Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30683.t1 | XP_013452216.1 | 89.4 | 424 | 39 | 3 | 4 | 427 | 1 | 418 | 3.60E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30683.t1 | A0A072U8X8 | 89.4 | 424 | 39 | 3 | 4 | 427 | 1 | 418 | 2.6e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene30683 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene049488 | MS.gene30683 | 0.823203 | 1.57E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene30683 | 0.804229 | 2.39E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene30683 | 0.806472 | 8.09E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene30683 | 0.815476 | 9.07E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene30683 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene30683 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene30683 | 0.814351 | 1.61E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene30683 | 0.821379 | 4.17E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene30683 | -0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene052077 | MS.gene30683 | 0.816953 | 4.24E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene30683 | 0.831 | 2.14E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene30683 | 0.833313 | 5.73E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene30683 | 0.824017 | 1.01E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene30683 | 0.820222 | 7.69E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene30683 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene30683 | 0.832151 | 1.11E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene30683 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene30683 | 0.809591 | 1.75E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene30683 | 0.819223 | 1.30E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene30683 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene054918 | MS.gene30683 | 0.812092 | 5.04E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene30683 | 0.826876 | 2.13E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene30683 | 0.829288 | 5.60E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene30683 | 0.827608 | 1.42E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene30683 | 0.809576 | 1.77E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene30683 | 0.807216 | 5.63E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene30683 | 0.804992 | 1.66E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene30683 | 0.812955 | 3.27E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene30683 | 0.812421 | 4.28E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene30683 | -0.818307 | 2.10E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene30683 | 0.846683 | 1.86E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene30683 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene30683 | 0.814831 | 1.26E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene30683 | 0.810392 | 1.18E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene30683 | 0.8244 | 8.24E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene30683 | 0.819829 | 9.46E-53 | -1.69E-46 |
| MS.gene057825 | MS.gene30683 | 0.813188 | 2.90E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene30683 | 0.801794 | 7.61E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene30683 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene30683 | 0.862614 | 4.47E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene30683 | 0.833908 | 4.07E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene30683 | 0.821204 | 4.57E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene30683 | 0.831696 | 1.44E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene30683 | 0.834537 | 2.83E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene30683 | 0.823284 | 1.50E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene30683 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene30683 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene30683 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene059711 | MS.gene30683 | 0.810289 | 1.24E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene30683 | 0.802725 | 4.90E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene30683 | 0.811627 | 6.37E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene30683 | 0.807736 | 4.37E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene30683 | 0.803379 | 3.58E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene30683 | 0.851169 | 1.06E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene30683 | 0.834886 | 2.31E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30683.t1 | MTR_6g048350 | 86.574 | 432 | 57 | 1 | 3 | 434 | 1 | 431 | 0.0 | 776 |
| MS.gene30683.t1 | MTR_6g048310 | 89.176 | 425 | 40 | 3 | 4 | 428 | 1 | 419 | 0.0 | 758 |
| MS.gene30683.t1 | MTR_4g094548 | 82.028 | 434 | 75 | 3 | 3 | 434 | 1 | 433 | 0.0 | 741 |
| MS.gene30683.t1 | MTR_4g094570 | 79.812 | 426 | 85 | 1 | 3 | 428 | 1 | 425 | 0.0 | 726 |
| MS.gene30683.t1 | MTR_4g094555 | 80.047 | 426 | 84 | 1 | 3 | 428 | 1 | 425 | 0.0 | 718 |
| MS.gene30683.t1 | MTR_4g094550 | 79.157 | 427 | 87 | 2 | 3 | 428 | 1 | 426 | 0.0 | 708 |
| MS.gene30683.t1 | MTR_4g094562 | 78.404 | 426 | 83 | 1 | 3 | 428 | 1 | 417 | 0.0 | 702 |
| MS.gene30683.t1 | MTR_4g094560 | 78.241 | 432 | 83 | 2 | 3 | 434 | 1 | 421 | 0.0 | 694 |
| MS.gene30683.t1 | MTR_2g030470 | 63.403 | 429 | 145 | 5 | 1 | 425 | 2 | 422 | 0.0 | 569 |
| MS.gene30683.t1 | MTR_2g030470 | 61.631 | 417 | 149 | 4 | 1 | 414 | 414 | 822 | 0.0 | 549 |
| MS.gene30683.t1 | MTR_1g052640 | 61.575 | 419 | 149 | 4 | 3 | 417 | 1 | 411 | 0.0 | 555 |
| MS.gene30683.t1 | MTR_2g030460 | 60.000 | 420 | 156 | 4 | 3 | 418 | 1 | 412 | 0.0 | 549 |
| MS.gene30683.t1 | MTR_0083s0100 | 64.010 | 389 | 131 | 2 | 30 | 417 | 31 | 411 | 0.0 | 540 |
| MS.gene30683.t1 | MTR_2g030480 | 59.135 | 416 | 139 | 5 | 3 | 415 | 1 | 388 | 8.50e-180 | 507 |
| MS.gene30683.t1 | MTR_4g094565 | 59.535 | 430 | 92 | 5 | 3 | 432 | 1 | 348 | 1.17e-168 | 478 |
| MS.gene30683.t1 | MTR_4g094562 | 75.874 | 286 | 69 | 0 | 3 | 288 | 1 | 286 | 5.66e-167 | 472 |
| MS.gene30683.t1 | MTR_2g030460 | 58.187 | 342 | 131 | 4 | 3 | 340 | 1 | 334 | 2.26e-154 | 441 |
| MS.gene30683.t1 | MTR_1g052640 | 59.357 | 342 | 127 | 4 | 3 | 340 | 1 | 334 | 1.11e-151 | 434 |
| MS.gene30683.t1 | MTR_4g094565 | 70.629 | 286 | 56 | 1 | 3 | 288 | 1 | 258 | 6.06e-145 | 416 |
| MS.gene30683.t1 | MTR_8g039300 | 45.107 | 419 | 210 | 6 | 3 | 414 | 1 | 406 | 2.25e-136 | 398 |
| MS.gene30683.t1 | MTR_6g090090 | 45.498 | 422 | 200 | 7 | 1 | 415 | 25 | 423 | 2.39e-135 | 395 |
| MS.gene30683.t1 | MTR_6g089930 | 43.468 | 421 | 218 | 6 | 3 | 416 | 1 | 408 | 3.08e-134 | 392 |
| MS.gene30683.t1 | MTR_3g035040 | 43.943 | 421 | 216 | 7 | 3 | 416 | 1 | 408 | 3.61e-129 | 379 |
| MS.gene30683.t1 | MTR_1g052640 | 58.763 | 291 | 108 | 4 | 3 | 289 | 1 | 283 | 1.34e-125 | 366 |
| MS.gene30683.t1 | MTR_1g035220 | 43.112 | 392 | 181 | 7 | 3 | 386 | 1 | 358 | 1.38e-114 | 340 |
| MS.gene30683.t1 | MTR_1g062750 | 45.188 | 239 | 116 | 5 | 60 | 289 | 2 | 234 | 3.38e-74 | 233 |
| MS.gene30683.t1 | MTR_3g010150 | 58.537 | 41 | 17 | 0 | 127 | 167 | 14 | 54 | 5.71e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30683.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.27e-169 | 484 |
| MS.gene30683.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.27e-169 | 484 |
Find 0 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAATTAGTATTATATA+TGG | + | 42986:20526-20545 | MS.gene30683:intron | 10.0% |
| !! | AAGAAAAAAAGAAACATATA+TGG | + | 42986:20562-20581 | MS.gene30683:intron | 15.0% |
| !!! | TGTTTTAATTAACAAGAAAA+TGG | + | 42986:19871-19890 | MS.gene30683:intron | 15.0% |
| !! | AAAAAAAGAAACATATATGG+TGG | + | 42986:20565-20584 | MS.gene30683:intron | 20.0% |
| !! | AAACTATCAAATGATTCAAA+AGG | + | 42986:19002-19021 | MS.gene30683:CDS | 20.0% |
| !! | AATTTATTTATAACTGATCC+AGG | - | 42986:18339-18358 | None:intergenic | 20.0% |
| !! | AATTTGCAATAGTTACATAT+AGG | + | 42986:19587-19606 | MS.gene30683:intron | 20.0% |
| !! | ATTAAAACATTTATTACCCT+CGG | - | 42986:19860-19879 | None:intergenic | 20.0% |
| !!! | AAATAAAATCAGCAGTTTTT+TGG | + | 42986:18292-18311 | MS.gene30683:CDS | 20.0% |
| !!! | TATGATATTGATTTTCCAAA+AGG | + | 42986:18363-18382 | MS.gene30683:CDS | 20.0% |
| !!! | TTTGTTTAAAACTGTAATCA+TGG | + | 42986:19634-19653 | MS.gene30683:intron | 20.0% |
| ! | AATATGTGAATTATACATGG+AGG | + | 42986:20620-20639 | MS.gene30683:CDS | 25.0% |
| ! | AATGTAACAGTGGATAAATA+CGG | + | 42986:18792-18811 | MS.gene30683:CDS | 25.0% |
| ! | AGCAATATGTGAATTATACA+TGG | + | 42986:20617-20636 | MS.gene30683:CDS | 25.0% |
| ! | CATTAGACCAATAGTAAATA+AGG | + | 42986:20044-20063 | MS.gene30683:intron | 25.0% |
| ! | TAAATCCAAAATATCGAGTT+TGG | + | 42986:19193-19212 | MS.gene30683:intron | 25.0% |
| ! | TTAAAACTGTAATCATGGAA+GGG | + | 42986:19639-19658 | MS.gene30683:intron | 25.0% |
| !! | AAAATCATGATTTTGTGCTA+GGG | + | 42986:19779-19798 | MS.gene30683:intron | 25.0% |
| !! | GATTGATTGGAATGATTTTA+TGG | + | 42986:18938-18957 | MS.gene30683:CDS | 25.0% |
| !! | TGTGAATTATGTATGTTTTC+AGG | + | 42986:20218-20237 | MS.gene30683:intron | 25.0% |
| !! | TTAATCCAAACTCGATATTT+TGG | - | 42986:19201-19220 | None:intergenic | 25.0% |
| !! | TTTAAAACTGTAATCATGGA+AGG | + | 42986:19638-19657 | MS.gene30683:intron | 25.0% |
| !!! | AAACTAGCCTTATTTACTAT+TGG | - | 42986:20054-20073 | None:intergenic | 25.0% |
| !!! | AATTATGTATGTTTTCAGGA+TGG | + | 42986:20222-20241 | MS.gene30683:intron | 25.0% |
| !!! | ATTATGTATGTTTTCAGGAT+GGG | + | 42986:20223-20242 | MS.gene30683:intron | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTA+AGG | - | 42986:20133-20152 | None:intergenic | 25.0% |
| AACAAACCTCCTTTATAATC+TGG | - | 42986:18831-18850 | None:intergenic | 30.0% | |
| ACCTAAAATACACCATGAAA+TGG | + | 42986:18916-18935 | MS.gene30683:CDS | 30.0% | |
| ACGAAACATATATCCATCAT+TGG | + | 42986:18451-18470 | MS.gene30683:CDS | 30.0% | |
| ACTCTAATTATGTTCTCGTA+AGG | + | 42986:18544-18563 | MS.gene30683:CDS | 30.0% | |
| AGTGATTGTTGGATCAAAAT+CGG | + | 42986:19136-19155 | MS.gene30683:intron | 30.0% | |
| ATACAGAAAATGATAGCCAT+AGG | + | 42986:18511-18530 | MS.gene30683:CDS | 30.0% | |
| ATCATTTGAACTTGATCCAA+CGG | + | 42986:19284-19303 | MS.gene30683:intron | 30.0% | |
| ATTCCAATCAATCCATTTCA+TGG | - | 42986:18931-18950 | None:intergenic | 30.0% | |
| CGAAACATATATCCATCATT+GGG | + | 42986:18452-18471 | MS.gene30683:CDS | 30.0% | |
| GAACTTAGATCATGATTGTA+AGG | + | 42986:19028-19047 | MS.gene30683:CDS | 30.0% | |
| GATATTCTTCCACAGTATTT+CGG | + | 42986:18588-18607 | MS.gene30683:CDS | 30.0% | |
| TAAATCCAAAATACCGAGTT+TGG | - | 42986:19259-19278 | None:intergenic | 30.0% | |
| TAGAAGCTAATATCTTGAGT+CGG | - | 42986:19727-19746 | None:intergenic | 30.0% | |
| TAGAATGTCTCAATTGTTGT+TGG | - | 42986:20467-20486 | None:intergenic | 30.0% | |
| TCAATTATGTATGCCTTAAC+AGG | - | 42986:18966-18985 | None:intergenic | 30.0% | |
| TCATTTCCATTTCCATAACT+TGG | - | 42986:20270-20289 | None:intergenic | 30.0% | |
| TTACCTATCTCTATACCAAA+AGG | - | 42986:18657-18676 | None:intergenic | 30.0% | |
| TTCATCAAGAATCATGTTGT+TGG | + | 42986:19059-19078 | MS.gene30683:intron | 30.0% | |
| TTCTCAAAAGAACTTGAGAA+TGG | - | 42986:18261-18280 | None:intergenic | 30.0% | |
| ! | AAATACCGAGTTTGGAATTT+AGG | - | 42986:19251-19270 | None:intergenic | 30.0% |
| ! | AAATTCCAAACTCGGTATTT+TGG | + | 42986:19251-19270 | MS.gene30683:intron | 30.0% |
| ! | AATTAATTGGAGGGTACAAT+TGG | - | 42986:20000-20019 | None:intergenic | 30.0% |
| ! | AGTGAAAGTACAAAATCTCT+AGG | - | 42986:18210-18229 | None:intergenic | 30.0% |
| ! | CAAAATCATGATTTTGTGCT+AGG | + | 42986:19778-19797 | MS.gene30683:intron | 30.0% |
| ! | CTAGCACAAAATCATGATTT+TGG | - | 42986:19780-19799 | None:intergenic | 30.0% |
| ! | TCCATTTCATGGTGTATTTT+AGG | - | 42986:18920-18939 | None:intergenic | 30.0% |
| ! | TGAGCTTTATAATGTAACAG+TGG | + | 42986:18782-18801 | MS.gene30683:CDS | 30.0% |
| !! | ATCATGATTTTGGTCTGAAT+TGG | - | 42986:19770-19789 | None:intergenic | 30.0% |
| !! | CTAATGCTTTGAAGAAAGTA+GGG | - | 42986:20030-20049 | None:intergenic | 30.0% |
| !! | CTCGGTATTTTGGATTTAAA+AGG | + | 42986:19261-19280 | MS.gene30683:intron | 30.0% |
| !! | TCATGATTTTGGTCTGAATT+GGG | - | 42986:19769-19788 | None:intergenic | 30.0% |
| !! | TCTAATGCTTTGAAGAAAGT+AGG | - | 42986:20031-20050 | None:intergenic | 30.0% |
| !!! | TACTCGTTCTTCGTTTTTTA+TGG | + | 42986:20485-20504 | MS.gene30683:intron | 30.0% |
| !!! | TTTTGTTTTTTTTCAGCCGA+GGG | + | 42986:19841-19860 | MS.gene30683:intron | 30.0% |
| ACACCAGTTCATTTCTTTGT+TGG | + | 42986:19367-19386 | MS.gene30683:intron | 35.0% | |
| ACGATCCTAAATTCCAAACT+CGG | + | 42986:19243-19262 | MS.gene30683:intron | 35.0% | |
| AGAAGCTAATATCTTGAGTC+GGG | - | 42986:19726-19745 | None:intergenic | 35.0% | |
| ATAAATACGGAAGGCCTTTA+AGG | + | 42986:18805-18824 | MS.gene30683:CDS | 35.0% | |
| ATCAAGAATCATGTTGTTGG+TGG | + | 42986:19062-19081 | MS.gene30683:intron | 35.0% | |
| ATCTCTATACCAAAAGGATC+CGG | - | 42986:18651-18670 | None:intergenic | 35.0% | |
| ATGATTGTGTTCATGTGAAG+AGG | + | 42986:19472-19491 | MS.gene30683:CDS | 35.0% | |
| CACCAGTTCATTTCTTTGTT+GGG | + | 42986:19368-19387 | MS.gene30683:intron | 35.0% | |
| CTCGGCTGAAAAAAAACAAA+AGG | - | 42986:19842-19861 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | + | 42986:19558-19577 | MS.gene30683:CDS | 35.0% | |
| GGTACACTCAATTAATTGGA+GGG | - | 42986:20009-20028 | None:intergenic | 35.0% | |
| GGTTCTGTCAAGATAAATGA+TGG | + | 42986:20345-20364 | MS.gene30683:CDS | 35.0% | |
| GTAGGGTACACTCAATTAAT+TGG | - | 42986:20013-20032 | None:intergenic | 35.0% | |
| TAACAGTGGATAAATACGGA+AGG | + | 42986:18796-18815 | MS.gene30683:CDS | 35.0% | |
| TACCCAACAAAGAAATGAAC+TGG | - | 42986:19373-19392 | None:intergenic | 35.0% | |
| TATAAGTGCAGTTTCATCGA+TGG | + | 42986:20588-20607 | MS.gene30683:intron | 35.0% | |
| TATGGAAATGGAAATGAAGC+AGG | + | 42986:20273-20292 | MS.gene30683:CDS | 35.0% | |
| TCATTTATCTTGACAGAACC+TGG | - | 42986:20345-20364 | None:intergenic | 35.0% | |
| TCTGTACCAAGTTATGGAAA+TGG | + | 42986:20261-20280 | MS.gene30683:CDS | 35.0% | |
| TGGATATATGTTTCGTGCAA+CGG | - | 42986:18447-18466 | None:intergenic | 35.0% | |
| TGTTCTTCTGTACCAAGTTA+TGG | + | 42986:20255-20274 | MS.gene30683:CDS | 35.0% | |
| TTAAGGCCAGATTATAAAGG+AGG | + | 42986:18822-18841 | MS.gene30683:CDS | 35.0% | |
| TTTAGGTAGAGACTTCTCTT+TGG | - | 42986:18903-18922 | None:intergenic | 35.0% | |
| ! | AATCATGTTGTTGGTGGAAA+TGG | + | 42986:19068-19087 | MS.gene30683:intron | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | 42986:20422-20441 | MS.gene30683:CDS | 35.0% |
| ! | ACGACACTCATTTTAAACAG+AGG | + | 42986:20136-20155 | MS.gene30683:intron | 35.0% |
| ! | CGACACTCATTTTAAACAGA+GGG | + | 42986:20137-20156 | MS.gene30683:intron | 35.0% |
| ! | GAGAGTTTTACCAATCATTG+TGG | + | 42986:19695-19714 | MS.gene30683:intron | 35.0% |
| ! | GATCCTTTTGGTATAGAGAT+AGG | + | 42986:18651-18670 | MS.gene30683:CDS | 35.0% |
| ! | GTCTCAATTGTTGTTGGTAT+GGG | - | 42986:20461-20480 | None:intergenic | 35.0% |
| ! | TGATACACAATGCAAGTTGA+AGG | + | 42986:18863-18882 | MS.gene30683:CDS | 35.0% |
| ! | TGATTTTATGGTGCCTGTTA+AGG | + | 42986:18950-18969 | MS.gene30683:CDS | 35.0% |
| ! | TGTCTCAATTGTTGTTGGTA+TGG | - | 42986:20462-20481 | None:intergenic | 35.0% |
| ! | TTGATTGCTACATGACCTTT+TGG | - | 42986:18381-18400 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | + | 42986:18876-18895 | MS.gene30683:CDS | 35.0% |
| !! | ACACCATGAAATGGATTGAT+TGG | + | 42986:18925-18944 | MS.gene30683:CDS | 35.0% |
| !! | CCTTTAAGGCCAGATTATAA+AGG | + | 42986:18819-18838 | MS.gene30683:CDS | 35.0% |
| !! | CCTTTATAATCTGGCCTTAA+AGG | - | 42986:18822-18841 | None:intergenic | 35.0% |
| !! | TCTACTTGTTATCCTAAACC+AGG | + | 42986:20324-20343 | MS.gene30683:CDS | 35.0% |
| !!! | CTTTTGTTTTTTTTCAGCCG+AGG | + | 42986:19840-19859 | MS.gene30683:intron | 35.0% |
| !!! | TAGAGTTTTGAAGCATCCTA+TGG | - | 42986:18530-18549 | None:intergenic | 35.0% |
| AATCCTGCAGAAATTCCAGA+AGG | + | 42986:18675-18694 | MS.gene30683:CDS | 40.0% | |
| ACATAACCACCAGTTTGTAG+TGG | - | 42986:19507-19526 | None:intergenic | 40.0% | |
| ACCAAAAGGATCCGGAATAT+CGG | - | 42986:18643-18662 | None:intergenic | 40.0% | |
| AGAAATTCCAGAAGGGTTTG+AGG | + | 42986:18683-18702 | MS.gene30683:CDS | 40.0% | |
| AGTTTGGATTAAGTGACCGT+TGG | + | 42986:19209-19228 | MS.gene30683:intron | 40.0% | |
| ATCCTGCAGAAATTCCAGAA+GGG | + | 42986:18676-18695 | MS.gene30683:CDS | 40.0% | |
| ATCGACATATCAATGACCGT+TGG | - | 42986:19303-19322 | None:intergenic | 40.0% | |
| ATCGTCTGAACTTGATCCAA+CGG | - | 42986:19228-19247 | None:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | - | 42986:20339-20358 | None:intergenic | 40.0% | |
| ATCTTGCAACAACCCAATGA+TGG | - | 42986:18467-18486 | None:intergenic | 40.0% | |
| CACAATCATTTCCCTCATCA+TGG | - | 42986:19461-19480 | None:intergenic | 40.0% | |
| CATAACCACCAGTTTGTAGT+GGG | - | 42986:19506-19525 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | + | 42986:19543-19562 | MS.gene30683:CDS | 40.0% | |
| GGGTACACTCAATTAATTGG+AGG | - | 42986:20010-20029 | None:intergenic | 40.0% | |
| GTGAATGGATCAGTGATTGT+TGG | + | 42986:19125-19144 | MS.gene30683:intron | 40.0% | |
| TATGTTCTCGTAAGGAACGA+TGG | + | 42986:18552-18571 | MS.gene30683:CDS | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | + | 42986:20281-20300 | MS.gene30683:CDS | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | + | 42986:19563-19582 | MS.gene30683:CDS | 40.0% | |
| TTTGTGCTAGGGTTCAAACT+TGG | + | 42986:19790-19809 | MS.gene30683:intron | 40.0% | |
| ! | ACACAATGCAAGTTGAAGGA+AGG | + | 42986:18867-18886 | MS.gene30683:CDS | 40.0% |
| ! | AGGTCCTTGCTCAAATTTTG+GGG | - | 42986:18319-18338 | None:intergenic | 40.0% |
| ! | CAGGTCCTTGCTCAAATTTT+GGG | - | 42986:18320-18339 | None:intergenic | 40.0% |
| ! | GAAATGGATTCCGTGTAGTT+GGG | + | 42986:19084-19103 | MS.gene30683:intron | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | + | 42986:18875-18894 | MS.gene30683:CDS | 40.0% |
| AAAGGATCCGGAATATCGGT+CGG | - | 42986:18639-18658 | None:intergenic | 45.0% | |
| AATGAAGCAGGAAATGAGGC+AGG | + | 42986:20285-20304 | MS.gene30683:CDS | 45.0% | |
| AATGAGGCAGGGTACATTGT+AGG | + | 42986:20297-20316 | MS.gene30683:CDS | 45.0% | |
| ACAAGTCTCCCACTACAAAC+TGG | + | 42986:19495-19514 | MS.gene30683:CDS | 45.0% | |
| ACTGTGGAAGAATATCTGCC+TGG | - | 42986:18584-18603 | None:intergenic | 45.0% | |
| AGCTAATATCTTGAGTCGGG+TGG | - | 42986:19723-19742 | None:intergenic | 45.0% | |
| ATGAAGCAGGAAATGAGGCA+GGG | + | 42986:20286-20305 | MS.gene30683:CDS | 45.0% | |
| ATTCATGCTATCGATACGCG+TGG | + | 42986:18723-18742 | MS.gene30683:CDS | 45.0% | |
| CCAAAATTTGAGCAAGGACC+TGG | + | 42986:18318-18337 | MS.gene30683:CDS | 45.0% | |
| GCTGTTGCTCATCAACATTC+AGG | + | 42986:19534-19553 | MS.gene30683:CDS | 45.0% | |
| GTGGCGTAGAGGATAAGTTA+GGG | + | 42986:18742-18761 | MS.gene30683:CDS | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | + | 42986:19537-19556 | MS.gene30683:CDS | 45.0% | |
| TGGTCCCCAAAATTTGAGCA+AGG | + | 42986:18312-18331 | MS.gene30683:CDS | 45.0% | |
| TGTAGCACAGACCATGATGA+GGG | + | 42986:19447-19466 | MS.gene30683:CDS | 45.0% | |
| TTCCTCGTGTTTCAGATCCA+AGG | - | 42986:18614-18633 | None:intergenic | 45.0% | |
| TTGTAGCACAGACCATGATG+AGG | + | 42986:19446-19465 | MS.gene30683:CDS | 45.0% | |
| ! | AAAGAGCACGCTGGAGTAAT+GGG | + | 42986:20405-20424 | MS.gene30683:CDS | 45.0% |
| ! | ACCGATATTCCGGATCCTTT+TGG | + | 42986:18639-18658 | MS.gene30683:CDS | 45.0% |
| ! | CCAGGTCCTTGCTCAAATTT+TGG | - | 42986:18321-18340 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGTTGATGAAGC+TGG | + | 42986:18411-18430 | MS.gene30683:CDS | 45.0% |
| ! | GGAAATGGATTCCGTGTAGT+TGG | + | 42986:19083-19102 | MS.gene30683:intron | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | 42986:20425-20444 | MS.gene30683:CDS | 45.0% |
| !! | AACCCTTCTGGAATTTCTGC+AGG | - | 42986:18681-18700 | None:intergenic | 45.0% |
| AAGGAACGATGGCATATGCC+AGG | + | 42986:18563-18582 | MS.gene30683:CDS | 50.0% | |
| AGGAACACCGACCGATATTC+CGG | + | 42986:18629-18648 | MS.gene30683:CDS | 50.0% | |
| AGTCTCCCACTACAAACTGG+TGG | + | 42986:19498-19517 | MS.gene30683:CDS | 50.0% | |
| CACTTCTCCTCAAACCCTTC+TGG | - | 42986:18693-18712 | None:intergenic | 50.0% | |
| CAGAAGGGTTTGAGGAGAAG+TGG | + | 42986:18691-18710 | MS.gene30683:CDS | 50.0% | |
| CATTACTCCAGCGTGCTCTT+TGG | - | 42986:20406-20425 | None:intergenic | 50.0% | |
| CCATTCACTGCGTGAATGCA+GGG | - | 42986:19113-19132 | None:intergenic | 50.0% | |
| CGTGGCGTAGAGGATAAGTT+AGG | + | 42986:18741-18760 | MS.gene30683:CDS | 50.0% | |
| CTTCCACAGTATTTCGGCCT+TGG | + | 42986:18594-18613 | MS.gene30683:CDS | 50.0% | |
| GATCCAAGGCCGAAATACTG+TGG | - | 42986:18600-18619 | None:intergenic | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | 42986:20440-20459 | None:intergenic | 50.0% | |
| TCCATTCACTGCGTGAATGC+AGG | - | 42986:19114-19133 | None:intergenic | 50.0% | |
| TCGGGTGGAACCACAATGAT+TGG | - | 42986:19708-19727 | None:intergenic | 50.0% | |
| ! | AACAACACCAAAGAGCACGC+TGG | + | 42986:20396-20415 | MS.gene30683:CDS | 50.0% |
| ! | CAAAGAGCACGCTGGAGTAA+TGG | + | 42986:20404-20423 | MS.gene30683:CDS | 50.0% |
| CCCTGCATTCACGCAGTGAA+TGG | + | 42986:19110-19129 | MS.gene30683:intron | 55.0% | |
| GCTTCTACAGTTGCGCGTAG+AGG | + | 42986:19740-19759 | MS.gene30683:intron | 55.0% | |
| TATCGATACGCGTGGCGTAG+AGG | + | 42986:18731-18750 | MS.gene30683:CDS | 55.0% | |
| TGCAGGGTCTCCCAACTACA+CGG | - | 42986:19097-19116 | None:intergenic | 55.0% | |
| ! | GGCCTTGGATCTGAAACACG+AGG | + | 42986:18609-18628 | MS.gene30683:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42986 | gene | 18189 | 20647 | 18189 | ID=MS.gene30683 |
| 42986 | mRNA | 18189 | 20647 | 18189 | ID=MS.gene30683.t1;Parent=MS.gene30683 |
| 42986 | exon | 18189 | 19049 | 18189 | ID=MS.gene30683.t1.exon1;Parent=MS.gene30683.t1 |
| 42986 | CDS | 18189 | 19049 | 18189 | ID=cds.MS.gene30683.t1;Parent=MS.gene30683.t1 |
| 42986 | exon | 19426 | 19584 | 19426 | ID=MS.gene30683.t1.exon2;Parent=MS.gene30683.t1 |
| 42986 | CDS | 19426 | 19584 | 19426 | ID=cds.MS.gene30683.t1;Parent=MS.gene30683.t1 |
| 42986 | exon | 20240 | 20496 | 20240 | ID=MS.gene30683.t1.exon3;Parent=MS.gene30683.t1 |
| 42986 | CDS | 20240 | 20496 | 20240 | ID=cds.MS.gene30683.t1;Parent=MS.gene30683.t1 |
| 42986 | exon | 20599 | 20647 | 20599 | ID=MS.gene30683.t1.exon4;Parent=MS.gene30683.t1 |
| 42986 | CDS | 20599 | 20647 | 20599 | ID=cds.MS.gene30683.t1;Parent=MS.gene30683.t1 |
| Gene Sequence |
| Protein sequence |
