Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28709.t1 | XP_013457315.1 | 95.3 | 950 | 40 | 2 | 1 | 949 | 1 | 946 | 0.00E+00 | 1793.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28709.t1 | Q9C5Q8 | 47.8 | 978 | 428 | 17 | 8 | 947 | 1 | 933 | 2.0e-228 | 793.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28709.t1 | A0A072UPT2 | 95.3 | 950 | 40 | 2 | 1 | 949 | 1 | 946 | 0.0e+00 | 1793.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene28709 | 0.854763 | 9.91E-62 | -1.69E-46 |
| MS.gene049343 | MS.gene28709 | 0.833966 | 3.94E-56 | -1.69E-46 |
| MS.gene049435 | MS.gene28709 | 0.816147 | 6.42E-52 | -1.69E-46 |
| MS.gene049452 | MS.gene28709 | 0.823108 | 1.65E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene28709 | 0.810257 | 1.26E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene28709 | 0.807162 | 5.78E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene28709 | 0.804103 | 2.54E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene28709 | 0.849211 | 3.74E-60 | -1.69E-46 |
| MS.gene050759 | MS.gene28709 | 0.839309 | 1.71E-57 | -1.69E-46 |
| MS.gene050962 | MS.gene28709 | 0.830472 | 2.88E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene28709 | 0.815477 | 9.06E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene28709 | 0.812975 | 3.23E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene28709 | 0.8094 | 1.93E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene28709 | 0.837791 | 4.22E-57 | -1.69E-46 |
| MS.gene05215 | MS.gene28709 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene28709 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene28709 | 0.802009 | 6.88E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene28709 | 0.818221 | 2.19E-52 | -1.69E-46 |
| MS.gene052669 | MS.gene28709 | 0.815231 | 1.03E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene28709 | 0.802233 | 6.18E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene28709 | 0.802916 | 4.47E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene28709 | 0.824303 | 8.68E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene28709 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene053080 | MS.gene28709 | 0.812198 | 4.78E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene28709 | 0.848331 | 6.56E-60 | -1.69E-46 |
| MS.gene053931 | MS.gene28709 | 0.809027 | 2.32E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene28709 | 0.806108 | 9.65E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene28709 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene28709 | 0.822742 | 2.01E-53 | -1.69E-46 |
| MS.gene054658 | MS.gene28709 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene28709 | 0.801898 | 7.24E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene28709 | 0.827702 | 1.35E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene28709 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene28709 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene28709 | 0.844065 | 9.52E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene28709 | 0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene28709 | 0.807493 | 4.92E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene28709 | 0.833657 | 4.70E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene28709 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene28709 | 0.810986 | 8.78E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene28709 | 0.829705 | 4.43E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene28709 | 0.805623 | 1.22E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene28709 | 0.802473 | 5.52E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene28709 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene28709 | 0.804188 | 2.44E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene28709 | 0.818033 | 2.42E-52 | -1.69E-46 |
| MS.gene058549 | MS.gene28709 | 0.803421 | 3.51E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene28709 | 0.814033 | 1.89E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene28709 | 0.832568 | 8.78E-56 | -1.69E-46 |
| MS.gene05979 | MS.gene28709 | 0.818927 | 1.52E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene28709 | 0.815648 | 8.30E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene28709 | 0.80757 | 4.74E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene28709 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene28709 | 0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene28709 | 0.850767 | 1.37E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28709.t1 | MTR_4g094545 | 95.263 | 950 | 40 | 2 | 1 | 949 | 1 | 946 | 0.0 | 1860 |
| MS.gene28709.t1 | MTR_4g094545 | 95.238 | 735 | 30 | 2 | 216 | 949 | 1 | 731 | 0.0 | 1443 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28709.t1 | AT4G20910 | 48.737 | 950 | 454 | 13 | 8 | 944 | 1 | 930 | 0.0 | 840 |
| MS.gene28709.t1 | AT4G20910 | 48.737 | 950 | 454 | 13 | 8 | 944 | 1 | 930 | 0.0 | 840 |
| MS.gene28709.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 9.27e-179 | 537 |
| MS.gene28709.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 9.27e-179 | 537 |
| MS.gene28709.t1 | AT4G20920 | 41.858 | 786 | 386 | 17 | 8 | 763 | 1 | 745 | 9.27e-179 | 537 |
| MS.gene28709.t1 | AT4G20920 | 41.221 | 786 | 375 | 18 | 8 | 763 | 1 | 729 | 5.85e-171 | 516 |
| MS.gene28709.t1 | AT4G20920 | 41.221 | 786 | 375 | 18 | 8 | 763 | 1 | 729 | 5.85e-171 | 516 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTGCAGCTTGATTT+TGG | 0.099534 | 4.3:+19323099 | MS.gene28709:intron |
| ACTACATTGTATTCAAAATT+TGG | 0.173974 | 4.3:-19325496 | None:intergenic |
| CGTCCAATTCTTCTTGTTCT+TGG | 0.180888 | 4.3:-19325543 | None:intergenic |
| GAAGATCAAGCTTGTCTCTT+TGG | 0.252238 | 4.3:+19325424 | MS.gene28709:CDS |
| GTGAAATAAAGTTGCTTTCT+CGG | 0.254391 | 4.3:+19322131 | MS.gene28709:CDS |
| CTCTGGAGGTTCTGCAACTT+TGG | 0.257411 | 4.3:-19322912 | None:intergenic |
| AAGATCAAGCTTGTCTCTTT+GGG | 0.262347 | 4.3:+19325425 | MS.gene28709:CDS |
| GTAGCAGCCCTTACTATATA+TGG | 0.276604 | 4.3:-19320622 | None:intergenic |
| TTTCTATACAGGATGCTTCT+AGG | 0.281845 | 4.3:+19321803 | MS.gene28709:intron |
| TGTCCAAAGCAATCAGATTC+AGG | 0.283086 | 4.3:+19322097 | MS.gene28709:CDS |
| TTACAAGACATGTTAGTAAA+TGG | 0.283885 | 4.3:+19322433 | MS.gene28709:CDS |
| TAACTGTTCGGTTATATTAC+AGG | 0.285137 | 4.3:+19321209 | MS.gene28709:CDS |
| ATAGCCATTATAATGTAATA+TGG | 0.293113 | 4.3:+19325797 | MS.gene28709:CDS |
| CAGACAGCAATGACAGAAAT+AGG | 0.302121 | 4.3:-19320529 | None:intergenic |
| TCTATAATATCTTGTGGATA+TGG | 0.304654 | 4.3:-19320703 | None:intergenic |
| ATTCCCATATTACATTATAA+TGG | 0.306928 | 4.3:-19325801 | None:intergenic |
| GCCAACGGGGCCTCTGTAAA+TGG | 0.312707 | 4.3:+19322073 | MS.gene28709:CDS |
| GATTTACCACAAGAGTTAAC+TGG | 0.321328 | 4.3:+19321891 | MS.gene28709:CDS |
| TTACATCTGAACAACATATC+TGG | 0.321631 | 4.3:+19320665 | MS.gene28709:CDS |
| TATTAGTTATTCAGTATCTT+TGG | 0.322059 | 4.3:+19322522 | MS.gene28709:CDS |
| AGATATTATAGAGTCGTTAA+TGG | 0.324864 | 4.3:+19320714 | MS.gene28709:CDS |
| ATCCGCTCAGTGGTCACATT+CGG | 0.329096 | 4.3:+19320467 | MS.gene28709:CDS |
| GTAGAAACAATAAGAATCTT+TGG | 0.332039 | 4.3:-19325472 | None:intergenic |
| TTTGAGAGGATGACTTATAA+TGG | 0.337624 | 4.3:-19321984 | None:intergenic |
| GCCTGCTCCATTCTTTCCTC+TGG | 0.340683 | 4.3:-19322929 | None:intergenic |
| GTTCTTGTCCCACCAGCATC+TGG | 0.347189 | 4.3:-19324459 | None:intergenic |
| GTTCCCCTGAGGATTGTTAT+AGG | 0.348614 | 4.3:+19322176 | MS.gene28709:CDS |
| GTATTATAGCCTTCGGTGTA+AGG | 0.357215 | 4.3:-19318236 | None:intergenic |
| AGAAGATAAGGACGGCATTA+TGG | 0.360060 | 4.3:-19322731 | None:intergenic |
| ACTGGAGGGGTTCCCTTCCT+AGG | 0.364152 | 4.3:+19321909 | MS.gene28709:CDS |
| GTTGAGGCCATACGCATTCC+TGG | 0.367253 | 4.3:+19320766 | MS.gene28709:CDS |
| ATTCTTCTTGTTCTTGGGTA+GGG | 0.367654 | 4.3:-19325537 | None:intergenic |
| TGGTCCTTCCATATATAGTA+AGG | 0.370607 | 4.3:+19320614 | MS.gene28709:CDS |
| AGGTTGCATGGGTTTGATAT+TGG | 0.381505 | 4.3:+19324534 | MS.gene28709:CDS |
| TACCCAAGAACAAGAAGAAT+TGG | 0.381585 | 4.3:+19325540 | MS.gene28709:CDS |
| ATCCCTGAATCTGATTGCTT+TGG | 0.384080 | 4.3:-19322100 | None:intergenic |
| GTCCAATTCTTCTTGTTCTT+GGG | 0.384367 | 4.3:-19325542 | None:intergenic |
| TGATATTGGTACTTGTTTAG+AGG | 0.385962 | 4.3:+19324548 | MS.gene28709:CDS |
| AGCTTGTCTCTTTGGGGATG+TGG | 0.389014 | 4.3:+19325432 | MS.gene28709:CDS |
| AGAATCACATGCTACTACTT+TGG | 0.389905 | 4.3:+19323009 | MS.gene28709:CDS |
| AATGTGGAGTTTAGTGGGGT+TGG | 0.390171 | 4.3:+19325676 | MS.gene28709:CDS |
| AGCTGTGAGTAGTGCCTCTC+TGG | 0.390358 | 4.3:-19321855 | None:intergenic |
| TGTGGCTCCAATAGGAATAT+AGG | 0.393034 | 4.3:+19320971 | MS.gene28709:intron |
| GCTATAATACACCAAAAGTT+TGG | 0.393808 | 4.3:+19318249 | MS.gene28709:CDS |
| GATATCATTGCAAATGAACT+TGG | 0.395132 | 4.3:+19320850 | MS.gene28709:CDS |
| CTCTGGTCCACTCAAATTTG+TGG | 0.398261 | 4.3:-19325606 | None:intergenic |
| GTGGAGTTTAGTGGGGTTGG+TGG | 0.404034 | 4.3:+19325679 | MS.gene28709:CDS |
| TCCGCTCAGTGGTCACATTC+GGG | 0.404773 | 4.3:+19320468 | MS.gene28709:CDS |
| TGCTTCTAGGGAAGACTCCC+GGG | 0.405633 | 4.3:+19321816 | MS.gene28709:CDS |
| TAGAGATCCTTCAAAATGAA+TGG | 0.409255 | 4.3:-19321083 | None:intergenic |
| TGGTGTTGATATTTCACAAA+AGG | 0.412817 | 4.3:+19323185 | MS.gene28709:CDS |
| TTCTTCTTGTTCTTGGGTAG+GGG | 0.415292 | 4.3:-19325536 | None:intergenic |
| GAAACTTGCATGACTGTAAG+AGG | 0.415750 | 4.3:-19325573 | None:intergenic |
| AATTCTTCTTGTTCTTGGGT+AGG | 0.417688 | 4.3:-19325538 | None:intergenic |
| TTATTCAGTATCTTTGGTTG+TGG | 0.422053 | 4.3:+19322528 | MS.gene28709:CDS |
| ACTCTTGTGGTAAATCTTGA+AGG | 0.423724 | 4.3:-19321884 | None:intergenic |
| TGATTCACAAGAATGCATTC+AGG | 0.428117 | 4.3:+19320744 | MS.gene28709:CDS |
| AATGAGTTTGAGTTTGAGAT+TGG | 0.429249 | 4.3:+19322586 | MS.gene28709:CDS |
| AATTATAATGTGGAGTTTAG+TGG | 0.438708 | 4.3:+19325670 | MS.gene28709:CDS |
| TTCAGTATCTTTGGTTGTGG+AGG | 0.439928 | 4.3:+19322531 | MS.gene28709:CDS |
| ATTATAATGTGGAGTTTAGT+GGG | 0.440196 | 4.3:+19325671 | MS.gene28709:CDS |
| TGCTTCCTATAACAATCCTC+AGG | 0.441318 | 4.3:-19322181 | None:intergenic |
| CATGGACAGACACCAGAGTC+TGG | 0.442267 | 4.3:-19322481 | None:intergenic |
| AATGCAGGTGATTGAACATA+TGG | 0.443555 | 4.3:+19325399 | MS.gene28709:intron |
| GGGCCAATGTTCTGATTTCA+AGG | 0.444876 | 4.3:+19320884 | MS.gene28709:CDS |
| TGCTCCATTCTTTCCTCTGG+AGG | 0.447746 | 4.3:-19322926 | None:intergenic |
| GCAAGGGCAAGATACTTGTC+TGG | 0.448127 | 4.3:+19321109 | MS.gene28709:CDS |
| ACTTCGCTGGAGAAAATTGC+TGG | 0.452004 | 4.3:+19323165 | MS.gene28709:CDS |
| TACACTGCATTGCATAAAGA+TGG | 0.458498 | 4.3:-19322378 | None:intergenic |
| CAACCAGTGGGCATCTGACT+TGG | 0.460111 | 4.3:+19325636 | MS.gene28709:CDS |
| CATACGCATTCCTGGTTCAA+TGG | 0.462240 | 4.3:+19320774 | MS.gene28709:CDS |
| GTTCATTTGCAATGATATCA+AGG | 0.464150 | 4.3:-19320846 | None:intergenic |
| CAATTACAATCTCTCTGAAA+AGG | 0.464973 | 4.3:-19322336 | None:intergenic |
| GAGGTTCAGACAGGCGATGC+TGG | 0.468726 | 4.3:-19321955 | None:intergenic |
| TCTTCTTGTTCTTGGGTAGG+GGG | 0.468837 | 4.3:-19325535 | None:intergenic |
| TCGTGTTGAAATAAGCATAC+TGG | 0.468944 | 4.3:-19322663 | None:intergenic |
| CCACTGGTTGAACTGTTCTC+TGG | 0.472971 | 4.3:-19325623 | None:intergenic |
| ATGTGATTGAATGTGCCAAC+GGG | 0.477723 | 4.3:+19322059 | MS.gene28709:CDS |
| ACAAGAATGCATTCAGGTTG+AGG | 0.478281 | 4.3:+19320750 | MS.gene28709:CDS |
| GTCACATTCGGGCTAGTTTG+AGG | 0.478959 | 4.3:+19320479 | MS.gene28709:CDS |
| TTCTATACAGGATGCTTCTA+GGG | 0.481021 | 4.3:+19321804 | MS.gene28709:intron |
| GACTGCTGATCTTACTCCTC+AGG | 0.481482 | 4.3:+19319467 | MS.gene28709:CDS |
| AACGGATTTGACTCCACCTC+AGG | 0.481788 | 4.3:-19320589 | None:intergenic |
| TAGCCATTATAATGTAATAT+GGG | 0.483058 | 4.3:+19325798 | MS.gene28709:CDS |
| CTTGTCACAACTGTAAGTTC+TGG | 0.483370 | 4.3:-19318384 | None:intergenic |
| GTCTCATAGAGCCGTTCAAA+AGG | 0.485529 | 4.3:-19322277 | None:intergenic |
| ATGCTTCTAGGGAAGACTCC+CGG | 0.486091 | 4.3:+19321815 | MS.gene28709:CDS |
| AATGAACTTGGGTTAGAAGA+TGG | 0.487425 | 4.3:+19320862 | MS.gene28709:CDS |
| GTCTCTCAAAATGAATGTCC+AGG | 0.487786 | 4.3:+19318309 | MS.gene28709:CDS |
| TATCTATATCAGTATGCGTC+TGG | 0.487812 | 4.3:-19325777 | None:intergenic |
| GAACGGCTCTATGAGACTGC+AGG | 0.489975 | 4.3:+19322283 | MS.gene28709:CDS |
| TCCACTCGTTGCTTCGAAAG+TGG | 0.491008 | 4.3:-19322965 | None:intergenic |
| TCAGTATCTTTGGTTGTGGA+GGG | 0.493622 | 4.3:+19322532 | MS.gene28709:CDS |
| CATGACTTTGATGATTCAGT+TGG | 0.494187 | 4.3:-19322010 | None:intergenic |
| CCTCATTGAAACTTCTATCA+TGG | 0.495677 | 4.3:+19322224 | MS.gene28709:CDS |
| GGTGTTGATATTTCACAAAA+GGG | 0.495830 | 4.3:+19323186 | MS.gene28709:CDS |
| TATAGAGTCGTTAATGGAAG+AGG | 0.498379 | 4.3:+19320720 | MS.gene28709:CDS |
| ATAGCCTTCGGTGTAAGGGC+TGG | 0.499378 | 4.3:-19318231 | None:intergenic |
| TGCTCGACAATCATATCTAC+TGG | 0.502229 | 4.3:+19321027 | MS.gene28709:CDS |
| ATGAGTTTGAGTTTGAGATT+GGG | 0.503837 | 4.3:+19322587 | MS.gene28709:CDS |
| TTTGAGTTTGAGATTGGGGT+TGG | 0.504481 | 4.3:+19322592 | MS.gene28709:CDS |
| GTTTGCAGCTTAAAGATTGA+AGG | 0.507154 | 4.3:+19322457 | MS.gene28709:CDS |
| ATGAACTTGGGTTAGAAGAT+GGG | 0.510409 | 4.3:+19320863 | MS.gene28709:CDS |
| ATGTGGATCTGGAAGCTTGT+TGG | 0.511656 | 4.3:+19323122 | MS.gene28709:CDS |
| GGATAATTTGTAAATTCCCC+CGG | 0.513841 | 4.3:-19321834 | None:intergenic |
| TCTACGAGGATGTAACTGTT+CGG | 0.516452 | 4.3:+19321197 | MS.gene28709:CDS |
| ATAAAGATGGCCATTCTGAA+TGG | 0.516494 | 4.3:-19322365 | None:intergenic |
| AAATGCTTGCTATGTGGTAG+AGG | 0.517443 | 4.3:+19318275 | MS.gene28709:CDS |
| TTGCTGTGTTCAAAAGAGAA+TGG | 0.518521 | 4.3:+19325737 | MS.gene28709:CDS |
| GGGTCTTACACGGGCTGCAA+AGG | 0.518931 | 4.3:+19323206 | MS.gene28709:CDS |
| TCCAGAGGAAAGAATGGAGC+AGG | 0.519203 | 4.3:+19322928 | MS.gene28709:CDS |
| GCTAAATTACACAACTTCGC+TGG | 0.527947 | 4.3:+19323152 | MS.gene28709:CDS |
| TGAGTTTGAGTTTGAGATTG+GGG | 0.529855 | 4.3:+19322588 | MS.gene28709:CDS |
| TGTAATGAATTTGCACACAT+TGG | 0.532539 | 4.3:-19322415 | None:intergenic |
| AATATCAAACCCATGCAACC+TGG | 0.534074 | 4.3:-19324532 | None:intergenic |
| CTGGAGGGGTTCCCTTCCTA+GGG | 0.534132 | 4.3:+19321910 | MS.gene28709:CDS |
| ATATCATTGCAAATGAACTT+GGG | 0.536376 | 4.3:+19320851 | MS.gene28709:CDS |
| AGAGCAATCTGCTGCGGAGA+TGG | 0.537240 | 4.3:+19318431 | MS.gene28709:CDS |
| ATTATAATGTAATATGGGAA+TGG | 0.539053 | 4.3:+19325803 | MS.gene28709:CDS |
| TACAAAGAATATCCCTAGGA+AGG | 0.539793 | 4.3:-19321922 | None:intergenic |
| TTGAAGGATCTCTAAATGCA+AGG | 0.539876 | 4.3:+19321092 | MS.gene28709:CDS |
| AAGTAACTCACTAGAAGATA+AGG | 0.540577 | 4.3:-19322743 | None:intergenic |
| TGCTGTGATTTCATTCATTG+AGG | 0.544473 | 4.3:+19322615 | MS.gene28709:CDS |
| AACGACTCTATAATATCTTG+TGG | 0.544982 | 4.3:-19320709 | None:intergenic |
| GTCCAAAGCAATCAGATTCA+GGG | 0.545820 | 4.3:+19322098 | MS.gene28709:CDS |
| TCGAGCAGCAAAGAACAGTC+TGG | 0.546354 | 4.3:-19321011 | None:intergenic |
| TTAGATGCAAATCCAGATGC+TGG | 0.546622 | 4.3:+19324447 | MS.gene28709:CDS |
| ACTCGTTGCTTCGAAAGTGG+AGG | 0.548386 | 4.3:-19322962 | None:intergenic |
| AAGATTGAAGGTCCAGACTC+TGG | 0.551436 | 4.3:+19322469 | MS.gene28709:CDS |
| ATAGAGTCGTTAATGGAAGA+GGG | 0.553839 | 4.3:+19320721 | MS.gene28709:CDS |
| TGAAGGATCTCTAAATGCAA+GGG | 0.558644 | 4.3:+19321093 | MS.gene28709:CDS |
| TATTATAGCCTTCGGTGTAA+GGG | 0.559881 | 4.3:-19318235 | None:intergenic |
| GGTCCTTCCATATATAGTAA+GGG | 0.560300 | 4.3:+19320615 | MS.gene28709:CDS |
| CAGCCAAGTCAGATGCCCAC+TGG | 0.560908 | 4.3:-19325639 | None:intergenic |
| TATTTCATACTCCACACAGC+AGG | 0.561668 | 4.3:-19322882 | None:intergenic |
| TCCATTTACAGAGGCCCCGT+TGG | 0.563920 | 4.3:-19322074 | None:intergenic |
| ACCACAAGAGTTAACTGGAG+GGG | 0.564091 | 4.3:+19321896 | MS.gene28709:CDS |
| GCAATCTGTGAAGCAAAACC+TGG | 0.572230 | 4.3:-19325718 | None:intergenic |
| CATTGAACCAGGAATGCGTA+TGG | 0.572396 | 4.3:-19320773 | None:intergenic |
| ACCCCTCCAGTTAACTCTTG+TGG | 0.573297 | 4.3:-19321897 | None:intergenic |
| TGTGGTAGAGGAAGTGAAAG+AGG | 0.575307 | 4.3:+19318287 | MS.gene28709:CDS |
| TTGTCTGGGCAAGATATAGT+TGG | 0.579218 | 4.3:+19321124 | MS.gene28709:CDS |
| GTTGTGATGCAGATGTCTGT+TGG | 0.579624 | 4.3:+19322640 | MS.gene28709:CDS |
| TTTCACAAAAGGGTCTTACA+CGG | 0.579841 | 4.3:+19323196 | MS.gene28709:CDS |
| AGAACCTCCAGAGGAAAGAA+TGG | 0.579935 | 4.3:+19322922 | MS.gene28709:CDS |
| TCTGGTGTCTGTCCATGCAA+TGG | 0.586141 | 4.3:+19322487 | MS.gene28709:CDS |
| TGGAAAAGAGAGGTTCAGAC+AGG | 0.589880 | 4.3:-19321964 | None:intergenic |
| AAGAACAAGAAGAATTGGAC+GGG | 0.591882 | 4.3:+19325545 | MS.gene28709:CDS |
| CTCGTTGCTTCGAAAGTGGA+GGG | 0.592685 | 4.3:-19322961 | None:intergenic |
| TGTGATTTCATTCATTGAGG+AGG | 0.593480 | 4.3:+19322618 | MS.gene28709:CDS |
| ATACCTTGAAATCAGAACAT+TGG | 0.594025 | 4.3:-19320887 | None:intergenic |
| GACAATCATATCTACTGGAT+CGG | 0.594881 | 4.3:+19321032 | MS.gene28709:CDS |
| GTCTGAGGAATGCTTAACCC+TGG | 0.596255 | 4.3:-19318327 | None:intergenic |
| TTATAATGTGGAGTTTAGTG+GGG | 0.596456 | 4.3:+19325672 | MS.gene28709:CDS |
| CAAGGTAAAGATCCATTGCA+TGG | 0.596851 | 4.3:-19322499 | None:intergenic |
| AAAGTTGCTTTCTCGGTGTG+CGG | 0.598256 | 4.3:+19322138 | MS.gene28709:CDS |
| TAAAGAGATGGCCTCGTCTG+AGG | 0.598998 | 4.3:-19318342 | None:intergenic |
| TGAACTTGGGTTAGAAGATG+GGG | 0.600500 | 4.3:+19320864 | MS.gene28709:CDS |
| ATTGGTCAATCCATTCAGAA+TGG | 0.601077 | 4.3:+19322355 | MS.gene28709:CDS |
| CTGGAAGCTGCAGTGTGCAA+CGG | 0.601473 | 4.3:-19318365 | None:intergenic |
| GATGCAATCTTAGCATGCAT+CGG | 0.605209 | 4.3:+19321148 | MS.gene28709:CDS |
| AAGTCAGTTATTCTTTACGA+AGG | 0.605710 | 4.3:+19324489 | MS.gene28709:CDS |
| CAAGGGCAAGATACTTGTCT+GGG | 0.609993 | 4.3:+19321110 | MS.gene28709:CDS |
| TGCGGAGATGGCTATAGAGA+AGG | 0.612624 | 4.3:+19318443 | MS.gene28709:CDS |
| ACAAAGAATATCCCTAGGAA+GGG | 0.615809 | 4.3:-19321921 | None:intergenic |
| CAAGAACAAGAAGAATTGGA+CGG | 0.620185 | 4.3:+19325544 | MS.gene28709:CDS |
| TTCACAAAAGGGTCTTACAC+GGG | 0.620229 | 4.3:+19323197 | MS.gene28709:CDS |
| AAACTTTCTTGTGCATCCTG+AGG | 0.621220 | 4.3:-19319483 | None:intergenic |
| GATGCAAATCCAGATGCTGG+TGG | 0.621381 | 4.3:+19324450 | MS.gene28709:CDS |
| TCCACTTTCGAAGCAACGAG+TGG | 0.622786 | 4.3:+19322964 | MS.gene28709:CDS |
| CAGAACTTACAGTTGTGACA+AGG | 0.625508 | 4.3:+19318385 | MS.gene28709:CDS |
| ATAATGACCACAAATTTGAG+TGG | 0.625955 | 4.3:+19325599 | MS.gene28709:CDS |
| GGATGCAGAGCAATCTGCTG+CGG | 0.627574 | 4.3:+19318425 | MS.gene28709:CDS |
| AAAACCAGCCCTTACACCGA+AGG | 0.628957 | 4.3:+19318227 | MS.gene28709:CDS |
| GCTTCTAGGGAAGACTCCCG+GGG | 0.629224 | 4.3:+19321817 | MS.gene28709:CDS |
| AAACTTGCATGACTGTAAGA+GGG | 0.629499 | 4.3:-19325572 | None:intergenic |
| GGGCATCTGACTTGGCTGCA+CGG | 0.629721 | 4.3:+19325644 | MS.gene28709:CDS |
| TCTCTCAAAATGAATGTCCA+GGG | 0.631429 | 4.3:+19318310 | MS.gene28709:CDS |
| GCTTCCTATAACAATCCTCA+GGG | 0.632807 | 4.3:-19322180 | None:intergenic |
| AGGACGAAGAGCGATCATTG+TGG | 0.633070 | 4.3:+19320499 | MS.gene28709:CDS |
| CTTTGGACATCCATTTACAG+AGG | 0.634735 | 4.3:-19322083 | None:intergenic |
| GATACTGAATAACTAATACA+AGG | 0.635441 | 4.3:-19322517 | None:intergenic |
| CAGCCCTTACTATATATGGA+AGG | 0.636193 | 4.3:-19320618 | None:intergenic |
| ATGCAAATCCAGATGCTGGT+GGG | 0.642189 | 4.3:+19324451 | MS.gene28709:CDS |
| AACATACAAAGAATATCCCT+AGG | 0.642294 | 4.3:-19321926 | None:intergenic |
| AGATCAAGCTTGTCTCTTTG+GGG | 0.645589 | 4.3:+19325426 | MS.gene28709:CDS |
| CAAAGTTGCAGAACCTCCAG+AGG | 0.647199 | 4.3:+19322913 | MS.gene28709:CDS |
| AACGGCTCTATGAGACTGCA+GGG | 0.648196 | 4.3:+19322284 | MS.gene28709:CDS |
| AGTGTGCAACGGTAAAGAGA+TGG | 0.648687 | 4.3:-19318354 | None:intergenic |
| GTGTAAATGTATTAATCCTG+AGG | 0.650161 | 4.3:+19320573 | MS.gene28709:CDS |
| CAGAGAACAGTTCAACCAGT+GGG | 0.653322 | 4.3:+19325624 | MS.gene28709:CDS |
| ATATCTGATCATCCGCTCAG+TGG | 0.657249 | 4.3:+19320457 | MS.gene28709:CDS |
| TGACTTATAATGGAAAAGAG+AGG | 0.658235 | 4.3:-19321974 | None:intergenic |
| GGCAACAAAAGAACGTCCTG+TGG | 0.659882 | 4.3:+19318194 | MS.gene28709:CDS |
| TACCACAAGAGTTAACTGGA+GGG | 0.660610 | 4.3:+19321895 | MS.gene28709:CDS |
| TAAATGTATTAATCCTGAGG+TGG | 0.668210 | 4.3:+19320576 | MS.gene28709:CDS |
| TTACCACAAGAGTTAACTGG+AGG | 0.668917 | 4.3:+19321894 | MS.gene28709:CDS |
| GATGTGATTGAATGTGCCAA+CGG | 0.669639 | 4.3:+19322058 | MS.gene28709:CDS |
| TGCACGGCACAATTATAATG+TGG | 0.686062 | 4.3:+19325660 | MS.gene28709:CDS |
| GGTTAAGCATTCCTCAGACG+AGG | 0.687251 | 4.3:+19318331 | MS.gene28709:CDS |
| TAGCATGCATCGGATATACA+CGG | 0.687540 | 4.3:+19321158 | MS.gene28709:CDS |
| AACTCACTAGAAGATAAGGA+CGG | 0.690279 | 4.3:-19322739 | None:intergenic |
| CCATGATAGAAGTTTCAATG+AGG | 0.694184 | 4.3:-19322224 | None:intergenic |
| AATTTACAAATTATCCAGAG+AGG | 0.695325 | 4.3:+19321841 | MS.gene28709:CDS |
| CCAGAGAACAGTTCAACCAG+TGG | 0.708997 | 4.3:+19325623 | MS.gene28709:CDS |
| GCCCGAATGTGACCACTGAG+CGG | 0.712193 | 4.3:-19320469 | None:intergenic |
| CTTCCTATAACAATCCTCAG+GGG | 0.761413 | 4.3:-19322179 | None:intergenic |
| TGTGATTGAATGTGCCAACG+GGG | 0.767832 | 4.3:+19322060 | MS.gene28709:CDS |
| CTTCTAGGGAAGACTCCCGG+GGG | 0.792503 | 4.3:+19321818 | MS.gene28709:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19318192 | 19325843 | 19318192 | ID=MS.gene28709 |
| chr4.3 | mRNA | 19318192 | 19325843 | 19318192 | ID=MS.gene28709.t1;Parent=MS.gene28709 |
| chr4.3 | exon | 19318192 | 19318464 | 19318192 | ID=MS.gene28709.t1.exon1;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19318192 | 19318464 | 19318192 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19319450 | 19319539 | 19319450 | ID=MS.gene28709.t1.exon2;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19319450 | 19319539 | 19319450 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19320451 | 19320905 | 19320451 | ID=MS.gene28709.t1.exon3;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19320451 | 19320905 | 19320451 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19320985 | 19321230 | 19320985 | ID=MS.gene28709.t1.exon4;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19320985 | 19321230 | 19320985 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19321814 | 19322754 | 19321814 | ID=MS.gene28709.t1.exon5;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19321814 | 19322754 | 19321814 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19322879 | 19323030 | 19322879 | ID=MS.gene28709.t1.exon6;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19322879 | 19323030 | 19322879 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19323111 | 19323227 | 19323111 | ID=MS.gene28709.t1.exon7;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19323111 | 19323227 | 19323111 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19324432 | 19324569 | 19324432 | ID=MS.gene28709.t1.exon8;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19324432 | 19324569 | 19324432 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| chr4.3 | exon | 19325406 | 19325843 | 19325406 | ID=MS.gene28709.t1.exon9;Parent=MS.gene28709.t1 |
| chr4.3 | CDS | 19325406 | 19325843 | 19325406 | ID=cds.MS.gene28709.t1;Parent=MS.gene28709.t1 |
| Gene Sequence |
| Protein sequence |
