AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28111


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28111.t1 MTR_8g091390 98.442 321 5 0 1 321 257 577 0.0 658
MS.gene28111.t1 MTR_3g078700 48.408 314 160 2 1 314 227 538 4.52e-106 320
MS.gene28111.t1 MTR_3g078730 49.216 319 159 3 1 318 226 542 1.82e-105 319
MS.gene28111.t1 MTR_3g078740 46.491 342 155 6 1 318 254 591 2.11e-100 307
MS.gene28111.t1 MTR_5g020600 35.987 314 176 9 1 297 244 549 3.83e-47 167
MS.gene28111.t1 MTR_5g020620 34.528 307 181 6 1 294 240 539 3.22e-45 162
MS.gene28111.t1 MTR_5g081810 33.226 310 181 8 1 294 208 507 2.91e-41 150
MS.gene28111.t1 MTR_5g069680 34.194 310 178 9 1 294 237 536 3.48e-40 148
MS.gene28111.t1 MTR_3g462760 32.907 313 177 9 1 294 236 534 4.01e-40 148
MS.gene28111.t1 MTR_7g062250 33.235 340 193 12 1 311 244 578 3.22e-39 145
MS.gene28111.t1 MTR_5g083360 30.882 340 200 10 1 311 234 567 1.61e-38 143
MS.gene28111.t1 MTR_7g458880 31.627 332 186 11 4 305 246 566 2.10e-38 143
MS.gene28111.t1 MTR_2g008330 32.177 317 185 7 1 294 248 557 7.18e-38 142
MS.gene28111.t1 MTR_7g060460 32.733 333 188 11 1 305 243 567 7.92e-38 142
MS.gene28111.t1 MTR_8g027375 33.013 312 185 8 1 294 244 549 4.69e-37 139
MS.gene28111.t1 MTR_7g058690 31.325 332 193 11 1 305 243 566 4.78e-37 139
MS.gene28111.t1 MTR_3g101640 32.399 321 179 13 1 294 240 549 4.34e-35 134
MS.gene28111.t1 MTR_7g062310 30.973 339 189 12 1 305 257 584 7.28e-35 134
MS.gene28111.t1 MTR_5g073210 32.822 326 186 9 4 308 238 551 2.72e-34 132
MS.gene28111.t1 MTR_4g015120 41.615 161 90 2 134 294 379 535 1.71e-33 129
MS.gene28111.t1 MTR_3g101635 31.861 317 184 11 1 294 237 544 4.57e-32 125
MS.gene28111.t1 MTR_7g065980 28.783 337 206 9 1 310 233 562 8.09e-32 125
MS.gene28111.t1 MTR_4g064530 31.595 326 195 11 1 305 253 571 5.43e-31 122
MS.gene28111.t1 MTR_3g079660 50.000 96 47 1 226 320 5 100 7.82e-31 112
MS.gene28111.t1 MTR_4g019225 29.664 327 187 11 1 295 236 551 2.53e-30 120
MS.gene28111.t1 MTR_7g065970 29.102 323 194 9 1 295 234 549 5.24e-30 120
MS.gene28111.t1 MTR_3g071890 29.841 315 185 11 1 291 243 545 1.36e-28 115
MS.gene28111.t1 MTR_8g479390 28.228 333 198 11 1 316 230 538 2.31e-27 112
MS.gene28111.t1 MTR_5g081790 40.385 156 84 3 134 286 283 432 4.46e-27 110
MS.gene28111.t1 MTR_5g018270 26.807 332 201 9 1 316 230 535 1.75e-26 109
MS.gene28111.t1 MTR_4g064530 30.392 306 178 12 1 280 253 549 5.39e-24 102
MS.gene28111.t1 MTR_1g090707 26.946 334 197 11 1 313 231 538 9.51e-24 102
MS.gene28111.t1 MTR_4g075690 24.850 334 207 9 1 316 230 537 4.16e-22 97.1
MS.gene28111.t1 MTR_3g008580 23.952 334 215 7 1 315 242 555 6.49e-22 96.7
MS.gene28111.t1 MTR_4g132320 26.471 340 194 12 1 316 232 539 4.33e-21 94.0
MS.gene28111.t1 MTR_4g048350 26.126 333 204 9 1 316 227 534 1.33e-20 92.4
MS.gene28111.t1 MTR_4g049390 26.331 338 197 9 1 316 228 535 4.17e-20 91.3
MS.gene28111.t1 MTR_3g083450 26.126 333 204 10 1 315 232 540 7.56e-20 90.5
MS.gene28111.t1 MTR_3g083410 25.526 333 206 10 1 315 195 503 8.12e-20 90.1
MS.gene28111.t1 MTR_3g083440 26.126 333 204 10 1 315 231 539 8.69e-20 90.1
MS.gene28111.t1 MTR_3g083390 26.126 333 204 10 1 315 231 539 1.34e-19 89.7
MS.gene28111.t1 MTR_8g479380 24.551 334 206 10 1 315 229 535 1.42e-19 89.7
MS.gene28111.t1 MTR_2g088080 24.852 338 202 7 1 316 150 457 1.63e-19 89.0
MS.gene28111.t1 MTR_3g083400 26.126 333 204 10 1 315 231 539 2.23e-19 89.0
MS.gene28111.t1 MTR_2g088080 24.852 338 202 7 1 316 231 538 2.57e-19 89.0
MS.gene28111.t1 MTR_3g115050 22.287 341 207 10 1 316 231 538 8.33e-19 87.4
MS.gene28111.t1 MTR_7g051440 25.836 329 206 9 1 312 242 549 8.55e-19 87.4
MS.gene28111.t1 MTR_3g083430 25.826 333 205 10 1 315 231 539 1.66e-18 86.3
MS.gene28111.t1 MTR_1g026410 24.340 341 200 10 1 316 230 537 2.06e-17 83.2
MS.gene28111.t1 MTR_4g083210 25.904 332 206 10 1 315 227 535 2.20e-17 83.2
MS.gene28111.t1 MTR_4g101650 26.506 332 205 11 1 313 240 551 1.21e-16 80.9
MS.gene28111.t1 MTR_4g083190 22.630 327 223 7 1 315 233 541 1.54e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28111.t1 AT4G39830 67.610 318 100 2 1 315 156 473 2.26e-161 459
MS.gene28111.t1 AT4G39830 67.610 318 100 2 1 315 167 484 4.15e-161 458
MS.gene28111.t1 AT4G39830 67.610 318 100 2 1 315 169 486 5.12e-161 458
MS.gene28111.t1 AT4G39830 67.610 318 100 2 1 315 264 581 4.08e-160 459
MS.gene28111.t1 AT5G21105 50.629 318 155 2 1 318 76 391 2.01e-110 327
MS.gene28111.t1 AT5G21105 50.629 318 155 2 1 318 267 582 8.19e-108 326
MS.gene28111.t1 AT5G21100 48.125 320 162 3 1 318 250 567 4.06e-102 311
MS.gene28111.t1 AT5G21105 48.540 274 139 2 1 274 267 538 3.35e-82 259
MS.gene28111.t1 AT5G58910 33.968 315 178 9 1 294 196 501 7.69e-43 155
MS.gene28111.t1 AT5G58910 33.968 315 178 9 1 294 240 545 1.19e-42 155
MS.gene28111.t1 AT5G58910 33.968 315 178 9 1 294 239 544 1.24e-42 155
MS.gene28111.t1 AT2G38080 34.426 305 185 6 1 294 236 536 1.14e-40 149
MS.gene28111.t1 AT5G05390 32.588 313 180 11 4 294 240 543 3.35e-40 148
MS.gene28111.t1 AT1G18140 31.361 338 192 11 4 309 242 571 5.68e-39 145
MS.gene28111.t1 AT5G03260 42.857 161 89 1 134 294 378 535 1.18e-37 141
MS.gene28111.t1 AT5G01050 29.080 337 200 11 1 306 232 560 1.47e-36 138
MS.gene28111.t1 AT5G60020 32.087 321 177 11 4 290 238 551 4.63e-36 137
MS.gene28111.t1 AT5G60020 32.087 321 177 11 4 290 206 519 5.19e-36 136
MS.gene28111.t1 AT5G01190 31.629 313 184 8 1 294 235 536 3.74e-35 134
MS.gene28111.t1 AT5G01190 31.629 313 184 8 1 294 221 522 4.07e-35 134
MS.gene28111.t1 AT2G46570 30.990 313 184 10 4 294 160 462 8.55e-35 132
MS.gene28111.t1 AT2G46570 30.990 313 184 10 4 294 245 547 1.69e-34 132
MS.gene28111.t1 AT2G29130 30.794 315 186 9 1 290 240 547 3.06e-34 132
MS.gene28111.t1 AT5G07130 29.825 342 195 12 4 311 154 484 9.81e-34 129
MS.gene28111.t1 AT5G07130 29.825 342 195 12 4 311 154 484 9.81e-34 129
MS.gene28111.t1 AT5G07130 29.825 342 195 12 4 311 239 569 1.90e-33 129
MS.gene28111.t1 AT3G09220 30.794 315 192 11 1 294 139 448 2.68e-33 128
MS.gene28111.t1 AT5G48100 31.562 320 183 14 1 294 232 541 3.08e-33 129
MS.gene28111.t1 AT3G09220 30.794 315 192 11 1 294 236 545 5.82e-33 128
MS.gene28111.t1 AT5G09360 32.121 330 186 13 1 309 247 559 5.84e-33 128
MS.gene28111.t1 AT2G40370 28.923 325 189 9 4 294 242 558 5.81e-32 125
MS.gene28111.t1 AT5G01040 29.063 320 188 12 4 294 235 544 1.27e-31 124
MS.gene28111.t1 AT2G30210 30.794 315 187 10 4 294 241 548 1.92e-30 121
MS.gene28111.t1 AT5G60020 31.148 305 169 11 4 274 238 535 5.63e-29 117
MS.gene28111.t1 AT2G23630 27.679 336 193 11 1 315 235 541 1.15e-26 110
MS.gene28111.t1 AT2G23630 27.679 336 193 11 1 315 230 536 1.36e-26 110
MS.gene28111.t1 AT5G66920 26.444 329 208 7 1 316 236 543 4.34e-26 108
MS.gene28111.t1 AT1G75790 27.778 342 196 13 1 315 228 545 9.70e-24 102
MS.gene28111.t1 AT1G76160 25.893 336 201 10 1 316 228 535 4.02e-23 100
MS.gene28111.t1 AT4G22010 25.526 333 207 9 1 316 227 535 1.69e-21 95.1
MS.gene28111.t1 AT4G37160 25.225 333 205 10 1 315 232 538 1.26e-20 92.8
MS.gene28111.t1 AT1G21860 24.169 331 208 9 1 314 229 533 6.54e-20 90.5
MS.gene28111.t1 AT1G21850 24.925 333 207 10 1 316 229 535 9.30e-20 90.1
MS.gene28111.t1 AT1G41830 23.077 338 208 9 1 316 229 536 2.47e-19 89.0
MS.gene28111.t1 AT4G12420 26.403 303 189 9 1 289 238 520 7.21e-19 87.8
MS.gene28111.t1 AT4G12420 26.403 303 189 9 1 289 238 520 7.21e-19 87.8
MS.gene28111.t1 AT5G48450 24.667 300 194 5 1 289 236 514 2.85e-18 85.9
MS.gene28111.t1 AT5G48450 24.667 300 194 5 1 289 236 514 3.04e-18 85.9
MS.gene28111.t1 AT1G55570 24.242 330 217 7 1 316 235 545 5.92e-18 84.7
MS.gene28111.t1 AT4G25240 24.709 344 200 13 1 315 241 554 8.81e-17 81.3
MS.gene28111.t1 AT4G25240 24.709 344 200 13 1 315 241 554 8.81e-17 81.3
MS.gene28111.t1 AT5G51480 23.009 339 217 9 1 317 240 556 4.25e-16 79.3
MS.gene28111.t1 AT3G13390 23.810 336 211 9 1 316 234 544 8.52e-16 78.6
MS.gene28111.t1 AT4G28090 25.490 306 178 9 3 289 233 507 1.16e-15 77.8
MS.gene28111.t1 AT3G13400 22.492 329 225 7 1 317 233 543 2.32e-15 77.0
MS.gene28111.t1 AT3G13400 22.492 329 225 7 1 317 233 543 2.32e-15 77.0
MS.gene28111.t1 AT4G38420 23.193 332 216 9 1 314 232 542 1.34e-14 74.7
MS.gene28111.t1 AT1G55560 23.030 330 222 8 1 317 232 542 2.52e-14 73.9

Find 77 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTGCTTGTTTAATTA+TGG 0.174792 4.4:+10076425 None:intergenic
GATCGGATAATCCTGGTGTT+TGG 0.257745 4.4:-10076576 MS.gene28111:CDS
CTTCTAGCAATGGAATTTAT+AGG 0.273291 4.4:-10076828 MS.gene28111:CDS
GGCACAGTATTCTTCATAAT+GGG 0.282501 4.4:+10076634 None:intergenic
GGCGACCTCATTGGATGGTT+TGG 0.294439 4.4:+10077174 None:intergenic
GAGGTTTGATTGTGTAATTT+TGG 0.312038 4.4:+10077073 None:intergenic
TATAGAGTCTCATTTCTATA+TGG 0.319868 4.4:-10076539 MS.gene28111:CDS
ATCGGATAATCCTGGTGTTT+GGG 0.329948 4.4:-10076575 MS.gene28111:CDS
CATTTGGTTGGACTGCTTTG+AGG 0.330733 4.4:-10076603 MS.gene28111:CDS
GCGACCTCATTGGATGGTTT+GGG 0.364061 4.4:+10077175 None:intergenic
GGCAAAAGCAAAGGCTTCTT+AGG 0.366890 4.4:-10076448 MS.gene28111:CDS
TGGCACAGTATTCTTCATAA+TGG 0.366973 4.4:+10076633 None:intergenic
AGCCATCAGGTGGAGGTGTT+TGG 0.375855 4.4:+10076902 None:intergenic
CTTTAAGTGCAACAAGATAA+GGG 0.376250 4.4:+10076947 None:intergenic
GTGATCCAGTAGTTTCTTGA+TGG 0.389887 4.4:+10077258 None:intergenic
TCTTTAAGTGCAACAAGATA+AGG 0.407309 4.4:+10076946 None:intergenic
GCACTTAAAGAGAATATAAC+TGG 0.408038 4.4:-10076934 MS.gene28111:CDS
AAGAAGGAATTGAAAGGGTT+GGG 0.416848 4.4:-10076498 MS.gene28111:CDS
GGTGGAGATGGTGGAGATGT+TGG 0.421057 4.4:+10077150 None:intergenic
GTTTCTGCTGACAACATTTG+AGG 0.423513 4.4:+10077236 None:intergenic
CTTCAACAACAGTCATGTTA+TGG 0.433837 4.4:+10077373 None:intergenic
ACACATCCATGGCATCTTCA+TGG 0.435000 4.4:-10076736 MS.gene28111:CDS
CAAATGTTGTCAGCAGAAAC+AGG 0.442581 4.4:-10077233 MS.gene28111:CDS
TCCACCATCTCCACCAGCTT+GGG 0.443905 4.4:-10077142 MS.gene28111:CDS
ATAGAGTCTCATTTCTATAT+GGG 0.445190 4.4:-10076538 MS.gene28111:CDS
TAGAGATTCTTAACCACAAA+AGG 0.447645 4.4:+10077330 None:intergenic
ACTCTATCTGAGGTTGTTGG+AGG 0.454902 4.4:+10077054 None:intergenic
CTATAGACGGTGTTCGTCAT+TGG 0.461142 4.4:-10077005 MS.gene28111:CDS
CTCCACCATCTCCACCAGCT+TGG 0.463071 4.4:-10077143 MS.gene28111:CDS
AGGACAACCCCGCCTGGTTT+AGG 0.465849 4.4:-10077213 MS.gene28111:CDS
GAAGCTACCTTCATCCATCA+TGG 0.470885 4.4:-10076476 MS.gene28111:CDS
TTTCTATATGGGAATGGGAG+TGG 0.472301 4.4:-10076527 MS.gene28111:CDS
TGGGTACTTGGATATGGAAA+GGG 0.475912 4.4:-10076703 MS.gene28111:CDS
GAAGAAGGAATTGAAAGGGT+TGG 0.486528 4.4:-10076499 MS.gene28111:CDS
TCTCATTTCTATATGGGAAT+GGG 0.493176 4.4:-10076532 MS.gene28111:CDS
AGGTTTCGATCGGATAATCC+TGG 0.493226 4.4:-10076583 MS.gene28111:CDS
GTCTCATTTCTATATGGGAA+TGG 0.494997 4.4:-10076533 MS.gene28111:CDS
GACTGCTTTGAGGTTTCGAT+CGG 0.497349 4.4:-10076593 MS.gene28111:CDS
ATGACTCTATCTGAGGTTGT+TGG 0.501248 4.4:+10077051 None:intergenic
TGCCAGTGCACTCATTTGGT+TGG 0.501895 4.4:-10076615 MS.gene28111:CDS
TTTGGTGAGCTTTGATTGCA+AGG 0.510484 4.4:+10077091 None:intergenic
TTGGGTACTTGGATATGGAA+AGG 0.514165 4.4:-10076704 MS.gene28111:CDS
GACTCAACATTGTCCCAAGC+TGG 0.516390 4.4:+10077129 None:intergenic
TGATCCAGTAGTTTCTTGAT+GGG 0.518958 4.4:+10077259 None:intergenic
ACTGTGCCAGTGCACTCATT+TGG 0.524117 4.4:-10076619 MS.gene28111:CDS
GATGTTGGTGGCGACCTCAT+TGG 0.527521 4.4:+10077165 None:intergenic
CAAGATAAGGGGTGTGAGGT+AGG 0.528066 4.4:+10076959 None:intergenic
CCTTCATCCATCATGGGTTG+TGG 0.536511 4.4:-10076469 MS.gene28111:CDS
AAGACCCATCAAGAAACTAC+TGG 0.542638 4.4:-10077263 MS.gene28111:CDS
TTATTAAAATCATAGCCATC+AGG 0.546504 4.4:+10076889 None:intergenic
GGAGATGGTGGAGATGTTGG+TGG 0.552505 4.4:+10077153 None:intergenic
ACAAATGCTACTTCTAGCAA+TGG 0.556255 4.4:-10076838 MS.gene28111:CDS
AGAAACAGGACAACCCCGCC+TGG 0.556484 4.4:-10077219 MS.gene28111:CDS
TTGTAAATTGTAATAATGCA+GGG 0.560065 4.4:-10077396 None:intergenic
CCACAACCCATGATGGATGA+AGG 0.564653 4.4:+10076469 None:intergenic
TTGGTGGCGACCTCATTGGA+TGG 0.568529 4.4:+10077169 None:intergenic
ATGGGTTGTGGCAAAAGCAA+AGG 0.574548 4.4:-10076457 MS.gene28111:CDS
TTGTCCCAAGCTGGTGGAGA+TGG 0.577934 4.4:+10077138 None:intergenic
TCATGTCCATGAAGATGCCA+TGG 0.579018 4.4:+10076730 None:intergenic
CAATGAAAAGCCCAAACACC+AGG 0.582233 4.4:+10076565 None:intergenic
AAATCATAGCCATCAGGTGG+AGG 0.584412 4.4:+10076895 None:intergenic
ATGACTGTTGTTGAAGCAGA+TGG 0.592854 4.4:-10077366 MS.gene28111:CDS
AAGCTACCTTCATCCATCAT+GGG 0.594823 4.4:-10076475 MS.gene28111:CDS
GTCCAACCAAATGAGTGCAC+TGG 0.595748 4.4:+10076613 None:intergenic
AAGAATCTCTACATATACTC+AGG 0.600439 4.4:-10077318 MS.gene28111:CDS
TCAACATTGTCCCAAGCTGG+TGG 0.600784 4.4:+10077132 None:intergenic
AACCAAACACCTCCACCTGA+TGG 0.600941 4.4:-10076904 MS.gene28111:CDS
AACACACAAAACACTATAGA+CGG 0.600946 4.4:-10077018 MS.gene28111:CDS
CAAAACTATGACTCTATCTG+AGG 0.612834 4.4:+10077044 None:intergenic
TCCCAAGCTGGTGGAGATGG+TGG 0.622614 4.4:+10077141 None:intergenic
TTTAAGTGCAACAAGATAAG+GGG 0.625406 4.4:+10076948 None:intergenic
ATAATAGTGAGACACATCCA+TGG 0.633125 4.4:-10076747 MS.gene28111:CDS
GCACAGTATTCTTCATAATG+GGG 0.640153 4.4:+10076635 None:intergenic
TTAAAATCATAGCCATCAGG+TGG 0.640896 4.4:+10076892 None:intergenic
GCAACAAGATAAGGGGTGTG+AGG 0.654315 4.4:+10076955 None:intergenic
ACTACCCAAACCATCCAATG+AGG 0.700116 4.4:-10077179 MS.gene28111:CDS
GCTGAAGTTCAATACAACTG+TGG 0.701274 4.4:-10076806 MS.gene28111:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCACCAAATTATAATTTTTT+GGG + chr4.4:10077163-10077182 None:intergenic 15.0%
!!! TTCACCAAATTATAATTTTT+TGG + chr4.4:10077164-10077183 None:intergenic 15.0%
!! AGACCCAAAAAATTATAATT+TGG - chr4.4:10077157-10077176 MS.gene28111:CDS 20.0%
! ATAGAGTCTCATTTCTATAT+GGG - chr4.4:10077281-10077300 MS.gene28111:CDS 25.0%
! TATAGAGTCTCATTTCTATA+TGG - chr4.4:10077280-10077299 MS.gene28111:CDS 25.0%
! TTATTAAAATCATAGCCATC+AGG + chr4.4:10076933-10076952 None:intergenic 25.0%
!! TAATTATGATATTTTCAGCG+TGG - chr4.4:10076950-10076969 MS.gene28111:CDS 25.0%
!!! TTTTGAAGAAGGAATTGAAA+GGG - chr4.4:10077316-10077335 MS.gene28111:CDS 25.0%
!!! TTTTTGAAGAAGGAATTGAA+AGG - chr4.4:10077315-10077334 MS.gene28111:CDS 25.0%
AACACACAAAACACTATAGA+CGG - chr4.4:10076801-10076820 MS.gene28111:CDS 30.0%
AAGAATCTCTACATATACTC+AGG - chr4.4:10076501-10076520 MS.gene28111:CDS 30.0%
CTTCTAGCAATGGAATTTAT+AGG - chr4.4:10076991-10077010 MS.gene28111:CDS 30.0%
CTTTAAGTGCAACAAGATAA+GGG + chr4.4:10076875-10076894 None:intergenic 30.0%
GCACTTAAAGAGAATATAAC+TGG - chr4.4:10076885-10076904 MS.gene28111:CDS 30.0%
TAGAGATTCTTAACCACAAA+AGG + chr4.4:10076492-10076511 None:intergenic 30.0%
TAGTTAAAAATGCCTAAACC+AGG + chr4.4:10076621-10076640 None:intergenic 30.0%
TCTCATTTCTATATGGGAAT+GGG - chr4.4:10077287-10077306 MS.gene28111:CDS 30.0%
TCTTTAAGTGCAACAAGATA+AGG + chr4.4:10076876-10076895 None:intergenic 30.0%
TTTAAGTGCAACAAGATAAG+GGG + chr4.4:10076874-10076893 None:intergenic 30.0%
! ATCTTCATGGACATGATTTT+TGG - chr4.4:10077096-10077115 MS.gene28111:CDS 30.0%
! GAGGTTTGATTGTGTAATTT+TGG + chr4.4:10076749-10076768 None:intergenic 30.0%
! TCTTCATGGACATGATTTTT+GGG - chr4.4:10077097-10077116 MS.gene28111:CDS 30.0%
AAGAAGGAATTGAAAGGGTT+GGG - chr4.4:10077321-10077340 MS.gene28111:CDS 35.0%
ATAATAGTGAGACACATCCA+TGG - chr4.4:10077072-10077091 MS.gene28111:CDS 35.0%
CAAAACTATGACTCTATCTG+AGG + chr4.4:10076778-10076797 None:intergenic 35.0%
CTTCAACAACAGTCATGTTA+TGG + chr4.4:10076449-10076468 None:intergenic 35.0%
GCACAGTATTCTTCATAATG+GGG + chr4.4:10077187-10077206 None:intergenic 35.0%
GGCACAGTATTCTTCATAAT+GGG + chr4.4:10077188-10077207 None:intergenic 35.0%
GTCTCATTTCTATATGGGAA+TGG - chr4.4:10077286-10077305 MS.gene28111:CDS 35.0%
TGATCCAGTAGTTTCTTGAT+GGG + chr4.4:10076563-10076582 None:intergenic 35.0%
TGGCACAGTATTCTTCATAA+TGG + chr4.4:10077189-10077208 None:intergenic 35.0%
TTAAAAATGCCTAAACCAGG+CGG + chr4.4:10076618-10076637 None:intergenic 35.0%
TTAAAATCATAGCCATCAGG+TGG + chr4.4:10076930-10076949 None:intergenic 35.0%
! ACAAATGCTACTTCTAGCAA+TGG - chr4.4:10076981-10077000 MS.gene28111:CDS 35.0%
! ACACTATGTTGATCCTTTTG+TGG - chr4.4:10076476-10076495 MS.gene28111:CDS 35.0%
!!! GATTTTTGGGTACTTGGATA+TGG - chr4.4:10077110-10077129 MS.gene28111:CDS 35.0%
AAGACCCATCAAGAAACTAC+TGG - chr4.4:10076556-10076575 MS.gene28111:CDS 40.0%
AAGCTACCTTCATCCATCAT+GGG - chr4.4:10077344-10077363 MS.gene28111:CDS 40.0%
ATCGGATAATCCTGGTGTTT+GGG - chr4.4:10077244-10077263 MS.gene28111:CDS 40.0%
ATGACTGTTGTTGAAGCAGA+TGG - chr4.4:10076453-10076472 MS.gene28111:CDS 40.0%
CAAATGTTGTCAGCAGAAAC+AGG - chr4.4:10076586-10076605 MS.gene28111:CDS 40.0%
GAAGAAGGAATTGAAAGGGT+TGG - chr4.4:10077320-10077339 MS.gene28111:CDS 40.0%
GCTGAAGTTCAATACAACTG+TGG - chr4.4:10077013-10077032 MS.gene28111:CDS 40.0%
GTGATCCAGTAGTTTCTTGA+TGG + chr4.4:10076564-10076583 None:intergenic 40.0%
GTTTCTGCTGACAACATTTG+AGG + chr4.4:10076586-10076605 None:intergenic 40.0%
TAAAAATGCCTAAACCAGGC+GGG + chr4.4:10076617-10076636 None:intergenic 40.0%
TGGGTACTTGGATATGGAAA+GGG - chr4.4:10077116-10077135 MS.gene28111:CDS 40.0%
TTGGGTACTTGGATATGGAA+AGG - chr4.4:10077115-10077134 MS.gene28111:CDS 40.0%
TTTCTATATGGGAATGGGAG+TGG - chr4.4:10077292-10077311 MS.gene28111:CDS 40.0%
! ATGACTCTATCTGAGGTTGT+TGG + chr4.4:10076771-10076790 None:intergenic 40.0%
! TTTGGTGAGCTTTGATTGCA+AGG + chr4.4:10076731-10076750 None:intergenic 40.0%
!! ATGGGAGTGGTTTTTGAAGA+AGG - chr4.4:10077305-10077324 MS.gene28111:CDS 40.0%
!!! GGACATGATTTTTGGGTACT+TGG - chr4.4:10077104-10077123 MS.gene28111:CDS 40.0%
AAAAATGCCTAAACCAGGCG+GGG + chr4.4:10076616-10076635 None:intergenic 45.0%
AAATCATAGCCATCAGGTGG+AGG + chr4.4:10076927-10076946 None:intergenic 45.0%
ACACATCCATGGCATCTTCA+TGG - chr4.4:10077083-10077102 MS.gene28111:CDS 45.0%
ACTACCCAAACCATCCAATG+AGG - chr4.4:10076640-10076659 MS.gene28111:CDS 45.0%
AGGTTTCGATCGGATAATCC+TGG - chr4.4:10077236-10077255 MS.gene28111:CDS 45.0%
CAATGAAAAGCCCAAACACC+AGG + chr4.4:10077257-10077276 None:intergenic 45.0%
CATTTGGTTGGACTGCTTTG+AGG - chr4.4:10077216-10077235 MS.gene28111:CDS 45.0%
CTATAGACGGTGTTCGTCAT+TGG - chr4.4:10076814-10076833 MS.gene28111:CDS 45.0%
GAAGCTACCTTCATCCATCA+TGG - chr4.4:10077343-10077362 MS.gene28111:CDS 45.0%
GATCGGATAATCCTGGTGTT+TGG - chr4.4:10077243-10077262 MS.gene28111:CDS 45.0%
GGCAAAAGCAAAGGCTTCTT+AGG - chr4.4:10077371-10077390 MS.gene28111:CDS 45.0%
TCATGTCCATGAAGATGCCA+TGG + chr4.4:10077092-10077111 None:intergenic 45.0%
! ACTCTATCTGAGGTTGTTGG+AGG + chr4.4:10076768-10076787 None:intergenic 45.0%
! ATGGGTTGTGGCAAAAGCAA+AGG - chr4.4:10077362-10077381 MS.gene28111:CDS 45.0%
!! GACTGCTTTGAGGTTTCGAT+CGG - chr4.4:10077226-10077245 MS.gene28111:CDS 45.0%
AACCAAACACCTCCACCTGA+TGG - chr4.4:10076915-10076934 MS.gene28111:CDS 50.0%
ACTGTGCCAGTGCACTCATT+TGG - chr4.4:10077200-10077219 MS.gene28111:CDS 50.0%
GACTCAACATTGTCCCAAGC+TGG + chr4.4:10076693-10076712 None:intergenic 50.0%
GCGACCTCATTGGATGGTTT+GGG + chr4.4:10076647-10076666 None:intergenic 50.0%
GTCCAACCAAATGAGTGCAC+TGG + chr4.4:10077209-10077228 None:intergenic 50.0%
TCAACATTGTCCCAAGCTGG+TGG + chr4.4:10076690-10076709 None:intergenic 50.0%
TGCCAGTGCACTCATTTGGT+TGG - chr4.4:10077204-10077223 MS.gene28111:CDS 50.0%
! CAAGATAAGGGGTGTGAGGT+AGG + chr4.4:10076863-10076882 None:intergenic 50.0%
! CCTTCATCCATCATGGGTTG+TGG - chr4.4:10077350-10077369 MS.gene28111:CDS 50.0%
! GCAACAAGATAAGGGGTGTG+AGG + chr4.4:10076867-10076886 None:intergenic 50.0%
! GCTTTTGCCACAACCCATGA+TGG + chr4.4:10077360-10077379 None:intergenic 50.0%
!! CCACAACCCATGATGGATGA+AGG + chr4.4:10077353-10077372 None:intergenic 50.0%
GGCGACCTCATTGGATGGTT+TGG + chr4.4:10076648-10076667 None:intergenic 55.0%
TCCACCATCTCCACCAGCTT+GGG - chr4.4:10076677-10076696 MS.gene28111:CDS 55.0%
TTGTCCCAAGCTGGTGGAGA+TGG + chr4.4:10076684-10076703 None:intergenic 55.0%
!! AGCCATCAGGTGGAGGTGTT+TGG + chr4.4:10076920-10076939 None:intergenic 55.0%
!! GATGTTGGTGGCGACCTCAT+TGG + chr4.4:10076657-10076676 None:intergenic 55.0%
!! GGAGATGGTGGAGATGTTGG+TGG + chr4.4:10076669-10076688 None:intergenic 55.0%
!! GGTGGAGATGGTGGAGATGT+TGG + chr4.4:10076672-10076691 None:intergenic 55.0%
!! TTGGTGGCGACCTCATTGGA+TGG + chr4.4:10076653-10076672 None:intergenic 55.0%
AGAAACAGGACAACCCCGCC+TGG - chr4.4:10076600-10076619 MS.gene28111:CDS 60.0%
AGGACAACCCCGCCTGGTTT+AGG - chr4.4:10076606-10076625 MS.gene28111:CDS 60.0%
CTCCACCATCTCCACCAGCT+TGG - chr4.4:10076676-10076695 MS.gene28111:CDS 60.0%
TCCCAAGCTGGTGGAGATGG+TGG + chr4.4:10076681-10076700 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 10076438 10077403 10076438 ID=MS.gene28111
chr4.4 mRNA 10076438 10077403 10076438 ID=MS.gene28111.t1;Parent=MS.gene28111
chr4.4 exon 10076438 10077403 10076438 ID=MS.gene28111.t1.exon1;Parent=MS.gene28111.t1
chr4.4 CDS 10076438 10077403 10076438 ID=cds.MS.gene28111.t1;Parent=MS.gene28111.t1
Gene Sequence

>MS.gene28111

ATGCAGGGCCATAACATGACTGTTGTTGAAGCAGATGGACACTATGTTGATCCTTTTGTGGTTAAGAATCTCTACATATACTCAGGTGAAACATACTCAGTTCTAGTCAAAACTGATCAAGACCCATCAAGAAACTACTGGATCACCTCAAATGTTGTCAGCAGAAACAGGACAACCCCGCCTGGTTTAGGCATTTTTAACTACTACCCAAACCATCCAATGAGGTCGCCACCAACATCTCCACCATCTCCACCAGCTTGGGACAATGTTGAGTCAAGACATACTCAAAGCCTTGCAATCAAAGCTCACCAAAATTACACAATCAAACCTCCAACAACCTCAGATAGAGTCATAGTTTTGCTCAACACACAAAACACTATAGACGGTGTTCGTCATTGGTCTGTTAACAACGTATCATTTTTCCTACCTCACACCCCTTATCTTGTTGCACTTAAAGAGAATATAACTGGTGAATTCAACCAAACACCTCCACCTGATGGCTATGATTTTAATAATTATGATATTTTCAGCGTGGCTAACAACACAAATGCTACTTCTAGCAATGGAATTTATAGGCTGAAGTTCAATACAACTGTGGATATTATACTACAAAATGCAAACACTATGAATAAAAATAATAGTGAGACACATCCATGGCATCTTCATGGACATGATTTTTGGGTACTTGGATATGGAAAGGGTAAGTTTGATGTGAACAAAGACCCAAAAAATTATAATTTGGTGAACCCCATTATGAAGAATACTGTGCCAGTGCACTCATTTGGTTGGACTGCTTTGAGGTTTCGATCGGATAATCCTGGTGTTTGGGCTTTTCATTGTCATATAGAGTCTCATTTCTATATGGGAATGGGAGTGGTTTTTGAAGAAGGAATTGAAAGGGTTGGGAAGCTACCTTCATCCATCATGGGTTGTGGCAAAAGCAAAGGCTTCTTAGGCCATAATTAA

Protein sequence

>MS.gene28111.t1

MQGHNMTVVEADGHYVDPFVVKNLYIYSGETYSVLVKTDQDPSRNYWITSNVVSRNRTTPPGLGIFNYYPNHPMRSPPTSPPSPPAWDNVESRHTQSLAIKAHQNYTIKPPTTSDRVIVLLNTQNTIDGVRHWSVNNVSFFLPHTPYLVALKENITGEFNQTPPPDGYDFNNYDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVLGYGKGKFDVNKDPKNYNLVNPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEEGIERVGKLPSSIMGCGKSKGFLGHN