AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29091


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29091.t1 MTR_4g076600 95.550 382 4 1 1 382 1 369 0.0 736
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29091.t1 AT5G08280 77.401 354 56 3 37 382 45 382 0.0 555

Find 92 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATGAAGCACTCATAAA+TGG 0.266891 4.2:-32953630 MS.gene29091:CDS
GCACTGCACAAACGGAGTTT+TGG 0.269308 4.2:+32952150 None:intergenic
CTACCAGCTGGAAGTGTTAT+TGG 0.287418 4.2:-32953471 MS.gene29091:CDS
AATTCTAATAATCGCAGTTT+TGG 0.297866 4.2:+32954560 None:intergenic
GGTTGTGAAAGCTACCTTAT+TGG 0.313941 4.2:-32952878 MS.gene29091:CDS
CTGATACGACATTTGGAAAA+AGG 0.322162 4.2:+32954618 None:intergenic
TCTTGCCGAACGCCTATTGC+GGG 0.331921 4.2:-32952312 MS.gene29091:CDS
GGCTATTCCAATTGCACCTT+GGG 0.335647 4.2:+32952774 None:intergenic
GATGGAAATTGCTTGTTTAG+AGG 0.343657 4.2:-32952270 MS.gene29091:CDS
GAAGGATTGGAAGGTGTAGA+AGG 0.351735 4.2:+32954690 None:intergenic
CAGTCCAGCTAGAGCCAATA+AGG 0.371368 4.2:+32952864 None:intergenic
TAGGAGTAATGATGATAAAA+TGG 0.379356 4.2:-32952749 MS.gene29091:intron
AAAACTGCGATTATTAGAAT+TGG 0.380075 4.2:-32954558 MS.gene29091:CDS
CTTCTTTCTCGAGCTGGACC+TGG 0.382803 4.2:-32952056 MS.gene29091:CDS
GAGAAGGAAAGGGGAAGGAT+TGG 0.401621 4.2:+32954677 None:intergenic
ATAAGCATAAGGACCGATTC+TGG 0.403424 4.2:+32952118 None:intergenic
TTAGAGCAGTCCACTAGCTT+TGG 0.407368 4.2:-32953808 MS.gene29091:intron
AAGAGCCTTCCTTACGACTT+TGG 0.415933 4.2:-32952340 MS.gene29091:CDS
GCTGTTGCCCAAGGTGCAAT+TGG 0.417047 4.2:-32952781 MS.gene29091:CDS
TAGATGAAGCACTCATAAAT+GGG 0.423935 4.2:-32953629 MS.gene29091:CDS
TTTATCATCATTACTCCTAC+AGG 0.431013 4.2:+32952753 None:intergenic
TTCATACCACGGGTTCCATC+GGG 0.433712 4.2:+32952234 None:intergenic
GGAAGCTCTGATACGACATT+TGG 0.445537 4.2:+32954611 None:intergenic
CTGCTAGCATACCCCGCAAT+AGG 0.459589 4.2:+32952300 None:intergenic
AGAATGCAGAAGAGGAAGAA+AGG 0.466442 4.2:+32954718 None:intergenic
AATCTGAATAGCCCCTTCTT+CGG 0.467642 4.2:+32953734 None:intergenic
AGTTTCAAGCACTGCACAAA+CGG 0.472887 4.2:+32952142 None:intergenic
GAGGAGCTTCTTTCTCGAGC+TGG 0.476446 4.2:-32952062 MS.gene29091:CDS
CATACAGAGTTAGCCGAAGA+AGG 0.479546 4.2:-32953747 MS.gene29091:CDS
GCCTTCCTTACGACTTTGGA+TGG 0.480690 4.2:-32952336 MS.gene29091:CDS
ATCATATCATCATAAGCATA+AGG 0.485218 4.2:+32952107 None:intergenic
GTGCTTGAAACTTCCAGAAT+CGG 0.486575 4.2:-32952131 MS.gene29091:CDS
ATTGCACCTTGGGCAACAGC+TGG 0.489725 4.2:+32952784 None:intergenic
GTTCATACCACGGGTTCCAT+CGG 0.490215 4.2:+32952233 None:intergenic
GAATGCAGAAGAGGAAGAAA+GGG 0.492559 4.2:+32954719 None:intergenic
GATGGGTAAGGATGCGGGTG+AGG 0.498552 4.2:-32952081 MS.gene29091:CDS
GCTACCTTATTGGCTCTAGC+TGG 0.499498 4.2:-32952868 MS.gene29091:CDS
ATGAAGATGGGTAAGGATGC+GGG 0.500619 4.2:-32952086 MS.gene29091:CDS
CAAGAAGAACTGAGAAGGAA+AGG 0.502363 4.2:+32954666 None:intergenic
AAGAAGAACTGAGAAGGAAA+GGG 0.502979 4.2:+32954667 None:intergenic
AGGAAGAGAGAATGCAGAAG+AGG 0.515566 4.2:+32954710 None:intergenic
AGGAAAGGGGAAGGATTGGA+AGG 0.521629 4.2:+32954681 None:intergenic
TCCTCTCGTGGAAGGTTGCA+TGG 0.526187 4.2:+32953540 None:intergenic
AGGCTATTCCAATTGCACCT+TGG 0.526245 4.2:+32952773 None:intergenic
CGTAAGGAAGGCTCTTTCAC+AGG 0.530222 4.2:+32952347 None:intergenic
TTCTTGCCGAACGCCTATTG+CGG 0.530390 4.2:-32952313 MS.gene29091:CDS
GAACTGAGAAGGAAAGGGGA+AGG 0.541355 4.2:+32954672 None:intergenic
TCCGTGGAAATGTGCAAACA+AGG 0.548138 4.2:-32952921 MS.gene29091:CDS
TCACTAGCTGATCTACCAGC+TGG 0.549246 4.2:-32953483 MS.gene29091:CDS
TCGCAACCGCTTGCAGACAT+AGG 0.549665 4.2:-32953678 MS.gene29091:CDS
GCCTTGTTTGCACATTTCCA+CGG 0.551589 4.2:+32952920 None:intergenic
TTAGAATTGGTACTAGAGGA+AGG 0.555106 4.2:-32954545 MS.gene29091:intron
ATACAGAGTTAGCCGAAGAA+GGG 0.556716 4.2:-32953746 MS.gene29091:CDS
GATGAAGATGGGTAAGGATG+CGG 0.558385 4.2:-32952087 MS.gene29091:CDS
CAGTCCACTAGCTTTGGCTC+AGG 0.560597 4.2:-32953802 MS.gene29091:CDS
CAACCGCTTGCAGACATAGG+TGG 0.565596 4.2:-32953675 MS.gene29091:CDS
TATGATGATATGATGAAGAT+GGG 0.565615 4.2:-32952098 MS.gene29091:CDS
TTATGATGATATGATGAAGA+TGG 0.567786 4.2:-32952099 MS.gene29091:CDS
CATACCCCGCAATAGGCGTT+CGG 0.571732 4.2:+32952307 None:intergenic
CACGAGCTTACACTTAGAGA+TGG 0.571883 4.2:+32953405 None:intergenic
GCCATGCAACCTTCCACGAG+AGG 0.571886 4.2:-32953541 MS.gene29091:CDS
CTCTAACATCCTCTCGTGGA+AGG 0.574873 4.2:+32953532 None:intergenic
TGTGCCTGAGCCAAAGCTAG+TGG 0.577115 4.2:+32953798 None:intergenic
ACCATCCAAAGTCGTAAGGA+AGG 0.584751 4.2:+32952335 None:intergenic
ATTATTAGAATTGGTACTAG+AGG 0.585168 4.2:-32954549 MS.gene29091:CDS
AACCGCTTGCAGACATAGGT+GGG 0.586462 4.2:-32953674 MS.gene29091:CDS
AAGAACCATCCAAAGTCGTA+AGG 0.589630 4.2:+32952331 None:intergenic
GCTTGCAGACATAGGTGGGA+AGG 0.591309 4.2:-32953670 MS.gene29091:CDS
CGTCTGTTGCTCAACAGCAA+CGG 0.602185 4.2:+32954590 None:intergenic
AGGCTTAGAAAACTAAGTGA+GGG 0.602676 4.2:-32952901 MS.gene29091:CDS
ATGCTTCCAGCTGTTGCCCA+AGG 0.607443 4.2:-32952790 MS.gene29091:CDS
AGGGACAAGAAGAACTGAGA+AGG 0.608902 4.2:+32954661 None:intergenic
GGCTTAGAAAACTAAGTGAG+GGG 0.614093 4.2:-32952900 MS.gene29091:CDS
TGATATGATGAAGATGGGTA+AGG 0.614306 4.2:-32952093 MS.gene29091:CDS
TTCCCACCTATGTCTGCAAG+CGG 0.617157 4.2:+32953672 None:intergenic
CACTTAGAGATGGATATCTG+TGG 0.621615 4.2:+32953415 None:intergenic
AGAAGAACTGAGAAGGAAAG+GGG 0.621960 4.2:+32954668 None:intergenic
TACAGAGTTAGCCGAAGAAG+GGG 0.622163 4.2:-32953745 MS.gene29091:CDS
CTTGCAGACATAGGTGGGAA+GGG 0.623209 4.2:-32953669 MS.gene29091:CDS
CATACCACGGGTTCCATCGG+GGG 0.623605 4.2:+32952236 None:intergenic
CTTGCCGAACGCCTATTGCG+GGG 0.633673 4.2:-32952311 MS.gene29091:CDS
GTACCAATAACACTTCCAGC+TGG 0.636804 4.2:+32953468 None:intergenic
AAGGCTTAGAAAACTAAGTG+AGG 0.637139 4.2:-32952902 MS.gene29091:CDS
GCATCTCTAACATCCTCTCG+TGG 0.642283 4.2:+32953528 None:intergenic
CAGGTGCAAGATAATTTCCG+TGG 0.647977 4.2:-32952937 MS.gene29091:CDS
GTGCAATTGGAATAGCCTGT+AGG 0.651535 4.2:-32952768 MS.gene29091:CDS
TATGCTAGCAGAGACAAGGA+TGG 0.659151 4.2:-32952288 MS.gene29091:CDS
AGATGAAGCACTCATAAATG+GGG 0.661644 4.2:-32953628 MS.gene29091:CDS
GGGGTATGCTAGCAGAGACA+AGG 0.662362 4.2:-32952292 MS.gene29091:CDS
TTAGAGATGGATATCTGTGG+AGG 0.669578 4.2:+32953418 None:intergenic
TCATACCACGGGTTCCATCG+GGG 0.679110 4.2:+32952235 None:intergenic
GCTTAGAAAACTAAGTGAGG+GGG 0.696029 4.2:-32952899 MS.gene29091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATTCTCAGATATT+GGG + chr4.2:32954243-32954262 None:intergenic 15.0%
!! AATCATTTAACTAATAGTAT+AGG + chr4.2:32952897-32952916 None:intergenic 15.0%
!! ATTGTAATAATAAAAACAAC+CGG - chr4.2:32953055-32953074 MS.gene29091:intron 15.0%
!! TAAAACAAAATACTGATATA+TGG + chr4.2:32952654-32952673 None:intergenic 15.0%
!!! AAACCATAATCATTTTTTAT+TGG - chr4.2:32953437-32953456 MS.gene29091:CDS 15.0%
!!! AACCATAATCATTTTTTATT+GGG - chr4.2:32953438-32953457 MS.gene29091:CDS 15.0%
!!! TTAGAAGATAATTTTAGAAA+GGG - chr4.2:32952727-32952746 MS.gene29091:intron 15.0%
!!! TTTTTGGCATTTATTTTAAT+GGG - chr4.2:32952466-32952485 MS.gene29091:intron 15.0%
!!! TTTTTTGGCATTTATTTTAA+TGG - chr4.2:32952465-32952484 MS.gene29091:intron 15.0%
!! ACAAGAAAAATAAAGAAAGA+AGG + chr4.2:32953693-32953712 None:intergenic 20.0%
!! ATAACAAAAGAAACCAAATA+TGG + chr4.2:32952845-32952864 None:intergenic 20.0%
!! ATATAAATTCTCAGATATTG+GGG + chr4.2:32954242-32954261 None:intergenic 20.0%
!! CAATATAAATTCTCAGATAT+TGG + chr4.2:32954244-32954263 None:intergenic 20.0%
!! TAACAAAAGAAACCAAATAT+GGG + chr4.2:32952844-32952863 None:intergenic 20.0%
!!! ATATTTGGTTTCTTTTGTTA+TGG - chr4.2:32952844-32952863 MS.gene29091:CDS 20.0%
!!! ATCTGAAATATTTCAATTCA+AGG - chr4.2:32954279-32954298 MS.gene29091:intron 20.0%
!!! ATTGTTATTGTCAAAAGAAA+AGG - chr4.2:32952575-32952594 MS.gene29091:intron 20.0%
!!! CACTTTTTGTGTTTAAATTT+TGG - chr4.2:32954095-32954114 MS.gene29091:intron 20.0%
!!! CTCAAATTTGCATTTTTTTT+TGG - chr4.2:32952450-32952469 MS.gene29091:intron 20.0%
!!! CTTAGAAGATAATTTTAGAA+AGG - chr4.2:32952726-32952745 MS.gene29091:intron 20.0%
!!! TTGTTATTGTCAAAAGAAAA+GGG - chr4.2:32952576-32952595 MS.gene29091:intron 20.0%
! AAAAATAAAGAAAGAAGGCA+TGG + chr4.2:32953688-32953707 None:intergenic 25.0%
! AAAAATCAATAAGAATCCGT+CGG + chr4.2:32953790-32953809 None:intergenic 25.0%
! AAAACTGCGATTATTAGAAT+TGG - chr4.2:32952211-32952230 MS.gene29091:intron 25.0%
! AAGAAAATCAATCCCATATT+TGG - chr4.2:32952829-32952848 MS.gene29091:CDS 25.0%
! ACAGACAATAGCTATATAAA+AGG + chr4.2:32953656-32953675 None:intergenic 25.0%
! AGCATTTAATGCATTCATAA+TGG - chr4.2:32953480-32953499 MS.gene29091:CDS 25.0%
! AGCCCAATAAAAAATGATTA+TGG + chr4.2:32953443-32953462 None:intergenic 25.0%
! ATCATATCATCATAAGCATA+AGG + chr4.2:32954665-32954684 None:intergenic 25.0%
! ATTATGAATGCTTTCATTGT+TGG - chr4.2:32952914-32952933 MS.gene29091:CDS 25.0%
! ATTATTAGAATTGGTACTAG+AGG - chr4.2:32952220-32952239 MS.gene29091:intron 25.0%
! CAACCTATAATTATAATCTC+AGG - chr4.2:32953813-32953832 MS.gene29091:intron 25.0%
! GTTTGATGTAAAAACCAATA+TGG + chr4.2:32953421-32953440 None:intergenic 25.0%
! TAGGAGTAATGATGATAAAA+TGG - chr4.2:32954020-32954039 MS.gene29091:intron 25.0%
! TATGATGATATGATGAAGAT+GGG - chr4.2:32954671-32954690 MS.gene29091:CDS 25.0%
! TGTTATTGTCAAAAGAAAAG+GGG - chr4.2:32952577-32952596 MS.gene29091:intron 25.0%
! TTATGATGATATGATGAAGA+TGG - chr4.2:32954670-32954689 MS.gene29091:CDS 25.0%
!! AAAATAAAGAAAGAAGGCAT+GGG + chr4.2:32953687-32953706 None:intergenic 25.0%
!! AATTCTAATAATCGCAGTTT+TGG + chr4.2:32952212-32952231 None:intergenic 25.0%
!! CAATCAAAAGTTAGAAGTAT+AGG - chr4.2:32954159-32954178 MS.gene29091:intron 25.0%
!!! ATAATCATTTTTTATTGGGC+TGG - chr4.2:32953442-32953461 MS.gene29091:CDS 25.0%
!!! ATTTCTGTCATTTAGCTTTA+TGG - chr4.2:32953760-32953779 MS.gene29091:CDS 25.0%
!!! CAGTTTAGTTTTACCATATT+TGG - chr4.2:32954333-32954352 MS.gene29091:intron 25.0%
!!! TTGACTTTTTTTATGCTTCT+GGG - chr4.2:32952321-32952340 MS.gene29091:CDS 25.0%
!!! TTTGACTTTTTTTATGCTTC+TGG - chr4.2:32952320-32952339 MS.gene29091:CDS 25.0%
ACCATTAACAACATGGATAA+TGG - chr4.2:32953549-32953568 MS.gene29091:CDS 30.0%
ACCATTATCCATGTTGTTAA+TGG + chr4.2:32953553-32953572 None:intergenic 30.0%
ATATGGAAGACACTAAACAA+TGG + chr4.2:32953404-32953423 None:intergenic 30.0%
ATGCAAATTTGAGCTAAAGT+TGG + chr4.2:32952443-32952462 None:intergenic 30.0%
GCACCTGAGATTATAATTAT+AGG + chr4.2:32953819-32953838 None:intergenic 30.0%
TATTTCAATTCAAGGAGCAA+AGG - chr4.2:32954287-32954306 MS.gene29091:intron 30.0%
TCTGAGAATTTATATTGACG+AGG - chr4.2:32954247-32954266 MS.gene29091:intron 30.0%
TTAAATGCTTGCAATCATCT+TGG - chr4.2:32952767-32952786 MS.gene29091:CDS 30.0%
TTGACTATATTGTGAGCTAT+TGG - chr4.2:32954129-32954148 MS.gene29091:intron 30.0%
TTGTTTAGTGTCTTCCATAT+TGG - chr4.2:32953404-32953423 MS.gene29091:intron 30.0%
TTTATCATCATTACTCCTAC+AGG + chr4.2:32954019-32954038 None:intergenic 30.0%
! ACTGCTCTAAATGTAAACAT+AGG + chr4.2:32952951-32952970 None:intergenic 30.0%
! ATAGATGAAGCACTCATAAA+TGG - chr4.2:32953139-32953158 MS.gene29091:intron 30.0%
! ATTTCATTCTTTTCTGCTTC+TGG - chr4.2:32952391-32952410 MS.gene29091:CDS 30.0%
! CTTCTGGGTTCTTTTTATAT+TGG - chr4.2:32952336-32952355 MS.gene29091:CDS 30.0%
! TAGATGAAGCACTCATAAAT+GGG - chr4.2:32953140-32953159 MS.gene29091:intron 30.0%
! TTTCATTCTTTTCTGCTTCT+GGG - chr4.2:32952392-32952411 MS.gene29091:CDS 30.0%
! TTTTCAACAAGTCAGACAAT+AGG + chr4.2:32954075-32954094 None:intergenic 30.0%
!!! AATTCACTCTTTTTTGCTTC+TGG - chr4.2:32952248-32952267 MS.gene29091:CDS 30.0%
!!! ATTCACTCTTTTTTGCTTCT+GGG - chr4.2:32952249-32952268 MS.gene29091:CDS 30.0%
!!! TGGCATTTATTTTAATGGGT+TGG - chr4.2:32952470-32952489 MS.gene29091:intron 30.0%
AAGAAGAACTGAGAAGGAAA+GGG + chr4.2:32952105-32952124 None:intergenic 35.0%
AAGGCTAACTCTTAAAACAC+AGG + chr4.2:32953637-32953656 None:intergenic 35.0%
AAGGCTTAGAAAACTAAGTG+AGG - chr4.2:32953867-32953886 MS.gene29091:intron 35.0%
AATTCTCAGATATTGGGGAA+AGG + chr4.2:32954237-32954256 None:intergenic 35.0%
AGAAATCAGACGACCAAATA+TGG + chr4.2:32954349-32954368 None:intergenic 35.0%
AGGCTTAGAAAACTAAGTGA+GGG - chr4.2:32953868-32953887 MS.gene29091:intron 35.0%
ATACGACATTTGGAAAAAGG+TGG + chr4.2:32952151-32952170 None:intergenic 35.0%
ATGGTTGAGTGTAGAGTAAT+AGG - chr4.2:32953568-32953587 MS.gene29091:CDS 35.0%
ATTCTCAGATATTGGGGAAA+GGG + chr4.2:32954236-32954255 None:intergenic 35.0%
CTGATACGACATTTGGAAAA+AGG + chr4.2:32952154-32952173 None:intergenic 35.0%
GATGGAAATTGCTTGTTTAG+AGG - chr4.2:32954499-32954518 MS.gene29091:intron 35.0%
GTTTGATGTTTCGTCATTCA+AGG - chr4.2:32952622-32952641 MS.gene29091:intron 35.0%
TACGACATTTGGAAAAAGGT+GGG + chr4.2:32952150-32952169 None:intergenic 35.0%
TCTTGTCACCATTAACAACA+TGG - chr4.2:32953542-32953561 MS.gene29091:CDS 35.0%
TGATATGATGAAGATGGGTA+AGG - chr4.2:32954676-32954695 MS.gene29091:CDS 35.0%
TTAGAATTGGTACTAGAGGA+AGG - chr4.2:32952224-32952243 MS.gene29091:intron 35.0%
! AGATGAAGCACTCATAAATG+GGG - chr4.2:32953141-32953160 MS.gene29091:intron 35.0%
! AGTTGTTTCACATGTTGACT+TGG - chr4.2:32952525-32952544 MS.gene29091:intron 35.0%
! CATGGCAAAATTGTTTTCTC+GGG + chr4.2:32953214-32953233 None:intergenic 35.0%
! GATAGTGTGTTGTTGACATT+TGG - chr4.2:32952550-32952569 MS.gene29091:intron 35.0%
! GCATGGCAAAATTGTTTTCT+CGG + chr4.2:32953215-32953234 None:intergenic 35.0%
! TGATTTTCGTCTAAGTGATG+CGG + chr4.2:32953326-32953345 None:intergenic 35.0%
! TTGCGACAGTATTTTATCAC+CGG + chr4.2:32953077-32953096 None:intergenic 35.0%
!! TTAGCTTTATGGAAAACCGA+CGG - chr4.2:32953771-32953790 MS.gene29091:CDS 35.0%
AAGAACCATCCAAAGTCGTA+AGG + chr4.2:32954441-32954460 None:intergenic 40.0%
AATCTGAATAGCCCCTTCTT+CGG + chr4.2:32953038-32953057 None:intergenic 40.0%
AGAAGAACTGAGAAGGAAAG+GGG + chr4.2:32952104-32952123 None:intergenic 40.0%
AGAATCATACTCGAGGATAC+TGG - chr4.2:32953605-32953624 MS.gene29091:CDS 40.0%
AGAATGCAGAAGAGGAAGAA+AGG + chr4.2:32952054-32952073 None:intergenic 40.0%
ATACAGAGTTAGCCGAAGAA+GGG - chr4.2:32953023-32953042 MS.gene29091:intron 40.0%
CAAGAAGAACTGAGAAGGAA+AGG + chr4.2:32952106-32952125 None:intergenic 40.0%
CACTTAGAGATGGATATCTG+TGG + chr4.2:32953357-32953376 None:intergenic 40.0%
CTGCAAAGATGTTCATACCA+CGG + chr4.2:32954549-32954568 None:intergenic 40.0%
GAATCATACTCGAGGATACT+GGG - chr4.2:32953606-32953625 MS.gene29091:CDS 40.0%
GAATGCAGAAGAGGAAGAAA+GGG + chr4.2:32952053-32952072 None:intergenic 40.0%
GCTTAGAAAACTAAGTGAGG+GGG - chr4.2:32953870-32953889 MS.gene29091:intron 40.0%
GGCTTAGAAAACTAAGTGAG+GGG - chr4.2:32953869-32953888 MS.gene29091:intron 40.0%
GGTTGTGAAAGCTACCTTAT+TGG - chr4.2:32953891-32953910 MS.gene29091:intron 40.0%
GTGCTTGAAACTTCCAGAAT+CGG - chr4.2:32954638-32954657 MS.gene29091:CDS 40.0%
TATCCTCGAGTATGATTCTC+AGG + chr4.2:32953604-32953623 None:intergenic 40.0%
TGCAAAGATGTTCATACCAC+GGG + chr4.2:32954548-32954567 None:intergenic 40.0%
TTAGAGATGGATATCTGTGG+AGG + chr4.2:32953354-32953373 None:intergenic 40.0%
TTCTCAGATATTGGGGAAAG+GGG + chr4.2:32954235-32954254 None:intergenic 40.0%
! AGTTTCAAGCACTGCACAAA+CGG + chr4.2:32954630-32954649 None:intergenic 40.0%
! ATAAGCATAAGGACCGATTC+TGG + chr4.2:32954654-32954673 None:intergenic 40.0%
! GTTTTCTCGGGCAAATAAGT+AGG + chr4.2:32953202-32953221 None:intergenic 40.0%
!! ATGGGTTGGTGCTATATGTT+AGG - chr4.2:32952484-32952503 MS.gene29091:intron 40.0%
!! TGTTTCACATGTTGACTTGG+TGG - chr4.2:32952528-32952547 MS.gene29091:intron 40.0%
AAGAGCCTTCCTTACGACTT+TGG - chr4.2:32954429-32954448 MS.gene29091:intron 45.0%
ACCATCCAAAGTCGTAAGGA+AGG + chr4.2:32954437-32954456 None:intergenic 45.0%
AGGAAGAGAGAATGCAGAAG+AGG + chr4.2:32952062-32952081 None:intergenic 45.0%
AGGCTATTCCAATTGCACCT+TGG + chr4.2:32953999-32954018 None:intergenic 45.0%
AGGGACAAGAAGAACTGAGA+AGG + chr4.2:32952111-32952130 None:intergenic 45.0%
ATGAAGATGGGTAAGGATGC+GGG - chr4.2:32954683-32954702 MS.gene29091:CDS 45.0%
ATGCCTGAGAATCATACTCG+AGG - chr4.2:32953598-32953617 MS.gene29091:CDS 45.0%
CACGAGCTTACACTTAGAGA+TGG + chr4.2:32953367-32953386 None:intergenic 45.0%
CAGGTGCAAGATAATTTCCG+TGG - chr4.2:32953832-32953851 MS.gene29091:intron 45.0%
CATACAGAGTTAGCCGAAGA+AGG - chr4.2:32953022-32953041 MS.gene29091:intron 45.0%
GATGAAGATGGGTAAGGATG+CGG - chr4.2:32954682-32954701 MS.gene29091:CDS 45.0%
GGCTATTCCAATTGCACCTT+GGG + chr4.2:32953998-32954017 None:intergenic 45.0%
GTACCAATAACACTTCCAGC+TGG + chr4.2:32953304-32953323 None:intergenic 45.0%
GTGCAATTGGAATAGCCTGT+AGG - chr4.2:32954001-32954020 MS.gene29091:intron 45.0%
TACAGAGTTAGCCGAAGAAG+GGG - chr4.2:32953024-32953043 MS.gene29091:intron 45.0%
TATGCTAGCAGAGACAAGGA+TGG - chr4.2:32954481-32954500 MS.gene29091:intron 45.0%
TCCGTGGAAATGTGCAAACA+AGG - chr4.2:32953848-32953867 MS.gene29091:intron 45.0%
TCTCAGATATTGGGGAAAGG+GGG + chr4.2:32954234-32954253 None:intergenic 45.0%
TTTGGTCGTCTGATTTCTGC+AGG - chr4.2:32954351-32954370 MS.gene29091:intron 45.0%
! CACTGCACAAACGGAGTTTT+GGG + chr4.2:32954621-32954640 None:intergenic 45.0%
! GAAGGATTGGAAGGTGTAGA+AGG + chr4.2:32952082-32952101 None:intergenic 45.0%
! GGAAGCTCTGATACGACATT+TGG + chr4.2:32952161-32952180 None:intergenic 45.0%
! TTAGAGCAGTCCACTAGCTT+TGG - chr4.2:32952961-32952980 MS.gene29091:intron 45.0%
!! CTACCAGCTGGAAGTGTTAT+TGG - chr4.2:32953298-32953317 MS.gene29091:intron 45.0%
!! GCCTTGTTTGCACATTTCCA+CGG + chr4.2:32953852-32953871 None:intergenic 45.0%
!! GGGATTTTGAAAGACGCGAA+GGG + chr4.2:32952130-32952149 None:intergenic 45.0%
!! TGGGATTTTGAAAGACGCGA+AGG + chr4.2:32952131-32952150 None:intergenic 45.0%
AACCGCTTGCAGACATAGGT+GGG - chr4.2:32953095-32953114 MS.gene29091:intron 50.0%
AGGAAAGGGGAAGGATTGGA+AGG + chr4.2:32952091-32952110 None:intergenic 50.0%
CAGTCCAGCTAGAGCCAATA+AGG + chr4.2:32953908-32953927 None:intergenic 50.0%
CGTAAGGAAGGCTCTTTCAC+AGG + chr4.2:32954425-32954444 None:intergenic 50.0%
CGTCTGTTGCTCAACAGCAA+CGG + chr4.2:32952182-32952201 None:intergenic 50.0%
CTCTAACATCCTCTCGTGGA+AGG + chr4.2:32953240-32953259 None:intergenic 50.0%
CTTGCAGACATAGGTGGGAA+GGG - chr4.2:32953100-32953119 MS.gene29091:intron 50.0%
GAACTGAGAAGGAAAGGGGA+AGG + chr4.2:32952100-32952119 None:intergenic 50.0%
GAGAAGGAAAGGGGAAGGAT+TGG + chr4.2:32952095-32952114 None:intergenic 50.0%
GCATCTCTAACATCCTCTCG+TGG + chr4.2:32953244-32953263 None:intergenic 50.0%
GCCTTCCTTACGACTTTGGA+TGG - chr4.2:32954433-32954452 MS.gene29091:intron 50.0%
GTTCATACCACGGGTTCCAT+CGG + chr4.2:32954539-32954558 None:intergenic 50.0%
TCACTAGCTGATCTACCAGC+TGG - chr4.2:32953286-32953305 MS.gene29091:intron 50.0%
TTCATACCACGGGTTCCATC+GGG + chr4.2:32954538-32954557 None:intergenic 50.0%
TTCCCACCTATGTCTGCAAG+CGG + chr4.2:32953100-32953119 None:intergenic 50.0%
TTCTTGCCGAACGCCTATTG+CGG - chr4.2:32954456-32954475 MS.gene29091:intron 50.0%
! GCACTGCACAAACGGAGTTT+TGG + chr4.2:32954622-32954641 None:intergenic 50.0%
!! GCTACCTTATTGGCTCTAGC+TGG - chr4.2:32953901-32953920 MS.gene29091:intron 50.0%
ATGCTTCCAGCTGTTGCCCA+AGG - chr4.2:32953979-32953998 MS.gene29091:intron 55.0%
ATTGCACCTTGGGCAACAGC+TGG + chr4.2:32953988-32954007 None:intergenic 55.0%
CAACCGCTTGCAGACATAGG+TGG - chr4.2:32953094-32953113 MS.gene29091:intron 55.0%
CATACCCCGCAATAGGCGTT+CGG + chr4.2:32954465-32954484 None:intergenic 55.0%
CTGCTAGCATACCCCGCAAT+AGG + chr4.2:32954472-32954491 None:intergenic 55.0%
CTTCTTTCTCGAGCTGGACC+TGG - chr4.2:32954713-32954732 MS.gene29091:CDS 55.0%
GAGGAGCTTCTTTCTCGAGC+TGG - chr4.2:32954707-32954726 MS.gene29091:CDS 55.0%
GCTGTTGCCCAAGGTGCAAT+TGG - chr4.2:32953988-32954007 MS.gene29091:intron 55.0%
GCTTGCAGACATAGGTGGGA+AGG - chr4.2:32953099-32953118 MS.gene29091:intron 55.0%
GGGGTATGCTAGCAGAGACA+AGG - chr4.2:32954477-32954496 MS.gene29091:intron 55.0%
TCATACCACGGGTTCCATCG+GGG + chr4.2:32954537-32954556 None:intergenic 55.0%
TCCTCTCGTGGAAGGTTGCA+TGG + chr4.2:32953232-32953251 None:intergenic 55.0%
TCGCAACCGCTTGCAGACAT+AGG - chr4.2:32953091-32953110 MS.gene29091:intron 55.0%
TCTTGCCGAACGCCTATTGC+GGG - chr4.2:32954457-32954476 MS.gene29091:intron 55.0%
TGTGCCTGAGCCAAAGCTAG+TGG + chr4.2:32952974-32952993 None:intergenic 55.0%
!! CAGTCCACTAGCTTTGGCTC+AGG - chr4.2:32952967-32952986 MS.gene29091:intron 55.0%
!! GGATTAGTTGCTTCCCCCGA+TGG - chr4.2:32954520-32954539 MS.gene29091:intron 55.0%
CATACCACGGGTTCCATCGG+GGG + chr4.2:32954536-32954555 None:intergenic 60.0%
CTTGCCGAACGCCTATTGCG+GGG - chr4.2:32954458-32954477 MS.gene29091:intron 60.0%
GATGGGTAAGGATGCGGGTG+AGG - chr4.2:32954688-32954707 MS.gene29091:CDS 60.0%
GCCATGCAACCTTCCACGAG+AGG - chr4.2:32953228-32953247 MS.gene29091:intron 60.0%
GGGGAAAGGGGGTCATTGCA+TGG + chr4.2:32954223-32954242 None:intergenic 60.0%
GCTTCCCCCGATGGAACCCG+TGG - chr4.2:32954529-32954548 MS.gene29091:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 32952040 32954751 32952040 ID=MS.gene29091
chr4.2 mRNA 32952040 32954751 32952040 ID=MS.gene29091.t1;Parent=MS.gene29091
chr4.2 exon 32954546 32954751 32954546 ID=MS.gene29091.t1.exon1;Parent=MS.gene29091.t1
chr4.2 CDS 32954546 32954751 32954546 ID=cds.MS.gene29091.t1;Parent=MS.gene29091.t1
chr4.2 exon 32953416 32953821 32953416 ID=MS.gene29091.t1.exon2;Parent=MS.gene29091.t1
chr4.2 CDS 32953416 32953821 32953416 ID=cds.MS.gene29091.t1;Parent=MS.gene29091.t1
chr4.2 exon 32952750 32952956 32952750 ID=MS.gene29091.t1.exon3;Parent=MS.gene29091.t1
chr4.2 CDS 32952750 32952956 32952750 ID=cds.MS.gene29091.t1;Parent=MS.gene29091.t1
chr4.2 exon 32952241 32952418 32952241 ID=MS.gene29091.t1.exon4;Parent=MS.gene29091.t1
chr4.2 CDS 32952241 32952418 32952241 ID=cds.MS.gene29091.t1;Parent=MS.gene29091.t1
chr4.2 exon 32952040 32952191 32952040 ID=MS.gene29091.t1.exon5;Parent=MS.gene29091.t1
chr4.2 CDS 32952040 32952191 32952040 ID=cds.MS.gene29091.t1;Parent=MS.gene29091.t1
Gene Sequence

>MS.gene29091

ATGGAGATGACCCTTTCTTCCTCTTCTGCATTCTCTCTTCCTTCTACACCTTCCAATCCTTCCCCTTTCCTTCTCAGTTCTTCTTGTCCCTTCGCGTCTTTCAAAATCCCACCTTTTTCCAAATGTCGTATCAGAGCTTCCGTTGCTGTTGAGCAACAGACGCAACAAACCAAAACTGCGATTATTAGAATTGGTACTAGAGGAAGGTAATTCACTCTTTTTTGCTTCTGGGTTCTTTTTATTTTCGCTTAAAGTGTTCAACTTTAAGCTTAATTTTGCATTTGACTTTTTTTATGCTTCTGGGTTCTTTTTATATTGGCTTAAAGTGTTCAACTTTAAGCTTAATTTTGCATTTCATTCTTTTCTGCTTCTGGGTTCTTGTTATTTTAGCTTAAATTGACCAACTTTAGCTCAAATTTGCATTTTTTTTTGGCATTTATTTTAATGGGTTGGTGCTATATGTTAGGTTAAATTGTGTTTGATAAAGTTGTTTCACATGTTGACTTGGTGGATAGTGTGTTGTTGACATTTGGTGATTGTTATTGTCAAAAGAAAAGGGGTTTTGTTTTATGCAAGACACATGTTTGATGTTTCGTCATTCAAGGATTTTGCCATATATCAGTATTTTGTTTTACAGTTTTTTGTTTAATGCATGTATAGAATCTCAACAGATCTCAATACACTTGCTTAGAAGATAATTTTAGAAAGGGATAATTGAAATAATGAATTAAATGCTTGCAATCATCTTGGTAGATATAAGTGATTTTTTAGATACAATTGAATGTTTAAAAGAAAATCAATCCCATATTTGGTTTCTTTTGTTATGGATTTTTTTATTTTTTGTTTTTATTTAGCCTATACTATTAGTTAAATGATTATGAATGCTTTCATTGTTGGTTTAACAAATTCCTATGTTTACATTTAGAGCAGTCCACTAGCTTTGGCTCAGGCACACGAGACTAGAGACAAACTCATAGCATCGCATACAGAGTTAGCCGAAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACCGGTGATAAAATACTGTCGCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTTACTAAAGAAATAGATGAAGCACTCATAAATGGGGACATTGACATTGCAGTTCACTCAATGAAAGATGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCATGCAACCTTCCACGAGAGGATGTTAGAGATGCGTTTATATCATTGAGTGCAGCTTCACTAGCTGATCTACCAGCTGGAAGTGTTATTGGTACCGCATCACTTAGACGAAAATCACAAATCCTCCACAGATATCCATCTCTAAGTGTAAGCTCGTGTATTCTTGATTTTTCCATTGTTTAGTGTCTTCCATATTGGTTTTTACATCAAACCATAATCATTTTTTATTGGGCTGGTTCAGTTCTGATCAAAGCATTTAATGCATTCATAATGGATGTTTGAGTTAATAAACAAACATTAGTTTGTATAATTGTCTTGTCACCATTAACAACATGGATAATGGTTGAGTGTAGAGTAATAGGCAATGTCATGCCTGAGAATCATACTCGAGGATACTGGGCACTACCTGTGTTTTAAGAGTTAGCCTTTTATATAGCTATTGTCTGTAGCAATTTCCCATGCCTTCTTTCTTTATTTTTCTTGTACATTTTTTCTTTGTCTAATGTCATTTAATTGTTCTTTCATTGCTTTATTTCTGTCATTTAGCTTTATGGAAAACCGACGGATTCTTATTGATTTTTACTCAACCTATAATTATAATCTCAGGTGCAAGATAATTTCCGTGGAAATGTGCAAACAAGGCTTAGAAAACTAAGTGAGGGGGTTGTGAAAGCTACCTTATTGGCTCTAGCTGGACTGAAACGATTAAATATGACAGAAAATGTTACTTCAACACTGTCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGGAGTAATGATGATAAAATGGTGAGTGTTTAACTATATTTTATGAACTTGCCTATTGTCTGACTTGTTGAAAACACTTTTTGTGTTTAAATTTTGGTTGTATAATGTTTGACTATATTGTGAGCTATTGGCTGTTGTCAATCAAAAGTTAGAAGTATAGGTAGATATACAACTCATTTTGATATAAAATTTATTCGAACCATGCAATGACCCCCTTTCCCCAATATCTGAGAATTTATATTGACGAGGAGCTATTGCATCTGAAATATTTCAATTCAAGGAGCAAAGGATTTTGTACTTGATATACTTGCGCAGTTTAGTTTTACCATATTTGGTCGTCTGATTTCTGCAGGCAGAATATCTTACTTCACTGAATCATGAAGAAACAAGATTAGCAATTTCCTGTGAAAGAGCCTTCCTTACGACTTTGGATGGTTCTTGCCGAACGCCTATTGCGGGGTATGCTAGCAGAGACAAGGATGGAAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCCGATGGAACCCGTGGTATGAACATCTTTGCAGTAAATTTGTTTAATTTGTGACTCATTAAAAGTTATCAATCTTAAGCTTGCCCAAAACTCCGTTTGTGCAGTGCTTGAAACTTCCAGAATCGGTCCTTATGCTTATGATGATATGATGAAGATGGGTAAGGATGCGGGTGAGGAGCTTCTTTCTCGAGCTGGACCTGGTTTTTTCAATAGTTAA

Protein sequence

>MS.gene29091.t1

MEMTLSSSSAFSLPSTPSNPSPFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSVIGTASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEYLTSLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCLFRGLVASPDGTRVINLKLAQNSVCAVLETSRIGPYAYDDMMKMGKDAGEELLSRAGPGFFNS