Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29842.t1 | XP_013460860.1 | 95.2 | 458 | 20 | 1 | 1 | 456 | 1 | 458 | 7.50E-241 | 842.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29842.t1 | Q9Y7K5 | 30.0 | 390 | 248 | 9 | 58 | 445 | 50 | 416 | 2.9e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29842.t1 | A0A072UYQ2 | 95.2 | 458 | 20 | 1 | 1 | 456 | 1 | 458 | 5.4e-241 | 842.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46611 | MS.gene29842 | PPI |
| MS.gene51650 | MS.gene29842 | PPI |
| MS.gene21888 | MS.gene29842 | PPI |
| MS.gene82740 | MS.gene29842 | PPI |
| MS.gene024753 | MS.gene29842 | PPI |
| MS.gene81658 | MS.gene29842 | PPI |
| MS.gene63539 | MS.gene29842 | PPI |
| MS.gene027071 | MS.gene29842 | PPI |
| MS.gene027074 | MS.gene29842 | PPI |
| MS.gene050457 | MS.gene29842 | PPI |
| MS.gene92674 | MS.gene29842 | PPI |
| MS.gene81663 | MS.gene29842 | PPI |
| MS.gene81660 | MS.gene29842 | PPI |
| MS.gene30176 | MS.gene29842 | PPI |
| MS.gene29768 | MS.gene29842 | PPI |
| MS.gene027073 | MS.gene29842 | PPI |
| MS.gene21734 | MS.gene29842 | PPI |
| MS.gene77885 | MS.gene29842 | PPI |
| MS.gene058128 | MS.gene29842 | PPI |
| MS.gene009485 | MS.gene29842 | PPI |
| MS.gene027075 | MS.gene29842 | PPI |
| MS.gene30177 | MS.gene29842 | PPI |
| MS.gene91851 | MS.gene29842 | PPI |
| MS.gene027072 | MS.gene29842 | PPI |
| MS.gene98540 | MS.gene29842 | PPI |
| MS.gene30172 | MS.gene29842 | PPI |
| MS.gene56285 | MS.gene29842 | PPI |
| MS.gene90626 | MS.gene29842 | PPI |
| MS.gene050456 | MS.gene29842 | PPI |
| MS.gene30174 | MS.gene29842 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29842.t1 | MTR_3g074070 | 96.507 | 458 | 14 | 1 | 1 | 456 | 1 | 458 | 0.0 | 921 |
| MS.gene29842.t1 | MTR_3g074070 | 96.288 | 458 | 14 | 2 | 1 | 456 | 1 | 457 | 0.0 | 914 |
| MS.gene29842.t1 | MTR_3g074070 | 90.741 | 486 | 14 | 3 | 1 | 456 | 1 | 485 | 0.0 | 897 |
| MS.gene29842.t1 | MTR_3g074070 | 97.792 | 317 | 6 | 1 | 140 | 456 | 28 | 343 | 0.0 | 644 |
| MS.gene29842.t1 | MTR_3g074070 | 98.328 | 299 | 4 | 1 | 158 | 456 | 1 | 298 | 0.0 | 610 |
| MS.gene29842.t1 | MTR_3g010010 | 55.353 | 439 | 190 | 5 | 19 | 456 | 14 | 447 | 6.14e-179 | 508 |
| MS.gene29842.t1 | MTR_2g028050 | 58.794 | 398 | 162 | 2 | 59 | 455 | 51 | 447 | 4.10e-178 | 506 |
| MS.gene29842.t1 | MTR_3g010010 | 55.353 | 439 | 190 | 5 | 19 | 456 | 56 | 489 | 5.07e-178 | 507 |
| MS.gene29842.t1 | MTR_7g022190 | 54.975 | 402 | 181 | 0 | 53 | 454 | 37 | 438 | 3.71e-169 | 483 |
| MS.gene29842.t1 | MTR_3g010110 | 48.016 | 252 | 108 | 4 | 63 | 313 | 54 | 283 | 2.24e-78 | 246 |
| MS.gene29842.t1 | MTR_3g106080 | 22.333 | 300 | 187 | 4 | 182 | 436 | 312 | 610 | 2.03e-14 | 75.9 |
| MS.gene29842.t1 | MTR_4g088640 | 25.258 | 194 | 135 | 3 | 254 | 442 | 70 | 258 | 1.02e-12 | 69.7 |
| MS.gene29842.t1 | MTR_4g119620 | 25.170 | 147 | 108 | 2 | 289 | 434 | 81 | 226 | 5.65e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29842.t1 | AT1G78070 | 69.518 | 456 | 130 | 3 | 1 | 455 | 1 | 448 | 0.0 | 647 |
| MS.gene29842.t1 | AT1G36070 | 72.087 | 412 | 110 | 4 | 48 | 455 | 7 | 417 | 0.0 | 618 |
| MS.gene29842.t1 | AT1G36070 | 72.087 | 412 | 109 | 5 | 48 | 455 | 7 | 416 | 0.0 | 613 |
| MS.gene29842.t1 | AT1G36070 | 72.000 | 400 | 107 | 4 | 60 | 455 | 1 | 399 | 0.0 | 601 |
| MS.gene29842.t1 | AT5G56190 | 56.140 | 456 | 191 | 3 | 1 | 456 | 1 | 447 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.140 | 456 | 191 | 3 | 1 | 456 | 1 | 447 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.140 | 456 | 191 | 3 | 1 | 456 | 1 | 447 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.140 | 456 | 191 | 3 | 1 | 456 | 1 | 447 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.473 | 448 | 186 | 3 | 11 | 456 | 1 | 441 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.473 | 448 | 186 | 3 | 11 | 456 | 1 | 441 | 0.0 | 534 |
| MS.gene29842.t1 | AT5G56190 | 56.347 | 449 | 187 | 3 | 10 | 456 | 21 | 462 | 0.0 | 533 |
| MS.gene29842.t1 | AT3G13340 | 60.680 | 412 | 158 | 4 | 47 | 456 | 38 | 447 | 0.0 | 520 |
| MS.gene29842.t1 | AT3G13340 | 60.680 | 412 | 158 | 4 | 47 | 456 | 38 | 447 | 0.0 | 520 |
| MS.gene29842.t1 | AT3G13340 | 60.680 | 412 | 158 | 4 | 47 | 456 | 38 | 447 | 0.0 | 520 |
| MS.gene29842.t1 | AT1G55680 | 58.495 | 412 | 167 | 4 | 47 | 456 | 36 | 445 | 4.46e-180 | 511 |
| MS.gene29842.t1 | AT1G78070 | 73.333 | 315 | 84 | 0 | 141 | 455 | 25 | 339 | 1.10e-176 | 498 |
| MS.gene29842.t1 | AT1G78070 | 73.248 | 314 | 84 | 0 | 142 | 455 | 25 | 338 | 5.03e-176 | 496 |
| MS.gene29842.t1 | AT1G36070 | 72.148 | 298 | 81 | 2 | 158 | 454 | 1 | 297 | 8.47e-161 | 456 |
| MS.gene29842.t1 | AT1G36070 | 72.148 | 298 | 81 | 2 | 158 | 454 | 1 | 297 | 8.47e-161 | 456 |
| MS.gene29842.t1 | AT5G25150 | 25.405 | 185 | 135 | 3 | 253 | 436 | 427 | 609 | 7.64e-12 | 68.2 |
| MS.gene29842.t1 | AT5G25150 | 25.405 | 185 | 135 | 3 | 253 | 436 | 427 | 609 | 9.23e-12 | 67.8 |
| MS.gene29842.t1 | AT5G08390 | 30.137 | 146 | 90 | 2 | 302 | 436 | 64 | 208 | 1.21e-11 | 67.4 |
| MS.gene29842.t1 | AT5G23430 | 29.577 | 142 | 97 | 2 | 297 | 436 | 68 | 208 | 2.85e-11 | 66.2 |
| MS.gene29842.t1 | AT5G23430 | 29.577 | 142 | 97 | 2 | 297 | 436 | 68 | 208 | 3.00e-11 | 66.2 |
| MS.gene29842.t1 | AT5G23430 | 29.577 | 142 | 97 | 2 | 297 | 436 | 68 | 208 | 3.00e-11 | 66.2 |
| MS.gene29842.t1 | AT3G49660 | 24.832 | 149 | 110 | 2 | 289 | 436 | 74 | 221 | 5.93e-11 | 63.9 |
Find 112 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAGAATTTGAATCATTC+TGG | 0.246242 | 3.4:+72694531 | MS.gene29842:intron |
| CGAGATCAACGTTGTTGAAT+TGG | 0.279843 | 3.4:-72690778 | None:intergenic |
| GGAGTCCATGGCGGTATTAA+AGG | 0.291818 | 3.4:+72695225 | MS.gene29842:CDS |
| GGAAAGTTGTTAGCTGTTCT+TGG | 0.317224 | 3.4:+72694943 | MS.gene29842:CDS |
| CGGTATTAGCATCAGCTATC+AGG | 0.320426 | 3.4:-72694981 | None:intergenic |
| CAGGTCACTGGAAACCTAAA+AGG | 0.322712 | 3.4:+72695097 | MS.gene29842:intron |
| ACAAACAGAGCCTCTGTGTC+TGG | 0.330238 | 3.4:-72695409 | None:intergenic |
| AGTCAAGAGATAGATATATT+TGG | 0.331017 | 3.4:+72695361 | MS.gene29842:CDS |
| TGGGTTGTTTCAAGTATGAT+TGG | 0.334914 | 3.4:+72694779 | MS.gene29842:CDS |
| GATATATTTGGTGAAATTGC+TGG | 0.349480 | 3.4:+72695373 | MS.gene29842:CDS |
| AAAACATTGTTATCAGTATC+TGG | 0.350725 | 3.4:+72695477 | MS.gene29842:CDS |
| GCACCCCAATGGACAAATAT+TGG | 0.353641 | 3.4:+72695150 | MS.gene29842:CDS |
| TTGTTCATCGTCTTCGAAAT+CGG | 0.355336 | 3.4:-72690840 | None:intergenic |
| ATGGTGGCAGGTGGCTTCCA+TGG | 0.362264 | 3.4:+72694400 | MS.gene29842:CDS |
| AATCAGCACCATGGCTGTTA+AGG | 0.369015 | 3.4:+72694369 | MS.gene29842:CDS |
| CGTACAAGGGTTGGAATAAC+CGG | 0.371193 | 3.4:-72694224 | None:intergenic |
| GGGACGAATGGGTGCAATAA+GGG | 0.380199 | 3.4:+72695246 | MS.gene29842:CDS |
| GTAGCCAATATTTGTCCATT+GGG | 0.381858 | 3.4:-72695154 | None:intergenic |
| GAAAGTTGTTAGCTGTTCTT+GGG | 0.383669 | 3.4:+72694944 | MS.gene29842:CDS |
| CTGATTTGCACTCGCGAGAC+AGG | 0.384707 | 3.4:-72694352 | None:intergenic |
| CAAATAATGATTCCCAAGTT+CGG | 0.389538 | 3.4:+72694728 | MS.gene29842:CDS |
| AGGGACGAATGGGTGCAATA+AGG | 0.392663 | 3.4:+72695245 | MS.gene29842:CDS |
| TTTAGATTAAACTACCTTCC+CGG | 0.402476 | 3.4:-72695001 | None:intergenic |
| GAAGACTGATACTTCGGCTT+TGG | 0.402695 | 3.4:+72691056 | MS.gene29842:CDS |
| AATATTGGCTACCGGGAATC+AGG | 0.406373 | 3.4:+72695165 | MS.gene29842:CDS |
| GCATGTTGTGTCCTGATTCC+CGG | 0.406593 | 3.4:-72695176 | None:intergenic |
| AAATAATGATTCCCAAGTTC+GGG | 0.412328 | 3.4:+72694729 | MS.gene29842:CDS |
| TGGTGGCAGGTGGCTTCCAT+GGG | 0.412500 | 3.4:+72694401 | MS.gene29842:CDS |
| GTGGGACATAAGAAATCTTT+CGG | 0.416587 | 3.4:+72695204 | MS.gene29842:CDS |
| TCTTTGCAGTGGGTCGTTGA+GGG | 0.424531 | 3.4:+72694696 | MS.gene29842:intron |
| GAGTCCATGGCGGTATTAAA+GGG | 0.444452 | 3.4:+72695226 | MS.gene29842:CDS |
| TTGGTCCTCATTACTACAAA+GGG | 0.446991 | 3.4:+72694175 | MS.gene29842:CDS |
| ATAGAATGCTTCTGCTAGTC+CGG | 0.447571 | 3.4:+72694918 | MS.gene29842:intron |
| AGTCAGAATCGGAGGTGTTA+CGG | 0.449444 | 3.4:-72690889 | None:intergenic |
| GACACAGAGGCTCTGTTTGT+TGG | 0.450985 | 3.4:+72695412 | MS.gene29842:CDS |
| ATTATTCTTTCTCGTCTGCT+TGG | 0.451360 | 3.4:+72695128 | MS.gene29842:CDS |
| ACTGTTTCAAACGAGTTTCA+CGG | 0.452041 | 3.4:-72691146 | None:intergenic |
| TTCTTTGCAGTGGGTCGTTG+AGG | 0.454214 | 3.4:+72694695 | MS.gene29842:intron |
| TAATGTGAAGACTGATACTT+CGG | 0.456018 | 3.4:+72691050 | MS.gene29842:CDS |
| CGGCTTTGGAAGCACGCAAC+GGG | 0.460225 | 3.4:+72691070 | MS.gene29842:CDS |
| AGTGCTTAATGTGGCAAAAC+CGG | 0.460527 | 3.4:+72694205 | MS.gene29842:CDS |
| GGTAGCCAATATTTGTCCAT+TGG | 0.464135 | 3.4:-72695155 | None:intergenic |
| GCCTTAAAATTCACATCAGA+TGG | 0.465387 | 3.4:+72695268 | MS.gene29842:CDS |
| TTATTAGGAATGCTTGGAAG+TGG | 0.473594 | 3.4:+72691309 | MS.gene29842:intron |
| CTGATAGCTGATGCTAATAC+CGG | 0.476936 | 3.4:+72694982 | MS.gene29842:CDS |
| TTTACCCCTTTGTAGTAATG+AGG | 0.482246 | 3.4:-72694180 | None:intergenic |
| AAGATATTCAAGGAATTCCA+TGG | 0.493782 | 3.4:+72691094 | MS.gene29842:CDS |
| GGCTGTTAAGGAAAACTTGA+TGG | 0.496023 | 3.4:+72694381 | MS.gene29842:CDS |
| TGTAGCTGAGGAATCTATTG+TGG | 0.498079 | 3.4:+72694102 | MS.gene29842:intron |
| AGGACACAACATGCAGGTTG+TGG | 0.498713 | 3.4:+72695185 | MS.gene29842:CDS |
| GGCGGTATTAAAGGGACGAA+TGG | 0.503870 | 3.4:+72695234 | MS.gene29842:CDS |
| CCATGGGGAGCTTCTTTGCA+AGG | 0.506745 | 3.4:+72694417 | MS.gene29842:CDS |
| TATGGTATCTCTCAGGTCAC+TGG | 0.507467 | 3.4:+72695085 | MS.gene29842:intron |
| GTAGCTGAGGAATCTATTGT+GGG | 0.509031 | 3.4:+72694103 | MS.gene29842:intron |
| TTCGAAATCGTCTTCGAAGT+CGG | 0.512225 | 3.4:-72690918 | None:intergenic |
| GTCGGAGTCGGAGTCAGAAT+CGG | 0.516418 | 3.4:-72690900 | None:intergenic |
| TCGTCTGCTTGGCACCCCAA+TGG | 0.519721 | 3.4:+72695139 | MS.gene29842:CDS |
| AAGAAATCTTTCGGAGTCCA+TGG | 0.529812 | 3.4:+72695213 | MS.gene29842:CDS |
| GGACACAACATGCAGGTTGT+GGG | 0.534397 | 3.4:+72695186 | MS.gene29842:CDS |
| AGAGGCTCTGTTTGTTGGCG+TGG | 0.535275 | 3.4:+72695417 | MS.gene29842:CDS |
| GCGGTATTAAAGGGACGAAT+GGG | 0.538171 | 3.4:+72695235 | MS.gene29842:CDS |
| AAAATATGGACAAAGTCTGC+TGG | 0.538625 | 3.4:-72695313 | None:intergenic |
| ATCGTCTTCGAAGTCGGAGT+CGG | 0.540579 | 3.4:-72690912 | None:intergenic |
| CTAACAAGCTACCGTAGGTT+CGG | 0.542132 | 3.4:-72695444 | None:intergenic |
| GATTGTTGATTTGATAAGCC+TGG | 0.543951 | 3.4:-72691368 | None:intergenic |
| GAATGCTTGGAAGTGGAGAA+AGG | 0.547263 | 3.4:+72691316 | MS.gene29842:CDS |
| AGGTCACTGGAAACCTAAAA+GGG | 0.548717 | 3.4:+72695098 | MS.gene29842:intron |
| AATGGACAAATATTGGCTAC+CGG | 0.554682 | 3.4:+72695157 | MS.gene29842:CDS |
| GCGGAAAACATCCACTGCGT+TGG | 0.554722 | 3.4:-72694598 | None:intergenic |
| ACAGCTAACAACTTTCCATC+CGG | 0.555176 | 3.4:-72694937 | None:intergenic |
| TGGAAACCTAAAAGGGCACT+TGG | 0.558556 | 3.4:+72695105 | MS.gene29842:CDS |
| AAAGTCTGCTGGCTCAGCCA+TGG | 0.560344 | 3.4:-72695302 | None:intergenic |
| GGCGTGGCTGACCGAACCTA+CGG | 0.565701 | 3.4:+72695433 | MS.gene29842:CDS |
| AAGTAGCTACGTACAAGGGT+TGG | 0.572809 | 3.4:-72694233 | None:intergenic |
| AAGGAAAACTTGATGGTGGC+AGG | 0.574431 | 3.4:+72694388 | MS.gene29842:CDS |
| AAAACTACTCTGTGATGCAT+TGG | 0.575459 | 3.4:+72694156 | MS.gene29842:CDS |
| CAAACAGAGCCTCTGTGTCT+GGG | 0.578526 | 3.4:-72695408 | None:intergenic |
| AATGCTTCTGCTAGTCCGGA+TGG | 0.579771 | 3.4:+72694922 | MS.gene29842:CDS |
| CGCAACGGGAAAGATATTCA+AGG | 0.580596 | 3.4:+72691084 | MS.gene29842:CDS |
| GTTCTTGGGGACAGTACTGA+AGG | 0.589102 | 3.4:+72694958 | MS.gene29842:CDS |
| TTTGCACTCGCGAGACAGGG+TGG | 0.592559 | 3.4:-72694348 | None:intergenic |
| CTTCGAAGACGATTTCGAAA+CGG | 0.593406 | 3.4:+72690922 | MS.gene29842:CDS |
| TAGATGCTTACCTAGGATTG+CGG | 0.596184 | 3.4:-72694617 | None:intergenic |
| TGATTTGCACTCGCGAGACA+GGG | 0.598123 | 3.4:-72694351 | None:intergenic |
| AAAAGAAATTAACCTTGTCA+AGG | 0.602823 | 3.4:-72691206 | None:intergenic |
| GGAATCAGGACACAACATGC+AGG | 0.603356 | 3.4:+72695179 | MS.gene29842:CDS |
| TCGTCCCTTTAATACCGCCA+TGG | 0.605666 | 3.4:-72695230 | None:intergenic |
| GTACTTTAGCAGAAGCATTG+TGG | 0.611191 | 3.4:+72694319 | MS.gene29842:intron |
| ATTGGTCCTCATTACTACAA+AGG | 0.613083 | 3.4:+72694174 | MS.gene29842:CDS |
| TCGGAGGTGTTACGGTGAGG+AGG | 0.616059 | 3.4:-72690881 | None:intergenic |
| AGATATTCAAGGAATTCCAT+GGG | 0.616901 | 3.4:+72691095 | MS.gene29842:CDS |
| GGTGGCAGGTGGCTTCCATG+GGG | 0.618672 | 3.4:+72694402 | MS.gene29842:CDS |
| TCGGCTTTGGAAGCACGCAA+CGG | 0.620354 | 3.4:+72691069 | MS.gene29842:CDS |
| TTGCACTCGCGAGACAGGGT+GGG | 0.623685 | 3.4:-72694347 | None:intergenic |
| ATGGACAAATATTGGCTACC+GGG | 0.626683 | 3.4:+72695158 | MS.gene29842:CDS |
| AGCTGATGCTAATACCGGGA+AGG | 0.627809 | 3.4:+72694987 | MS.gene29842:CDS |
| TAGCCAATATTTGTCCATTG+GGG | 0.631857 | 3.4:-72695153 | None:intergenic |
| CCTTGCAAAGAAGCTCCCCA+TGG | 0.634860 | 3.4:-72694417 | None:intergenic |
| CCTTAAAATTCACATCAGAT+GGG | 0.638694 | 3.4:+72695269 | MS.gene29842:CDS |
| TGATAGCTGATGCTAATACC+GGG | 0.645103 | 3.4:+72694983 | MS.gene29842:CDS |
| CTCTCGTGAAGACCTTGACA+AGG | 0.646657 | 3.4:+72691194 | MS.gene29842:CDS |
| AAAGTTGTTAGCTGTTCTTG+GGG | 0.647961 | 3.4:+72694945 | MS.gene29842:CDS |
| GAAAACTTGATGGTGGCAGG+TGG | 0.651921 | 3.4:+72694391 | MS.gene29842:CDS |
| GGAGTCGGAGTCAGAATCGG+AGG | 0.657638 | 3.4:-72690897 | None:intergenic |
| GAACTCTAACAAGCTACCGT+AGG | 0.660581 | 3.4:-72695449 | None:intergenic |
| GGGTAAAGAAGTGCTTAATG+TGG | 0.669266 | 3.4:+72694196 | MS.gene29842:CDS |
| GAATCGGAGGTGTTACGGTG+AGG | 0.688099 | 3.4:-72690884 | None:intergenic |
| TAGTGCTATAACCAACGCAG+TGG | 0.693836 | 3.4:+72694587 | MS.gene29842:CDS |
| GCGAGTGCAAATCAGCACCA+TGG | 0.713411 | 3.4:+72694360 | MS.gene29842:CDS |
| TGGTCCTCATTACTACAAAG+GGG | 0.724620 | 3.4:+72694176 | MS.gene29842:CDS |
| TGTTAAGGAAAACTTGATGG+TGG | 0.731187 | 3.4:+72694384 | MS.gene29842:CDS |
| AAATCTTTCGGAGTCCATGG+CGG | 0.742556 | 3.4:+72695216 | MS.gene29842:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr3.4:72691285-72691304 | None:intergenic | 0.0% |
| !! | ATATGTTTATATCAATTAAA+AGG | - | chr3.4:72693179-72693198 | None:intergenic | 10.0% |
| !! | TTCTGATTATATATAATTTA+TGG | + | chr3.4:72695067-72695086 | MS.gene29842:intron | 10.0% |
| !!! | ATTTTTTCTATCTATAATTT+TGG | + | chr3.4:72691879-72691898 | MS.gene29842:intron | 10.0% |
| !! | TACATAAATATTTACATGAA+AGG | - | chr3.4:72692249-72692268 | None:intergenic | 15.0% |
| !! | TATAGATAGAAAAAATTGTT+TGG | - | chr3.4:72691875-72691894 | None:intergenic | 15.0% |
| !! | TGGATTTACTTATAAAATTA+AGG | - | chr3.4:72692387-72692406 | None:intergenic | 15.0% |
| !! | TTATATTGAATGTAAGAAAA+AGG | - | chr3.4:72692642-72692661 | None:intergenic | 15.0% |
| !!! | AAAAATCAAAAGTGTTAAAA+AGG | - | chr3.4:72694502-72694521 | None:intergenic | 15.0% |
| !!! | AAAATCAAAAGTGTTAAAAA+GGG | - | chr3.4:72694501-72694520 | None:intergenic | 15.0% |
| !!! | ATAAGTAAATCCATTTTTTT+GGG | + | chr3.4:72692394-72692413 | MS.gene29842:intron | 15.0% |
| !!! | TATAAGTAAATCCATTTTTT+TGG | + | chr3.4:72692393-72692412 | MS.gene29842:intron | 15.0% |
| !!! | TTAATCTAAAGATGTTTTTT+AGG | + | chr3.4:72695014-72695033 | MS.gene29842:intron | 15.0% |
| !! | AACAACTTATTAAAGTTTGA+GGG | + | chr3.4:72692028-72692047 | MS.gene29842:intron | 20.0% |
| !! | ACTCAAATTCTTTCTTAAAA+CGG | + | chr3.4:72692457-72692476 | MS.gene29842:intron | 20.0% |
| !! | AGAATCTAAATGAAACAATA+AGG | - | chr3.4:72695051-72695070 | None:intergenic | 20.0% |
| !! | AGTTAAATAAGATGAAATTG+AGG | - | chr3.4:72694291-72694310 | None:intergenic | 20.0% |
| !! | ATCTAAATGAAGCATATATT+TGG | + | chr3.4:72694635-72694654 | MS.gene29842:intron | 20.0% |
| !! | CTTTAAATCCTTATATAAAG+GGG | - | chr3.4:72691968-72691987 | None:intergenic | 20.0% |
| !! | TAACAACTTATTAAAGTTTG+AGG | + | chr3.4:72692027-72692046 | MS.gene29842:intron | 20.0% |
| !! | TAGAAATGAGAAAGAATATA+TGG | - | chr3.4:72692518-72692537 | None:intergenic | 20.0% |
| !! | TATAATCATCATAAAGAACT+TGG | + | chr3.4:72693701-72693720 | MS.gene29842:intron | 20.0% |
| !! | TCATGTAAATATTTATGTAC+TGG | + | chr3.4:72692250-72692269 | MS.gene29842:intron | 20.0% |
| !! | TGTTTATATCAATTAAAAGG+AGG | - | chr3.4:72693176-72693195 | None:intergenic | 20.0% |
| !!! | AAATCAAAAGTGTTAAAAAG+GGG | - | chr3.4:72694500-72694519 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGCTATATTCATT+TGG | + | chr3.4:72691418-72691437 | MS.gene29842:intron | 20.0% |
| !!! | GCTTTAAATCCTTATATAAA+GGG | - | chr3.4:72691969-72691988 | None:intergenic | 20.0% |
| !!! | GTTAATTTCTTTTTTTACTG+TGG | + | chr3.4:72691216-72691235 | MS.gene29842:intron | 20.0% |
| !!! | TGCTTTAAATCCTTATATAA+AGG | - | chr3.4:72691970-72691989 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATATGAATTCCT+TGG | + | chr3.4:72693673-72693692 | MS.gene29842:intron | 20.0% |
| ! | AAAACATTGTTATCAGTATC+TGG | + | chr3.4:72695477-72695496 | MS.gene29842:CDS | 25.0% |
| ! | AAAAGAAATTAACCTTGTCA+AGG | - | chr3.4:72691209-72691228 | None:intergenic | 25.0% |
| ! | ACAACTTATTAAAGTTTGAG+GGG | + | chr3.4:72692029-72692048 | MS.gene29842:intron | 25.0% |
| ! | ACGAATACATAAACCATAAA+AGG | - | chr3.4:72693251-72693270 | None:intergenic | 25.0% |
| ! | AGAATTTGAGTATACTAGAT+AGG | - | chr3.4:72692448-72692467 | None:intergenic | 25.0% |
| ! | AGTCAAGAGATAGATATATT+TGG | + | chr3.4:72695361-72695380 | MS.gene29842:CDS | 25.0% |
| ! | ATAAGTTATTCATCCAAAAC+AGG | + | chr3.4:72691848-72691867 | MS.gene29842:intron | 25.0% |
| ! | ATGATCATATATTTCTCCTT+GGG | + | chr3.4:72694045-72694064 | MS.gene29842:intron | 25.0% |
| ! | ATGATGATTATAGTATACCA+AGG | - | chr3.4:72693693-72693712 | None:intergenic | 25.0% |
| ! | ATTAACAGTTACAGTTATAG+TGG | - | chr3.4:72693046-72693065 | None:intergenic | 25.0% |
| ! | CAGAATGTGAATCAAAAATA+TGG | - | chr3.4:72695330-72695349 | None:intergenic | 25.0% |
| ! | CATATTTAGTAGCAGAAAAT+TGG | - | chr3.4:72693119-72693138 | None:intergenic | 25.0% |
| ! | CGAATACATAAACCATAAAA+GGG | - | chr3.4:72693250-72693269 | None:intergenic | 25.0% |
| ! | GGTTATGATATCTAATTTGA+AGG | - | chr3.4:72693783-72693802 | None:intergenic | 25.0% |
| ! | TAAGTTATTCATCCAAAACA+GGG | + | chr3.4:72691849-72691868 | MS.gene29842:intron | 25.0% |
| ! | TATAATTTATGGTATCTCTC+AGG | + | chr3.4:72695078-72695097 | MS.gene29842:intron | 25.0% |
| ! | TATGATCATATATTTCTCCT+TGG | + | chr3.4:72694044-72694063 | MS.gene29842:intron | 25.0% |
| ! | TCTTACTTTGAATTTCTGTT+TGG | + | chr3.4:72693596-72693615 | MS.gene29842:intron | 25.0% |
| ! | TGTATTGTTACCAATACTTT+AGG | + | chr3.4:72692777-72692796 | MS.gene29842:intron | 25.0% |
| ! | TTCAAAAGAATTATCTCCAA+TGG | + | chr3.4:72692489-72692508 | MS.gene29842:intron | 25.0% |
| !! | AAGAACTTGGTATAATTTGT+TGG | + | chr3.4:72693714-72693733 | MS.gene29842:intron | 25.0% |
| !! | ATACTGATAACAATGTTTTC+TGG | - | chr3.4:72695476-72695495 | None:intergenic | 25.0% |
| !! | ATGATTTTCAGTTTAATACC+AGG | + | chr3.4:72691350-72691369 | MS.gene29842:CDS | 25.0% |
| !! | CTTCACTTAAAATTCACTTT+TGG | + | chr3.4:72692176-72692195 | MS.gene29842:intron | 25.0% |
| !!! | AAGTTTTGTCCAATTTCTAT+TGG | - | chr3.4:72692106-72692125 | None:intergenic | 25.0% |
| !!! | AATCAAAAGTGTTAAAAAGG+GGG | - | chr3.4:72694499-72694518 | None:intergenic | 25.0% |
| !!! | AGAAAGTTATAGGCTTTTTT+TGG | + | chr3.4:72691713-72691732 | MS.gene29842:intron | 25.0% |
| !!! | AGTTAATGAGAGTTTTGTTT+TGG | + | chr3.4:72691012-72691031 | MS.gene29842:intron | 25.0% |
| !!! | CATATTTTTGATTCACATTC+TGG | + | chr3.4:72695328-72695347 | MS.gene29842:CDS | 25.0% |
| !!! | GCATATATTTGGAATTTTTG+TGG | + | chr3.4:72694646-72694665 | MS.gene29842:intron | 25.0% |
| !!! | TTGTTTTATAAGCTATCCTA+TGG | - | chr3.4:72691750-72691769 | None:intergenic | 25.0% |
| !!! | TTTTTGTTATTAGGAATGCT+TGG | + | chr3.4:72691303-72691322 | MS.gene29842:intron | 25.0% |
| AAAATAAGTAGCTACGTACA+AGG | - | chr3.4:72694241-72694260 | None:intergenic | 30.0% | |
| AAAGAATATATGGTGTCCAT+TGG | - | chr3.4:72692508-72692527 | None:intergenic | 30.0% | |
| AAATAAGTAGCTACGTACAA+GGG | - | chr3.4:72694240-72694259 | None:intergenic | 30.0% | |
| AAATAATGATTCCCAAGTTC+GGG | + | chr3.4:72694729-72694748 | MS.gene29842:CDS | 30.0% | |
| AAGATATTCAAGGAATTCCA+TGG | + | chr3.4:72691094-72691113 | MS.gene29842:CDS | 30.0% | |
| AAGCTTGTATGAGAACAATT+TGG | + | chr3.4:72691774-72691793 | MS.gene29842:intron | 30.0% | |
| ACCTAAGTTTATGGTATGAT+AGG | + | chr3.4:72693396-72693415 | MS.gene29842:intron | 30.0% | |
| ACGAATACATAAACCATAGA+AGG | - | chr3.4:72693153-72693172 | None:intergenic | 30.0% | |
| ACTTATGCAAAGCTCATATT+TGG | + | chr3.4:72692277-72692296 | MS.gene29842:intron | 30.0% | |
| AGAGTATGTCACTAAAAAGT+TGG | + | chr3.4:72692807-72692826 | MS.gene29842:intron | 30.0% | |
| AGATATTCAAGGAATTCCAT+GGG | + | chr3.4:72691095-72691114 | MS.gene29842:CDS | 30.0% | |
| CAAATAATGATTCCCAAGTT+CGG | + | chr3.4:72694728-72694747 | MS.gene29842:CDS | 30.0% | |
| CCTTAAAATTCACATCAGAT+GGG | + | chr3.4:72695269-72695288 | MS.gene29842:CDS | 30.0% | |
| CGAATACATAAACCATAGAA+GGG | - | chr3.4:72693152-72693171 | None:intergenic | 30.0% | |
| CTTAACCTGTTTATGCATTT+AGG | + | chr3.4:72693326-72693345 | MS.gene29842:intron | 30.0% | |
| GATATCACTCTAAACAAATC+AGG | - | chr3.4:72694012-72694031 | None:intergenic | 30.0% | |
| GGTCATCAACATAATTTCTA+TGG | - | chr3.4:72692228-72692247 | None:intergenic | 30.0% | |
| GTTAAAACCAACAATCTGTT+CGG | + | chr3.4:72692849-72692868 | MS.gene29842:intron | 30.0% | |
| TAACGAAAATAGCGAAGAAA+CGG | - | chr3.4:72690950-72690969 | None:intergenic | 30.0% | |
| TAACGAAAATTAATGCACTG+TGG | - | chr3.4:72692833-72692852 | None:intergenic | 30.0% | |
| TAATGTGAAGACTGATACTT+CGG | + | chr3.4:72691050-72691069 | MS.gene29842:CDS | 30.0% | |
| TACCAGAATTTGAATCATTC+TGG | + | chr3.4:72694531-72694550 | MS.gene29842:intron | 30.0% | |
| TATGTAACCCGTATATTCTT+TGG | + | chr3.4:72691921-72691940 | MS.gene29842:intron | 30.0% | |
| TCCTATCATACCATAAACTT+AGG | - | chr3.4:72693400-72693419 | None:intergenic | 30.0% | |
| TCTGCTAAATCCTAAAGTAT+TGG | - | chr3.4:72692790-72692809 | None:intergenic | 30.0% | |
| TGACTGTTTCAGAAAGTTAT+AGG | + | chr3.4:72691703-72691722 | MS.gene29842:intron | 30.0% | |
| TGTTGCTATATTCATTTGGT+GGG | + | chr3.4:72691422-72691441 | MS.gene29842:intron | 30.0% | |
| TTAAAACCAACAATCTGTTC+GGG | + | chr3.4:72692850-72692869 | MS.gene29842:intron | 30.0% | |
| TTGTTGCTATATTCATTTGG+TGG | + | chr3.4:72691421-72691440 | MS.gene29842:intron | 30.0% | |
| TTTAGATTAAACTACCTTCC+CGG | - | chr3.4:72695004-72695023 | None:intergenic | 30.0% | |
| ! | ACATTTTGCTCCCAAAAAAA+TGG | - | chr3.4:72692407-72692426 | None:intergenic | 30.0% |
| ! | CTATAATTAAGCTTTTCCCA+TGG | - | chr3.4:72691114-72691133 | None:intergenic | 30.0% |
| ! | GATATATTTGGTGAAATTGC+TGG | + | chr3.4:72695373-72695392 | MS.gene29842:CDS | 30.0% |
| !! | ATTTTAGTGATTTCCTGTCA+AGG | + | chr3.4:72692610-72692629 | MS.gene29842:intron | 30.0% |
| !! | CTGCTTTAAAGAGAAATAGA+AGG | - | chr3.4:72693352-72693371 | None:intergenic | 30.0% |
| !! | CTTCTATTTCTCTTTAAAGC+AGG | + | chr3.4:72693350-72693369 | MS.gene29842:intron | 30.0% |
| !! | TTCGCTATTTTCGTTAACTT+AGG | + | chr3.4:72690954-72690973 | MS.gene29842:intron | 30.0% |
| !!! | ATGAGAGTTTTGTTTTGGTT+TGG | + | chr3.4:72691017-72691036 | MS.gene29842:intron | 30.0% |
| !!! | TTTTGGTATTCTAGTTTTGC+AGG | + | chr3.4:72691896-72691915 | MS.gene29842:intron | 30.0% |
| AAAACTACTCTGTGATGCAT+TGG | + | chr3.4:72694156-72694175 | MS.gene29842:CDS | 35.0% | |
| AAAATATGGACAAAGTCTGC+TGG | - | chr3.4:72695316-72695335 | None:intergenic | 35.0% | |
| AAAGTTGTTAGCTGTTCTTG+GGG | + | chr3.4:72694945-72694964 | MS.gene29842:CDS | 35.0% | |
| AATATCTGACCACATTTGAG+AGG | + | chr3.4:72693421-72693440 | MS.gene29842:intron | 35.0% | |
| ACTGTTTCAAACGAGTTTCA+CGG | - | chr3.4:72691149-72691168 | None:intergenic | 35.0% | |
| AGAAGCTTTCGCATAATGTT+TGG | + | chr3.4:72693492-72693511 | MS.gene29842:intron | 35.0% | |
| AGCATCAATATTAACACCCA+AGG | - | chr3.4:72694064-72694083 | None:intergenic | 35.0% | |
| ATAAAAGGGAATGATCATGC+AGG | - | chr3.4:72693236-72693255 | None:intergenic | 35.0% | |
| ATATCTGACCACATTTGAGA+GGG | + | chr3.4:72693422-72693441 | MS.gene29842:intron | 35.0% | |
| ATGAAGTGCAAATGCCTAAA+TGG | - | chr3.4:72693865-72693884 | None:intergenic | 35.0% | |
| ATGACTTTAAACAACGCTGA+AGG | - | chr3.4:72693632-72693651 | None:intergenic | 35.0% | |
| ATGCATCCATATCCATCAAT+TGG | - | chr3.4:72692560-72692579 | None:intergenic | 35.0% | |
| ATTATTCTTTCTCGTCTGCT+TGG | + | chr3.4:72695128-72695147 | MS.gene29842:CDS | 35.0% | |
| ATTGGTCCTCATTACTACAA+AGG | + | chr3.4:72694174-72694193 | MS.gene29842:CDS | 35.0% | |
| ATTTATCTTTGTGCCACAAG+TGG | - | chr3.4:72692997-72693016 | None:intergenic | 35.0% | |
| CAATCAATCACACAACATCA+TGG | - | chr3.4:72693834-72693853 | None:intergenic | 35.0% | |
| CATGCTTGACATATGAGTTA+TGG | + | chr3.4:72691620-72691639 | MS.gene29842:intron | 35.0% | |
| CTCCAGAATGATTCAAATTC+TGG | - | chr3.4:72694536-72694555 | None:intergenic | 35.0% | |
| CTTCATTTAGATGCTTACCT+AGG | - | chr3.4:72694627-72694646 | None:intergenic | 35.0% | |
| GAAAGTTGTTAGCTGTTCTT+GGG | + | chr3.4:72694944-72694963 | MS.gene29842:CDS | 35.0% | |
| GAATCTTAATCGACAGGAAA+AGG | - | chr3.4:72692746-72692765 | None:intergenic | 35.0% | |
| GCCTTAAAATTCACATCAGA+TGG | + | chr3.4:72695268-72695287 | MS.gene29842:CDS | 35.0% | |
| GTAGCCAATATTTGTCCATT+GGG | - | chr3.4:72695157-72695176 | None:intergenic | 35.0% | |
| GTGGGACATAAGAAATCTTT+CGG | + | chr3.4:72695204-72695223 | MS.gene29842:CDS | 35.0% | |
| TAAAACCAACAATCTGTTCG+GGG | + | chr3.4:72692851-72692870 | MS.gene29842:intron | 35.0% | |
| TAGCCAATATTTGTCCATTG+GGG | - | chr3.4:72695156-72695175 | None:intergenic | 35.0% | |
| TCCTCTTGAAGAATTCAGTA+AGG | - | chr3.4:72692910-72692929 | None:intergenic | 35.0% | |
| TCCTTACTGAATTCTTCAAG+AGG | + | chr3.4:72692906-72692925 | MS.gene29842:intron | 35.0% | |
| TGTTAAGGAAAACTTGATGG+TGG | + | chr3.4:72694384-72694403 | MS.gene29842:CDS | 35.0% | |
| TTATTAGGAATGCTTGGAAG+TGG | + | chr3.4:72691309-72691328 | MS.gene29842:intron | 35.0% | |
| TTGGTCCTCATTACTACAAA+GGG | + | chr3.4:72694175-72694194 | MS.gene29842:CDS | 35.0% | |
| TTGTTCATCGTCTTCGAAAT+CGG | - | chr3.4:72690843-72690862 | None:intergenic | 35.0% | |
| TTTACCCCTTTGTAGTAATG+AGG | - | chr3.4:72694183-72694202 | None:intergenic | 35.0% | |
| TTTGTAACTGACCTTACTTC+AGG | + | chr3.4:72692353-72692372 | MS.gene29842:intron | 35.0% | |
| ! | AAAATTGTTTGGCCCTGTTT+TGG | - | chr3.4:72691864-72691883 | None:intergenic | 35.0% |
| ! | AATAATCCAAGTGCCCTTTT+AGG | - | chr3.4:72695114-72695133 | None:intergenic | 35.0% |
| ! | AATGGACAAATATTGGCTAC+CGG | + | chr3.4:72695157-72695176 | MS.gene29842:CDS | 35.0% |
| ! | ATCAACAATCGCACATTTTC+AGG | + | chr3.4:72691381-72691400 | MS.gene29842:CDS | 35.0% |
| ! | CCCATCTGATGTGAATTTTA+AGG | - | chr3.4:72695272-72695291 | None:intergenic | 35.0% |
| ! | CTATATTCATTTGGTGGGAT+TGG | + | chr3.4:72691427-72691446 | MS.gene29842:intron | 35.0% |
| ! | GAAGTTTTCATGCCAATTGA+TGG | + | chr3.4:72692545-72692564 | MS.gene29842:intron | 35.0% |
| ! | TGATCTCAAGTGTTGTATGT+GGG | - | chr3.4:72692695-72692714 | None:intergenic | 35.0% |
| ! | TGCATGATCATTCCCTTTTA+TGG | + | chr3.4:72693235-72693254 | MS.gene29842:intron | 35.0% |
| ! | TGGGTTGTTTCAAGTATGAT+TGG | + | chr3.4:72694779-72694798 | MS.gene29842:CDS | 35.0% |
| ! | TTCATGCCAATTGATGGATA+TGG | + | chr3.4:72692551-72692570 | MS.gene29842:intron | 35.0% |
| ! | TTTCCTGTCGATTAAGATTC+AGG | + | chr3.4:72692746-72692765 | MS.gene29842:intron | 35.0% |
| !! | AAAAAGGCTTTTTCCTTGAC+AGG | - | chr3.4:72692626-72692645 | None:intergenic | 35.0% |
| !! | CTATTTCTCTTTAAAGCAGG+TGG | + | chr3.4:72693353-72693372 | MS.gene29842:intron | 35.0% |
| !! | GATTGTTGATTTGATAAGCC+TGG | - | chr3.4:72691371-72691390 | None:intergenic | 35.0% |
| !! | GCTTTAGTTCTAACTCTGTT+TGG | + | chr3.4:72691594-72691613 | MS.gene29842:intron | 35.0% |
| !! | TCACAGAGTAGTTTTGCATA+AGG | - | chr3.4:72694151-72694170 | None:intergenic | 35.0% |
| AACTGTCTCTTTCTTTGCAG+TGG | + | chr3.4:72694685-72694704 | MS.gene29842:intron | 40.0% | |
| AAGAAATCTTTCGGAGTCCA+TGG | + | chr3.4:72695213-72695232 | MS.gene29842:CDS | 40.0% | |
| AAGCTATCCTATGGAGTGTA+TGG | - | chr3.4:72691741-72691760 | None:intergenic | 40.0% | |
| ACAGCTAACAACTTTCCATC+CGG | - | chr3.4:72694940-72694959 | None:intergenic | 40.0% | |
| ACCCACCGTTCTAACATTTA+CGG | + | chr3.4:72693960-72693979 | MS.gene29842:intron | 40.0% | |
| ACTGTCTCTTTCTTTGCAGT+GGG | + | chr3.4:72694686-72694705 | MS.gene29842:intron | 40.0% | |
| AGGACCCGTAAATGTTAGAA+CGG | - | chr3.4:72693968-72693987 | None:intergenic | 40.0% | |
| AGGCTCAAAATCCTGAAGTA+AGG | - | chr3.4:72692367-72692386 | None:intergenic | 40.0% | |
| AGGTCACTGGAAACCTAAAA+GGG | + | chr3.4:72695098-72695117 | MS.gene29842:intron | 40.0% | |
| AGTGCTTAATGTGGCAAAAC+CGG | + | chr3.4:72694205-72694224 | MS.gene29842:CDS | 40.0% | |
| ATAGAATGCTTCTGCTAGTC+CGG | + | chr3.4:72694918-72694937 | MS.gene29842:intron | 40.0% | |
| ATATGGATGCATCAAGGCTA+TGG | + | chr3.4:72692568-72692587 | MS.gene29842:intron | 40.0% | |
| CATCCTGCCAAAGAATATAC+GGG | - | chr3.4:72691931-72691950 | None:intergenic | 40.0% | |
| CCATCCTGCCAAAGAATATA+CGG | - | chr3.4:72691932-72691951 | None:intergenic | 40.0% | |
| CGAGATCAACGTTGTTGAAT+TGG | - | chr3.4:72690781-72690800 | None:intergenic | 40.0% | |
| CTGATAGCTGATGCTAATAC+CGG | + | chr3.4:72694982-72695001 | MS.gene29842:CDS | 40.0% | |
| CTTAATCGACAGGAAAAGGA+TGG | - | chr3.4:72692742-72692761 | None:intergenic | 40.0% | |
| CTTCAAGAGGAAAGCTTACA+TGG | + | chr3.4:72692919-72692938 | MS.gene29842:intron | 40.0% | |
| CTTCGAAGACGATTTCGAAA+CGG | + | chr3.4:72690922-72690941 | MS.gene29842:CDS | 40.0% | |
| GAAGGCCTAAATGCATAAAC+AGG | - | chr3.4:72693334-72693353 | None:intergenic | 40.0% | |
| GGAAAGTTGTTAGCTGTTCT+TGG | + | chr3.4:72694943-72694962 | MS.gene29842:CDS | 40.0% | |
| GGCTGTTAAGGAAAACTTGA+TGG | + | chr3.4:72694381-72694400 | MS.gene29842:CDS | 40.0% | |
| GGTAGCCAATATTTGTCCAT+TGG | - | chr3.4:72695158-72695177 | None:intergenic | 40.0% | |
| GGTGGGTATAATATGTCAGA+TGG | - | chr3.4:72693947-72693966 | None:intergenic | 40.0% | |
| GTAGCTGAGGAATCTATTGT+GGG | + | chr3.4:72694103-72694122 | MS.gene29842:intron | 40.0% | |
| GTGTTATACTTATGTGCGTC+TGG | + | chr3.4:72692143-72692162 | MS.gene29842:intron | 40.0% | |
| GTTATGGCTATGTACGTGTT+TGG | + | chr3.4:72691636-72691655 | MS.gene29842:intron | 40.0% | |
| TAACCCGTATATTCTTTGGC+AGG | + | chr3.4:72691925-72691944 | MS.gene29842:intron | 40.0% | |
| TAATCACCTGCGTATGAAGT+GGG | - | chr3.4:72693804-72693823 | None:intergenic | 40.0% | |
| TAGATGCTTACCTAGGATTG+CGG | - | chr3.4:72694620-72694639 | None:intergenic | 40.0% | |
| TGATAGCTGATGCTAATACC+GGG | + | chr3.4:72694983-72695002 | MS.gene29842:CDS | 40.0% | |
| TGCATCAAAAACCCGAACTT+GGG | - | chr3.4:72694743-72694762 | None:intergenic | 40.0% | |
| TGCATGATCATTCCCTTCTA+TGG | + | chr3.4:72693137-72693156 | MS.gene29842:intron | 40.0% | |
| TGGTCCTCATTACTACAAAG+GGG | + | chr3.4:72694176-72694195 | MS.gene29842:CDS | 40.0% | |
| TGTAGCTGAGGAATCTATTG+TGG | + | chr3.4:72694102-72694121 | MS.gene29842:intron | 40.0% | |
| TGTCCTGAATCTTAATCGAC+AGG | - | chr3.4:72692752-72692771 | None:intergenic | 40.0% | |
| TTCGAAATCGTCTTCGAAGT+CGG | - | chr3.4:72690921-72690940 | None:intergenic | 40.0% | |
| TTTATACTACCACATCCAGC+TGG | + | chr3.4:72691570-72691589 | MS.gene29842:intron | 40.0% | |
| ! | ATGGACAAATATTGGCTACC+GGG | + | chr3.4:72695158-72695177 | MS.gene29842:CDS | 40.0% |
| ! | CAAGTTTTCCTTAACAGCCA+TGG | - | chr3.4:72694380-72694399 | None:intergenic | 40.0% |
| ! | CACATCAGATGGGAAGTTTT+TGG | + | chr3.4:72695279-72695298 | MS.gene29842:CDS | 40.0% |
| ! | CTGATCTCAAGTGTTGTATG+TGG | - | chr3.4:72692696-72692715 | None:intergenic | 40.0% |
| ! | TGATGGATATGGATGCATCA+AGG | + | chr3.4:72692562-72692581 | MS.gene29842:intron | 40.0% |
| ! | TGATTGTGCATCGACCATTT+AGG | + | chr3.4:72693848-72693867 | MS.gene29842:intron | 40.0% |
| ! | TTTGGTTCCATACACTCCAT+AGG | + | chr3.4:72691731-72691750 | MS.gene29842:intron | 40.0% |
| !! | GGGTAAAGAAGTGCTTAATG+TGG | + | chr3.4:72694196-72694215 | MS.gene29842:CDS | 40.0% |
| !! | GTACTTTAGCAGAAGCATTG+TGG | + | chr3.4:72694319-72694338 | MS.gene29842:intron | 40.0% |
| AAATCTTTCGGAGTCCATGG+CGG | + | chr3.4:72695216-72695235 | MS.gene29842:CDS | 45.0% | |
| AAGTAGCTACGTACAAGGGT+TGG | - | chr3.4:72694236-72694255 | None:intergenic | 45.0% | |
| AATCAGCACCATGGCTGTTA+AGG | + | chr3.4:72694369-72694388 | MS.gene29842:CDS | 45.0% | |
| ACCCGTAAATGTTAGAACGG+TGG | - | chr3.4:72693965-72693984 | None:intergenic | 45.0% | |
| CAGGTCACTGGAAACCTAAA+AGG | + | chr3.4:72695097-72695116 | MS.gene29842:intron | 45.0% | |
| CCAATTTCTATTGGTGCACG+TGG | - | chr3.4:72692097-72692116 | None:intergenic | 45.0% | |
| CCACGTGCACCAATAGAAAT+TGG | + | chr3.4:72692094-72692113 | MS.gene29842:intron | 45.0% | |
| CCCACCGTTCTAACATTTAC+GGG | + | chr3.4:72693961-72693980 | MS.gene29842:intron | 45.0% | |
| CCCGTAAATGTTAGAACGGT+GGG | - | chr3.4:72693964-72693983 | None:intergenic | 45.0% | |
| CCGTATATTCTTTGGCAGGA+TGG | + | chr3.4:72691929-72691948 | MS.gene29842:intron | 45.0% | |
| CGCAACGGGAAAGATATTCA+AGG | + | chr3.4:72691084-72691103 | MS.gene29842:CDS | 45.0% | |
| CGGTATTAGCATCAGCTATC+AGG | - | chr3.4:72694984-72695003 | None:intergenic | 45.0% | |
| CGTACAAGGGTTGGAATAAC+CGG | - | chr3.4:72694227-72694246 | None:intergenic | 45.0% | |
| CTAACAAGCTACCGTAGGTT+CGG | - | chr3.4:72695447-72695466 | None:intergenic | 45.0% | |
| CTGCATCAAAAACCCGAACT+TGG | - | chr3.4:72694744-72694763 | None:intergenic | 45.0% | |
| CTTGGGAGGACCTAAGTTTA+TGG | + | chr3.4:72693387-72693406 | MS.gene29842:intron | 45.0% | |
| CTTTGGCAGGATGGAATTAG+AGG | + | chr3.4:72691938-72691957 | MS.gene29842:intron | 45.0% | |
| GAACTCTAACAAGCTACCGT+AGG | - | chr3.4:72695452-72695471 | None:intergenic | 45.0% | |
| GAAGACTGATACTTCGGCTT+TGG | + | chr3.4:72691056-72691075 | MS.gene29842:CDS | 45.0% | |
| GAATGCTTGGAAGTGGAGAA+AGG | + | chr3.4:72691316-72691335 | MS.gene29842:CDS | 45.0% | |
| GAGTCCATGGCGGTATTAAA+GGG | + | chr3.4:72695226-72695245 | MS.gene29842:CDS | 45.0% | |
| GCACCCCAATGGACAAATAT+TGG | + | chr3.4:72695150-72695169 | MS.gene29842:CDS | 45.0% | |
| GCGGTATTAAAGGGACGAAT+GGG | + | chr3.4:72695235-72695254 | MS.gene29842:CDS | 45.0% | |
| GCTGTCTTAGTTACCACTTG+TGG | + | chr3.4:72692981-72693000 | MS.gene29842:intron | 45.0% | |
| GTAATCACCTGCGTATGAAG+TGG | - | chr3.4:72693805-72693824 | None:intergenic | 45.0% | |
| GTGTCTTGTCTTTGTAGCTG+AGG | + | chr3.4:72694090-72694109 | MS.gene29842:intron | 45.0% | |
| TAGTGCTATAACCAACGCAG+TGG | + | chr3.4:72694587-72694606 | MS.gene29842:CDS | 45.0% | |
| TATGGTATCTCTCAGGTCAC+TGG | + | chr3.4:72695085-72695104 | MS.gene29842:intron | 45.0% | |
| TCAGCCCTAACGACTTATGA+AGG | + | chr3.4:72694473-72694492 | MS.gene29842:intron | 45.0% | |
| TCATAACCCACTTCATACGC+AGG | + | chr3.4:72693795-72693814 | MS.gene29842:intron | 45.0% | |
| TCCTGTTCAACGCTAGAATG+TGG | + | chr3.4:72693984-72694003 | MS.gene29842:intron | 45.0% | |
| TGTTAGAGCCCTCTCAAATG+TGG | - | chr3.4:72693433-72693452 | None:intergenic | 45.0% | |
| TGTTGTATGTGGGTGTGGAT+TGG | - | chr3.4:72692685-72692704 | None:intergenic | 45.0% | |
| ! | AATATTGGCTACCGGGAATC+AGG | + | chr3.4:72695165-72695184 | MS.gene29842:CDS | 45.0% |
| ! | ACCACATTCTAGCGTTGAAC+AGG | - | chr3.4:72693988-72694007 | None:intergenic | 45.0% |
| ! | ATCTTTTAGCCCAGACACAG+AGG | + | chr3.4:72695399-72695418 | MS.gene29842:CDS | 45.0% |
| ! | GTGAGGAGGATTTTCGGATA+AGG | - | chr3.4:72690870-72690889 | None:intergenic | 45.0% |
| ! | GTTACGGTGAGGAGGATTTT+CGG | - | chr3.4:72690876-72690895 | None:intergenic | 45.0% |
| ! | GTTAGAACTAAAGCACCAGC+TGG | - | chr3.4:72691588-72691607 | None:intergenic | 45.0% |
| ! | TCAAGTGTTGTATGTGGGTG+TGG | - | chr3.4:72692690-72692709 | None:intergenic | 45.0% |
| ! | TGGATGTTTTCCGCAATCCT+AGG | + | chr3.4:72694607-72694626 | MS.gene29842:CDS | 45.0% |
| !! | AAGGAAAACTTGATGGTGGC+AGG | + | chr3.4:72694388-72694407 | MS.gene29842:CDS | 45.0% |
| !! | AGTCAGAATCGGAGGTGTTA+CGG | - | chr3.4:72690892-72690911 | None:intergenic | 45.0% |
| !! | TGGAAACCTAAAAGGGCACT+TGG | + | chr3.4:72695105-72695124 | MS.gene29842:CDS | 45.0% |
| !!! | AGATGGGAAGTTTTTGGCCA+TGG | + | chr3.4:72695285-72695304 | MS.gene29842:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTGTTATT+AGG | + | chr3.4:72691294-72691313 | MS.gene29842:intron | 5.0% |
| AATGCTTCTGCTAGTCCGGA+TGG | + | chr3.4:72694922-72694941 | MS.gene29842:CDS | 50.0% | |
| ACAAACAGAGCCTCTGTGTC+TGG | - | chr3.4:72695412-72695431 | None:intergenic | 50.0% | |
| AGCTGATGCTAATACCGGGA+AGG | + | chr3.4:72694987-72695006 | MS.gene29842:CDS | 50.0% | |
| AGGACACAACATGCAGGTTG+TGG | + | chr3.4:72695185-72695204 | MS.gene29842:CDS | 50.0% | |
| AGGGACGAATGGGTGCAATA+AGG | + | chr3.4:72695245-72695264 | MS.gene29842:CDS | 50.0% | |
| AGGTGGAAAGTGAGCAGCTT+GGG | + | chr3.4:72693370-72693389 | MS.gene29842:intron | 50.0% | |
| ATCGTCTTCGAAGTCGGAGT+CGG | - | chr3.4:72690915-72690934 | None:intergenic | 50.0% | |
| CAAACAGAGCCTCTGTGTCT+GGG | - | chr3.4:72695411-72695430 | None:intergenic | 50.0% | |
| CAGAACCCCGAACAGATTGT+TGG | - | chr3.4:72692859-72692878 | None:intergenic | 50.0% | |
| CTCTCGTGAAGACCTTGACA+AGG | + | chr3.4:72691194-72691213 | MS.gene29842:CDS | 50.0% | |
| GACACAGAGGCTCTGTTTGT+TGG | + | chr3.4:72695412-72695431 | MS.gene29842:CDS | 50.0% | |
| GAGGCGGACCCCTTTATATA+AGG | + | chr3.4:72691957-72691976 | MS.gene29842:intron | 50.0% | |
| GCATGTTGTGTCCTGATTCC+CGG | - | chr3.4:72695179-72695198 | None:intergenic | 50.0% | |
| GGAATCAGGACACAACATGC+AGG | + | chr3.4:72695179-72695198 | MS.gene29842:CDS | 50.0% | |
| GGACACAACATGCAGGTTGT+GGG | + | chr3.4:72695186-72695205 | MS.gene29842:CDS | 50.0% | |
| GGAGTCCATGGCGGTATTAA+AGG | + | chr3.4:72695225-72695244 | MS.gene29842:CDS | 50.0% | |
| GGCGGTATTAAAGGGACGAA+TGG | + | chr3.4:72695234-72695253 | MS.gene29842:CDS | 50.0% | |
| GGGACGAATGGGTGCAATAA+GGG | + | chr3.4:72695246-72695265 | MS.gene29842:CDS | 50.0% | |
| GGGAGCTTCTTTGCAAGGTA+GGG | + | chr3.4:72694422-72694441 | MS.gene29842:intron | 50.0% | |
| GGGGCCTTCATAAGTCGTTA+GGG | - | chr3.4:72694480-72694499 | None:intergenic | 50.0% | |
| TCGTCCCTTTAATACCGCCA+TGG | - | chr3.4:72695233-72695252 | None:intergenic | 50.0% | |
| TCTTTGCAGTGGGTCGTTGA+GGG | + | chr3.4:72694696-72694715 | MS.gene29842:intron | 50.0% | |
| TGGCAGGATGGAATTAGAGG+CGG | + | chr3.4:72691941-72691960 | MS.gene29842:intron | 50.0% | |
| TTCTTTGCAGTGGGTCGTTG+AGG | + | chr3.4:72694695-72694714 | MS.gene29842:intron | 50.0% | |
| ! | ACTAAAGCACCAGCTGGATG+TGG | - | chr3.4:72691582-72691601 | None:intergenic | 50.0% |
| ! | GTTCTTGGGGACAGTACTGA+AGG | + | chr3.4:72694958-72694977 | MS.gene29842:CDS | 50.0% |
| ! | TGATTTGCACTCGCGAGACA+GGG | - | chr3.4:72694354-72694373 | None:intergenic | 50.0% |
| !! | GAAAACTTGATGGTGGCAGG+TGG | + | chr3.4:72694391-72694410 | MS.gene29842:CDS | 50.0% |
| !! | TGTATGTGGGTGTGGATTGG+TGG | - | chr3.4:72692682-72692701 | None:intergenic | 50.0% |
| CAGGTGGAAAGTGAGCAGCT+TGG | + | chr3.4:72693369-72693388 | MS.gene29842:intron | 55.0% | |
| CCATGGGGAGCTTCTTTGCA+AGG | + | chr3.4:72694417-72694436 | MS.gene29842:CDS | 55.0% | |
| CCTTGCAAAGAAGCTCCCCA+TGG | - | chr3.4:72694420-72694439 | None:intergenic | 55.0% | |
| GCGAGTGCAAATCAGCACCA+TGG | + | chr3.4:72694360-72694379 | MS.gene29842:CDS | 55.0% | |
| GCGGAAAACATCCACTGCGT+TGG | - | chr3.4:72694601-72694620 | None:intergenic | 55.0% | |
| GGGGAGCTTCTTTGCAAGGT+AGG | + | chr3.4:72694421-72694440 | MS.gene29842:intron | 55.0% | |
| GGGGGCCTTCATAAGTCGTT+AGG | - | chr3.4:72694481-72694500 | None:intergenic | 55.0% | |
| GTCGGAGTCGGAGTCAGAAT+CGG | - | chr3.4:72690903-72690922 | None:intergenic | 55.0% | |
| TGGAAAGTGAGCAGCTTGGG+AGG | + | chr3.4:72693373-72693392 | MS.gene29842:intron | 55.0% | |
| TTGGTGCACGTGGAAGAACG+AGG | - | chr3.4:72692087-72692106 | None:intergenic | 55.0% | |
| ! | AGAGGCTCTGTTTGTTGGCG+TGG | + | chr3.4:72695417-72695436 | MS.gene29842:CDS | 55.0% |
| ! | CTGATTTGCACTCGCGAGAC+AGG | - | chr3.4:72694355-72694374 | None:intergenic | 55.0% |
| !! | AAAGTCTGCTGGCTCAGCCA+TGG | - | chr3.4:72695305-72695324 | None:intergenic | 55.0% |
| !! | GAATCGGAGGTGTTACGGTG+AGG | - | chr3.4:72690887-72690906 | None:intergenic | 55.0% |
| !! | TCGGCTTTGGAAGCACGCAA+CGG | + | chr3.4:72691069-72691088 | MS.gene29842:CDS | 55.0% |
| ATGGTGGCAGGTGGCTTCCA+TGG | + | chr3.4:72694400-72694419 | MS.gene29842:CDS | 60.0% | |
| GGAGTCGGAGTCAGAATCGG+AGG | - | chr3.4:72690900-72690919 | None:intergenic | 60.0% | |
| TCGTCTGCTTGGCACCCCAA+TGG | + | chr3.4:72695139-72695158 | MS.gene29842:CDS | 60.0% | |
| TGGTGGCAGGTGGCTTCCAT+GGG | + | chr3.4:72694401-72694420 | MS.gene29842:CDS | 60.0% | |
| TTGCACTCGCGAGACAGGGT+GGG | - | chr3.4:72694350-72694369 | None:intergenic | 60.0% | |
| TTTGCACTCGCGAGACAGGG+TGG | - | chr3.4:72694351-72694370 | None:intergenic | 60.0% | |
| !! | CGGCTTTGGAAGCACGCAAC+GGG | + | chr3.4:72691070-72691089 | MS.gene29842:CDS | 60.0% |
| !! | TCGGAGGTGTTACGGTGAGG+AGG | - | chr3.4:72690884-72690903 | None:intergenic | 60.0% |
| GGCGTGGCTGACCGAACCTA+CGG | + | chr3.4:72695433-72695452 | MS.gene29842:CDS | 65.0% | |
| GGTGGCAGGTGGCTTCCATG+GGG | + | chr3.4:72694402-72694421 | MS.gene29842:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72690773 | 72695513 | 72690773 | ID=MS.gene29842 |
| chr3.4 | mRNA | 72690773 | 72695513 | 72690773 | ID=MS.gene29842.t1;Parent=MS.gene29842 |
| chr3.4 | exon | 72690773 | 72690943 | 72690773 | ID=MS.gene29842.t1.exon1;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72690773 | 72690943 | 72690773 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72691048 | 72691215 | 72691048 | ID=MS.gene29842.t1.exon2;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72691048 | 72691215 | 72691048 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72691316 | 72691402 | 72691316 | ID=MS.gene29842.t1.exon3;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72691316 | 72691402 | 72691316 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72694107 | 72694241 | 72694107 | ID=MS.gene29842.t1.exon4;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72694107 | 72694241 | 72694107 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72694328 | 72694438 | 72694328 | ID=MS.gene29842.t1.exon5;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72694328 | 72694438 | 72694328 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72694537 | 72694628 | 72694537 | ID=MS.gene29842.t1.exon6;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72694537 | 72694628 | 72694537 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72694705 | 72694810 | 72694705 | ID=MS.gene29842.t1.exon7;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72694705 | 72694810 | 72694705 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72694922 | 72695008 | 72694922 | ID=MS.gene29842.t1.exon8;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72694922 | 72695008 | 72694922 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| chr3.4 | exon | 72695100 | 72695513 | 72695100 | ID=MS.gene29842.t1.exon9;Parent=MS.gene29842.t1 |
| chr3.4 | CDS | 72695100 | 72695513 | 72695100 | ID=cds.MS.gene29842.t1;Parent=MS.gene29842.t1 |
| Gene Sequence |
| Protein sequence |
