Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30356.t1 | XP_004510438.1 | 97.3 | 224 | 6 | 0 | 1 | 224 | 1 | 224 | 9.20E-59 | 236.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30356.t1 | Q9SKI2 | 87.6 | 225 | 26 | 2 | 1 | 224 | 2 | 225 | 2.5e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30356.t1 | A0A1S2YV57 | 97.3 | 224 | 6 | 0 | 1 | 224 | 1 | 224 | 6.6e-59 | 236.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene30356 | 0.803737 | 3.02E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene30356 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene30356 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene049756 | MS.gene30356 | 0.818209 | 2.21E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene30356 | 0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene30356 | 0.836818 | 7.49E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene30356 | 0.838985 | 2.08E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene30356 | 0.801582 | 8.41E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene30356 | 0.818319 | 2.09E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene30356 | -0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene30356 | 0.831031 | 2.10E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene30356 | 0.847036 | 1.49E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene30356 | 0.849181 | 3.81E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene30356 | 0.836218 | 1.06E-56 | -1.69E-46 |
| MS.gene050780 | MS.gene30356 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene050824 | MS.gene30356 | 0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene30356 | 0.808954 | 2.40E-50 | -1.69E-46 |
| MS.gene050987 | MS.gene30356 | 0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene30356 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene051349 | MS.gene30356 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene30356 | 0.818895 | 1.54E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene30356 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene30356 | 0.836441 | 9.34E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene30356 | 0.839358 | 1.66E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene30356 | 0.831107 | 2.01E-55 | -1.69E-46 |
| MS.gene052309 | MS.gene30356 | -0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene30356 | 0.845057 | 5.15E-59 | -1.69E-46 |
| MS.gene052426 | MS.gene30356 | 0.802753 | 4.83E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene30356 | 0.801852 | 7.41E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene30356 | 0.806459 | 8.14E-50 | -1.69E-46 |
| MS.gene054658 | MS.gene30356 | 0.801821 | 7.51E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene30356 | 0.826225 | 3.05E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene30356 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene30356 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene30356 | -0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene30356 | 0.821436 | 4.04E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene30356 | 0.812653 | 3.80E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene30356 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene30356 | 0.816474 | 5.43E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene30356 | 0.828315 | 9.62E-55 | -1.69E-46 |
| MS.gene05795 | MS.gene30356 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene30356 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene30356 | 0.814366 | 1.60E-51 | -1.69E-46 |
| MS.gene059249 | MS.gene30356 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene059317 | MS.gene30356 | 0.830965 | 2.18E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene30356 | 0.840193 | 1.01E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene30356 | 0.803969 | 2.70E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene30356 | 0.837296 | 5.65E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene30356 | 0.824514 | 7.74E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene30356 | 0.817261 | 3.61E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene30356 | 0.807399 | 5.15E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene30356 | 0.838731 | 2.42E-57 | -1.69E-46 |
| MS.gene061040 | MS.gene30356 | -0.816502 | 5.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30356.t1 | MTR_8g019700 | 98.661 | 224 | 3 | 0 | 1 | 224 | 1 | 224 | 1.20e-160 | 443 |
| MS.gene30356.t1 | MTR_2g041190 | 86.607 | 224 | 29 | 1 | 1 | 224 | 1 | 223 | 7.92e-120 | 340 |
| MS.gene30356.t1 | MTR_1g069715 | 41.553 | 219 | 117 | 2 | 4 | 222 | 468 | 675 | 6.78e-48 | 167 |
| MS.gene30356.t1 | MTR_2g047875 | 40.179 | 224 | 121 | 3 | 4 | 224 | 3 | 216 | 1.15e-44 | 149 |
| MS.gene30356.t1 | MTR_7g097170 | 46.119 | 219 | 107 | 2 | 4 | 222 | 3 | 210 | 7.00e-43 | 144 |
| MS.gene30356.t1 | MTR_4g057565 | 27.602 | 221 | 157 | 3 | 4 | 222 | 7 | 226 | 1.84e-18 | 80.9 |
| MS.gene30356.t1 | MTR_2g100420 | 25.294 | 170 | 115 | 2 | 53 | 222 | 45 | 202 | 4.37e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30356.t1 | AT2G06530 | 88.444 | 225 | 24 | 2 | 1 | 224 | 2 | 225 | 3.99e-127 | 358 |
| MS.gene30356.t1 | AT2G06530 | 89.268 | 205 | 20 | 2 | 21 | 224 | 1 | 204 | 3.87e-114 | 325 |
| MS.gene30356.t1 | AT1G03950 | 43.379 | 219 | 113 | 3 | 4 | 222 | 3 | 210 | 3.26e-54 | 173 |
| MS.gene30356.t1 | AT5G44560 | 39.367 | 221 | 133 | 1 | 4 | 224 | 3 | 222 | 6.88e-48 | 157 |
| MS.gene30356.t1 | AT5G44560 | 42.045 | 176 | 102 | 0 | 4 | 179 | 3 | 178 | 4.31e-45 | 149 |
| MS.gene30356.t1 | AT5G44560 | 40.000 | 200 | 119 | 1 | 25 | 224 | 4 | 202 | 6.92e-43 | 144 |
| MS.gene30356.t1 | AT5G44560 | 37.857 | 140 | 86 | 1 | 4 | 142 | 3 | 142 | 1.35e-26 | 100 |
| MS.gene30356.t1 | AT5G22950 | 28.704 | 216 | 149 | 3 | 11 | 222 | 14 | 228 | 2.56e-17 | 78.2 |
| MS.gene30356.t1 | AT1G17730 | 25.000 | 196 | 133 | 2 | 27 | 222 | 19 | 200 | 8.41e-13 | 65.5 |
Find 48 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGTTGCTTTGAGAATTC+AGG | 0.273393 | 8.1:-79129987 | MS.gene30356:intron |
| CAAGCTTAAATCACAACTTC+AGG | 0.310848 | 8.1:-79130008 | MS.gene30356:CDS |
| AAATACCATTTGTCCTTGTT+TGG | 0.313748 | 8.1:+79130731 | None:intergenic |
| CTGCGCCAGCAGCAAAGAAC+AGG | 0.338116 | 8.1:-79127161 | MS.gene30356:CDS |
| TGCTGCTGGCGCAGCGGTTG+AGG | 0.345574 | 8.1:+79127170 | None:intergenic |
| TTAGGGTGCTGTGAGGGTTA+TGG | 0.358019 | 8.1:-79130074 | MS.gene30356:intron |
| ATCATCATTGCCCGTTGGTT+CGG | 0.375176 | 8.1:+79127128 | None:intergenic |
| GCAACCCTGTTCTTTGCTGC+TGG | 0.393522 | 8.1:+79127156 | None:intergenic |
| GGAACTTGTTTCTGAGGTAA+TGG | 0.405606 | 8.1:-79129374 | MS.gene30356:CDS |
| GAACTTGTTTCTGAGGTAAT+GGG | 0.408793 | 8.1:-79129373 | MS.gene30356:CDS |
| AAGCAATGGGTCAAATGAAT+AGG | 0.409703 | 8.1:-79129459 | MS.gene30356:CDS |
| TGCATTATCTTCTGTAAAGA+AGG | 0.410358 | 8.1:+79129424 | None:intergenic |
| GCAATTGATGATGCTTTAGA+AGG | 0.423361 | 8.1:-79129346 | MS.gene30356:CDS |
| CTGAAATCTACTCAAGCAAT+GGG | 0.427818 | 8.1:-79129505 | MS.gene30356:CDS |
| AGCAAAGAACAGGGTTGCTC+AGG | 0.453290 | 8.1:-79127151 | MS.gene30356:CDS |
| GTTGCTCAGGCCGAACCAAC+GGG | 0.456495 | 8.1:-79127138 | MS.gene30356:CDS |
| GAATGCCAAACAAGGACAAA+TGG | 0.480489 | 8.1:-79130736 | MS.gene30356:intron |
| AAAGGAGTTACTAAAGCAAT+GGG | 0.498174 | 8.1:-79129472 | MS.gene30356:CDS |
| TGGAATAGATGATGATCTAC+AGG | 0.501443 | 8.1:-79127103 | MS.gene30356:CDS |
| GCAGCGGTTGAGGTTGATGC+AGG | 0.505074 | 8.1:+79127180 | None:intergenic |
| AGTCTATTAGAGAAATTGAA+AGG | 0.508512 | 8.1:-79130812 | MS.gene30356:CDS |
| TGAAAGGCAGAATGAGAAGA+TGG | 0.511267 | 8.1:-79129395 | MS.gene30356:CDS |
| AGATAATGCAAGAGTTTGAA+AGG | 0.512294 | 8.1:-79129411 | MS.gene30356:CDS |
| AAGCTTAAATCACAACTTCA+GGG | 0.512790 | 8.1:-79130007 | MS.gene30356:CDS |
| GAAAGGAGTTACTAAAGCAA+TGG | 0.516989 | 8.1:-79129473 | MS.gene30356:CDS |
| TTTAGAAGGTGATGAAGAAG+AGG | 0.518323 | 8.1:-79129332 | MS.gene30356:CDS |
| GAACCAACGGGCAATGATGA+TGG | 0.518414 | 8.1:-79127126 | MS.gene30356:CDS |
| GGTTGCTCAGGCCGAACCAA+CGG | 0.520072 | 8.1:-79127139 | MS.gene30356:CDS |
| TGCTGTGAGGGTTATGGCCA+AGG | 0.523944 | 8.1:-79130068 | MS.gene30356:CDS |
| GCGAGTTCTGATAAGATCCT+TGG | 0.525743 | 8.1:+79130051 | None:intergenic |
| GTCTATTAGAGAAATTGAAA+GGG | 0.532893 | 8.1:-79130811 | MS.gene30356:CDS |
| CCACCATCATCATTGCCCGT+TGG | 0.548023 | 8.1:+79127123 | None:intergenic |
| AGGCTAGGTTAGATAACCTA+AGG | 0.562667 | 8.1:-79127083 | MS.gene30356:CDS |
| AATTTGTTAGGGTGCTGTGA+GGG | 0.568995 | 8.1:-79130080 | MS.gene30356:intron |
| AATCAAGTTCTTGATGAGAT+CGG | 0.569717 | 8.1:-79129289 | MS.gene30356:CDS |
| GAAGATGGAACTTGTTTCTG+AGG | 0.576457 | 8.1:-79129380 | MS.gene30356:CDS |
| CAATTTGTTAGGGTGCTGTG+AGG | 0.590012 | 8.1:-79130081 | MS.gene30356:intron |
| GTTCTTTGCTGCTGGCGCAG+CGG | 0.591986 | 8.1:+79127164 | None:intergenic |
| GGCAGTAGAAAGACTCCCGC+AGG | 0.602338 | 8.1:-79131087 | MS.gene30356:intron |
| TGCGCCAGCAGCAAAGAACA+GGG | 0.604491 | 8.1:-79127160 | MS.gene30356:CDS |
| ACTGAAATCTACTCAAGCAA+TGG | 0.611599 | 8.1:-79129506 | MS.gene30356:CDS |
| GAAATCTACTCAAGCAATGG+GGG | 0.624835 | 8.1:-79129503 | MS.gene30356:CDS |
| ATTAAGAAGAATGCCAAACA+AGG | 0.625704 | 8.1:-79130744 | MS.gene30356:CDS |
| TAGATGATGATCTACAGGCT+AGG | 0.626372 | 8.1:-79127098 | MS.gene30356:CDS |
| CCAACGGGCAATGATGATGG+TGG | 0.626681 | 8.1:-79127123 | MS.gene30356:CDS |
| GAAATTGAAAGGGAAAGACA+AGG | 0.636711 | 8.1:-79130801 | MS.gene30356:CDS |
| CGGAATCGATATCAACTCTG+AGG | 0.660467 | 8.1:-79129269 | MS.gene30356:intron |
| TGAAATCTACTCAAGCAATG+GGG | 0.673116 | 8.1:-79129504 | MS.gene30356:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTTTAAATAAAAAT+CGG | - | chr8.1:79130356-79130375 | MS.gene30356:intron | 0.0% |
| !!! | ATTTTTTAAAATTATATAAT+CGG | + | chr8.1:79130015-79130034 | None:intergenic | 0.0% |
| !!! | TTTTAAAAAATATAATTTTT+TGG | - | chr8.1:79130024-79130043 | MS.gene30356:CDS | 0.0% |
| !! | AAAAAACAATAATTTAATAC+TGG | - | chr8.1:79127204-79127223 | MS.gene30356:intron | 10.0% |
| !! | AAAAACAATAATTTAATACT+GGG | - | chr8.1:79127205-79127224 | MS.gene30356:intron | 10.0% |
| !! | AAAACAAAAAAAAATTTACA+GGG | - | chr8.1:79130613-79130632 | MS.gene30356:intron | 10.0% |
| !! | ATAAACAAAATTTAATTATG+TGG | + | chr8.1:79129279-79129298 | None:intergenic | 10.0% |
| !! | TAAAAAAATCTGAAAAAAAT+GGG | + | chr8.1:79130404-79130423 | None:intergenic | 10.0% |
| !! | TAAAACAAAAAAAAATTTAC+AGG | - | chr8.1:79130612-79130631 | MS.gene30356:intron | 10.0% |
| !! | TTAAAAAAATCTGAAAAAAA+TGG | + | chr8.1:79130405-79130424 | None:intergenic | 10.0% |
| !! | TTTAAAAATCATGAAAAAAT+CGG | - | chr8.1:79129632-79129651 | MS.gene30356:intron | 10.0% |
| !!! | AAAACAAAAATATTTTTACA+GGG | + | chr8.1:79129154-79129173 | None:intergenic | 10.0% |
| !!! | AAAATTGATAATTACTTTTA+GGG | - | chr8.1:79127924-79127943 | MS.gene30356:intron | 10.0% |
| !!! | TAAAACAAAAATATTTTTAC+AGG | + | chr8.1:79129155-79129174 | None:intergenic | 10.0% |
| !! | AACTAAAGATAAAATAAAGT+CGG | - | chr8.1:79129050-79129069 | MS.gene30356:intron | 15.0% |
| !! | TTTGGAAATATGAAAAAAAA+TGG | - | chr8.1:79130042-79130061 | MS.gene30356:CDS | 15.0% |
| !!! | AATTTTCACTTTTAATCAAA+TGG | - | chr8.1:79127122-79127141 | MS.gene30356:CDS | 15.0% |
| !!! | ATTTTCACTTTTAATCAAAT+GGG | - | chr8.1:79127123-79127142 | MS.gene30356:CDS | 15.0% |
| !!! | CAAAATTGATAATTACTTTT+AGG | - | chr8.1:79127923-79127942 | MS.gene30356:intron | 15.0% |
| !!! | TCGATTTTTAAATCTATTTT+CGG | + | chr8.1:79129346-79129365 | None:intergenic | 15.0% |
| !! | AATAAGCTAAATACATCTTA+AGG | - | chr8.1:79130777-79130796 | MS.gene30356:CDS | 20.0% |
| !! | ACATTCAAATTAAACCAAAA+CGG | + | chr8.1:79127807-79127826 | None:intergenic | 20.0% |
| !! | CTAAAAACAAAAAACACTAA+TGG | - | chr8.1:79127741-79127760 | MS.gene30356:intron | 20.0% |
| !! | TGAAAAAAATGGGAAAAAAA+CGG | + | chr8.1:79130394-79130413 | None:intergenic | 20.0% |
| !!! | AATTGAGTTTTTTGGTTAAT+GGG | - | chr8.1:79127278-79127297 | MS.gene30356:intron | 20.0% |
| !!! | AGTTTTGTTTCAATTTGTTA+GGG | - | chr8.1:79128085-79128104 | MS.gene30356:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr8.1:79128988-79129007 | None:intergenic | 20.0% |
| !!! | TGAAAACAATTTGACTTTAT+TGG | + | chr8.1:79130717-79130736 | None:intergenic | 20.0% |
| !!! | TGTTTTAGTTTCATAGTTAA+CGG | - | chr8.1:79127824-79127843 | MS.gene30356:intron | 20.0% |
| !!! | TTAGTTGTATATTTTGTTGT+AGG | - | chr8.1:79127522-79127541 | MS.gene30356:intron | 20.0% |
| !!! | TTTTATTTGCTTTTCTAGTT+TGG | - | chr8.1:79127233-79127252 | MS.gene30356:intron | 20.0% |
| !!! | TTTTCACTTTTAATCAAATG+GGG | - | chr8.1:79127124-79127143 | MS.gene30356:CDS | 20.0% |
| ! | AAAATTTGAAGAATTACCTG+CGG | + | chr8.1:79127108-79127127 | None:intergenic | 25.0% |
| ! | AAACAAAAAACACTAATGGT+AGG | - | chr8.1:79127745-79127764 | MS.gene30356:intron | 25.0% |
| ! | AACAAAAAACACTAATGGTA+GGG | - | chr8.1:79127746-79127765 | MS.gene30356:intron | 25.0% |
| ! | AACTAAGTGCAATAGAAAAA+TGG | + | chr8.1:79127508-79127527 | None:intergenic | 25.0% |
| ! | ACAAATAAGTCAATTCAAAC+AGG | - | chr8.1:79130869-79130888 | MS.gene30356:intron | 25.0% |
| ! | ACTTATTTGTGTTTATCTAC+TGG | + | chr8.1:79130859-79130878 | None:intergenic | 25.0% |
| ! | AGAAGCTGTAACAATAATAA+TGG | - | chr8.1:79130926-79130945 | MS.gene30356:intron | 25.0% |
| ! | AGTCTATTAGAGAAATTGAA+AGG | - | chr8.1:79127364-79127383 | MS.gene30356:intron | 25.0% |
| ! | ATTCTGTTGAATTATCGTTT+AGG | + | chr8.1:79129827-79129846 | None:intergenic | 25.0% |
| ! | CAAAAAACACAATAATTGCA+GGG | + | chr8.1:79127565-79127584 | None:intergenic | 25.0% |
| ! | GAAAAATTGTGACTTTGATT+AGG | - | chr8.1:79127255-79127274 | MS.gene30356:intron | 25.0% |
| ! | GTCTATTAGAGAAATTGAAA+GGG | - | chr8.1:79127365-79127384 | MS.gene30356:intron | 25.0% |
| !! | AACGGTGTTAATTGTTATTA+GGG | - | chr8.1:79127842-79127861 | MS.gene30356:intron | 25.0% |
| !! | CAATAGTTTTTGAATTTGCA+AGG | + | chr8.1:79127625-79127644 | None:intergenic | 25.0% |
| !! | TAACGGTGTTAATTGTTATT+AGG | - | chr8.1:79127841-79127860 | MS.gene30356:intron | 25.0% |
| !! | TGTAAAACTTTTCAATCTGA+TGG | + | chr8.1:79128150-79128169 | None:intergenic | 25.0% |
| !!! | AATAATAGACTAGTCCTTTT+TGG | - | chr8.1:79128971-79128990 | MS.gene30356:intron | 25.0% |
| !!! | GAATTGAGTTTTTTGGTTAA+TGG | - | chr8.1:79127277-79127296 | MS.gene30356:intron | 25.0% |
| !!! | GAGTTTTGTTTCAATTTGTT+AGG | - | chr8.1:79128084-79128103 | MS.gene30356:intron | 25.0% |
| !!! | TGAGAAGTTTATTGCTTTTA+AGG | - | chr8.1:79128004-79128023 | MS.gene30356:intron | 25.0% |
| !!! | TGATTAGGAATTGAGTTTTT+TGG | - | chr8.1:79127270-79127289 | MS.gene30356:intron | 25.0% |
| AAAGGAGTTACTAAAGCAAT+GGG | - | chr8.1:79128704-79128723 | MS.gene30356:intron | 30.0% | |
| AAATACCATTTGTCCTTGTT+TGG | + | chr8.1:79127448-79127467 | None:intergenic | 30.0% | |
| AAATTTGAAGAATTACCTGC+GGG | + | chr8.1:79127107-79127126 | None:intergenic | 30.0% | |
| AACTTATCTGCTAAAATCCT+AGG | + | chr8.1:79128278-79128297 | None:intergenic | 30.0% | |
| AAGCTTAAATCACAACTTCA+GGG | - | chr8.1:79128169-79128188 | MS.gene30356:intron | 30.0% | |
| AAGTTCAGTGTATTATCAAC+TGG | + | chr8.1:79129882-79129901 | None:intergenic | 30.0% | |
| AATCAAGTTCTTGATGAGAT+CGG | - | chr8.1:79128887-79128906 | MS.gene30356:intron | 30.0% | |
| ACACAAAATTCTTCCTATTC+TGG | - | chr8.1:79129773-79129792 | MS.gene30356:intron | 30.0% | |
| AGATAATGCAAGAGTTTGAA+AGG | - | chr8.1:79128765-79128784 | MS.gene30356:intron | 30.0% | |
| AGTTCAGTGTATTATCAACT+GGG | + | chr8.1:79129881-79129900 | None:intergenic | 30.0% | |
| ATTAAGAAGAATGCCAAACA+AGG | - | chr8.1:79127432-79127451 | MS.gene30356:intron | 30.0% | |
| CCAAAAAACACAATAATTGC+AGG | + | chr8.1:79127566-79127585 | None:intergenic | 30.0% | |
| CTCAAACAAAAGAACTTACA+CGG | + | chr8.1:79127596-79127615 | None:intergenic | 30.0% | |
| CTGGGAAATCATATTGTTTA+AGG | + | chr8.1:79129863-79129882 | None:intergenic | 30.0% | |
| GAACAGGTATGTAATATGTT+TGG | - | chr8.1:79128042-79128061 | MS.gene30356:intron | 30.0% | |
| GGTATGTAATATGTTTGGTT+TGG | - | chr8.1:79128047-79128066 | MS.gene30356:intron | 30.0% | |
| GTCTGTAACATTACTTAATC+AGG | + | chr8.1:79127691-79127710 | None:intergenic | 30.0% | |
| TGCATTATCTTCTGTAAAGA+AGG | + | chr8.1:79128755-79128774 | None:intergenic | 30.0% | |
| TTTCATGCTCATTCATACTA+TGG | - | chr8.1:79128536-79128555 | MS.gene30356:intron | 30.0% | |
| ! | GTAAGTAACTGTGTTGTTAA+GGG | - | chr8.1:79127872-79127891 | MS.gene30356:intron | 30.0% |
| ! | TCGTTGTATTATATCCGTTT+TGG | - | chr8.1:79127790-79127809 | MS.gene30356:intron | 30.0% |
| ! | TGTAAGTAACTGTGTTGTTA+AGG | - | chr8.1:79127871-79127890 | MS.gene30356:intron | 30.0% |
| ! | TTTGTTAACAGAGCTTTTGA+GGG | - | chr8.1:79127320-79127339 | MS.gene30356:intron | 30.0% |
| ! | TTTTGTTAACAGAGCTTTTG+AGG | - | chr8.1:79127319-79127338 | MS.gene30356:intron | 30.0% |
| !! | AGCTTTTGAGGGAAAATAAA+AGG | - | chr8.1:79127331-79127350 | MS.gene30356:intron | 30.0% |
| !! | GATTGTGTTGTTATTTGAAC+AGG | - | chr8.1:79128026-79128045 | MS.gene30356:intron | 30.0% |
| !! | TTTTGGTTAATGGGTAGTTT+TGG | - | chr8.1:79127287-79127306 | MS.gene30356:intron | 30.0% |
| !!! | CCTGCAATTATTGTGTTTTT+TGG | - | chr8.1:79127563-79127582 | MS.gene30356:intron | 30.0% |
| !!! | TGTTTTAACTACGTCATATG+CGG | - | chr8.1:79127643-79127662 | MS.gene30356:intron | 30.0% |
| !!! | TTTTGTTTTAAAAAGGTCCC+TGG | - | chr8.1:79129165-79129184 | MS.gene30356:intron | 30.0% |
| !!! | TTTTGTTTTAAAAAGGTCCC+TGG | + | chr8.1:79129184-79129165 | None:intergenic | 30.0% |
| AAGCAATGGGTCAAATGAAT+AGG | - | chr8.1:79128717-79128736 | MS.gene30356:intron | 35.0% | |
| ACTGAAATCTACTCAAGCAA+TGG | - | chr8.1:79128670-79128689 | MS.gene30356:intron | 35.0% | |
| AGTGTTAAGTAGACCAGAAT+AGG | + | chr8.1:79129789-79129808 | None:intergenic | 35.0% | |
| CAAGCTTAAATCACAACTTC+AGG | - | chr8.1:79128168-79128187 | MS.gene30356:intron | 35.0% | |
| CAGTGTCTACAATTAATCTC+AGG | + | chr8.1:79128654-79128673 | None:intergenic | 35.0% | |
| CATTACTTAATCAGGCTACA+TGG | + | chr8.1:79127683-79127702 | None:intergenic | 35.0% | |
| CCACTAGTAATGAAAGAAGA+AGG | + | chr8.1:79127480-79127499 | None:intergenic | 35.0% | |
| CCTTCTTCTTTCATTACTAG+TGG | - | chr8.1:79127477-79127496 | MS.gene30356:intron | 35.0% | |
| CTGAAATCTACTCAAGCAAT+GGG | - | chr8.1:79128671-79128690 | MS.gene30356:intron | 35.0% | |
| GAAAGGAGTTACTAAAGCAA+TGG | - | chr8.1:79128703-79128722 | MS.gene30356:intron | 35.0% | |
| GAAATTGAAAGGGAAAGACA+AGG | - | chr8.1:79127375-79127394 | MS.gene30356:intron | 35.0% | |
| GATAACCTAAGGAAAATGTG+AGG | - | chr8.1:79131104-79131123 | MS.gene30356:CDS | 35.0% | |
| GCTACATGGCGTATTATATT+GGG | + | chr8.1:79127669-79127688 | None:intergenic | 35.0% | |
| TACAGCTTCTTTCTAAGCTA+GGG | + | chr8.1:79130916-79130935 | None:intergenic | 35.0% | |
| TGAAATCTACTCAAGCAATG+GGG | - | chr8.1:79128672-79128691 | MS.gene30356:intron | 35.0% | |
| TGTCTACAATTAATCTCAGG+AGG | + | chr8.1:79128651-79128670 | None:intergenic | 35.0% | |
| TTACAGCTTCTTTCTAAGCT+AGG | + | chr8.1:79130917-79130936 | None:intergenic | 35.0% | |
| TTTAGAAGGTGATGAAGAAG+AGG | - | chr8.1:79128844-79128863 | MS.gene30356:intron | 35.0% | |
| ! | TGAGCATGAAAGTATACACA+AGG | + | chr8.1:79128527-79128546 | None:intergenic | 35.0% |
| !! | CTTATTTTCATAAGCTCGCT+AGG | + | chr8.1:79130763-79130782 | None:intergenic | 35.0% |
| !! | GAACTTGTTTCTGAGGTAAT+GGG | - | chr8.1:79128803-79128822 | MS.gene30356:intron | 35.0% |
| !! | GCAATTGATGATGCTTTAGA+AGG | - | chr8.1:79128830-79128849 | MS.gene30356:intron | 35.0% |
| !! | GGATTTTAGCAGATAAGTTG+AGG | - | chr8.1:79128279-79128298 | MS.gene30356:intron | 35.0% |
| ACAGCTTCTTTCTAAGCTAG+GGG | + | chr8.1:79130915-79130934 | None:intergenic | 40.0% | |
| AGGCTAGGTTAGATAACCTA+AGG | - | chr8.1:79131093-79131112 | MS.gene30356:CDS | 40.0% | |
| ATGCTTGGTCAGCAAAAAAG+TGG | - | chr8.1:79130574-79130593 | MS.gene30356:intron | 40.0% | |
| CAAAACTCGCCCAAATTACA+GGG | - | chr8.1:79130673-79130692 | MS.gene30356:intron | 40.0% | |
| CAAAACTCGCCCAAATTACA+GGG | + | chr8.1:79130692-79130673 | None:intergenic | 40.0% | |
| CTCGTTATGTATCTGCAATG+AGG | + | chr8.1:79128504-79128523 | None:intergenic | 40.0% | |
| GAAATCTACTCAAGCAATGG+GGG | - | chr8.1:79128673-79128692 | MS.gene30356:intron | 40.0% | |
| GAATGCCAAACAAGGACAAA+TGG | - | chr8.1:79127440-79127459 | MS.gene30356:intron | 40.0% | |
| GGCTACATGGCGTATTATAT+TGG | + | chr8.1:79127670-79127689 | None:intergenic | 40.0% | |
| TAGATGATGATCTACAGGCT+AGG | - | chr8.1:79131078-79131097 | MS.gene30356:intron | 40.0% | |
| TCAAAACTCGCCCAAATTAC+AGG | - | chr8.1:79130672-79130691 | MS.gene30356:intron | 40.0% | |
| TCAAAACTCGCCCAAATTAC+AGG | + | chr8.1:79130691-79130672 | None:intergenic | 40.0% | |
| TGAAAGGCAGAATGAGAAGA+TGG | - | chr8.1:79128781-79128800 | MS.gene30356:intron | 40.0% | |
| TGCTTGGTCAGCAAAAAAGT+GGG | - | chr8.1:79130575-79130594 | MS.gene30356:intron | 40.0% | |
| TTGAAGCTTATTGTGCTCCT+AGG | - | chr8.1:79128258-79128277 | MS.gene30356:intron | 40.0% | |
| ! | TAGCCTGTCGCTTAGAATAT+CGG | - | chr8.1:79129917-79129936 | MS.gene30356:intron | 40.0% |
| !! | AATTTGTTAGGGTGCTGTGA+GGG | - | chr8.1:79128096-79128115 | MS.gene30356:intron | 40.0% |
| !! | GAAGATGGAACTTGTTTCTG+AGG | - | chr8.1:79128796-79128815 | MS.gene30356:intron | 40.0% |
| !! | GGAACTTGTTTCTGAGGTAA+TGG | - | chr8.1:79128802-79128821 | MS.gene30356:intron | 40.0% |
| !!! | ACTTTTTTGCTGACCAAGCA+TGG | + | chr8.1:79130575-79130594 | None:intergenic | 40.0% |
| CAACCGATATTCTAAGCGAC+AGG | + | chr8.1:79129923-79129942 | None:intergenic | 45.0% | |
| CGGAATCGATATCAACTCTG+AGG | - | chr8.1:79128907-79128926 | MS.gene30356:intron | 45.0% | |
| GACAAGTATCCGACATGTGT+GGG | - | chr8.1:79128373-79128392 | MS.gene30356:intron | 45.0% | |
| GCTTGGTCAGCAAAAAAGTG+GGG | - | chr8.1:79130576-79130595 | MS.gene30356:intron | 45.0% | |
| TGACAAGTATCCGACATGTG+TGG | - | chr8.1:79128372-79128391 | MS.gene30356:intron | 45.0% | |
| ! | ATCATCATTGCCCGTTGGTT+CGG | + | chr8.1:79131051-79131070 | None:intergenic | 45.0% |
| ! | CTGTCGCTTAGAATATCGGT+TGG | - | chr8.1:79129921-79129940 | MS.gene30356:intron | 45.0% |
| ! | GCGAGTTCTGATAAGATCCT+TGG | + | chr8.1:79128128-79128147 | None:intergenic | 45.0% |
| !! | CAATTTGTTAGGGTGCTGTG+AGG | - | chr8.1:79128095-79128114 | MS.gene30356:intron | 45.0% |
| !! | GGGTGTTGCTTTGAGAATTC+AGG | - | chr8.1:79128189-79128208 | MS.gene30356:intron | 45.0% |
| !! | AAAAAATATATTTAATTATG+TGG | - | chr8.1:79130488-79130507 | MS.gene30356:intron | 5.0% |
| !! | TTAAAAATTATAAATTTAAC+AGG | + | chr8.1:79128588-79128607 | None:intergenic | 5.0% |
| !!! | AAAATATTTTTGTTTTAAAA+AGG | - | chr8.1:79129158-79129177 | MS.gene30356:intron | 5.0% |
| !!! | AATTTTTTTTTGTTTTAAAA+AGG | + | chr8.1:79130609-79130628 | None:intergenic | 5.0% |
| !!! | TTAAAATTTTTTTTTTTACA+GGG | - | chr8.1:79130642-79130661 | MS.gene30356:intron | 5.0% |
| !!! | TTAAAATTTTTTTTTTTACA+GGG | + | chr8.1:79130661-79130642 | None:intergenic | 5.0% |
| !!! | TTTAAAATTTTTTTTTTTAC+AGG | - | chr8.1:79130641-79130660 | MS.gene30356:intron | 5.0% |
| !!! | TTTAAAATTTTTTTTTTTAC+AGG | + | chr8.1:79130660-79130641 | None:intergenic | 5.0% |
| ACCGACAGAGACATGGATAC+CGG | + | chr8.1:79128480-79128499 | None:intergenic | 50.0% | |
| ACTCGCCCAAATTACAGGGA+CGG | - | chr8.1:79130677-79130696 | MS.gene30356:intron | 50.0% | |
| ACTCGCCCAAATTACAGGGA+CGG | + | chr8.1:79130696-79130677 | None:intergenic | 50.0% | |
| ACTTCTAGCATGAGCTGGCA+TGG | - | chr8.1:79129192-79129211 | MS.gene30356:intron | 50.0% | |
| AGCAAAGAACAGGGTTGCTC+AGG | - | chr8.1:79131025-79131044 | MS.gene30356:intron | 50.0% | |
| AGCATGAGCTGGCATGGTTA+TGG | - | chr8.1:79129198-79129217 | MS.gene30356:intron | 50.0% | |
| ATCCGACATGTGTGGGCATT+GGG | - | chr8.1:79128380-79128399 | MS.gene30356:intron | 50.0% | |
| ATGCCAGCTCATGCTAGAAG+TGG | + | chr8.1:79129193-79129212 | None:intergenic | 50.0% | |
| GAACCAACGGGCAATGATGA+TGG | - | chr8.1:79131050-79131069 | MS.gene30356:intron | 50.0% | |
| GCCAACCGTCCCTGTAATTT+GGG | - | chr8.1:79129082-79129101 | MS.gene30356:intron | 50.0% | |
| GCCAACCGTCCCTGTAATTT+GGG | + | chr8.1:79129101-79129082 | None:intergenic | 50.0% | |
| TATCCGACATGTGTGGGCAT+TGG | - | chr8.1:79128379-79128398 | MS.gene30356:intron | 50.0% | |
| TCAGCAAAAAAGTGGGGCCA+GGG | - | chr8.1:79130582-79130601 | MS.gene30356:intron | 50.0% | |
| TCCGGTATCCATGTCTCTGT+CGG | - | chr8.1:79128476-79128495 | MS.gene30356:intron | 50.0% | |
| TGCCAACCGTCCCTGTAATT+TGG | - | chr8.1:79129081-79129100 | MS.gene30356:intron | 50.0% | |
| TGCCAACCGTCCCTGTAATT+TGG | + | chr8.1:79129100-79129081 | None:intergenic | 50.0% | |
| TGCCAGCTCATGCTAGAAGT+GGG | + | chr8.1:79129192-79129211 | None:intergenic | 50.0% | |
| TTGCTGACCAAGCATGGCTT+TGG | + | chr8.1:79130569-79130588 | None:intergenic | 50.0% | |
| ! | ACTGTGCAACTTTTGCCACG+TGG | - | chr8.1:79129238-79129257 | MS.gene30356:intron | 50.0% |
| ! | ACTGTGCAACTTTTGCCACG+TGG | + | chr8.1:79129257-79129238 | None:intergenic | 50.0% |
| ! | CGATGTGTAAGTGTCGTGTC+CGG | - | chr8.1:79128458-79128477 | MS.gene30356:intron | 50.0% |
| !! | TTAGGGTGCTGTGAGGGTTA+TGG | - | chr8.1:79128102-79128121 | MS.gene30356:intron | 50.0% |
| GCAACCCTGTTCTTTGCTGC+TGG | + | chr8.1:79131023-79131042 | None:intergenic | 55.0% | |
| GCAATGGGGGACGCTATGAA+AGG | - | chr8.1:79128686-79128705 | MS.gene30356:intron | 55.0% | |
| GCCAGCTCATGCTAGAAGTG+GGG | + | chr8.1:79129191-79129210 | None:intergenic | 55.0% | |
| GCCCAAATTACAGGGACGGT+TGG | - | chr8.1:79130681-79130700 | MS.gene30356:intron | 55.0% | |
| GCCCAAATTACAGGGACGGT+TGG | + | chr8.1:79130700-79130681 | None:intergenic | 55.0% | |
| GTCAGCAAAAAAGTGGGGCC+AGG | - | chr8.1:79130581-79130600 | MS.gene30356:intron | 55.0% | |
| TCATGCTAGAAGTGGGGCCA+GGG | + | chr8.1:79129185-79129204 | None:intergenic | 55.0% | |
| TGCCCAATGCCCACACATGT+CGG | + | chr8.1:79128385-79128404 | None:intergenic | 55.0% | |
| TGCGCCAGCAGCAAAGAACA+GGG | - | chr8.1:79131016-79131035 | MS.gene30356:intron | 55.0% | |
| TGCTGTGAGGGTTATGGCCA+AGG | - | chr8.1:79128108-79128127 | MS.gene30356:intron | 55.0% | |
| !! | ATGAGGCACCGACAGAGACA+TGG | + | chr8.1:79128487-79128506 | None:intergenic | 55.0% |
| CACAGTCAGCAACTGCCACG+TGG | - | chr8.1:79130543-79130562 | MS.gene30356:intron | 60.0% | |
| CACAGTCAGCAACTGCCACG+TGG | + | chr8.1:79130562-79130543 | None:intergenic | 60.0% | |
| CACGTGGCCAAAGCCATGCT+TGG | - | chr8.1:79130559-79130578 | MS.gene30356:intron | 60.0% | |
| CTCATGCTAGAAGTGGGGCC+AGG | + | chr8.1:79129186-79129205 | None:intergenic | 60.0% | |
| CTGCGCCAGCAGCAAAGAAC+AGG | - | chr8.1:79131015-79131034 | MS.gene30356:intron | 60.0% | |
| CTGGCATGGTTATGGCCACG+TGG | - | chr8.1:79129206-79129225 | MS.gene30356:intron | 60.0% | |
| GCCCCACTTCTAGCATGAGC+TGG | - | chr8.1:79129187-79129206 | MS.gene30356:intron | 60.0% | |
| GGCAGTAGAAAGACTCCCGC+AGG | - | chr8.1:79127089-79127108 | MS.gene30356:CDS | 60.0% | |
| GGTTGCTCAGGCCGAACCAA+CGG | - | chr8.1:79131037-79131056 | MS.gene30356:intron | 60.0% | |
| GTTCTTTGCTGCTGGCGCAG+CGG | + | chr8.1:79131015-79131034 | None:intergenic | 60.0% | |
| GTTGCTCAGGCCGAACCAAC+GGG | - | chr8.1:79131038-79131057 | MS.gene30356:intron | 60.0% | |
| !! | CAAGCATGGCTTTGGCCACG+TGG | + | chr8.1:79130561-79130580 | None:intergenic | 60.0% |
| !! | GCAGCGGTTGAGGTTGATGC+AGG | + | chr8.1:79130999-79131018 | None:intergenic | 60.0% |
| !! | TTTGCCACGTGGCGCTGACG+TGG | - | chr8.1:79129249-79129268 | MS.gene30356:intron | 65.0% |
| !! | TTTGCCACGTGGCGCTGACG+TGG | + | chr8.1:79129268-79129249 | None:intergenic | 65.0% |
| CATGCCACGTCAGCGCCACG+TGG | - | chr8.1:79130511-79130530 | MS.gene30356:intron | 70.0% | |
| CATGCCACGTCAGCGCCACG+TGG | + | chr8.1:79130530-79130511 | None:intergenic | 70.0% | |
| TGCTGCTGGCGCAGCGGTTG+AGG | + | chr8.1:79131009-79131028 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 79127074 | 79131124 | 79127074 | ID=MS.gene30356 |
| chr8.1 | mRNA | 79127074 | 79131124 | 79127074 | ID=MS.gene30356.t1;Parent=MS.gene30356 |
| chr8.1 | exon | 79131088 | 79131124 | 79131088 | ID=MS.gene30356.t1.exon1;Parent=MS.gene30356.t1 |
| chr8.1 | CDS | 79131088 | 79131124 | 79131088 | ID=cds.MS.gene30356.t1;Parent=MS.gene30356.t1 |
| chr8.1 | exon | 79130737 | 79130867 | 79130737 | ID=MS.gene30356.t1.exon2;Parent=MS.gene30356.t1 |
| chr8.1 | CDS | 79130737 | 79130867 | 79130737 | ID=cds.MS.gene30356.t1;Parent=MS.gene30356.t1 |
| chr8.1 | exon | 79129988 | 79130092 | 79129988 | ID=MS.gene30356.t1.exon3;Parent=MS.gene30356.t1 |
| chr8.1 | CDS | 79129988 | 79130092 | 79129988 | ID=cds.MS.gene30356.t1;Parent=MS.gene30356.t1 |
| chr8.1 | exon | 79129270 | 79129530 | 79129270 | ID=MS.gene30356.t1.exon4;Parent=MS.gene30356.t1 |
| chr8.1 | CDS | 79129270 | 79129530 | 79129270 | ID=cds.MS.gene30356.t1;Parent=MS.gene30356.t1 |
| chr8.1 | exon | 79127074 | 79127214 | 79127074 | ID=MS.gene30356.t1.exon5;Parent=MS.gene30356.t1 |
| chr8.1 | CDS | 79127074 | 79127214 | 79127074 | ID=cds.MS.gene30356.t1;Parent=MS.gene30356.t1 |
| Gene Sequence |
| Protein sequence |
