AlfalfaGEDB | MS.gene51650

M. sativa cultivar XinJiangDaYe / MS.gene51650

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00400.35 PF12894.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51650.t1	XP_024635317.1	95.3	448	20	1	1	448	1	447	4.00E-247	863.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51650.t1	Q9Y7K5	29.0	383	245	10	66	444	66	425	2.5e-32	141.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51650.t1	G7J0E2	95.3	448	20	1	1	448	1	447	2.9e-247	863.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene51650	0.843445	1.39E-58	-1.69E-46
MS.gene049378	MS.gene51650	0.838353	3.02E-57	-1.69E-46
MS.gene049419	MS.gene51650	-0.870573	1.32E-66	-1.69E-46
MS.gene049424	MS.gene51650	0.821034	5.00E-53	-1.69E-46
MS.gene049669	MS.gene51650	0.821173	4.65E-53	-1.69E-46
MS.gene050105	MS.gene51650	0.89977	1.43E-77	-1.69E-46
MS.gene050312	MS.gene51650	0.811816	5.79E-51	-1.69E-46
MS.gene050442	MS.gene51650	0.814821	1.27E-51	-1.69E-46
MS.gene050508	MS.gene51650	0.816699	4.83E-52	-1.69E-46
MS.gene050605	MS.gene51650	0.825541	4.43E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene47479	MS.gene51650	PPI
MS.gene51650	MS.gene26532	PPI
MS.gene51650	MS.gene29842	PPI
MS.gene51650	MS.gene35613	PPI
MS.gene51650	MS.gene043662	PPI
MS.gene51650	MS.gene39623	PPI
MS.gene51650	MS.gene02469	PPI
MS.gene51650	MS.gene008767	PPI
MS.gene51650	MS.gene23196	PPI
MS.gene51650	MS.gene30433	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51650.t1	MTR_3g010010	98.884	448	4	1	1	448	43	489	0.0	920
MS.gene51650.t1	MTR_3g010010	98.884	448	4	1	1	448	1	447	0.0	920
MS.gene51650.t1	MTR_2g028050	73.378	447	119	0	1	447	1	447	0.0	684
MS.gene51650.t1	MTR_7g022190	66.019	412	139	1	35	446	28	438	0.0	596
MS.gene51650.t1	MTR_3g074070	58.250	400	166	1	49	448	59	457	1.22e-178	507
MS.gene51650.t1	MTR_3g074070	58.396	399	165	1	50	448	88	485	1.96e-177	505
MS.gene51650.t1	MTR_3g074070	58.105	401	166	2	49	448	59	458	2.04e-177	504
MS.gene51650.t1	MTR_3g010110	75.163	306	52	3	1	305	1	283	1.06e-159	453
MS.gene51650.t1	MTR_3g074070	59.621	317	127	1	132	448	28	343	6.92e-144	414
MS.gene51650.t1	MTR_3g074070	58.194	299	124	1	150	448	1	298	2.09e-131	381

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene51650.t1	AT1G55680	77.162	451	94	2	1	448	1	445	717
MS.gene51650.t1	AT3G13340	80.583	412	80	0	37	448	36	447	713
MS.gene51650.t1	AT3G13340	80.583	412	80	0	37	448	36	447	713
MS.gene51650.t1	AT3G13340	80.583	412	80	0	37	448	36	447	713
MS.gene51650.t1	AT5G56190	72.788	452	114	4	1	448	1	447	698
MS.gene51650.t1	AT5G56190	72.788	452	114	4	1	448	1	447	698
MS.gene51650.t1	AT5G56190	73.696	441	109	3	10	448	6	441	698
MS.gene51650.t1	AT5G56190	72.788	452	114	4	1	448	1	447	698
MS.gene51650.t1	AT5G56190	73.696	441	109	3	10	448	6	441	698
MS.gene51650.t1	AT5G56190	72.788	452	114	4	1	448	1	447	698

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Find 117 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAATCTTCTGGTTGC+TGG	0.366888	3.4:-4868504	MS.gene51650:CDS
AAAGGGTTATTCACCTCTGA+TGG	0.553941	3.4:+4868756	None:intergenic
AACCCCAATGAAAAGGGATT+CGG	0.487207	3.4:+4866453	None:intergenic
AACCCCTCCAATAGACTTCC+AGG	0.350840	3.4:+4868558	None:intergenic
AACCTTTGCTACTGGAAACC+AGG	0.567978	3.4:-4866704	MS.gene51650:CDS
AAGAAGAGGACAAGACATCC+AGG	0.448707	3.4:-4870447	MS.gene51650:CDS
AAGACATCCAGGGGATTCCT+TGG	0.444253	3.4:-4870436	MS.gene51650:CDS
AAGTCAGTGGCAGTGTTGAA+GGG	0.588027	3.4:-4866643	MS.gene51650:CDS
AATATGTCTCATCGCCAAGG+TGG	0.738255	3.4:-4870790	MS.gene51650:CDS
AATATTCAGCATCACCACCT+TGG	0.588906	3.4:+4870776	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAGGTAGAGTCTAA+TGG	+	chr3.4:4869565-4869584	None:intergenic	30.0%
AAAAACAGGTAGAGTCTAAT+GGG	+	chr3.4:4869564-4869583	None:intergenic	30.0%
ACAGCATCAAATAATGATTG+TGG	-	chr3.4:4869898-4869917	MS.gene51650:intron	30.0%
ACATAAAACAAATCCTATGG+GGG	+	chr3.4:4869620-4869639	None:intergenic	30.0%
AGAAGGAAAACTAAATACCT+AGG	+	chr3.4:4869784-4869803	None:intergenic	30.0%
AGCATTGCTTTAATAATTGG+TGG	-	chr3.4:4869381-4869400	MS.gene51650:CDS	30.0%
ATATAATCGCTATGACATAG+GGG	-	chr3.4:4867446-4867465	MS.gene51650:CDS	30.0%
ATATTCATCTACATCAGACT+CGG	+	chr3.4:4866496-4866515	None:intergenic	30.0%
ATGTATATGACGTGAAAAGT+GGG	-	chr3.4:4870625-4870644	MS.gene51650:intron	30.0%
ATTATTCATTCGCATCATCA+TGG	-	chr3.4:4870424-4870443	MS.gene51650:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	4866378	4870809	4866378	ID=MS.gene51650
chr3.4	mRNA	4866378	4870809	4866378	ID=MS.gene51650.t1;Parent=MS.gene51650
chr3.4	exon	4870663	4870809	4870663	ID=MS.gene51650.t1.exon1;Parent=MS.gene51650.t1
chr3.4	CDS	4870663	4870809	4870663	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4870337	4870504	4870337	ID=MS.gene51650.t1.exon2;Parent=MS.gene51650.t1
chr3.4	CDS	4870337	4870504	4870337	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4869323	4869409	4869323	ID=MS.gene51650.t1.exon3;Parent=MS.gene51650.t1
chr3.4	CDS	4869323	4869409	4869323	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4868770	4868904	4868770	ID=MS.gene51650.t1.exon4;Parent=MS.gene51650.t1
chr3.4	CDS	4868770	4868904	4868770	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4868476	4868586	4868476	ID=MS.gene51650.t1.exon5;Parent=MS.gene51650.t1
chr3.4	CDS	4868476	4868586	4868476	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4867402	4867493	4867402	ID=MS.gene51650.t1.exon6;Parent=MS.gene51650.t1
chr3.4	CDS	4867402	4867493	4867402	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4867200	4867305	4867200	ID=MS.gene51650.t1.exon7;Parent=MS.gene51650.t1
chr3.4	CDS	4867200	4867305	4867200	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4866908	4866994	4866908	ID=MS.gene51650.t1.exon8;Parent=MS.gene51650.t1
chr3.4	CDS	4866908	4866994	4866908	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1
chr3.4	exon	4866378	4866791	4866378	ID=MS.gene51650.t1.exon9;Parent=MS.gene51650.t1
chr3.4	CDS	4866378	4866791	4866378	ID=cds.MS.gene51650.t1;Parent=MS.gene51650.t1

Gene Sequence

>MS.gene51650

ATGTCTCATCGCCAAGGTGGTGATGCTGAATATTTTGCGGATGAATATGAAATGGAGGATGTAGAGGATGAAATTGATATTGATGGTGAATCTATTAATAGAGAGGGAGGCGATGCCGAGTCTGATGTAGATGAATATGATTACTCGGTTCGTAAGATGCTGCTTCTTATGTTTTTACAATTTTTACTCTGTTATGAATATGATGTACATGGTGTTTTATCCTCCTTCTAAGTAAATAATTCATCAAGCAAATGTAAATAGTTAAATTTATCTTCCTATGAGTAATATTGTAGTTATGGTGGCAGAGTAGTAAAGCTGTAGACACTACAGCTGCTCAAGCAAGAAGAGGACAAGACATCCAGGGGATTCCTTGGGATAGCCTTAGCATCACCAGAGAAAGGTATCGGCAAACTAGGCTCGATCAATACAAGAATTATGAAAATATCCCCCATTCAGGGGACAGGTCAGGGAAGGTAACAATTTGATGCCTTTTTTTTTTGATATTTCAGAGAAAAACTTCTTTAATCATGTCATTGGTCATAACTTATGACGATATAAATAAACCATCGTTACGTAATTCACCACAATTCATAGAGAACCGTGGACCGGTTAGCGAGTGCTGGCTCGCGGCACTTTTGCAGATTGGTTCGCCCAATTTCATGAAAGGAATCTGCGTACCAGAGAGGCAAAACCATCTGTTTTAATTGAGCATAATAATATCAGTGAAATAAAAACAAGTTAAAGAAACTGACATTTAACTACTACACTTGCATTGGAAAGTGCTCCTTGCTTTAAAAAGTGAGATATCACTGGCCCACAAGTGTATTGCACCTCGCCGTACACCGGAGCTTTGTTCTACACTCTAATTTAGTTTACTCACCTCTATGTTTTTCTTATCTACTGTAATGACCGAGTTCAAGCCTTGATTGCGACATTTTTTCCTAAGAAAATGCTAAAAATCGTTTCAATCAGACTCGAACTCAGAGCCCCTTAGTTGCAAACCAATCCTTAACCACTACGCCAGGAGATATACTTAGTATTATCTGTATGCAAAATATATAAATAAAAATATAATCGCTATGACATAGGGGTGGTCATGGAACCCCTGTCATAACCAAGATCCGCCATTGGGGTATACATAGTCGATACGTCTTTTTTTGGTGGAATGTTAATTACTCTACTAGCAAGCTAATTTAGTAGATTCAGTGCAATAGTATTTATTTATTATTTACATATTTGGCCCCCTCAAATATACCTACAAAGCTCCGCCACTAAATACTTTGAGGGTTGCGTACCACATACCCGAACCCATACCACACACTGAAAAGAATTGTGAACCAGATGACTATGATATAAACATAACCTATGCTTACCTGTTTATTATTATCTATATCAAACAGGATTGTAAAAGCACGGACAAAGGATACTCATTTTATGAGTTTAGGAGAAATTCAAGATCAGCAAAATCAACAATTCTTCATTTTCAGGTAAGCTGTAGCCTGTATCTACTCTGGTTTCTATAATGGATTAAGGATGCACTAGGACATTTAACTGCACAATGGCTCTGTTTAACTGTTCTATATAAAAGTTAGAAGTTTTGTTTTTTTACACAAATAAAGTTAGAAGTTAAATCAGCTTATTACTGTCAGAAAAATTTATCTTGTGGACAGTAAAATACTTGATTGCGGCTTCAAATCAACAGGTGCTATGTAACTGAAATTGTTAGCGAGAACTGTGAGGTCTTCACAGCTGAAATATGCGATTTATATATTATGTCAAAATTGTGCAGTCTGTTCATAGGATGTGAATCTTGAGTAGTACCTGGCATGTCATAGGCTTTGAAGAGATACGATCTTGCTTGCTTGACTGATATTCCCTCTTTTTTTTTTTTTTATGCTTATGCAGTTGAGGAATTTGGTTTGGGCTACATCAAAGCATGATGTATACCTTATGTCACAGTTCTCAGTGACACACTGGTCTTCTTTGACCTGCACAAGTTCTGAAGTACTCAATGTTTCTGGACACGTTGCACCATCAGAGGTGAATAACCCTTTACCTAATGCTTTTACTTGCATAGCCCTTTAAATCATGTTGCACCACCACCATCACGTAGCACGAGGTCTAAATGATGGATTGATATTTAAATGTTCATTGCATAAATTTTAAGAAAAAAAATGATCAATCATCATCGTGATCTTACATGTTATCAATTTTTATTGTCAGAAACATCCTGGAAGTCTATTGGAGGGGTTCACACACACTCAAGTTAGCACACTTGCAGTAAAAGATAATCTTCTGGTTGCTGGAGGATTTCAGGGTGAACTTATTTGCAAGGTAAAAATGTTATTTTGTTTTTGTTTTGAGATAATCTCTACTTTGTTTTGTGGATAGAGCATTTTTTTAAATCTGTTGTGGATAGAGCATTAAGTATAACTTGTAATCATGTACATCCGCGAAACATTTGAACATAATGTAATGAATGCAAAGCACTGCTTGCATATGCAACATGTACATGCAGACATGTGACTTACATGTGGTAATGAGTAACTTTTTCAGGTAATATTGTAAAAGGCTAACATATCTTTTTCATCTATGTAAAGATACTGGTTTTCCCTTTAATCAACGTCAAAATCTTTTGTTTGTGATCCCTGTAAAGTCCTAAGTCTCTGCATTTGCTCCCTACCGCCAGCCTCTTTTACAAAAATGATGACTTAGCTAATAGATGTCCATCTTGCCATGCCACATGATATTAACAGCCTCATATAGCATCGAAATTGGATGATGATGTGGCGTTGAGGTTTATTTTCGTCGTCCCATCCTCCATTGCCACCCCCACTTCACTTTGTTTGCTGTGGTGCTTGGTTCATCATTGTACTAATTGTAGTTTATAAATAAGATTTATGTTCTGGGAAGATTTGCTGAATTTTCTCATTTGTTGCTTCCTAAATATCTCACAATTTTAAGTTTTTTGAAATTGTATAGACCACATGGAACTATTTAATGAGCATTGCTTTAATAATTGGTGGAGTCCTAGAGCGTTGCTACAACTTTCTCCTTCAATTCGAGCCTTAGTTTTTAGCTACTTCTCAAGGAATGCTTGAATTATCTTTTTCATTCATGTTATCTATGGTTCAGCTAATTAGGCATTTGCAGTTCTGCATATGCATATTTTGGTTCATCATTCCCATTAGACTCTACCTGTTTTTTTATAGTTATATTTGCAGATGCTATACATGTGTCCCCCATAGGATTTGTTTTATGTTTTAGAACCATCCGCTGATATACATCCATTACTTTCTTTGTTACTGAAATGCAGCACCTAGATCGACCTGGTGTCAGCTTTTGCTCAAGGACTACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGACTCACCTAGGTATTTAGTTTTCCTTCTCTTTAATTATTTTGATATTTTTAATAATGGATATTGGTACCGTGATTATTGATTTAACACACCTTTCCTGGTTTGTAGTGGTGCAATTCATTTCACAGCATCAAATAATGATTGTGGAATCAGAAACTTTGATATGGAGAAATTTCAACTTTCAAAGCATTTCCGTTTTCCCTGGCCAGTGAATGTGAGTCTCTTGGATTATGTTCTCATGTTTTAATTCCCTATCCCCTCTTAAATGAACAATTTTAGCATTAGGAAACATTGCTTACACTTAGGCTGTACTGTATGGATCAGTCGATTGACAATCCTCGTTATCTATTCCCACCCCACTGTGACTCCTTTGCTTTCTATTTATATTCCTATCTTTGCCTTTTTATGCTATGCTGCAGCATACTTCTCTCAGTCCAGATGGTAAGCTACTTCTGATTGTTGGAGACAATCCTGAAAGTATGTTGGTTGACTCTCAAAATGGAAAGGTAGTACTCTACGCCCTTTTCGGTCAAATAATCAATCACTTCTTCAATTATTTGCATCTGAAGAGTATATGATTGAAAATCGTCCTAATCTGATTTTTTTTATTTTTATTTTGCAGACTATTGCTCCATTATCTGGGCACTTAGATTATTCATTCGCATCATCATGGAATCCCGATGGGGTAACCTTTGCTACTGGAAACCAGGACAAAACCTGTCGGATTTGGGACATGCGGAATTTATCCAAGTCAGTGGCAGTGTTGAAGGGAAATCTCGGAGCCATCCGTTCAATCCGGCATTCTTCCGATGGCAAGTATATGGCTATAGCAGAGCCTGCAGATTTTGTGCATGTATATGACGTGAAAAGTGGGTATGAGAAAGAACAAGAAATTGATTTCTTTGGTGAGATATCAGGCATATCTTTCAGTCCAGATACCGAATCCCTTTTCATTGGGGTTTGGGATCGTACTTATGGTAGCCTTCTCGAATATGGCCGGCGCCATAATTACTCATACCTTGATTCAATGATTTAA

Protein sequence

>MS.gene51650.t1

MSHRQGGDAEYFADEYEMEDVEDEIDIDGESINREGGDAESDVDEYDYSSSKAVDTTAAQARRGQDIQGIPWDSLSITRERYRQTRLDQYKNYENIPHSGDRSGKDCKSTDKGYSFYEFRRNSRSAKSTILHFQLRNLVWATSKHDVYLMSQFSVTHWSSLTCTSSEVLNVSGHVAPSEKHPGSLLEGFTHTQVSTLAVKDNLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIYDSPSGAIHFTASNNDCGIRNFDMEKFQLSKHFRFPWPVNHTSLSPDGKLLLIVGDNPESMLVDSQNGKTIAPLSGHLDYSFASSWNPDGVTFATGNQDKTCRIWDMRNLSKSVAVLKGNLGAIRSIRHSSDGKYMAIAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRHNYSYLDSMI