Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28111.t1 | XP_003630068.1 | 97.2 | 321 | 9 | 0 | 1 | 321 | 257 | 577 | 6.30E-186 | 659.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28111.t1 | Q40588 | 53.3 | 319 | 145 | 4 | 3 | 321 | 261 | 575 | 4.9e-94 | 345.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28111.t1 | G7LAE5 | 97.2 | 321 | 9 | 0 | 1 | 321 | 257 | 577 | 4.5e-186 | 659.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049259 | MS.gene28111 | 0.808949 | 2.41E-50 | -1.69E-46 |
MS.gene049710 | MS.gene28111 | 0.811422 | 7.06E-51 | -1.69E-46 |
MS.gene05015 | MS.gene28111 | 0.837608 | 4.70E-57 | -1.69E-46 |
MS.gene050173 | MS.gene28111 | 0.80399 | 2.68E-49 | -1.69E-46 |
MS.gene050363 | MS.gene28111 | 0.837499 | 5.01E-57 | -1.69E-46 |
MS.gene050381 | MS.gene28111 | 0.866238 | 3.30E-65 | -1.69E-46 |
MS.gene050612 | MS.gene28111 | -0.818076 | 2.37E-52 | -1.69E-46 |
MS.gene050883 | MS.gene28111 | 0.85315 | 2.89E-61 | -1.69E-46 |
MS.gene051044 | MS.gene28111 | 0.845279 | 4.49E-59 | -1.69E-46 |
MS.gene051127 | MS.gene28111 | 0.828332 | 9.54E-55 | -1.69E-46 |
MS.gene051138 | MS.gene28111 | 0.845862 | 3.12E-59 | -1.69E-46 |
MS.gene051946 | MS.gene28111 | 0.810684 | 1.02E-50 | -1.69E-46 |
MS.gene052802 | MS.gene28111 | 0.820855 | 5.50E-53 | -1.69E-46 |
MS.gene053420 | MS.gene28111 | 0.801487 | 8.80E-49 | -1.69E-46 |
MS.gene053488 | MS.gene28111 | 0.822933 | 1.82E-53 | -1.69E-46 |
MS.gene053561 | MS.gene28111 | 0.865553 | 5.43E-65 | -1.69E-46 |
MS.gene054054 | MS.gene28111 | 0.816028 | 6.83E-52 | -1.69E-46 |
MS.gene054056 | MS.gene28111 | 0.848027 | 7.96E-60 | -1.69E-46 |
MS.gene054708 | MS.gene28111 | 0.815069 | 1.12E-51 | -1.69E-46 |
MS.gene055124 | MS.gene28111 | 0.832176 | 1.10E-55 | -1.69E-46 |
MS.gene055154 | MS.gene28111 | 0.854641 | 1.08E-61 | -1.69E-46 |
MS.gene055202 | MS.gene28111 | 0.800962 | 1.13E-48 | -1.69E-46 |
MS.gene055549 | MS.gene28111 | 0.822091 | 2.85E-53 | -1.69E-46 |
MS.gene055550 | MS.gene28111 | 0.823883 | 1.09E-53 | -1.69E-46 |
MS.gene055942 | MS.gene28111 | 0.853375 | 2.49E-61 | -1.69E-46 |
MS.gene056310 | MS.gene28111 | 0.82418 | 9.28E-54 | -1.69E-46 |
MS.gene056311 | MS.gene28111 | 0.830831 | 2.35E-55 | -1.69E-46 |
MS.gene056313 | MS.gene28111 | 0.819339 | 1.22E-52 | -1.69E-46 |
MS.gene057014 | MS.gene28111 | 0.825895 | 3.65E-54 | -1.69E-46 |
MS.gene058068 | MS.gene28111 | 0.801668 | 8.08E-49 | -1.69E-46 |
MS.gene058093 | MS.gene28111 | 0.807064 | 6.07E-50 | -1.69E-46 |
MS.gene058099 | MS.gene28111 | 0.846497 | 2.09E-59 | -1.69E-46 |
MS.gene058109 | MS.gene28111 | 0.826053 | 3.35E-54 | -1.69E-46 |
MS.gene058171 | MS.gene28111 | 0.829462 | 5.08E-55 | -1.69E-46 |
MS.gene058173 | MS.gene28111 | 0.819693 | 1.02E-52 | -1.69E-46 |
MS.gene058175 | MS.gene28111 | 0.828905 | 6.93E-55 | -1.69E-46 |
MS.gene058493 | MS.gene28111 | 0.815646 | 8.31E-52 | -1.69E-46 |
MS.gene058628 | MS.gene28111 | 0.843421 | 1.42E-58 | -1.69E-46 |
MS.gene058629 | MS.gene28111 | 0.835158 | 1.97E-56 | -1.69E-46 |
MS.gene058630 | MS.gene28111 | 0.837149 | 6.16E-57 | -1.69E-46 |
MS.gene058840 | MS.gene28111 | 0.824855 | 6.44E-54 | -1.69E-46 |
MS.gene059037 | MS.gene28111 | 0.802782 | 4.77E-49 | -1.69E-46 |
MS.gene059045 | MS.gene28111 | 0.825709 | 4.04E-54 | -1.69E-46 |
MS.gene059690 | MS.gene28111 | 0.978557 | 4.49E-146 | -1.69E-46 |
MS.gene059691 | MS.gene28111 | 0.936304 | 2.15E-97 | -1.69E-46 |
MS.gene059694 | MS.gene28111 | 0.982707 | 8.66E-156 | -1.69E-46 |
MS.gene059697 | MS.gene28111 | 0.969219 | 8.40E-130 | -1.69E-46 |
MS.gene059865 | MS.gene28111 | -0.817057 | 4.02E-52 | -1.69E-46 |
MS.gene059916 | MS.gene28111 | 0.837303 | 5.63E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28111.t1 | MTR_8g091390 | 98.442 | 321 | 5 | 0 | 1 | 321 | 257 | 577 | 0.0 | 658 |
MS.gene28111.t1 | MTR_3g078700 | 48.408 | 314 | 160 | 2 | 1 | 314 | 227 | 538 | 4.52e-106 | 320 |
MS.gene28111.t1 | MTR_3g078730 | 49.216 | 319 | 159 | 3 | 1 | 318 | 226 | 542 | 1.82e-105 | 319 |
MS.gene28111.t1 | MTR_3g078740 | 46.491 | 342 | 155 | 6 | 1 | 318 | 254 | 591 | 2.11e-100 | 307 |
MS.gene28111.t1 | MTR_5g020600 | 35.987 | 314 | 176 | 9 | 1 | 297 | 244 | 549 | 3.83e-47 | 167 |
MS.gene28111.t1 | MTR_5g020620 | 34.528 | 307 | 181 | 6 | 1 | 294 | 240 | 539 | 3.22e-45 | 162 |
MS.gene28111.t1 | MTR_5g081810 | 33.226 | 310 | 181 | 8 | 1 | 294 | 208 | 507 | 2.91e-41 | 150 |
MS.gene28111.t1 | MTR_5g069680 | 34.194 | 310 | 178 | 9 | 1 | 294 | 237 | 536 | 3.48e-40 | 148 |
MS.gene28111.t1 | MTR_3g462760 | 32.907 | 313 | 177 | 9 | 1 | 294 | 236 | 534 | 4.01e-40 | 148 |
MS.gene28111.t1 | MTR_7g062250 | 33.235 | 340 | 193 | 12 | 1 | 311 | 244 | 578 | 3.22e-39 | 145 |
MS.gene28111.t1 | MTR_5g083360 | 30.882 | 340 | 200 | 10 | 1 | 311 | 234 | 567 | 1.61e-38 | 143 |
MS.gene28111.t1 | MTR_7g458880 | 31.627 | 332 | 186 | 11 | 4 | 305 | 246 | 566 | 2.10e-38 | 143 |
MS.gene28111.t1 | MTR_2g008330 | 32.177 | 317 | 185 | 7 | 1 | 294 | 248 | 557 | 7.18e-38 | 142 |
MS.gene28111.t1 | MTR_7g060460 | 32.733 | 333 | 188 | 11 | 1 | 305 | 243 | 567 | 7.92e-38 | 142 |
MS.gene28111.t1 | MTR_8g027375 | 33.013 | 312 | 185 | 8 | 1 | 294 | 244 | 549 | 4.69e-37 | 139 |
MS.gene28111.t1 | MTR_7g058690 | 31.325 | 332 | 193 | 11 | 1 | 305 | 243 | 566 | 4.78e-37 | 139 |
MS.gene28111.t1 | MTR_3g101640 | 32.399 | 321 | 179 | 13 | 1 | 294 | 240 | 549 | 4.34e-35 | 134 |
MS.gene28111.t1 | MTR_7g062310 | 30.973 | 339 | 189 | 12 | 1 | 305 | 257 | 584 | 7.28e-35 | 134 |
MS.gene28111.t1 | MTR_5g073210 | 32.822 | 326 | 186 | 9 | 4 | 308 | 238 | 551 | 2.72e-34 | 132 |
MS.gene28111.t1 | MTR_4g015120 | 41.615 | 161 | 90 | 2 | 134 | 294 | 379 | 535 | 1.71e-33 | 129 |
MS.gene28111.t1 | MTR_3g101635 | 31.861 | 317 | 184 | 11 | 1 | 294 | 237 | 544 | 4.57e-32 | 125 |
MS.gene28111.t1 | MTR_7g065980 | 28.783 | 337 | 206 | 9 | 1 | 310 | 233 | 562 | 8.09e-32 | 125 |
MS.gene28111.t1 | MTR_4g064530 | 31.595 | 326 | 195 | 11 | 1 | 305 | 253 | 571 | 5.43e-31 | 122 |
MS.gene28111.t1 | MTR_3g079660 | 50.000 | 96 | 47 | 1 | 226 | 320 | 5 | 100 | 7.82e-31 | 112 |
MS.gene28111.t1 | MTR_4g019225 | 29.664 | 327 | 187 | 11 | 1 | 295 | 236 | 551 | 2.53e-30 | 120 |
MS.gene28111.t1 | MTR_7g065970 | 29.102 | 323 | 194 | 9 | 1 | 295 | 234 | 549 | 5.24e-30 | 120 |
MS.gene28111.t1 | MTR_3g071890 | 29.841 | 315 | 185 | 11 | 1 | 291 | 243 | 545 | 1.36e-28 | 115 |
MS.gene28111.t1 | MTR_8g479390 | 28.228 | 333 | 198 | 11 | 1 | 316 | 230 | 538 | 2.31e-27 | 112 |
MS.gene28111.t1 | MTR_5g081790 | 40.385 | 156 | 84 | 3 | 134 | 286 | 283 | 432 | 4.46e-27 | 110 |
MS.gene28111.t1 | MTR_5g018270 | 26.807 | 332 | 201 | 9 | 1 | 316 | 230 | 535 | 1.75e-26 | 109 |
MS.gene28111.t1 | MTR_4g064530 | 30.392 | 306 | 178 | 12 | 1 | 280 | 253 | 549 | 5.39e-24 | 102 |
MS.gene28111.t1 | MTR_1g090707 | 26.946 | 334 | 197 | 11 | 1 | 313 | 231 | 538 | 9.51e-24 | 102 |
MS.gene28111.t1 | MTR_4g075690 | 24.850 | 334 | 207 | 9 | 1 | 316 | 230 | 537 | 4.16e-22 | 97.1 |
MS.gene28111.t1 | MTR_3g008580 | 23.952 | 334 | 215 | 7 | 1 | 315 | 242 | 555 | 6.49e-22 | 96.7 |
MS.gene28111.t1 | MTR_4g132320 | 26.471 | 340 | 194 | 12 | 1 | 316 | 232 | 539 | 4.33e-21 | 94.0 |
MS.gene28111.t1 | MTR_4g048350 | 26.126 | 333 | 204 | 9 | 1 | 316 | 227 | 534 | 1.33e-20 | 92.4 |
MS.gene28111.t1 | MTR_4g049390 | 26.331 | 338 | 197 | 9 | 1 | 316 | 228 | 535 | 4.17e-20 | 91.3 |
MS.gene28111.t1 | MTR_3g083450 | 26.126 | 333 | 204 | 10 | 1 | 315 | 232 | 540 | 7.56e-20 | 90.5 |
MS.gene28111.t1 | MTR_3g083410 | 25.526 | 333 | 206 | 10 | 1 | 315 | 195 | 503 | 8.12e-20 | 90.1 |
MS.gene28111.t1 | MTR_3g083440 | 26.126 | 333 | 204 | 10 | 1 | 315 | 231 | 539 | 8.69e-20 | 90.1 |
MS.gene28111.t1 | MTR_3g083390 | 26.126 | 333 | 204 | 10 | 1 | 315 | 231 | 539 | 1.34e-19 | 89.7 |
MS.gene28111.t1 | MTR_8g479380 | 24.551 | 334 | 206 | 10 | 1 | 315 | 229 | 535 | 1.42e-19 | 89.7 |
MS.gene28111.t1 | MTR_2g088080 | 24.852 | 338 | 202 | 7 | 1 | 316 | 150 | 457 | 1.63e-19 | 89.0 |
MS.gene28111.t1 | MTR_3g083400 | 26.126 | 333 | 204 | 10 | 1 | 315 | 231 | 539 | 2.23e-19 | 89.0 |
MS.gene28111.t1 | MTR_2g088080 | 24.852 | 338 | 202 | 7 | 1 | 316 | 231 | 538 | 2.57e-19 | 89.0 |
MS.gene28111.t1 | MTR_3g115050 | 22.287 | 341 | 207 | 10 | 1 | 316 | 231 | 538 | 8.33e-19 | 87.4 |
MS.gene28111.t1 | MTR_7g051440 | 25.836 | 329 | 206 | 9 | 1 | 312 | 242 | 549 | 8.55e-19 | 87.4 |
MS.gene28111.t1 | MTR_3g083430 | 25.826 | 333 | 205 | 10 | 1 | 315 | 231 | 539 | 1.66e-18 | 86.3 |
MS.gene28111.t1 | MTR_1g026410 | 24.340 | 341 | 200 | 10 | 1 | 316 | 230 | 537 | 2.06e-17 | 83.2 |
MS.gene28111.t1 | MTR_4g083210 | 25.904 | 332 | 206 | 10 | 1 | 315 | 227 | 535 | 2.20e-17 | 83.2 |
MS.gene28111.t1 | MTR_4g101650 | 26.506 | 332 | 205 | 11 | 1 | 313 | 240 | 551 | 1.21e-16 | 80.9 |
MS.gene28111.t1 | MTR_4g083190 | 22.630 | 327 | 223 | 7 | 1 | 315 | 233 | 541 | 1.54e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28111.t1 | AT4G39830 | 67.610 | 318 | 100 | 2 | 1 | 315 | 156 | 473 | 2.26e-161 | 459 |
MS.gene28111.t1 | AT4G39830 | 67.610 | 318 | 100 | 2 | 1 | 315 | 167 | 484 | 4.15e-161 | 458 |
MS.gene28111.t1 | AT4G39830 | 67.610 | 318 | 100 | 2 | 1 | 315 | 169 | 486 | 5.12e-161 | 458 |
MS.gene28111.t1 | AT4G39830 | 67.610 | 318 | 100 | 2 | 1 | 315 | 264 | 581 | 4.08e-160 | 459 |
MS.gene28111.t1 | AT5G21105 | 50.629 | 318 | 155 | 2 | 1 | 318 | 76 | 391 | 2.01e-110 | 327 |
MS.gene28111.t1 | AT5G21105 | 50.629 | 318 | 155 | 2 | 1 | 318 | 267 | 582 | 8.19e-108 | 326 |
MS.gene28111.t1 | AT5G21100 | 48.125 | 320 | 162 | 3 | 1 | 318 | 250 | 567 | 4.06e-102 | 311 |
MS.gene28111.t1 | AT5G21105 | 48.540 | 274 | 139 | 2 | 1 | 274 | 267 | 538 | 3.35e-82 | 259 |
MS.gene28111.t1 | AT5G58910 | 33.968 | 315 | 178 | 9 | 1 | 294 | 196 | 501 | 7.69e-43 | 155 |
MS.gene28111.t1 | AT5G58910 | 33.968 | 315 | 178 | 9 | 1 | 294 | 240 | 545 | 1.19e-42 | 155 |
MS.gene28111.t1 | AT5G58910 | 33.968 | 315 | 178 | 9 | 1 | 294 | 239 | 544 | 1.24e-42 | 155 |
MS.gene28111.t1 | AT2G38080 | 34.426 | 305 | 185 | 6 | 1 | 294 | 236 | 536 | 1.14e-40 | 149 |
MS.gene28111.t1 | AT5G05390 | 32.588 | 313 | 180 | 11 | 4 | 294 | 240 | 543 | 3.35e-40 | 148 |
MS.gene28111.t1 | AT1G18140 | 31.361 | 338 | 192 | 11 | 4 | 309 | 242 | 571 | 5.68e-39 | 145 |
MS.gene28111.t1 | AT5G03260 | 42.857 | 161 | 89 | 1 | 134 | 294 | 378 | 535 | 1.18e-37 | 141 |
MS.gene28111.t1 | AT5G01050 | 29.080 | 337 | 200 | 11 | 1 | 306 | 232 | 560 | 1.47e-36 | 138 |
MS.gene28111.t1 | AT5G60020 | 32.087 | 321 | 177 | 11 | 4 | 290 | 238 | 551 | 4.63e-36 | 137 |
MS.gene28111.t1 | AT5G60020 | 32.087 | 321 | 177 | 11 | 4 | 290 | 206 | 519 | 5.19e-36 | 136 |
MS.gene28111.t1 | AT5G01190 | 31.629 | 313 | 184 | 8 | 1 | 294 | 235 | 536 | 3.74e-35 | 134 |
MS.gene28111.t1 | AT5G01190 | 31.629 | 313 | 184 | 8 | 1 | 294 | 221 | 522 | 4.07e-35 | 134 |
MS.gene28111.t1 | AT2G46570 | 30.990 | 313 | 184 | 10 | 4 | 294 | 160 | 462 | 8.55e-35 | 132 |
MS.gene28111.t1 | AT2G46570 | 30.990 | 313 | 184 | 10 | 4 | 294 | 245 | 547 | 1.69e-34 | 132 |
MS.gene28111.t1 | AT2G29130 | 30.794 | 315 | 186 | 9 | 1 | 290 | 240 | 547 | 3.06e-34 | 132 |
MS.gene28111.t1 | AT5G07130 | 29.825 | 342 | 195 | 12 | 4 | 311 | 154 | 484 | 9.81e-34 | 129 |
MS.gene28111.t1 | AT5G07130 | 29.825 | 342 | 195 | 12 | 4 | 311 | 154 | 484 | 9.81e-34 | 129 |
MS.gene28111.t1 | AT5G07130 | 29.825 | 342 | 195 | 12 | 4 | 311 | 239 | 569 | 1.90e-33 | 129 |
MS.gene28111.t1 | AT3G09220 | 30.794 | 315 | 192 | 11 | 1 | 294 | 139 | 448 | 2.68e-33 | 128 |
MS.gene28111.t1 | AT5G48100 | 31.562 | 320 | 183 | 14 | 1 | 294 | 232 | 541 | 3.08e-33 | 129 |
MS.gene28111.t1 | AT3G09220 | 30.794 | 315 | 192 | 11 | 1 | 294 | 236 | 545 | 5.82e-33 | 128 |
MS.gene28111.t1 | AT5G09360 | 32.121 | 330 | 186 | 13 | 1 | 309 | 247 | 559 | 5.84e-33 | 128 |
MS.gene28111.t1 | AT2G40370 | 28.923 | 325 | 189 | 9 | 4 | 294 | 242 | 558 | 5.81e-32 | 125 |
MS.gene28111.t1 | AT5G01040 | 29.063 | 320 | 188 | 12 | 4 | 294 | 235 | 544 | 1.27e-31 | 124 |
MS.gene28111.t1 | AT2G30210 | 30.794 | 315 | 187 | 10 | 4 | 294 | 241 | 548 | 1.92e-30 | 121 |
MS.gene28111.t1 | AT5G60020 | 31.148 | 305 | 169 | 11 | 4 | 274 | 238 | 535 | 5.63e-29 | 117 |
MS.gene28111.t1 | AT2G23630 | 27.679 | 336 | 193 | 11 | 1 | 315 | 235 | 541 | 1.15e-26 | 110 |
MS.gene28111.t1 | AT2G23630 | 27.679 | 336 | 193 | 11 | 1 | 315 | 230 | 536 | 1.36e-26 | 110 |
MS.gene28111.t1 | AT5G66920 | 26.444 | 329 | 208 | 7 | 1 | 316 | 236 | 543 | 4.34e-26 | 108 |
MS.gene28111.t1 | AT1G75790 | 27.778 | 342 | 196 | 13 | 1 | 315 | 228 | 545 | 9.70e-24 | 102 |
MS.gene28111.t1 | AT1G76160 | 25.893 | 336 | 201 | 10 | 1 | 316 | 228 | 535 | 4.02e-23 | 100 |
MS.gene28111.t1 | AT4G22010 | 25.526 | 333 | 207 | 9 | 1 | 316 | 227 | 535 | 1.69e-21 | 95.1 |
MS.gene28111.t1 | AT4G37160 | 25.225 | 333 | 205 | 10 | 1 | 315 | 232 | 538 | 1.26e-20 | 92.8 |
MS.gene28111.t1 | AT1G21860 | 24.169 | 331 | 208 | 9 | 1 | 314 | 229 | 533 | 6.54e-20 | 90.5 |
MS.gene28111.t1 | AT1G21850 | 24.925 | 333 | 207 | 10 | 1 | 316 | 229 | 535 | 9.30e-20 | 90.1 |
MS.gene28111.t1 | AT1G41830 | 23.077 | 338 | 208 | 9 | 1 | 316 | 229 | 536 | 2.47e-19 | 89.0 |
MS.gene28111.t1 | AT4G12420 | 26.403 | 303 | 189 | 9 | 1 | 289 | 238 | 520 | 7.21e-19 | 87.8 |
MS.gene28111.t1 | AT4G12420 | 26.403 | 303 | 189 | 9 | 1 | 289 | 238 | 520 | 7.21e-19 | 87.8 |
MS.gene28111.t1 | AT5G48450 | 24.667 | 300 | 194 | 5 | 1 | 289 | 236 | 514 | 2.85e-18 | 85.9 |
MS.gene28111.t1 | AT5G48450 | 24.667 | 300 | 194 | 5 | 1 | 289 | 236 | 514 | 3.04e-18 | 85.9 |
MS.gene28111.t1 | AT1G55570 | 24.242 | 330 | 217 | 7 | 1 | 316 | 235 | 545 | 5.92e-18 | 84.7 |
MS.gene28111.t1 | AT4G25240 | 24.709 | 344 | 200 | 13 | 1 | 315 | 241 | 554 | 8.81e-17 | 81.3 |
MS.gene28111.t1 | AT4G25240 | 24.709 | 344 | 200 | 13 | 1 | 315 | 241 | 554 | 8.81e-17 | 81.3 |
MS.gene28111.t1 | AT5G51480 | 23.009 | 339 | 217 | 9 | 1 | 317 | 240 | 556 | 4.25e-16 | 79.3 |
MS.gene28111.t1 | AT3G13390 | 23.810 | 336 | 211 | 9 | 1 | 316 | 234 | 544 | 8.52e-16 | 78.6 |
MS.gene28111.t1 | AT4G28090 | 25.490 | 306 | 178 | 9 | 3 | 289 | 233 | 507 | 1.16e-15 | 77.8 |
MS.gene28111.t1 | AT3G13400 | 22.492 | 329 | 225 | 7 | 1 | 317 | 233 | 543 | 2.32e-15 | 77.0 |
MS.gene28111.t1 | AT3G13400 | 22.492 | 329 | 225 | 7 | 1 | 317 | 233 | 543 | 2.32e-15 | 77.0 |
MS.gene28111.t1 | AT4G38420 | 23.193 | 332 | 216 | 9 | 1 | 314 | 232 | 542 | 1.34e-14 | 74.7 |
MS.gene28111.t1 | AT1G55560 | 23.030 | 330 | 222 | 8 | 1 | 317 | 232 | 542 | 2.52e-14 | 73.9 |
Find 77 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAATTGCTTGTTTAATTA+TGG | 0.174792 | 4.4:+10076425 | None:intergenic |
GATCGGATAATCCTGGTGTT+TGG | 0.257745 | 4.4:-10076576 | MS.gene28111:CDS |
CTTCTAGCAATGGAATTTAT+AGG | 0.273291 | 4.4:-10076828 | MS.gene28111:CDS |
GGCACAGTATTCTTCATAAT+GGG | 0.282501 | 4.4:+10076634 | None:intergenic |
GGCGACCTCATTGGATGGTT+TGG | 0.294439 | 4.4:+10077174 | None:intergenic |
GAGGTTTGATTGTGTAATTT+TGG | 0.312038 | 4.4:+10077073 | None:intergenic |
TATAGAGTCTCATTTCTATA+TGG | 0.319868 | 4.4:-10076539 | MS.gene28111:CDS |
ATCGGATAATCCTGGTGTTT+GGG | 0.329948 | 4.4:-10076575 | MS.gene28111:CDS |
CATTTGGTTGGACTGCTTTG+AGG | 0.330733 | 4.4:-10076603 | MS.gene28111:CDS |
GCGACCTCATTGGATGGTTT+GGG | 0.364061 | 4.4:+10077175 | None:intergenic |
GGCAAAAGCAAAGGCTTCTT+AGG | 0.366890 | 4.4:-10076448 | MS.gene28111:CDS |
TGGCACAGTATTCTTCATAA+TGG | 0.366973 | 4.4:+10076633 | None:intergenic |
AGCCATCAGGTGGAGGTGTT+TGG | 0.375855 | 4.4:+10076902 | None:intergenic |
CTTTAAGTGCAACAAGATAA+GGG | 0.376250 | 4.4:+10076947 | None:intergenic |
GTGATCCAGTAGTTTCTTGA+TGG | 0.389887 | 4.4:+10077258 | None:intergenic |
TCTTTAAGTGCAACAAGATA+AGG | 0.407309 | 4.4:+10076946 | None:intergenic |
GCACTTAAAGAGAATATAAC+TGG | 0.408038 | 4.4:-10076934 | MS.gene28111:CDS |
AAGAAGGAATTGAAAGGGTT+GGG | 0.416848 | 4.4:-10076498 | MS.gene28111:CDS |
GGTGGAGATGGTGGAGATGT+TGG | 0.421057 | 4.4:+10077150 | None:intergenic |
GTTTCTGCTGACAACATTTG+AGG | 0.423513 | 4.4:+10077236 | None:intergenic |
CTTCAACAACAGTCATGTTA+TGG | 0.433837 | 4.4:+10077373 | None:intergenic |
ACACATCCATGGCATCTTCA+TGG | 0.435000 | 4.4:-10076736 | MS.gene28111:CDS |
CAAATGTTGTCAGCAGAAAC+AGG | 0.442581 | 4.4:-10077233 | MS.gene28111:CDS |
TCCACCATCTCCACCAGCTT+GGG | 0.443905 | 4.4:-10077142 | MS.gene28111:CDS |
ATAGAGTCTCATTTCTATAT+GGG | 0.445190 | 4.4:-10076538 | MS.gene28111:CDS |
TAGAGATTCTTAACCACAAA+AGG | 0.447645 | 4.4:+10077330 | None:intergenic |
ACTCTATCTGAGGTTGTTGG+AGG | 0.454902 | 4.4:+10077054 | None:intergenic |
CTATAGACGGTGTTCGTCAT+TGG | 0.461142 | 4.4:-10077005 | MS.gene28111:CDS |
CTCCACCATCTCCACCAGCT+TGG | 0.463071 | 4.4:-10077143 | MS.gene28111:CDS |
AGGACAACCCCGCCTGGTTT+AGG | 0.465849 | 4.4:-10077213 | MS.gene28111:CDS |
GAAGCTACCTTCATCCATCA+TGG | 0.470885 | 4.4:-10076476 | MS.gene28111:CDS |
TTTCTATATGGGAATGGGAG+TGG | 0.472301 | 4.4:-10076527 | MS.gene28111:CDS |
TGGGTACTTGGATATGGAAA+GGG | 0.475912 | 4.4:-10076703 | MS.gene28111:CDS |
GAAGAAGGAATTGAAAGGGT+TGG | 0.486528 | 4.4:-10076499 | MS.gene28111:CDS |
TCTCATTTCTATATGGGAAT+GGG | 0.493176 | 4.4:-10076532 | MS.gene28111:CDS |
AGGTTTCGATCGGATAATCC+TGG | 0.493226 | 4.4:-10076583 | MS.gene28111:CDS |
GTCTCATTTCTATATGGGAA+TGG | 0.494997 | 4.4:-10076533 | MS.gene28111:CDS |
GACTGCTTTGAGGTTTCGAT+CGG | 0.497349 | 4.4:-10076593 | MS.gene28111:CDS |
ATGACTCTATCTGAGGTTGT+TGG | 0.501248 | 4.4:+10077051 | None:intergenic |
TGCCAGTGCACTCATTTGGT+TGG | 0.501895 | 4.4:-10076615 | MS.gene28111:CDS |
TTTGGTGAGCTTTGATTGCA+AGG | 0.510484 | 4.4:+10077091 | None:intergenic |
TTGGGTACTTGGATATGGAA+AGG | 0.514165 | 4.4:-10076704 | MS.gene28111:CDS |
GACTCAACATTGTCCCAAGC+TGG | 0.516390 | 4.4:+10077129 | None:intergenic |
TGATCCAGTAGTTTCTTGAT+GGG | 0.518958 | 4.4:+10077259 | None:intergenic |
ACTGTGCCAGTGCACTCATT+TGG | 0.524117 | 4.4:-10076619 | MS.gene28111:CDS |
GATGTTGGTGGCGACCTCAT+TGG | 0.527521 | 4.4:+10077165 | None:intergenic |
CAAGATAAGGGGTGTGAGGT+AGG | 0.528066 | 4.4:+10076959 | None:intergenic |
CCTTCATCCATCATGGGTTG+TGG | 0.536511 | 4.4:-10076469 | MS.gene28111:CDS |
AAGACCCATCAAGAAACTAC+TGG | 0.542638 | 4.4:-10077263 | MS.gene28111:CDS |
TTATTAAAATCATAGCCATC+AGG | 0.546504 | 4.4:+10076889 | None:intergenic |
GGAGATGGTGGAGATGTTGG+TGG | 0.552505 | 4.4:+10077153 | None:intergenic |
ACAAATGCTACTTCTAGCAA+TGG | 0.556255 | 4.4:-10076838 | MS.gene28111:CDS |
AGAAACAGGACAACCCCGCC+TGG | 0.556484 | 4.4:-10077219 | MS.gene28111:CDS |
TTGTAAATTGTAATAATGCA+GGG | 0.560065 | 4.4:-10077396 | None:intergenic |
CCACAACCCATGATGGATGA+AGG | 0.564653 | 4.4:+10076469 | None:intergenic |
TTGGTGGCGACCTCATTGGA+TGG | 0.568529 | 4.4:+10077169 | None:intergenic |
ATGGGTTGTGGCAAAAGCAA+AGG | 0.574548 | 4.4:-10076457 | MS.gene28111:CDS |
TTGTCCCAAGCTGGTGGAGA+TGG | 0.577934 | 4.4:+10077138 | None:intergenic |
TCATGTCCATGAAGATGCCA+TGG | 0.579018 | 4.4:+10076730 | None:intergenic |
CAATGAAAAGCCCAAACACC+AGG | 0.582233 | 4.4:+10076565 | None:intergenic |
AAATCATAGCCATCAGGTGG+AGG | 0.584412 | 4.4:+10076895 | None:intergenic |
ATGACTGTTGTTGAAGCAGA+TGG | 0.592854 | 4.4:-10077366 | MS.gene28111:CDS |
AAGCTACCTTCATCCATCAT+GGG | 0.594823 | 4.4:-10076475 | MS.gene28111:CDS |
GTCCAACCAAATGAGTGCAC+TGG | 0.595748 | 4.4:+10076613 | None:intergenic |
AAGAATCTCTACATATACTC+AGG | 0.600439 | 4.4:-10077318 | MS.gene28111:CDS |
TCAACATTGTCCCAAGCTGG+TGG | 0.600784 | 4.4:+10077132 | None:intergenic |
AACCAAACACCTCCACCTGA+TGG | 0.600941 | 4.4:-10076904 | MS.gene28111:CDS |
AACACACAAAACACTATAGA+CGG | 0.600946 | 4.4:-10077018 | MS.gene28111:CDS |
CAAAACTATGACTCTATCTG+AGG | 0.612834 | 4.4:+10077044 | None:intergenic |
TCCCAAGCTGGTGGAGATGG+TGG | 0.622614 | 4.4:+10077141 | None:intergenic |
TTTAAGTGCAACAAGATAAG+GGG | 0.625406 | 4.4:+10076948 | None:intergenic |
ATAATAGTGAGACACATCCA+TGG | 0.633125 | 4.4:-10076747 | MS.gene28111:CDS |
GCACAGTATTCTTCATAATG+GGG | 0.640153 | 4.4:+10076635 | None:intergenic |
TTAAAATCATAGCCATCAGG+TGG | 0.640896 | 4.4:+10076892 | None:intergenic |
GCAACAAGATAAGGGGTGTG+AGG | 0.654315 | 4.4:+10076955 | None:intergenic |
ACTACCCAAACCATCCAATG+AGG | 0.700116 | 4.4:-10077179 | MS.gene28111:CDS |
GCTGAAGTTCAATACAACTG+TGG | 0.701274 | 4.4:-10076806 | MS.gene28111:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCACCAAATTATAATTTTTT+GGG | + | chr4.4:10077163-10077182 | None:intergenic | 15.0% |
!!! | TTCACCAAATTATAATTTTT+TGG | + | chr4.4:10077164-10077183 | None:intergenic | 15.0% |
!! | AGACCCAAAAAATTATAATT+TGG | - | chr4.4:10077157-10077176 | MS.gene28111:CDS | 20.0% |
! | ATAGAGTCTCATTTCTATAT+GGG | - | chr4.4:10077281-10077300 | MS.gene28111:CDS | 25.0% |
! | TATAGAGTCTCATTTCTATA+TGG | - | chr4.4:10077280-10077299 | MS.gene28111:CDS | 25.0% |
! | TTATTAAAATCATAGCCATC+AGG | + | chr4.4:10076933-10076952 | None:intergenic | 25.0% |
!! | TAATTATGATATTTTCAGCG+TGG | - | chr4.4:10076950-10076969 | MS.gene28111:CDS | 25.0% |
!!! | TTTTGAAGAAGGAATTGAAA+GGG | - | chr4.4:10077316-10077335 | MS.gene28111:CDS | 25.0% |
!!! | TTTTTGAAGAAGGAATTGAA+AGG | - | chr4.4:10077315-10077334 | MS.gene28111:CDS | 25.0% |
AACACACAAAACACTATAGA+CGG | - | chr4.4:10076801-10076820 | MS.gene28111:CDS | 30.0% | |
AAGAATCTCTACATATACTC+AGG | - | chr4.4:10076501-10076520 | MS.gene28111:CDS | 30.0% | |
CTTCTAGCAATGGAATTTAT+AGG | - | chr4.4:10076991-10077010 | MS.gene28111:CDS | 30.0% | |
CTTTAAGTGCAACAAGATAA+GGG | + | chr4.4:10076875-10076894 | None:intergenic | 30.0% | |
GCACTTAAAGAGAATATAAC+TGG | - | chr4.4:10076885-10076904 | MS.gene28111:CDS | 30.0% | |
TAGAGATTCTTAACCACAAA+AGG | + | chr4.4:10076492-10076511 | None:intergenic | 30.0% | |
TAGTTAAAAATGCCTAAACC+AGG | + | chr4.4:10076621-10076640 | None:intergenic | 30.0% | |
TCTCATTTCTATATGGGAAT+GGG | - | chr4.4:10077287-10077306 | MS.gene28111:CDS | 30.0% | |
TCTTTAAGTGCAACAAGATA+AGG | + | chr4.4:10076876-10076895 | None:intergenic | 30.0% | |
TTTAAGTGCAACAAGATAAG+GGG | + | chr4.4:10076874-10076893 | None:intergenic | 30.0% | |
! | ATCTTCATGGACATGATTTT+TGG | - | chr4.4:10077096-10077115 | MS.gene28111:CDS | 30.0% |
! | GAGGTTTGATTGTGTAATTT+TGG | + | chr4.4:10076749-10076768 | None:intergenic | 30.0% |
! | TCTTCATGGACATGATTTTT+GGG | - | chr4.4:10077097-10077116 | MS.gene28111:CDS | 30.0% |
AAGAAGGAATTGAAAGGGTT+GGG | - | chr4.4:10077321-10077340 | MS.gene28111:CDS | 35.0% | |
ATAATAGTGAGACACATCCA+TGG | - | chr4.4:10077072-10077091 | MS.gene28111:CDS | 35.0% | |
CAAAACTATGACTCTATCTG+AGG | + | chr4.4:10076778-10076797 | None:intergenic | 35.0% | |
CTTCAACAACAGTCATGTTA+TGG | + | chr4.4:10076449-10076468 | None:intergenic | 35.0% | |
GCACAGTATTCTTCATAATG+GGG | + | chr4.4:10077187-10077206 | None:intergenic | 35.0% | |
GGCACAGTATTCTTCATAAT+GGG | + | chr4.4:10077188-10077207 | None:intergenic | 35.0% | |
GTCTCATTTCTATATGGGAA+TGG | - | chr4.4:10077286-10077305 | MS.gene28111:CDS | 35.0% | |
TGATCCAGTAGTTTCTTGAT+GGG | + | chr4.4:10076563-10076582 | None:intergenic | 35.0% | |
TGGCACAGTATTCTTCATAA+TGG | + | chr4.4:10077189-10077208 | None:intergenic | 35.0% | |
TTAAAAATGCCTAAACCAGG+CGG | + | chr4.4:10076618-10076637 | None:intergenic | 35.0% | |
TTAAAATCATAGCCATCAGG+TGG | + | chr4.4:10076930-10076949 | None:intergenic | 35.0% | |
! | ACAAATGCTACTTCTAGCAA+TGG | - | chr4.4:10076981-10077000 | MS.gene28111:CDS | 35.0% |
! | ACACTATGTTGATCCTTTTG+TGG | - | chr4.4:10076476-10076495 | MS.gene28111:CDS | 35.0% |
!!! | GATTTTTGGGTACTTGGATA+TGG | - | chr4.4:10077110-10077129 | MS.gene28111:CDS | 35.0% |
AAGACCCATCAAGAAACTAC+TGG | - | chr4.4:10076556-10076575 | MS.gene28111:CDS | 40.0% | |
AAGCTACCTTCATCCATCAT+GGG | - | chr4.4:10077344-10077363 | MS.gene28111:CDS | 40.0% | |
ATCGGATAATCCTGGTGTTT+GGG | - | chr4.4:10077244-10077263 | MS.gene28111:CDS | 40.0% | |
ATGACTGTTGTTGAAGCAGA+TGG | - | chr4.4:10076453-10076472 | MS.gene28111:CDS | 40.0% | |
CAAATGTTGTCAGCAGAAAC+AGG | - | chr4.4:10076586-10076605 | MS.gene28111:CDS | 40.0% | |
GAAGAAGGAATTGAAAGGGT+TGG | - | chr4.4:10077320-10077339 | MS.gene28111:CDS | 40.0% | |
GCTGAAGTTCAATACAACTG+TGG | - | chr4.4:10077013-10077032 | MS.gene28111:CDS | 40.0% | |
GTGATCCAGTAGTTTCTTGA+TGG | + | chr4.4:10076564-10076583 | None:intergenic | 40.0% | |
GTTTCTGCTGACAACATTTG+AGG | + | chr4.4:10076586-10076605 | None:intergenic | 40.0% | |
TAAAAATGCCTAAACCAGGC+GGG | + | chr4.4:10076617-10076636 | None:intergenic | 40.0% | |
TGGGTACTTGGATATGGAAA+GGG | - | chr4.4:10077116-10077135 | MS.gene28111:CDS | 40.0% | |
TTGGGTACTTGGATATGGAA+AGG | - | chr4.4:10077115-10077134 | MS.gene28111:CDS | 40.0% | |
TTTCTATATGGGAATGGGAG+TGG | - | chr4.4:10077292-10077311 | MS.gene28111:CDS | 40.0% | |
! | ATGACTCTATCTGAGGTTGT+TGG | + | chr4.4:10076771-10076790 | None:intergenic | 40.0% |
! | TTTGGTGAGCTTTGATTGCA+AGG | + | chr4.4:10076731-10076750 | None:intergenic | 40.0% |
!! | ATGGGAGTGGTTTTTGAAGA+AGG | - | chr4.4:10077305-10077324 | MS.gene28111:CDS | 40.0% |
!!! | GGACATGATTTTTGGGTACT+TGG | - | chr4.4:10077104-10077123 | MS.gene28111:CDS | 40.0% |
AAAAATGCCTAAACCAGGCG+GGG | + | chr4.4:10076616-10076635 | None:intergenic | 45.0% | |
AAATCATAGCCATCAGGTGG+AGG | + | chr4.4:10076927-10076946 | None:intergenic | 45.0% | |
ACACATCCATGGCATCTTCA+TGG | - | chr4.4:10077083-10077102 | MS.gene28111:CDS | 45.0% | |
ACTACCCAAACCATCCAATG+AGG | - | chr4.4:10076640-10076659 | MS.gene28111:CDS | 45.0% | |
AGGTTTCGATCGGATAATCC+TGG | - | chr4.4:10077236-10077255 | MS.gene28111:CDS | 45.0% | |
CAATGAAAAGCCCAAACACC+AGG | + | chr4.4:10077257-10077276 | None:intergenic | 45.0% | |
CATTTGGTTGGACTGCTTTG+AGG | - | chr4.4:10077216-10077235 | MS.gene28111:CDS | 45.0% | |
CTATAGACGGTGTTCGTCAT+TGG | - | chr4.4:10076814-10076833 | MS.gene28111:CDS | 45.0% | |
GAAGCTACCTTCATCCATCA+TGG | - | chr4.4:10077343-10077362 | MS.gene28111:CDS | 45.0% | |
GATCGGATAATCCTGGTGTT+TGG | - | chr4.4:10077243-10077262 | MS.gene28111:CDS | 45.0% | |
GGCAAAAGCAAAGGCTTCTT+AGG | - | chr4.4:10077371-10077390 | MS.gene28111:CDS | 45.0% | |
TCATGTCCATGAAGATGCCA+TGG | + | chr4.4:10077092-10077111 | None:intergenic | 45.0% | |
! | ACTCTATCTGAGGTTGTTGG+AGG | + | chr4.4:10076768-10076787 | None:intergenic | 45.0% |
! | ATGGGTTGTGGCAAAAGCAA+AGG | - | chr4.4:10077362-10077381 | MS.gene28111:CDS | 45.0% |
!! | GACTGCTTTGAGGTTTCGAT+CGG | - | chr4.4:10077226-10077245 | MS.gene28111:CDS | 45.0% |
AACCAAACACCTCCACCTGA+TGG | - | chr4.4:10076915-10076934 | MS.gene28111:CDS | 50.0% | |
ACTGTGCCAGTGCACTCATT+TGG | - | chr4.4:10077200-10077219 | MS.gene28111:CDS | 50.0% | |
GACTCAACATTGTCCCAAGC+TGG | + | chr4.4:10076693-10076712 | None:intergenic | 50.0% | |
GCGACCTCATTGGATGGTTT+GGG | + | chr4.4:10076647-10076666 | None:intergenic | 50.0% | |
GTCCAACCAAATGAGTGCAC+TGG | + | chr4.4:10077209-10077228 | None:intergenic | 50.0% | |
TCAACATTGTCCCAAGCTGG+TGG | + | chr4.4:10076690-10076709 | None:intergenic | 50.0% | |
TGCCAGTGCACTCATTTGGT+TGG | - | chr4.4:10077204-10077223 | MS.gene28111:CDS | 50.0% | |
! | CAAGATAAGGGGTGTGAGGT+AGG | + | chr4.4:10076863-10076882 | None:intergenic | 50.0% |
! | CCTTCATCCATCATGGGTTG+TGG | - | chr4.4:10077350-10077369 | MS.gene28111:CDS | 50.0% |
! | GCAACAAGATAAGGGGTGTG+AGG | + | chr4.4:10076867-10076886 | None:intergenic | 50.0% |
! | GCTTTTGCCACAACCCATGA+TGG | + | chr4.4:10077360-10077379 | None:intergenic | 50.0% |
!! | CCACAACCCATGATGGATGA+AGG | + | chr4.4:10077353-10077372 | None:intergenic | 50.0% |
GGCGACCTCATTGGATGGTT+TGG | + | chr4.4:10076648-10076667 | None:intergenic | 55.0% | |
TCCACCATCTCCACCAGCTT+GGG | - | chr4.4:10076677-10076696 | MS.gene28111:CDS | 55.0% | |
TTGTCCCAAGCTGGTGGAGA+TGG | + | chr4.4:10076684-10076703 | None:intergenic | 55.0% | |
!! | AGCCATCAGGTGGAGGTGTT+TGG | + | chr4.4:10076920-10076939 | None:intergenic | 55.0% |
!! | GATGTTGGTGGCGACCTCAT+TGG | + | chr4.4:10076657-10076676 | None:intergenic | 55.0% |
!! | GGAGATGGTGGAGATGTTGG+TGG | + | chr4.4:10076669-10076688 | None:intergenic | 55.0% |
!! | GGTGGAGATGGTGGAGATGT+TGG | + | chr4.4:10076672-10076691 | None:intergenic | 55.0% |
!! | TTGGTGGCGACCTCATTGGA+TGG | + | chr4.4:10076653-10076672 | None:intergenic | 55.0% |
AGAAACAGGACAACCCCGCC+TGG | - | chr4.4:10076600-10076619 | MS.gene28111:CDS | 60.0% | |
AGGACAACCCCGCCTGGTTT+AGG | - | chr4.4:10076606-10076625 | MS.gene28111:CDS | 60.0% | |
CTCCACCATCTCCACCAGCT+TGG | - | chr4.4:10076676-10076695 | MS.gene28111:CDS | 60.0% | |
TCCCAAGCTGGTGGAGATGG+TGG | + | chr4.4:10076681-10076700 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 10076438 | 10077403 | 10076438 | ID=MS.gene28111 |
chr4.4 | mRNA | 10076438 | 10077403 | 10076438 | ID=MS.gene28111.t1;Parent=MS.gene28111 |
chr4.4 | exon | 10076438 | 10077403 | 10076438 | ID=MS.gene28111.t1.exon1;Parent=MS.gene28111.t1 |
chr4.4 | CDS | 10076438 | 10077403 | 10076438 | ID=cds.MS.gene28111.t1;Parent=MS.gene28111.t1 |
Gene Sequence |
Protein sequence |