25673:CDS | 40.0% |
| AAACGGGTACCTATCTGTTG+TGG | - | chr8.1:6454725-6454744 | MS.gene25673:CDS | 45.0% | |
| AACGGGTACCTATCTGTTGT+GGG | - | chr8.1:6454726-6454745 | MS.gene25673:CDS | 45.0% | |
| AACTCCATCCCACAACAGAT+AGG | + | chr8.1:6454737-6454756 | None:intergenic | 45.0% | |
| AAGTATGGTCCAAAAGGCCA+AGG | - | chr8.1:6455400-6455419 | MS.gene25673:intron | 45.0% | |
| ACAAGATCCTAGCCACATTG+AGG | + | chr8.1:6454785-6454804 | None:intergenic | 45.0% | |
| AGTCATTCCAAAAAGGCCCT+AGG | - | chr8.1:6454438-6454457 | MS.gene25673:intron | 45.0% | |
| ATATACCTACAGAACCACGG+AGG | + | chr8.1:6455514-6455533 | None:intergenic | 45.0% | |
| ATCCTGTTCGGATGGGAATT+GGG | - | chr8.1:6455668-6455687 | MS.gene25673:intron | 45.0% | |
| CAGGCGCAAAATTATCTGTC+TGG | + | chr8.1:6456437-6456456 | None:intergenic | 45.0% | |
| GAATGACACATCAGTTGACG+TGG | - | chr8.1:6456638-6456657 | MS.gene25673:intron | 45.0% | |
| GCACTTCTTCTACATGCTGA+AGG | - | chr8.1:6456357-6456376 | MS.gene25673:intron | 45.0% | |
| GTCTACATATCCTGTTCGGA+TGG | - | chr8.1:6455660-6455679 | MS.gene25673:intron | 45.0% | |
| TAGATTCCTGCAGTGCTTTG+AGG | + | chr8.1:6457007-6457026 | None:intergenic | 45.0% | |
| TATCCTGTTCGGATGGGAAT+TGG | - | chr8.1:6455667-6455686 | MS.gene25673:intron | 45.0% | |
| TCAGAAGACTCGTGCAACTT+TGG | + | chr8.1:6456525-6456544 | None:intergenic | 45.0% | |
| TGCAAGTCTCTTGTGGATCA+AGG | - | chr8.1:6456016-6456035 | MS.gene25673:intron | 45.0% | |
| TGCTGAAGGAAAGAAACACG+GGG | - | chr8.1:6456371-6456390 | MS.gene25673:intron | 45.0% | |
| TTGATCCACAAGAGACTTGC+AGG | + | chr8.1:6456017-6456036 | None:intergenic | 45.0% | |
| TTTGCCATCTTTGACAGGCT+TGG | + | chr8.1:6455449-6455468 | None:intergenic | 45.0% | |
| ! | ATTAGCCTGCAAGTCTCTTG+TGG | - | chr8.1:6456009-6456028 | MS.gene25673:intron | 45.0% |
| ! | GGAGACGGGTTCTAATGATA+TGG | - | chr8.1:6456473-6456492 | MS.gene25673:intron | 45.0% |
| ! | GTAACAACCTAGGGCCTTTT+TGG | + | chr8.1:6454448-6454467 | None:intergenic | 45.0% |
| ! | TACTCACTTCTAGAGGAGTC+TGG | - | chr8.1:6454623-6454642 | MS.gene25673:CDS | 45.0% |
| ! | TGGTTTTCCTCAATGTGGCT+AGG | - | chr8.1:6454775-6454794 | MS.gene25673:CDS | 45.0% |
| CATGCAATCATAAAGGGGGC+AGG | - | chr8.1:6455738-6455757 | MS.gene25673:CDS | 50.0% | |
| CTAGTGGTTGCTTCGAAGCA+TGG | + | chr8.1:6456413-6456432 | None:intergenic | 50.0% | |
| GGTACCTATCTGTTGTGGGA+TGG | - | chr8.1:6454730-6454749 | MS.gene25673:CDS | 50.0% | |
| TCCACTGCATCCTTTGCATC+AGG | + | chr8.1:6456456-6456475 | None:intergenic | 50.0% | |
| TGCAAAGGATGCAGTGGAGA+CGG | - | chr8.1:6456458-6456477 | MS.gene25673:intron | 50.0% | |
| !! | AGTTGTCCTCAAAGCACTGC+AGG | - | chr8.1:6456998-6457017 | MS.gene25673:intron | 50.0% |
| !! | GGAAGTATTTCAGGGCGAGA+AGG | - | chr8.1:6456668-6456687 | MS.gene25673:intron | 50.0% |
| AGCCCAATTCCCATCCGAAC+AGG | + | chr8.1:6455673-6455692 | None:intergenic | 55.0% | |
| CTTCGAAGCATGGAACGCTC+GGG | + | chr8.1:6456403-6456422 | None:intergenic | 55.0% | |
| GCAAAGGATGCAGTGGAGAC+GGG | - | chr8.1:6456459-6456478 | MS.gene25673:intron | 55.0% | |
| GCCTGATGCAAAGGATGCAG+TGG | - | chr8.1:6456452-6456471 | MS.gene25673:intron | 55.0% | |
| GCTGCCAAGCCTGTCAAAGA+TGG | - | chr8.1:6455442-6455461 | MS.gene25673:intron | 55.0% | |
| GCTTCGAAGCATGGAACGCT+CGG | + | chr8.1:6456404-6456423 | None:intergenic | 55.0% | |
| TACTGGTGGCAGCATCCTGA+TGG | - | chr8.1:6456951-6456970 | MS.gene25673:intron | 55.0% | |
| ! | AACGTCCTCCGTGGTTCTGT+AGG | - | chr8.1:6455506-6455525 | MS.gene25673:intron | 55.0% |
| AGGGCGAGAAGGCAAGAGAG+AGG | - | chr8.1:6456679-6456698 | MS.gene25673:intron | 60.0% | |
| GCTTAGCTGAACGTCCTCCG+TGG | - | chr8.1:6455497-6455516 | MS.gene25673:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6454158 | 6457073 | 6454158 | ID=MS.gene25673 |
| chr8.1 | mRNA | 6454158 | 6457073 | 6454158 | ID=MS.gene25673.t1;Parent=MS.gene25673 |
| chr8.1 | exon | 6456999 | 6457073 | 6456999 | ID=MS.gene25673.t1.exon1;Parent=MS.gene25673.t1 |
| chr8.1 | CDS | 6456999 | 6457073 | 6456999 | ID=cds.MS.gene25673.t1;Parent=MS.gene25673.t1 |
| chr8.1 | exon | 6455704 | 6455834 | 6455704 | ID=MS.gene25673.t1.exon2;Parent=MS.gene25673.t1 |
| chr8.1 | CDS | 6455704 | 6455834 | 6455704 | ID=cds.MS.gene25673.t1;Parent=MS.gene25673.t1 |
| chr8.1 | exon | 6454488 | 6454905 | 6454488 | ID=MS.gene25673.t1.exon3;Parent=MS.gene25673.t1 |
| chr8.1 | CDS | 6454488 | 6454905 | 6454488 | ID=cds.MS.gene25673.t1;Parent=MS.gene25673.t1 |
| chr8.1 | exon | 6454158 | 6454268 | 6454158 | ID=MS.gene25673.t1.exon4;Parent=MS.gene25673.t1 |
| chr8.1 | CDS | 6454158 | 6454268 | 6454158 | ID=cds.MS.gene25673.t1;Parent=MS.gene25673.t1 |
| Gene Sequence |
| Protein sequence |
