Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29576.t1 | XP_003616539.1 | 97.2 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 3.00E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29576.t1 | G7KBU1 | 97.2 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 2.1e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene29576 | 0.823866 | 1.10E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene29576 | 0.833828 | 4.26E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene29576 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene049979 | MS.gene29576 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene29576 | 0.849415 | 3.28E-60 | -1.69E-46 |
| MS.gene05016 | MS.gene29576 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene050241 | MS.gene29576 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene29576 | 0.872438 | 3.18E-67 | -1.69E-46 |
| MS.gene050808 | MS.gene29576 | 0.852887 | 3.44E-61 | -1.69E-46 |
| MS.gene050901 | MS.gene29576 | 0.805455 | 1.32E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene29576 | 0.811778 | 5.91E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene29576 | 0.819212 | 1.31E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene29576 | 0.819337 | 1.22E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene29576 | 0.850037 | 2.20E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene29576 | 0.870105 | 1.88E-66 | -1.69E-46 |
| MS.gene051789 | MS.gene29576 | 0.806386 | 8.44E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene29576 | 0.871756 | 5.36E-67 | -1.69E-46 |
| MS.gene052665 | MS.gene29576 | 0.84414 | 9.09E-59 | -1.69E-46 |
| MS.gene052732 | MS.gene29576 | 0.817135 | 3.86E-52 | -1.69E-46 |
| MS.gene052879 | MS.gene29576 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene29576 | 0.823763 | 1.16E-53 | -1.69E-46 |
| MS.gene053174 | MS.gene29576 | 0.814541 | 1.46E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene29576 | 0.837456 | 5.14E-57 | -1.69E-46 |
| MS.gene053581 | MS.gene29576 | 0.858646 | 7.14E-63 | -1.69E-46 |
| MS.gene053597 | MS.gene29576 | 0.811527 | 6.70E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene29576 | 0.853795 | 1.89E-61 | -1.69E-46 |
| MS.gene053630 | MS.gene29576 | 0.810871 | 9.29E-51 | -1.69E-46 |
| MS.gene054550 | MS.gene29576 | 0.822535 | 2.25E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene29576 | 0.827827 | 1.26E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene29576 | 0.839605 | 1.43E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene29576 | 0.846428 | 2.19E-59 | -1.69E-46 |
| MS.gene055468 | MS.gene29576 | 0.846346 | 2.30E-59 | -1.69E-46 |
| MS.gene055512 | MS.gene29576 | 0.805808 | 1.12E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene29576 | 0.83388 | 4.14E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene29576 | -0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene29576 | 0.802251 | 6.13E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene29576 | 0.82962 | 4.65E-55 | -1.69E-46 |
| MS.gene055891 | MS.gene29576 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene056005 | MS.gene29576 | 0.817567 | 3.08E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene29576 | 0.800629 | 1.32E-48 | -1.69E-46 |
| MS.gene056584 | MS.gene29576 | 0.804814 | 1.80E-49 | -1.69E-46 |
| MS.gene056643 | MS.gene29576 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene056859 | MS.gene29576 | 0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene29576 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene29576 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene29576 | 0.815311 | 9.86E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene29576 | 0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene29576 | 0.843268 | 1.56E-58 | -1.69E-46 |
| MS.gene058906 | MS.gene29576 | 0.800898 | 1.16E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene29576 | 0.809908 | 1.50E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene29576 | 0.813679 | 2.27E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene29576 | 0.81695 | 4.25E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene29576 | 0.827998 | 1.15E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene29576 | 0.80735 | 5.28E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene29576 | 0.857114 | 2.04E-62 | -1.69E-46 |
| MS.gene061176 | MS.gene29576 | 0.82095 | 5.23E-53 | -1.69E-46 |
| MS.gene061177 | MS.gene29576 | 0.820371 | 7.11E-53 | -1.69E-46 |
| MS.gene061178 | MS.gene29576 | 0.820737 | 5.86E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29576.t1 | MTR_5g081560 | 97.183 | 213 | 4 | 2 | 1 | 213 | 1 | 211 | 5.42e-151 | 417 |
| MS.gene29576.t1 | MTR_3g069730 | 56.422 | 218 | 68 | 5 | 1 | 213 | 22 | 217 | 1.64e-69 | 211 |
| MS.gene29576.t1 | MTR_7g065920 | 53.431 | 204 | 85 | 6 | 13 | 213 | 38 | 234 | 2.73e-62 | 194 |
| MS.gene29576.t1 | MTR_3g069760 | 53.205 | 156 | 60 | 4 | 59 | 209 | 46 | 193 | 4.63e-41 | 138 |
| MS.gene29576.t1 | MTR_2g016520 | 38.686 | 137 | 65 | 3 | 87 | 211 | 153 | 282 | 3.55e-29 | 110 |
| MS.gene29576.t1 | MTR_4g086500 | 37.222 | 180 | 81 | 5 | 44 | 211 | 150 | 309 | 5.39e-28 | 107 |
| MS.gene29576.t1 | MTR_8g086550 | 36.667 | 180 | 82 | 5 | 44 | 211 | 150 | 309 | 1.00e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29576.t1 | AT5G05830 | 63.580 | 162 | 54 | 3 | 54 | 213 | 45 | 203 | 6.08e-68 | 207 |
| MS.gene29576.t1 | AT5G01070 | 53.077 | 130 | 58 | 1 | 87 | 213 | 75 | 204 | 4.42e-42 | 141 |
| MS.gene29576.t1 | AT2G37950 | 50.769 | 130 | 56 | 3 | 87 | 213 | 81 | 205 | 2.58e-39 | 134 |
| MS.gene29576.t1 | AT5G59000 | 38.967 | 213 | 68 | 7 | 52 | 211 | 26 | 229 | 3.31e-33 | 119 |
| MS.gene29576.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.78e-17 | 77.0 |
| MS.gene29576.t1 | AT2G34200 | 44.944 | 89 | 38 | 2 | 87 | 168 | 99 | 183 | 3.78e-17 | 77.0 |
Find 47 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTTGGTTCAAGATTAA+AGG | 0.278430 | 5.2:-69678117 | MS.gene29576:CDS |
| TAGGATTTGTCATCTTAGTA+TGG | 0.302408 | 5.2:-69678226 | MS.gene29576:CDS |
| TTCTGATGTTAAGGTGCATT+TGG | 0.316270 | 5.2:-69678268 | MS.gene29576:CDS |
| GAATTTCCTTCTAGCATGTA+TGG | 0.346946 | 5.2:-69676381 | MS.gene29576:CDS |
| GATATGACAAATCATGAATC+TGG | 0.374563 | 5.2:-69678204 | MS.gene29576:CDS |
| ATAAGGTGGAGAGGGATTGT+AGG | 0.391162 | 5.2:-69678245 | MS.gene29576:CDS |
| GATCAAAGGTGTGAGATTGT+AGG | 0.417863 | 5.2:-69678387 | MS.gene29576:CDS |
| TTTGATCTTCCTCATTTAAC+CGG | 0.432004 | 5.2:+69678403 | None:intergenic |
| CCCTCCATTGTACCACCAAC+AGG | 0.437762 | 5.2:-69676455 | MS.gene29576:CDS |
| ATAAGCATTGTGCTGAGGCT+TGG | 0.438291 | 5.2:-69678131 | MS.gene29576:CDS |
| CGAAAACCATACATGCTAGA+AGG | 0.444571 | 5.2:+69676375 | None:intergenic |
| CGAGTTTCTGATGGCGGTGA+AGG | 0.454167 | 5.2:+69676431 | None:intergenic |
| TGTAGAGGTTTCTGATGTTA+AGG | 0.455190 | 5.2:-69678277 | MS.gene29576:CDS |
| ATGTTCAGTGGAGTTGGATC+TGG | 0.459424 | 5.2:-69678307 | MS.gene29576:CDS |
| TTTCAAAATGCAGGTAAATG+AGG | 0.481861 | 5.2:-69678502 | None:intergenic |
| TCATGAATCTGGAATTCCTA+TGG | 0.482383 | 5.2:-69678193 | MS.gene29576:CDS |
| ATCAGAATGTTCAGTGGAGT+TGG | 0.482682 | 5.2:-69678313 | MS.gene29576:CDS |
| TCTGGAATTCCTATGGAGCT+TGG | 0.510778 | 5.2:-69678186 | MS.gene29576:CDS |
| TGTTAAGGTGCATTTGGATA+AGG | 0.511468 | 5.2:-69678262 | MS.gene29576:CDS |
| TTCCTCATTTAACCGGTCAC+CGG | 0.516076 | 5.2:+69678410 | None:intergenic |
| GCATTTGGATAAGGTGGAGA+GGG | 0.524811 | 5.2:-69678253 | MS.gene29576:CDS |
| TAAGGTGCATTTGGATAAGG+TGG | 0.527254 | 5.2:-69678259 | MS.gene29576:CDS |
| GGATCTGGATGGTGGTGTAG+AGG | 0.539432 | 5.2:-69678292 | MS.gene29576:CDS |
| CATTTGAACTTCCATAGCAC+CGG | 0.554330 | 5.2:+69676505 | None:intergenic |
| GATGTTCTAACTCCGGTGAC+CGG | 0.563674 | 5.2:-69678422 | MS.gene29576:CDS |
| CTCCGGTGACCGGTTAAATG+AGG | 0.569406 | 5.2:-69678412 | MS.gene29576:CDS |
| ACACAATGTAGCCGGTGCTA+TGG | 0.576578 | 5.2:-69676516 | MS.gene29576:CDS |
| TCCTGTTGGTGGTACAATGG+AGG | 0.577527 | 5.2:+69676454 | None:intergenic |
| TAGAACATCGTTCATTACTC+CGG | 0.582687 | 5.2:+69678436 | None:intergenic |
| GGCGGTGAAGGTCCTGTTGG+TGG | 0.584109 | 5.2:+69676443 | None:intergenic |
| TCAATTGCACACAATGTAGC+CGG | 0.585989 | 5.2:-69676524 | MS.gene29576:CDS |
| TGCTCATAAGCATTGTGCTG+AGG | 0.590807 | 5.2:-69678136 | MS.gene29576:CDS |
| CCTGTTGGTGGTACAATGGA+GGG | 0.590996 | 5.2:+69676455 | None:intergenic |
| TGCATTTGGATAAGGTGGAG+AGG | 0.590996 | 5.2:-69678254 | MS.gene29576:CDS |
| GGACAAGTTTCATGTTGTTG+TGG | 0.595194 | 5.2:-69678481 | MS.gene29576:CDS |
| AATGAACGATGTTCTAACTC+CGG | 0.609785 | 5.2:-69678429 | MS.gene29576:CDS |
| AAATTTCGAGTTTCTGATGG+CGG | 0.611712 | 5.2:+69676425 | None:intergenic |
| GATGGCGGTGAAGGTCCTGT+TGG | 0.619441 | 5.2:+69676440 | None:intergenic |
| TAGACAACAATGTATGTCAC+CGG | 0.620225 | 5.2:-69678455 | MS.gene29576:CDS |
| AACAGAACTTGTGAAATCTG+TGG | 0.623786 | 5.2:-69676548 | MS.gene29576:intron |
| AGGTCCTGTTGGTGGTACAA+TGG | 0.627223 | 5.2:+69676451 | None:intergenic |
| ATCTGAATCAGAATGTTCAG+TGG | 0.639058 | 5.2:-69678319 | MS.gene29576:CDS |
| GTGGAGTTGGATCTGGATGG+TGG | 0.642032 | 5.2:-69678300 | MS.gene29576:CDS |
| AAGTTACACAGGAATTCAAG+AGG | 0.657142 | 5.2:+69676316 | None:intergenic |
| TCAGTGGAGTTGGATCTGGA+TGG | 0.667485 | 5.2:-69678303 | MS.gene29576:CDS |
| AGTTACACAGGAATTCAAGA+GGG | 0.673281 | 5.2:+69676317 | None:intergenic |
| GGTTAAATGAGGAAGATCAA+AGG | 0.674298 | 5.2:-69678401 | MS.gene29576:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAACATATAATTGTA+TGG | - | chr5.2:69677774-69677793 | MS.gene29576:intron | 15.0% |
| !! | AATATATTGAAATCAAAACT+TGG | + | chr5.2:69677864-69677883 | None:intergenic | 15.0% |
| !!! | TGATCATAAATTTTTATGTT+TGG | + | chr5.2:69677081-69677100 | None:intergenic | 15.0% |
| !! | AATGGTTGAAAGAAAAATAT+TGG | - | chr5.2:69677549-69677568 | MS.gene29576:intron | 20.0% |
| !! | AATGTAAAGTGAAATTTGAA+AGG | - | chr5.2:69678092-69678111 | MS.gene29576:intron | 20.0% |
| !! | ACTATAAAATGTCTTAATAG+TGG | - | chr5.2:69677434-69677453 | MS.gene29576:intron | 20.0% |
| !! | CAAGTTAAATTGTTTAATGT+TGG | - | chr5.2:69678160-69678179 | MS.gene29576:CDS | 20.0% |
| !! | TAATCTATGTTTGAATAGTT+TGG | - | chr5.2:69676972-69676991 | MS.gene29576:intron | 20.0% |
| !!! | ATGTTTTTGCAAAAATGATT+TGG | - | chr5.2:69676663-69676682 | MS.gene29576:intron | 20.0% |
| !!! | TTTTAGGTAAAATTGATTTG+TGG | - | chr5.2:69677047-69677066 | MS.gene29576:intron | 20.0% |
| ! | AAAAGAAAAAAGAATCCCTT+TGG | - | chr5.2:69677750-69677769 | MS.gene29576:intron | 25.0% |
| ! | AAACAAAATCTTAAGACATC+CGG | + | chr5.2:69677185-69677204 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAGAATCCCTTT+GGG | - | chr5.2:69677751-69677770 | MS.gene29576:intron | 25.0% |
| ! | ACATATCAACTCAAATATAG+TGG | + | chr5.2:69676810-69676829 | None:intergenic | 25.0% |
| ! | ACTTTGTACAATTTCACTAT+AGG | - | chr5.2:69677955-69677974 | MS.gene29576:intron | 25.0% |
| ! | AGATAGAACTGATTATTGAT+AGG | - | chr5.2:69678132-69678151 | MS.gene29576:CDS | 25.0% |
| ! | ATATCTAATGATCAAACTAC+AGG | - | chr5.2:69678050-69678069 | MS.gene29576:intron | 25.0% |
| ! | ATCTACAATTTCATTCAATG+TGG | + | chr5.2:69676860-69676879 | None:intergenic | 25.0% |
| ! | CATTATAATAGAAAGGGTTA+AGG | - | chr5.2:69677522-69677541 | MS.gene29576:intron | 25.0% |
| ! | GAGCTACATTATAATAGAAA+GGG | - | chr5.2:69677516-69677535 | MS.gene29576:intron | 25.0% |
| ! | TATATGTTCAATTTCCCAAA+GGG | + | chr5.2:69677768-69677787 | None:intergenic | 25.0% |
| ! | TATGACAATAAACATAAGCT+AGG | - | chr5.2:69677015-69677034 | MS.gene29576:intron | 25.0% |
| ! | TGAGCTACATTATAATAGAA+AGG | - | chr5.2:69677515-69677534 | MS.gene29576:intron | 25.0% |
| ! | TTATAGTCACCATCTTTAAA+CGG | + | chr5.2:69677421-69677440 | None:intergenic | 25.0% |
| ! | TTATATGTTCAATTTCCCAA+AGG | + | chr5.2:69677769-69677788 | None:intergenic | 25.0% |
| !! | ACAATGTATAAGAGTATGTT+TGG | - | chr5.2:69676885-69676904 | MS.gene29576:intron | 25.0% |
| !! | CTCTTATGTTTTTCTTTTTG+TGG | - | chr5.2:69677285-69677304 | MS.gene29576:intron | 25.0% |
| !!! | AAATTTTTATGTTTGGCTTC+CGG | + | chr5.2:69677074-69677093 | None:intergenic | 25.0% |
| !!! | ATTGAGCTGATTTTTCAATT+TGG | + | chr5.2:69677710-69677729 | None:intergenic | 25.0% |
| !!! | CTGCTTTTATCTTCAATTAT+GGG | - | chr5.2:69677668-69677687 | MS.gene29576:intron | 25.0% |
| !!! | GGGATTCTTTTTTCTTTTAT+TGG | + | chr5.2:69677748-69677767 | None:intergenic | 25.0% |
| !!! | TAAGATTTTGTTTGAAGATG+CGG | - | chr5.2:69677192-69677211 | MS.gene29576:intron | 25.0% |
| AAAAAGCCATGATATGACAA+AGG | + | chr5.2:69678477-69678496 | None:intergenic | 30.0% | |
| AAGTCAAATAGCTTAGGATA+AGG | + | chr5.2:69677341-69677360 | None:intergenic | 30.0% | |
| AATAGCTTAGGATAAGGTAA+AGG | + | chr5.2:69677335-69677354 | None:intergenic | 30.0% | |
| ACAAACATGGAACTAAACAT+AGG | - | chr5.2:69677139-69677158 | MS.gene29576:intron | 30.0% | |
| AGAAAGGGTTAAGGTAATAA+TGG | - | chr5.2:69677531-69677550 | MS.gene29576:intron | 30.0% | |
| AGAGAATCCTAAAACACTAT+AGG | + | chr5.2:69677269-69677288 | None:intergenic | 30.0% | |
| ATGGAAAAGTCAAATAGCTT+AGG | + | chr5.2:69677347-69677366 | None:intergenic | 30.0% | |
| ATTCACAACTTCATTCCAAA+AGG | + | chr5.2:69676759-69676778 | None:intergenic | 30.0% | |
| CCATAATTGAAGATAAAAGC+AGG | + | chr5.2:69677670-69677689 | None:intergenic | 30.0% | |
| GATATGACAAATCATGAATC+TGG | - | chr5.2:69676622-69676641 | MS.gene29576:intron | 30.0% | |
| TAGGATTTGTCATCTTAGTA+TGG | - | chr5.2:69676600-69676619 | MS.gene29576:intron | 30.0% | |
| TTCACAACTTCATTCCAAAA+GGG | + | chr5.2:69676758-69676777 | None:intergenic | 30.0% | |
| TTTGATCTTCCTCATTTAAC+CGG | + | chr5.2:69676426-69676445 | None:intergenic | 30.0% | |
| ! | CATCAGAAACTCGAAATTTT+TGG | - | chr5.2:69678405-69678424 | MS.gene29576:CDS | 30.0% |
| ! | TTCTTTTTGTGGAAAAGTTG+TGG | - | chr5.2:69677296-69677315 | MS.gene29576:intron | 30.0% |
| !! | CAAAAATTTCGAGTTTCTGA+TGG | + | chr5.2:69678407-69678426 | None:intergenic | 30.0% |
| !! | CCTGCTTTTATCTTCAATTA+TGG | - | chr5.2:69677667-69677686 | MS.gene29576:intron | 30.0% |
| !!! | AGCTAGGTATATTAGCTTTT+AGG | - | chr5.2:69677031-69677050 | MS.gene29576:intron | 30.0% |
| AACAGAACTTGTGAAATCTG+TGG | - | chr5.2:69678278-69678297 | MS.gene29576:CDS | 35.0% | |
| AACTATGCTTGAATCCTAGT+TGG | + | chr5.2:69677604-69677623 | None:intergenic | 35.0% | |
| AATCCTAGTTGGGATGTAAA+TGG | + | chr5.2:69677593-69677612 | None:intergenic | 35.0% | |
| AATGAACGATGTTCTAACTC+CGG | - | chr5.2:69676397-69676416 | MS.gene29576:CDS | 35.0% | |
| ACTAACCCAAACATGATTCT+GGG | - | chr5.2:69677112-69677131 | MS.gene29576:intron | 35.0% | |
| ACTATGCTTGAATCCTAGTT+GGG | + | chr5.2:69677603-69677622 | None:intergenic | 35.0% | |
| ATCCTAGTTGGGATGTAAAT+GGG | + | chr5.2:69677592-69677611 | None:intergenic | 35.0% | |
| ATCTGAATCAGAATGTTCAG+TGG | - | chr5.2:69676507-69676526 | MS.gene29576:CDS | 35.0% | |
| GAAGTGAGAGATACATATAC+CGG | - | chr5.2:69677163-69677182 | MS.gene29576:intron | 35.0% | |
| GAATTTCCTTCTAGCATGTA+TGG | - | chr5.2:69678445-69678464 | MS.gene29576:CDS | 35.0% | |
| GGCAGCAAATGAATATACTA+AGG | + | chr5.2:69677381-69677400 | None:intergenic | 35.0% | |
| GGTTAAATGAGGAAGATCAA+AGG | - | chr5.2:69676425-69676444 | MS.gene29576:CDS | 35.0% | |
| TACTAACCCAAACATGATTC+TGG | - | chr5.2:69677111-69677130 | MS.gene29576:intron | 35.0% | |
| TACTAAGGACAAGCAACAAA+TGG | + | chr5.2:69677366-69677385 | None:intergenic | 35.0% | |
| TAGAACATCGTTCATTACTC+CGG | + | chr5.2:69676393-69676412 | None:intergenic | 35.0% | |
| TAGACAACAATGTATGTCAC+CGG | - | chr5.2:69676371-69676390 | MS.gene29576:CDS | 35.0% | |
| TCATTAGATATACGCGCATT+TGG | + | chr5.2:69678041-69678060 | None:intergenic | 35.0% | |
| TGTAGAGGTTTCTGATGTTA+AGG | - | chr5.2:69676549-69676568 | MS.gene29576:intron | 35.0% | |
| TGTTAAGGTGCATTTGGATA+AGG | - | chr5.2:69676564-69676583 | MS.gene29576:intron | 35.0% | |
| TTCTGATGTTAAGGTGCATT+TGG | - | chr5.2:69676558-69676577 | MS.gene29576:intron | 35.0% | |
| TTGTGGAAAAGTTGTGGATA+AGG | - | chr5.2:69677302-69677321 | MS.gene29576:intron | 35.0% | |
| TTTCACTATAGGAGCTACTA+AGG | - | chr5.2:69677966-69677985 | MS.gene29576:intron | 35.0% | |
| ! | AAATCGATTCACTTCTGTGA+CGG | + | chr5.2:69676916-69676935 | None:intergenic | 35.0% |
| ! | ACGGCATTATCCAAAGTATT+TGG | + | chr5.2:69677402-69677421 | None:intergenic | 35.0% |
| ! | AGTATTAGTACACACCCTTT+TGG | - | chr5.2:69676741-69676760 | MS.gene29576:intron | 35.0% |
| ! | CGATGATCCTATAGTGTTTT+AGG | - | chr5.2:69677259-69677278 | MS.gene29576:intron | 35.0% |
| ! | CTGCTAAGAAGTATGAAACT+TGG | - | chr5.2:69677798-69677817 | MS.gene29576:intron | 35.0% |
| ! | GCGAATAAAGTGTCAAACTT+AGG | + | chr5.2:69678188-69678207 | None:intergenic | 35.0% |
| ! | TCATGAATCTGGAATTCCTA+TGG | - | chr5.2:69676633-69676652 | MS.gene29576:intron | 35.0% |
| ! | TCATTTGCTGCCAAATACTT+TGG | - | chr5.2:69677389-69677408 | MS.gene29576:intron | 35.0% |
| ! | TGGATAATGCCGTTTAAAGA+TGG | - | chr5.2:69677409-69677428 | MS.gene29576:intron | 35.0% |
| ! | TTTTCGCCTTTGTCATATCA+TGG | - | chr5.2:69678468-69678487 | MS.gene29576:CDS | 35.0% |
| !! | AAATTTCGAGTTTCTGATGG+CGG | + | chr5.2:69678404-69678423 | None:intergenic | 35.0% |
| !! | GGTAAAATTGATTTGTGGAC+CGG | - | chr5.2:69677052-69677071 | MS.gene29576:intron | 35.0% |
| !!! | AGAAACTCGAAATTTTTGGC+AGG | - | chr5.2:69678409-69678428 | MS.gene29576:CDS | 35.0% |
| !!! | GAAACTCGAAATTTTTGGCA+GGG | - | chr5.2:69678410-69678429 | MS.gene29576:CDS | 35.0% |
| ATCAGAATGTTCAGTGGAGT+TGG | - | chr5.2:69676513-69676532 | MS.gene29576:CDS | 40.0% | |
| ATCCCATTTACATCCCAACT+AGG | - | chr5.2:69677587-69677606 | MS.gene29576:intron | 40.0% | |
| CAAAAACATCCAAGCTCCAT+AGG | + | chr5.2:69676652-69676671 | None:intergenic | 40.0% | |
| CAGTCTTTAGATCACTTGTG+TGG | - | chr5.2:69677219-69677238 | MS.gene29576:intron | 40.0% | |
| CATTTGAACTTCCATAGCAC+CGG | + | chr5.2:69678324-69678343 | None:intergenic | 40.0% | |
| CGAAAACCATACATGCTAGA+AGG | + | chr5.2:69678454-69678473 | None:intergenic | 40.0% | |
| GGACAAGTTTCATGTTGTTG+TGG | - | chr5.2:69676345-69676364 | MS.gene29576:CDS | 40.0% | |
| TAAGGTGCATTTGGATAAGG+TGG | - | chr5.2:69676567-69676586 | MS.gene29576:intron | 40.0% | |
| TCAATTGCACACAATGTAGC+CGG | - | chr5.2:69678302-69678321 | MS.gene29576:CDS | 40.0% | |
| TGTGTTTCGATTACTTCTCG+AGG | - | chr5.2:69677899-69677918 | MS.gene29576:intron | 40.0% | |
| TTCCTCCCAGAATCATGTTT+GGG | + | chr5.2:69677120-69677139 | None:intergenic | 40.0% | |
| ! | GAGGCTTGGTTCAAGATTAA+AGG | - | chr5.2:69676709-69676728 | MS.gene29576:intron | 40.0% |
| ! | GATCAAAGGTGTGAGATTGT+AGG | - | chr5.2:69676439-69676458 | MS.gene29576:CDS | 40.0% |
| ! | GGAGTGTCTGAAAAACAAAG+AGG | - | chr5.2:69676460-69676479 | MS.gene29576:CDS | 40.0% |
| !!! | GAAATTTTTGGCAGGGACAT+CGG | - | chr5.2:69678417-69678436 | MS.gene29576:CDS | 40.0% |
| AACCCAAACATGATTCTGGG+AGG | - | chr5.2:69677115-69677134 | MS.gene29576:intron | 45.0% | |
| ATAAGGTGGAGAGGGATTGT+AGG | - | chr5.2:69676581-69676600 | MS.gene29576:intron | 45.0% | |
| ATGTTCAGTGGAGTTGGATC+TGG | - | chr5.2:69676519-69676538 | MS.gene29576:CDS | 45.0% | |
| GCATTTGGATAAGGTGGAGA+GGG | - | chr5.2:69676573-69676592 | MS.gene29576:intron | 45.0% | |
| GTTCCTCCCAGAATCATGTT+TGG | + | chr5.2:69677121-69677140 | None:intergenic | 45.0% | |
| TGCATTTGGATAAGGTGGAG+AGG | - | chr5.2:69676572-69676591 | MS.gene29576:intron | 45.0% | |
| TTCCTCATTTAACCGGTCAC+CGG | + | chr5.2:69676419-69676438 | None:intergenic | 45.0% | |
| ! | ATAAGCATTGTGCTGAGGCT+TGG | - | chr5.2:69676695-69676714 | MS.gene29576:intron | 45.0% |
| ! | GATTCTGGGAGGAACAAACA+TGG | - | chr5.2:69677126-69677145 | MS.gene29576:intron | 45.0% |
| ! | TCTGGAATTCCTATGGAGCT+TGG | - | chr5.2:69676640-69676659 | MS.gene29576:intron | 45.0% |
| ! | TGCTCATAAGCATTGTGCTG+AGG | - | chr5.2:69676690-69676709 | MS.gene29576:intron | 45.0% |
| GATGTTCTAACTCCGGTGAC+CGG | - | chr5.2:69676404-69676423 | MS.gene29576:CDS | 50.0% | |
| TCAGTGGAGTTGGATCTGGA+TGG | - | chr5.2:69676523-69676542 | MS.gene29576:CDS | 50.0% | |
| ! | ACACAATGTAGCCGGTGCTA+TGG | - | chr5.2:69678310-69678329 | MS.gene29576:CDS | 50.0% |
| !! | AGGTCCTGTTGGTGGTACAA+TGG | + | chr5.2:69678378-69678397 | None:intergenic | 50.0% |
| !! | CCTGTTGGTGGTACAATGGA+GGG | + | chr5.2:69678374-69678393 | None:intergenic | 50.0% |
| !! | TCCTGTTGGTGGTACAATGG+AGG | + | chr5.2:69678375-69678394 | None:intergenic | 50.0% |
| CCCTCCATTGTACCACCAAC+AGG | - | chr5.2:69678371-69678390 | MS.gene29576:CDS | 55.0% | |
| CTCCGGTGACCGGTTAAATG+AGG | - | chr5.2:69676414-69676433 | MS.gene29576:CDS | 55.0% | |
| GTGGAGTTGGATCTGGATGG+TGG | - | chr5.2:69676526-69676545 | MS.gene29576:CDS | 55.0% | |
| ! | GGATCTGGATGGTGGTGTAG+AGG | - | chr5.2:69676534-69676553 | MS.gene29576:CDS | 55.0% |
| !! | CGAGTTTCTGATGGCGGTGA+AGG | + | chr5.2:69678398-69678417 | None:intergenic | 55.0% |
| ! | GATGGCGGTGAAGGTCCTGT+TGG | + | chr5.2:69678389-69678408 | None:intergenic | 60.0% |
| GGCGGTGAAGGTCCTGTTGG+TGG | + | chr5.2:69678386-69678405 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 69676331 | 69678517 | 69676331 | ID=MS.gene29576 |
| chr5.2 | mRNA | 69676331 | 69678517 | 69676331 | ID=MS.gene29576.t1;Parent=MS.gene29576 |
| chr5.2 | exon | 69678111 | 69678517 | 69678111 | ID=MS.gene29576.t1.exon1;Parent=MS.gene29576.t1 |
| chr5.2 | CDS | 69678111 | 69678517 | 69678111 | ID=cds.MS.gene29576.t1;Parent=MS.gene29576.t1 |
| chr5.2 | exon | 69676331 | 69676565 | 69676331 | ID=MS.gene29576.t1.exon2;Parent=MS.gene29576.t1 |
| chr5.2 | CDS | 69676331 | 69676565 | 69676331 | ID=cds.MS.gene29576.t1;Parent=MS.gene29576.t1 |
| Gene Sequence |
| Protein sequence |
