Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30686.t1 | XP_013452216.1 | 89.4 | 424 | 39 | 3 | 4 | 427 | 1 | 418 | 3.60E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30686.t1 | A0A072U8X8 | 89.4 | 424 | 39 | 3 | 4 | 427 | 1 | 418 | 2.6e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene30686 | 0.814978 | 1.17E-51 | -1.69E-46 |
| MS.gene049488 | MS.gene30686 | 0.824996 | 5.96E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene30686 | 0.803489 | 3.40E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene30686 | 0.806447 | 8.19E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene30686 | 0.813713 | 2.23E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene30686 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene30686 | 0.810964 | 8.87E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene30686 | 0.815195 | 1.05E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene30686 | 0.820569 | 6.40E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene30686 | -0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene30686 | 0.815178 | 1.06E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene30686 | 0.831025 | 2.11E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene30686 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene30686 | 0.822118 | 2.81E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene30686 | 0.820754 | 5.80E-53 | -1.69E-46 |
| MS.gene053758 | MS.gene30686 | 0.811483 | 6.84E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene30686 | 0.830159 | 3.44E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene30686 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene30686 | 0.80843 | 3.11E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene30686 | 0.816886 | 4.39E-52 | -1.69E-46 |
| MS.gene054918 | MS.gene30686 | 0.811489 | 6.82E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene30686 | 0.827137 | 1.85E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene30686 | 0.828837 | 7.20E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene30686 | 0.827034 | 1.95E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene30686 | 0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene30686 | 0.806326 | 8.68E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene30686 | 0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene30686 | 0.815033 | 1.14E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene30686 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene30686 | -0.816346 | 5.80E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene30686 | 0.845713 | 3.42E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene30686 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene057449 | MS.gene30686 | 0.813614 | 2.34E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene30686 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene30686 | 0.823939 | 1.06E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene30686 | 0.819331 | 1.23E-52 | -1.69E-46 |
| MS.gene057825 | MS.gene30686 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene30686 | 0.805069 | 1.59E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene30686 | 0.862601 | 4.51E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene30686 | 0.833337 | 5.65E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene30686 | 0.820239 | 7.62E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene30686 | 0.831772 | 1.38E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene30686 | 0.833439 | 5.33E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene30686 | 0.822048 | 2.92E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene30686 | 0.809412 | 1.92E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene30686 | 0.804553 | 2.04E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene30686 | 0.811916 | 5.51E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene30686 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene059894 | MS.gene30686 | 0.809187 | 2.14E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene30686 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene30686 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene30686 | 0.849069 | 4.10E-60 | -1.69E-46 |
| MS.gene061159 | MS.gene30686 | 0.8337 | 4.59E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30686.t1 | MTR_6g048350 | 86.574 | 432 | 57 | 1 | 3 | 434 | 1 | 431 | 0.0 | 776 |
| MS.gene30686.t1 | MTR_6g048310 | 89.176 | 425 | 40 | 3 | 4 | 428 | 1 | 419 | 0.0 | 758 |
| MS.gene30686.t1 | MTR_4g094548 | 82.028 | 434 | 75 | 3 | 3 | 434 | 1 | 433 | 0.0 | 741 |
| MS.gene30686.t1 | MTR_4g094570 | 79.812 | 426 | 85 | 1 | 3 | 428 | 1 | 425 | 0.0 | 726 |
| MS.gene30686.t1 | MTR_4g094555 | 80.047 | 426 | 84 | 1 | 3 | 428 | 1 | 425 | 0.0 | 718 |
| MS.gene30686.t1 | MTR_4g094550 | 79.157 | 427 | 87 | 2 | 3 | 428 | 1 | 426 | 0.0 | 708 |
| MS.gene30686.t1 | MTR_4g094562 | 78.404 | 426 | 83 | 1 | 3 | 428 | 1 | 417 | 0.0 | 702 |
| MS.gene30686.t1 | MTR_4g094560 | 78.241 | 432 | 83 | 2 | 3 | 434 | 1 | 421 | 0.0 | 694 |
| MS.gene30686.t1 | MTR_2g030470 | 63.403 | 429 | 145 | 5 | 1 | 425 | 2 | 422 | 0.0 | 569 |
| MS.gene30686.t1 | MTR_2g030470 | 61.631 | 417 | 149 | 4 | 1 | 414 | 414 | 822 | 0.0 | 549 |
| MS.gene30686.t1 | MTR_1g052640 | 61.575 | 419 | 149 | 4 | 3 | 417 | 1 | 411 | 0.0 | 555 |
| MS.gene30686.t1 | MTR_2g030460 | 60.000 | 420 | 156 | 4 | 3 | 418 | 1 | 412 | 0.0 | 549 |
| MS.gene30686.t1 | MTR_0083s0100 | 64.010 | 389 | 131 | 2 | 30 | 417 | 31 | 411 | 0.0 | 540 |
| MS.gene30686.t1 | MTR_2g030480 | 59.135 | 416 | 139 | 5 | 3 | 415 | 1 | 388 | 8.50e-180 | 507 |
| MS.gene30686.t1 | MTR_4g094565 | 59.535 | 430 | 92 | 5 | 3 | 432 | 1 | 348 | 1.17e-168 | 478 |
| MS.gene30686.t1 | MTR_4g094562 | 75.874 | 286 | 69 | 0 | 3 | 288 | 1 | 286 | 5.66e-167 | 472 |
| MS.gene30686.t1 | MTR_2g030460 | 58.187 | 342 | 131 | 4 | 3 | 340 | 1 | 334 | 2.26e-154 | 441 |
| MS.gene30686.t1 | MTR_1g052640 | 59.357 | 342 | 127 | 4 | 3 | 340 | 1 | 334 | 1.11e-151 | 434 |
| MS.gene30686.t1 | MTR_4g094565 | 70.629 | 286 | 56 | 1 | 3 | 288 | 1 | 258 | 6.06e-145 | 416 |
| MS.gene30686.t1 | MTR_8g039300 | 45.107 | 419 | 210 | 6 | 3 | 414 | 1 | 406 | 2.25e-136 | 398 |
| MS.gene30686.t1 | MTR_6g090090 | 45.498 | 422 | 200 | 7 | 1 | 415 | 25 | 423 | 2.39e-135 | 395 |
| MS.gene30686.t1 | MTR_6g089930 | 43.468 | 421 | 218 | 6 | 3 | 416 | 1 | 408 | 3.08e-134 | 392 |
| MS.gene30686.t1 | MTR_3g035040 | 43.943 | 421 | 216 | 7 | 3 | 416 | 1 | 408 | 3.61e-129 | 379 |
| MS.gene30686.t1 | MTR_1g052640 | 58.763 | 291 | 108 | 4 | 3 | 289 | 1 | 283 | 1.34e-125 | 366 |
| MS.gene30686.t1 | MTR_1g035220 | 43.112 | 392 | 181 | 7 | 3 | 386 | 1 | 358 | 1.38e-114 | 340 |
| MS.gene30686.t1 | MTR_1g062750 | 45.188 | 239 | 116 | 5 | 60 | 289 | 2 | 234 | 3.38e-74 | 233 |
| MS.gene30686.t1 | MTR_3g010150 | 58.537 | 41 | 17 | 0 | 127 | 167 | 14 | 54 | 5.71e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30686.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.27e-169 | 484 |
| MS.gene30686.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 8 | 414 | 8 | 419 | 2.27e-169 | 484 |
Find 0 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAATTAGTATTATATA+TGG | + | 42982:8670-8689 | MS.gene30686:intron | 10.0% |
| !! | AAGAAAAAAAGAAACATATA+TGG | + | 42982:8706-8725 | MS.gene30686:intron | 15.0% |
| !!! | TGTTTTAATTAACAAGAAAA+TGG | + | 42982:8015-8034 | MS.gene30686:intron | 15.0% |
| !! | AAAAAAAGAAACATATATGG+TGG | + | 42982:8709-8728 | MS.gene30686:intron | 20.0% |
| !! | AAACTATCAAATGATTCAAA+AGG | + | 42982:7146-7165 | MS.gene30686:CDS | 20.0% |
| !! | AATTTATTTATAACTGATCC+AGG | - | 42982:6483-6502 | None:intergenic | 20.0% |
| !! | AATTTGCAATAGTTACATAT+AGG | + | 42982:7731-7750 | MS.gene30686:intron | 20.0% |
| !! | ATTAAAACATTTATTACCCT+CGG | - | 42982:8004-8023 | None:intergenic | 20.0% |
| !!! | AAATAAAATCAGCAGTTTTT+TGG | + | 42982:6436-6455 | MS.gene30686:CDS | 20.0% |
| !!! | TATGATATTGATTTTCCAAA+AGG | + | 42982:6507-6526 | MS.gene30686:CDS | 20.0% |
| !!! | TTTGTTTAAAACTGTAATCA+TGG | + | 42982:7778-7797 | MS.gene30686:intron | 20.0% |
| ! | AATATGTGAATTATACATGG+AGG | + | 42982:8764-8783 | MS.gene30686:CDS | 25.0% |
| ! | AATGTAACAGTGGATAAATA+CGG | + | 42982:6936-6955 | MS.gene30686:CDS | 25.0% |
| ! | AGCAATATGTGAATTATACA+TGG | + | 42982:8761-8780 | MS.gene30686:CDS | 25.0% |
| ! | CATTAGACCAATAGTAAATA+AGG | + | 42982:8188-8207 | MS.gene30686:intron | 25.0% |
| ! | TAAATCCAAAATATCGAGTT+TGG | + | 42982:7337-7356 | MS.gene30686:intron | 25.0% |
| ! | TTAAAACTGTAATCATGGAA+GGG | + | 42982:7783-7802 | MS.gene30686:intron | 25.0% |
| !! | AAAATCATGATTTTGTGCTA+GGG | + | 42982:7923-7942 | MS.gene30686:intron | 25.0% |
| !! | GATTGATTGGAATGATTTTA+TGG | + | 42982:7082-7101 | MS.gene30686:CDS | 25.0% |
| !! | TGTGAATTATGTATGTTTTC+AGG | + | 42982:8362-8381 | MS.gene30686:intron | 25.0% |
| !! | TTAATCCAAACTCGATATTT+TGG | - | 42982:7345-7364 | None:intergenic | 25.0% |
| !! | TTTAAAACTGTAATCATGGA+AGG | + | 42982:7782-7801 | MS.gene30686:intron | 25.0% |
| !!! | AAACTAGCCTTATTTACTAT+TGG | - | 42982:8198-8217 | None:intergenic | 25.0% |
| !!! | AATTATGTATGTTTTCAGGA+TGG | + | 42982:8366-8385 | MS.gene30686:intron | 25.0% |
| !!! | ATTATGTATGTTTTCAGGAT+GGG | + | 42982:8367-8386 | MS.gene30686:intron | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTA+AGG | - | 42982:8277-8296 | None:intergenic | 25.0% |
| AACAAACCTCCTTTATAATC+TGG | - | 42982:6975-6994 | None:intergenic | 30.0% | |
| ACCTAAAATACACCATGAAA+TGG | + | 42982:7060-7079 | MS.gene30686:CDS | 30.0% | |
| ACGAAACATATATCCATCAT+TGG | + | 42982:6595-6614 | MS.gene30686:CDS | 30.0% | |
| ACTCTAATTATGTTCTCGTA+AGG | + | 42982:6688-6707 | MS.gene30686:CDS | 30.0% | |
| AGTGATTGTTGGATCAAAAT+CGG | + | 42982:7280-7299 | MS.gene30686:intron | 30.0% | |
| ATACAGAAAATGATAGCCAT+AGG | + | 42982:6655-6674 | MS.gene30686:CDS | 30.0% | |
| ATCATTTGAACTTGATCCAA+CGG | + | 42982:7428-7447 | MS.gene30686:intron | 30.0% | |
| ATTCCAATCAATCCATTTCA+TGG | - | 42982:7075-7094 | None:intergenic | 30.0% | |
| CGAAACATATATCCATCATT+GGG | + | 42982:6596-6615 | MS.gene30686:CDS | 30.0% | |
| GAACTTAGATCATGATTGTA+AGG | + | 42982:7172-7191 | MS.gene30686:CDS | 30.0% | |
| GATATTCTTCCACAGTATTT+CGG | + | 42982:6732-6751 | MS.gene30686:CDS | 30.0% | |
| TAAATCCAAAATACCGAGTT+TGG | - | 42982:7403-7422 | None:intergenic | 30.0% | |
| TAGAAGCTAATATCTTGAGT+CGG | - | 42982:7871-7890 | None:intergenic | 30.0% | |
| TAGAATGTCTCAATTGTTGT+TGG | - | 42982:8611-8630 | None:intergenic | 30.0% | |
| TCAATTATGTATGCCTTAAC+AGG | - | 42982:7110-7129 | None:intergenic | 30.0% | |
| TCATTTCCATTTCCATAACT+TGG | - | 42982:8414-8433 | None:intergenic | 30.0% | |
| TTACCTATCTCTATACCAAA+AGG | - | 42982:6801-6820 | None:intergenic | 30.0% | |
| TTCATCAAGAATCATGTTGT+TGG | + | 42982:7203-7222 | MS.gene30686:intron | 30.0% | |
| TTCTCAAAAGAACTTGAGAA+TGG | - | 42982:6405-6424 | None:intergenic | 30.0% | |
| ! | AAATACCGAGTTTGGAATTT+AGG | - | 42982:7395-7414 | None:intergenic | 30.0% |
| ! | AAATTCCAAACTCGGTATTT+TGG | + | 42982:7395-7414 | MS.gene30686:intron | 30.0% |
| ! | AATTAATTGGAGGGTACAAT+TGG | - | 42982:8144-8163 | None:intergenic | 30.0% |
| ! | AGTGAAAGTACAAAATCTCT+AGG | - | 42982:6354-6373 | None:intergenic | 30.0% |
| ! | CAAAATCATGATTTTGTGCT+AGG | + | 42982:7922-7941 | MS.gene30686:intron | 30.0% |
| ! | CTAGCACAAAATCATGATTT+TGG | - | 42982:7924-7943 | None:intergenic | 30.0% |
| ! | TCCATTTCATGGTGTATTTT+AGG | - | 42982:7064-7083 | None:intergenic | 30.0% |
| ! | TGAGCTTTATAATGTAACAG+TGG | + | 42982:6926-6945 | MS.gene30686:CDS | 30.0% |
| !! | ATCATGATTTTGGTCTGAAT+TGG | - | 42982:7914-7933 | None:intergenic | 30.0% |
| !! | CTAATGCTTTGAAGAAAGTA+GGG | - | 42982:8174-8193 | None:intergenic | 30.0% |
| !! | CTCGGTATTTTGGATTTAAA+AGG | + | 42982:7405-7424 | MS.gene30686:intron | 30.0% |
| !! | TCATGATTTTGGTCTGAATT+GGG | - | 42982:7913-7932 | None:intergenic | 30.0% |
| !! | TCTAATGCTTTGAAGAAAGT+AGG | - | 42982:8175-8194 | None:intergenic | 30.0% |
| !!! | TACTCGTTCTTCGTTTTTTA+TGG | + | 42982:8629-8648 | MS.gene30686:intron | 30.0% |
| !!! | TTTTGTTTTTTTTCAGCCGA+GGG | + | 42982:7985-8004 | MS.gene30686:intron | 30.0% |
| ACACCAGTTCATTTCTTTGT+TGG | + | 42982:7511-7530 | MS.gene30686:intron | 35.0% | |
| ACGATCCTAAATTCCAAACT+CGG | + | 42982:7387-7406 | MS.gene30686:intron | 35.0% | |
| AGAAGCTAATATCTTGAGTC+GGG | - | 42982:7870-7889 | None:intergenic | 35.0% | |
| ATAAATACGGAAGGCCTTTA+AGG | + | 42982:6949-6968 | MS.gene30686:CDS | 35.0% | |
| ATCAAGAATCATGTTGTTGG+TGG | + | 42982:7206-7225 | MS.gene30686:intron | 35.0% | |
| ATCTCTATACCAAAAGGATC+CGG | - | 42982:6795-6814 | None:intergenic | 35.0% | |
| ATGATTGTGTTCATGTGAAG+AGG | + | 42982:7616-7635 | MS.gene30686:CDS | 35.0% | |
| CACCAGTTCATTTCTTTGTT+GGG | + | 42982:7512-7531 | MS.gene30686:intron | 35.0% | |
| CTCGGCTGAAAAAAAACAAA+AGG | - | 42982:7986-8005 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | + | 42982:7702-7721 | MS.gene30686:CDS | 35.0% | |
| GGTACACTCAATTAATTGGA+GGG | - | 42982:8153-8172 | None:intergenic | 35.0% | |
| GGTTCTGTCAAGATAAATGA+TGG | + | 42982:8489-8508 | MS.gene30686:CDS | 35.0% | |
| GTAGGGTACACTCAATTAAT+TGG | - | 42982:8157-8176 | None:intergenic | 35.0% | |
| TAACAGTGGATAAATACGGA+AGG | + | 42982:6940-6959 | MS.gene30686:CDS | 35.0% | |
| TACCCAACAAAGAAATGAAC+TGG | - | 42982:7517-7536 | None:intergenic | 35.0% | |
| TATAAGTGCAGTTTCATCGA+TGG | + | 42982:8732-8751 | MS.gene30686:intron | 35.0% | |
| TATGGAAATGGAAATGAAGC+AGG | + | 42982:8417-8436 | MS.gene30686:CDS | 35.0% | |
| TCATTTATCTTGACAGAACC+TGG | - | 42982:8489-8508 | None:intergenic | 35.0% | |
| TCTGTACCAAGTTATGGAAA+TGG | + | 42982:8405-8424 | MS.gene30686:CDS | 35.0% | |
| TGGATATATGTTTCGTGCAA+CGG | - | 42982:6591-6610 | None:intergenic | 35.0% | |
| TGTTCTTCTGTACCAAGTTA+TGG | + | 42982:8399-8418 | MS.gene30686:CDS | 35.0% | |
| TTAAGGCCAGATTATAAAGG+AGG | + | 42982:6966-6985 | MS.gene30686:CDS | 35.0% | |
| TTTAGGTAGAGACTTCTCTT+TGG | - | 42982:7047-7066 | None:intergenic | 35.0% | |
| ! | AATCATGTTGTTGGTGGAAA+TGG | + | 42982:7212-7231 | MS.gene30686:intron | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | 42982:8566-8585 | MS.gene30686:CDS | 35.0% |
| ! | ACGACACTCATTTTAAACAG+AGG | + | 42982:8280-8299 | MS.gene30686:intron | 35.0% |
| ! | CGACACTCATTTTAAACAGA+GGG | + | 42982:8281-8300 | MS.gene30686:intron | 35.0% |
| ! | GAGAGTTTTACCAATCATTG+TGG | + | 42982:7839-7858 | MS.gene30686:intron | 35.0% |
| ! | GATCCTTTTGGTATAGAGAT+AGG | + | 42982:6795-6814 | MS.gene30686:CDS | 35.0% |
| ! | GTCTCAATTGTTGTTGGTAT+GGG | - | 42982:8605-8624 | None:intergenic | 35.0% |
| ! | TGATACACAATGCAAGTTGA+AGG | + | 42982:7007-7026 | MS.gene30686:CDS | 35.0% |
| ! | TGATTTTATGGTGCCTGTTA+AGG | + | 42982:7094-7113 | MS.gene30686:CDS | 35.0% |
| ! | TGTCTCAATTGTTGTTGGTA+TGG | - | 42982:8606-8625 | None:intergenic | 35.0% |
| ! | TTGATTGCTACATGACCTTT+TGG | - | 42982:6525-6544 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | + | 42982:7020-7039 | MS.gene30686:CDS | 35.0% |
| !! | ACACCATGAAATGGATTGAT+TGG | + | 42982:7069-7088 | MS.gene30686:CDS | 35.0% |
| !! | CCTTTAAGGCCAGATTATAA+AGG | + | 42982:6963-6982 | MS.gene30686:CDS | 35.0% |
| !! | CCTTTATAATCTGGCCTTAA+AGG | - | 42982:6966-6985 | None:intergenic | 35.0% |
| !! | TCTACTTGTTATCCTAAACC+AGG | + | 42982:8468-8487 | MS.gene30686:CDS | 35.0% |
| !!! | CTTTTGTTTTTTTTCAGCCG+AGG | + | 42982:7984-8003 | MS.gene30686:intron | 35.0% |
| !!! | TAGAGTTTTGAAGCATCCTA+TGG | - | 42982:6674-6693 | None:intergenic | 35.0% |
| AATCCTGCAGAAATTCCAGA+AGG | + | 42982:6819-6838 | MS.gene30686:CDS | 40.0% | |
| ACATAACCACCAGTTTGTAG+TGG | - | 42982:7651-7670 | None:intergenic | 40.0% | |
| ACCAAAAGGATCCGGAATAT+CGG | - | 42982:6787-6806 | None:intergenic | 40.0% | |
| AGAAATTCCAGAAGGGTTTG+AGG | + | 42982:6827-6846 | MS.gene30686:CDS | 40.0% | |
| AGTTTGGATTAAGTGACCGT+TGG | + | 42982:7353-7372 | MS.gene30686:intron | 40.0% | |
| ATCCTGCAGAAATTCCAGAA+GGG | + | 42982:6820-6839 | MS.gene30686:CDS | 40.0% | |
| ATCGACATATCAATGACCGT+TGG | - | 42982:7447-7466 | None:intergenic | 40.0% | |
| ATCGTCTGAACTTGATCCAA+CGG | - | 42982:7372-7391 | None:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | - | 42982:8483-8502 | None:intergenic | 40.0% | |
| ATCTTGCAACAACCCAATGA+TGG | - | 42982:6611-6630 | None:intergenic | 40.0% | |
| CACAATCATTTCCCTCATCA+TGG | - | 42982:7605-7624 | None:intergenic | 40.0% | |
| CATAACCACCAGTTTGTAGT+GGG | - | 42982:7650-7669 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | + | 42982:7687-7706 | MS.gene30686:CDS | 40.0% | |
| GGGTACACTCAATTAATTGG+AGG | - | 42982:8154-8173 | None:intergenic | 40.0% | |
| GTGAATGGATCAGTGATTGT+TGG | + | 42982:7269-7288 | MS.gene30686:intron | 40.0% | |
| TATGTTCTCGTAAGGAACGA+TGG | + | 42982:6696-6715 | MS.gene30686:CDS | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | + | 42982:8425-8444 | MS.gene30686:CDS | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | + | 42982:7707-7726 | MS.gene30686:CDS | 40.0% | |
| TTTGTGCTAGGGTTCAAACT+TGG | + | 42982:7934-7953 | MS.gene30686:intron | 40.0% | |
| ! | ACACAATGCAAGTTGAAGGA+AGG | + | 42982:7011-7030 | MS.gene30686:CDS | 40.0% |
| ! | AGGTCCTTGCTCAAATTTTG+GGG | - | 42982:6463-6482 | None:intergenic | 40.0% |
| ! | CAGGTCCTTGCTCAAATTTT+GGG | - | 42982:6464-6483 | None:intergenic | 40.0% |
| ! | GAAATGGATTCCGTGTAGTT+GGG | + | 42982:7228-7247 | MS.gene30686:intron | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | + | 42982:7019-7038 | MS.gene30686:CDS | 40.0% |
| AAAGGATCCGGAATATCGGT+CGG | - | 42982:6783-6802 | None:intergenic | 45.0% | |
| AATGAAGCAGGAAATGAGGC+AGG | + | 42982:8429-8448 | MS.gene30686:CDS | 45.0% | |
| AATGAGGCAGGGTACATTGT+AGG | + | 42982:8441-8460 | MS.gene30686:CDS | 45.0% | |
| ACAAGTCTCCCACTACAAAC+TGG | + | 42982:7639-7658 | MS.gene30686:CDS | 45.0% | |
| ACTGTGGAAGAATATCTGCC+TGG | - | 42982:6728-6747 | None:intergenic | 45.0% | |
| AGCTAATATCTTGAGTCGGG+TGG | - | 42982:7867-7886 | None:intergenic | 45.0% | |
| ATGAAGCAGGAAATGAGGCA+GGG | + | 42982:8430-8449 | MS.gene30686:CDS | 45.0% | |
| ATTCATGCTATCGATACGCG+TGG | + | 42982:6867-6886 | MS.gene30686:CDS | 45.0% | |
| CCAAAATTTGAGCAAGGACC+TGG | + | 42982:6462-6481 | MS.gene30686:CDS | 45.0% | |
| GCTGTTGCTCATCAACATTC+AGG | + | 42982:7678-7697 | MS.gene30686:CDS | 45.0% | |
| GTGGCGTAGAGGATAAGTTA+GGG | + | 42982:6886-6905 | MS.gene30686:CDS | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | + | 42982:7681-7700 | MS.gene30686:CDS | 45.0% | |
| TGGTCCCCAAAATTTGAGCA+AGG | + | 42982:6456-6475 | MS.gene30686:CDS | 45.0% | |
| TGTAGCACAGACCATGATGA+GGG | + | 42982:7591-7610 | MS.gene30686:CDS | 45.0% | |
| TTCCTCGTGTTTCAGATCCA+AGG | - | 42982:6758-6777 | None:intergenic | 45.0% | |
| TTGTAGCACAGACCATGATG+AGG | + | 42982:7590-7609 | MS.gene30686:CDS | 45.0% | |
| ! | AAAGAGCACGCTGGAGTAAT+GGG | + | 42982:8549-8568 | MS.gene30686:CDS | 45.0% |
| ! | ACCGATATTCCGGATCCTTT+TGG | + | 42982:6783-6802 | MS.gene30686:CDS | 45.0% |
| ! | CCAGGTCCTTGCTCAAATTT+TGG | - | 42982:6465-6484 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGTTGATGAAGC+TGG | + | 42982:6555-6574 | MS.gene30686:CDS | 45.0% |
| ! | GGAAATGGATTCCGTGTAGT+TGG | + | 42982:7227-7246 | MS.gene30686:intron | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | 42982:8569-8588 | MS.gene30686:CDS | 45.0% |
| !! | AACCCTTCTGGAATTTCTGC+AGG | - | 42982:6825-6844 | None:intergenic | 45.0% |
| AAGGAACGATGGCATATGCC+AGG | + | 42982:6707-6726 | MS.gene30686:CDS | 50.0% | |
| AGGAACACCGACCGATATTC+CGG | + | 42982:6773-6792 | MS.gene30686:CDS | 50.0% | |
| AGTCTCCCACTACAAACTGG+TGG | + | 42982:7642-7661 | MS.gene30686:CDS | 50.0% | |
| CACTTCTCCTCAAACCCTTC+TGG | - | 42982:6837-6856 | None:intergenic | 50.0% | |
| CAGAAGGGTTTGAGGAGAAG+TGG | + | 42982:6835-6854 | MS.gene30686:CDS | 50.0% | |
| CATTACTCCAGCGTGCTCTT+TGG | - | 42982:8550-8569 | None:intergenic | 50.0% | |
| CCATTCACTGCGTGAATGCA+GGG | - | 42982:7257-7276 | None:intergenic | 50.0% | |
| CGTGGCGTAGAGGATAAGTT+AGG | + | 42982:6885-6904 | MS.gene30686:CDS | 50.0% | |
| CTTCCACAGTATTTCGGCCT+TGG | + | 42982:6738-6757 | MS.gene30686:CDS | 50.0% | |
| GATCCAAGGCCGAAATACTG+TGG | - | 42982:6744-6763 | None:intergenic | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | 42982:8584-8603 | None:intergenic | 50.0% | |
| TCCATTCACTGCGTGAATGC+AGG | - | 42982:7258-7277 | None:intergenic | 50.0% | |
| TCGGGTGGAACCACAATGAT+TGG | - | 42982:7852-7871 | None:intergenic | 50.0% | |
| ! | AACAACACCAAAGAGCACGC+TGG | + | 42982:8540-8559 | MS.gene30686:CDS | 50.0% |
| ! | CAAAGAGCACGCTGGAGTAA+TGG | + | 42982:8548-8567 | MS.gene30686:CDS | 50.0% |
| CCCTGCATTCACGCAGTGAA+TGG | + | 42982:7254-7273 | MS.gene30686:intron | 55.0% | |
| GCTTCTACAGTTGCGCGTAG+AGG | + | 42982:7884-7903 | MS.gene30686:intron | 55.0% | |
| TATCGATACGCGTGGCGTAG+AGG | + | 42982:6875-6894 | MS.gene30686:CDS | 55.0% | |
| TGCAGGGTCTCCCAACTACA+CGG | - | 42982:7241-7260 | None:intergenic | 55.0% | |
| ! | GGCCTTGGATCTGAAACACG+AGG | + | 42982:6753-6772 | MS.gene30686:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42982 | gene | 6333 | 8791 | 6333 | ID=MS.gene30686 |
| 42982 | mRNA | 6333 | 8791 | 6333 | ID=MS.gene30686.t1;Parent=MS.gene30686 |
| 42982 | exon | 6333 | 7193 | 6333 | ID=MS.gene30686.t1.exon1;Parent=MS.gene30686.t1 |
| 42982 | CDS | 6333 | 7193 | 6333 | ID=cds.MS.gene30686.t1;Parent=MS.gene30686.t1 |
| 42982 | exon | 7570 | 7728 | 7570 | ID=MS.gene30686.t1.exon2;Parent=MS.gene30686.t1 |
| 42982 | CDS | 7570 | 7728 | 7570 | ID=cds.MS.gene30686.t1;Parent=MS.gene30686.t1 |
| 42982 | exon | 8384 | 8640 | 8384 | ID=MS.gene30686.t1.exon3;Parent=MS.gene30686.t1 |
| 42982 | CDS | 8384 | 8640 | 8384 | ID=cds.MS.gene30686.t1;Parent=MS.gene30686.t1 |
| 42982 | exon | 8743 | 8791 | 8743 | ID=MS.gene30686.t1.exon4;Parent=MS.gene30686.t1 |
| 42982 | CDS | 8743 | 8791 | 8743 | ID=cds.MS.gene30686.t1;Parent=MS.gene30686.t1 |
| Gene Sequence |
| Protein sequence |
