Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34686.t1 | XP_003628361.1 | 93.9 | 472 | 25 | 1 | 1 | 468 | 15 | 486 | 7.60E-244 | 852.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34686.t1 | Q9SWI1 | 35.3 | 468 | 188 | 21 | 12 | 441 | 21 | 411 | 1.9e-41 | 171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34686.t1 | G7LA55 | 93.9 | 472 | 25 | 1 | 1 | 468 | 15 | 486 | 5.5e-244 | 852.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene34686 | 0.817986 | 2.48E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene34686 | 0.803354 | 3.63E-49 | -1.69E-46 |
| MS.gene049396 | MS.gene34686 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene34686 | 0.831565 | 1.55E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene34686 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene34686 | 0.837632 | 4.64E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene34686 | 0.844314 | 8.16E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene34686 | 0.829457 | 5.09E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene34686 | 0.833895 | 4.10E-56 | -1.69E-46 |
| MS.gene051666 | MS.gene34686 | 0.822108 | 2.83E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene34686 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene34686 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene052414 | MS.gene34686 | 0.812051 | 5.15E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene34686 | 0.829517 | 4.93E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene34686 | 0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene34686 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene34686 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene34686 | 0.81581 | 7.64E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene34686 | 0.809967 | 1.46E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene34686 | 0.8249 | 6.28E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene34686 | 0.851938 | 6.40E-61 | -1.69E-46 |
| MS.gene053626 | MS.gene34686 | 0.820476 | 6.72E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene34686 | 0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene34686 | 0.845919 | 3.01E-59 | -1.69E-46 |
| MS.gene054927 | MS.gene34686 | 0.800907 | 1.16E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene34686 | 0.851576 | 8.11E-61 | -1.69E-46 |
| MS.gene055224 | MS.gene34686 | 0.816045 | 6.77E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene34686 | 0.803343 | 3.65E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene34686 | 0.830914 | 2.24E-55 | -1.69E-46 |
| MS.gene055909 | MS.gene34686 | 0.824405 | 8.22E-54 | -1.69E-46 |
| MS.gene055911 | MS.gene34686 | 0.819448 | 1.16E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene34686 | 0.828956 | 6.74E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene34686 | 0.824911 | 6.24E-54 | -1.69E-46 |
| MS.gene056446 | MS.gene34686 | 0.841959 | 3.46E-58 | -1.69E-46 |
| MS.gene056448 | MS.gene34686 | 0.823297 | 1.49E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene34686 | 0.800067 | 1.71E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene34686 | 0.840499 | 8.38E-58 | -1.69E-46 |
| MS.gene057019 | MS.gene34686 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene34686 | 0.820523 | 6.56E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene34686 | 0.816242 | 6.12E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene34686 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene34686 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene058130 | MS.gene34686 | 0.829524 | 4.90E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene34686 | 0.821952 | 3.07E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene34686 | 0.816377 | 5.71E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene34686 | 0.808736 | 2.68E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene34686 | 0.805626 | 1.22E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene34686 | 0.812182 | 4.82E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene34686 | 0.829096 | 6.23E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene34686 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene34686 | 0.805127 | 1.55E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene34686 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene34686 | 0.827331 | 1.66E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene34686 | 0.806125 | 9.58E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene34686 | 0.84665 | 1.90E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34686.t1 | MTR_8g055860 | 96.822 | 472 | 11 | 1 | 1 | 468 | 15 | 486 | 0.0 | 940 |
| MS.gene34686.t1 | MTR_5g040340 | 46.931 | 505 | 178 | 22 | 3 | 468 | 7 | 460 | 2.03e-107 | 327 |
| MS.gene34686.t1 | MTR_7g088200 | 27.928 | 333 | 196 | 11 | 98 | 405 | 129 | 442 | 5.71e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34686.t1 | AT2G02950 | 36.281 | 441 | 171 | 19 | 34 | 441 | 48 | 411 | 2.35e-50 | 177 |
| MS.gene34686.t1 | AT1G14280 | 32.955 | 440 | 141 | 22 | 61 | 442 | 74 | 417 | 1.80e-35 | 137 |
Find 81 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGCTGTTAGAGTTTC+TGG | 0.087161 | 8.1:-46004252 | MS.gene34686:CDS |
| GCAGAAGAAATTGGAGTATT+TGG | 0.123215 | 8.1:-46005275 | MS.gene34686:CDS |
| AGAAAATCACTTGAAGTATT+TGG | 0.175678 | 8.1:-46004687 | MS.gene34686:CDS |
| GGTTTCAATGGTGTCCTTAT+TGG | 0.178083 | 8.1:+46004333 | None:intergenic |
| AATAACAAAACTTCTAAGTA+TGG | 0.262272 | 8.1:-46004942 | MS.gene34686:CDS |
| ATTCATTGACCAATGATAAA+AGG | 0.266711 | 8.1:-46004629 | MS.gene34686:CDS |
| GGAGTTTCTATGGTTGATAA+AGG | 0.283830 | 8.1:+46005319 | None:intergenic |
| GATGAAGAGGGGAGTTTCTA+TGG | 0.288069 | 8.1:+46005309 | None:intergenic |
| TTTCCAGGAGAGACAAATTA+TGG | 0.316379 | 8.1:-46004141 | MS.gene34686:CDS |
| CACTCTTTAAGAGTGCATTT+TGG | 0.317265 | 8.1:+46005099 | None:intergenic |
| TTCAAAAGCAAGAGAAGTTA+AGG | 0.319574 | 8.1:-46004803 | MS.gene34686:CDS |
| TCTCAAGTGGCAAGGTTTCC+AGG | 0.321527 | 8.1:-46004156 | MS.gene34686:CDS |
| CCTTCTTTGATATTCAAGTA+TGG | 0.329280 | 8.1:+46005386 | None:intergenic |
| AAACAATGAAAAGAGTAGTT+TGG | 0.330151 | 8.1:-46004772 | MS.gene34686:CDS |
| CGCTCGGCGCGTAACAATTC+GGG | 0.332057 | 8.1:+46004445 | None:intergenic |
| TCGCTCGGCGCGTAACAATT+CGG | 0.332325 | 8.1:+46004444 | None:intergenic |
| TTGTTTCTCATAAGTTATAA+AGG | 0.342594 | 8.1:+46004224 | None:intergenic |
| GTGGAAAAGGCAGAAGAAAT+TGG | 0.345679 | 8.1:-46005284 | MS.gene34686:CDS |
| TGATAAAGGGATTGATTGTT+TGG | 0.345694 | 8.1:+46005333 | None:intergenic |
| GGTGTCTCCTTAGCAACTTT+TGG | 0.352713 | 8.1:+46004312 | None:intergenic |
| AGAAAGTACCAAGTTGAGTA+TGG | 0.364459 | 8.1:-46005158 | MS.gene34686:CDS |
| TTATTGATCAATATTGGATT+TGG | 0.374889 | 8.1:+46004660 | None:intergenic |
| AGTGGAGTGAGAAATTCTAT+AGG | 0.378295 | 8.1:-46005080 | MS.gene34686:CDS |
| TGAAGCATGTGGCGAGTTAG+AGG | 0.378519 | 8.1:+46004068 | None:intergenic |
| CGGCGGCCTGGCATGTTGTT+GGG | 0.387012 | 8.1:-46004285 | MS.gene34686:CDS |
| AGACAAATTATGGTTCAAAA+AGG | 0.388140 | 8.1:-46004131 | MS.gene34686:CDS |
| GCGGCGGCCTGGCATGTTGT+TGG | 0.388150 | 8.1:-46004286 | MS.gene34686:CDS |
| TTACAATAAGGAGTCCAATA+AGG | 0.397883 | 8.1:-46004347 | MS.gene34686:CDS |
| ATGAATTAGTATAGTGCAAA+AGG | 0.407405 | 8.1:-46003837 | MS.gene34686:intron |
| TCTAAGTATGGTGCAGTTCA+AGG | 0.411902 | 8.1:-46004930 | MS.gene34686:CDS |
| GAACCATAATTTGTCTCTCC+TGG | 0.414611 | 8.1:+46004138 | None:intergenic |
| CCCTCTTCATCAAGTGGAAA+AGG | 0.418252 | 8.1:-46005297 | MS.gene34686:CDS |
| GTGGAGTGAGAAATTCTATA+GGG | 0.424894 | 8.1:-46005079 | MS.gene34686:CDS |
| GAGTTTCTATGGTTGATAAA+GGG | 0.435292 | 8.1:+46005320 | None:intergenic |
| AAATGTCTGAGTTTACAATA+AGG | 0.441417 | 8.1:-46004359 | MS.gene34686:CDS |
| CATTCTATGCTTGCCTCGCT+CGG | 0.445620 | 8.1:+46004429 | None:intergenic |
| TTATACCACACCACCATTGC+AGG | 0.447302 | 8.1:-46004091 | MS.gene34686:CDS |
| GAGACACCGAGGCGGCGGCC+TGG | 0.448368 | 8.1:-46004297 | MS.gene34686:CDS |
| AGGTACTTTGTAGAAGGTCT+TGG | 0.451368 | 8.1:+46005215 | None:intergenic |
| TCAAAAGCAAGAGAAGTTAA+GGG | 0.452923 | 8.1:-46004802 | MS.gene34686:CDS |
| TCTAGTAAGAAAATTGTTGT+TGG | 0.460554 | 8.1:+46004500 | None:intergenic |
| AACATGCCAGGCCGCCGCCT+CGG | 0.461235 | 8.1:+46004291 | None:intergenic |
| TTGTTTCCTTTCTCTGAGGA+AGG | 0.475302 | 8.1:+46005195 | None:intergenic |
| AGTAAGAAAATTGTTGTTGG+AGG | 0.489605 | 8.1:+46004503 | None:intergenic |
| TAAAACTGATTTCACTTGCA+TGG | 0.493162 | 8.1:+46004964 | None:intergenic |
| GCGCGTAACAATTCGGGCTA+AGG | 0.501756 | 8.1:+46004451 | None:intergenic |
| GTAAGAAAATTGTTGTTGGA+GGG | 0.511679 | 8.1:+46004504 | None:intergenic |
| AAAGTACCTTCCTCAGAGAA+AGG | 0.512613 | 8.1:-46005201 | MS.gene34686:CDS |
| TTGAGTAAGATTTCTGAGCT+AGG | 0.514673 | 8.1:+46004840 | None:intergenic |
| GTGCAAAAGGCAAAGAGGTA+TGG | 0.521742 | 8.1:-46003824 | MS.gene34686:CDS |
| CGAGCGAGGCAAGCATAGAA+TGG | 0.522757 | 8.1:-46004428 | MS.gene34686:CDS |
| TGAGGAAGGTACTTTGTAGA+AGG | 0.524612 | 8.1:+46005209 | None:intergenic |
| GTTGACACAGAGCTAATACT+TGG | 0.526983 | 8.1:+46005131 | None:intergenic |
| CTAAGGAGACACCGAGGCGG+CGG | 0.535226 | 8.1:-46004302 | MS.gene34686:CDS |
| CCATACTTGAATATCAAAGA+AGG | 0.535861 | 8.1:-46005386 | MS.gene34686:CDS |
| ATTGAAACCAAAAGTTGCTA+AGG | 0.536665 | 8.1:-46004319 | MS.gene34686:CDS |
| GTGAGAAATTCTATAGGGAA+TGG | 0.537374 | 8.1:-46005074 | MS.gene34686:CDS |
| TTTGAGATTGAGAGTCTCAA+AGG | 0.541185 | 8.1:-46004531 | MS.gene34686:CDS |
| AAACTCCCCTCTTCATCAAG+TGG | 0.542981 | 8.1:-46005303 | MS.gene34686:CDS |
| AGAAAACAGCATCATGGAGG+TGG | 0.557647 | 8.1:+46005411 | None:intergenic |
| TTGGAGTTCCATACTCAACT+TGG | 0.566689 | 8.1:+46005150 | None:intergenic |
| TTGCATCCCAACAACATGCC+AGG | 0.571543 | 8.1:+46004279 | None:intergenic |
| ATGGAGAGAAAACAGCATCA+TGG | 0.576053 | 8.1:+46005405 | None:intergenic |
| AAACAATACTAATTCTCAAG+TGG | 0.581231 | 8.1:-46004169 | MS.gene34686:CDS |
| ATACTAATTCTCAAGTGGCA+AGG | 0.582567 | 8.1:-46004164 | MS.gene34686:CDS |
| AAGCAAGAGAAGTTAAGGGT+AGG | 0.593464 | 8.1:-46004798 | MS.gene34686:CDS |
| CAAAATGCACTCTTAAAGAG+TGG | 0.600036 | 8.1:-46005098 | MS.gene34686:CDS |
| TATAGTAACTTTGAAGCATG+TGG | 0.603295 | 8.1:+46004057 | None:intergenic |
| GAGTTAGAGGCCTGCAATGG+TGG | 0.606643 | 8.1:+46004081 | None:intergenic |
| GTATTAGCTCTGTGTCAACA+TGG | 0.612942 | 8.1:-46005127 | MS.gene34686:CDS |
| TCCTCAGAGAAAGGAAACAA+TGG | 0.613500 | 8.1:-46005192 | MS.gene34686:CDS |
| AAAAGGCATGGACAACAACA+TGG | 0.618653 | 8.1:-46004114 | MS.gene34686:CDS |
| GCCATTGTTTCCTTTCTCTG+AGG | 0.638901 | 8.1:+46005191 | None:intergenic |
| AGAGGCCTGCAATGGTGGTG+TGG | 0.651196 | 8.1:+46004086 | None:intergenic |
| GAATTGTTACGCGCCGAGCG+AGG | 0.657760 | 8.1:-46004442 | MS.gene34686:CDS |
| GTATAGTGCAAAAGGCAAAG+AGG | 0.661197 | 8.1:-46003829 | MS.gene34686:intron |
| GGCGAGTTAGAGGCCTGCAA+TGG | 0.698179 | 8.1:+46004078 | None:intergenic |
| GGCAAGCATAGAATGGAGTG+TGG | 0.698772 | 8.1:-46004421 | MS.gene34686:CDS |
| GAGAGAAAACAGCATCATGG+AGG | 0.723218 | 8.1:+46005408 | None:intergenic |
| TTGCTAAGGAGACACCGAGG+CGG | 0.748620 | 8.1:-46004305 | MS.gene34686:CDS |
| AAGTTGCTAAGGAGACACCG+AGG | 0.821847 | 8.1:-46004308 | MS.gene34686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAAACTTCTAAGTA+TGG | - | chr8.1:46004319-46004338 | MS.gene34686:CDS | 20.0% |
| !! | TTATTGATCAATATTGGATT+TGG | + | chr8.1:46004604-46004623 | None:intergenic | 20.0% |
| !!! | AAATATCAACCTTTTATCAT+TGG | + | chr8.1:46004644-46004663 | None:intergenic | 20.0% |
| !!! | AGACTTTTTTTTTGTTGTTT+TGG | - | chr8.1:46005389-46005408 | MS.gene34686:CDS | 20.0% |
| !!! | CTTTTGTTATTGATCAATAT+TGG | + | chr8.1:46004610-46004629 | None:intergenic | 20.0% |
| !!! | TTATCAATTTCTTCCATTTT+TGG | + | chr8.1:46004667-46004686 | None:intergenic | 20.0% |
| !!! | TTGTTTCTCATAAGTTATAA+AGG | + | chr8.1:46005040-46005059 | None:intergenic | 20.0% |
| ! | AAACAATACTAATTCTCAAG+TGG | - | chr8.1:46005092-46005111 | MS.gene34686:CDS | 25.0% |
| ! | AAACAATGAAAAGAGTAGTT+TGG | - | chr8.1:46004489-46004508 | MS.gene34686:CDS | 25.0% |
| ! | AAATGTCTGAGTTTACAATA+AGG | - | chr8.1:46004902-46004921 | MS.gene34686:CDS | 25.0% |
| ! | AGACAAATTATGGTTCAAAA+AGG | - | chr8.1:46005130-46005149 | MS.gene34686:CDS | 25.0% |
| ! | ATGAATTAGTATAGTGCAAA+AGG | - | chr8.1:46005424-46005443 | MS.gene34686:CDS | 25.0% |
| ! | ATTCATTGACCAATGATAAA+AGG | - | chr8.1:46004632-46004651 | MS.gene34686:CDS | 25.0% |
| ! | GGAAAGTTTATAGCAAAAAT+TGG | - | chr8.1:46003896-46003915 | MS.gene34686:intron | 25.0% |
| ! | TCTAGTAAGAAAATTGTTGT+TGG | + | chr8.1:46004764-46004783 | None:intergenic | 25.0% |
| !! | AATACTTCAAGTGATTTTCT+TGG | + | chr8.1:46004574-46004593 | None:intergenic | 25.0% |
| !! | AGAAAATCACTTGAAGTATT+TGG | - | chr8.1:46004574-46004593 | MS.gene34686:CDS | 25.0% |
| !!! | AAGGTTGATATTTCCAAAAA+TGG | - | chr8.1:46004651-46004670 | MS.gene34686:CDS | 25.0% |
| !!! | TTGTTTCTGCTACTAATTTT+TGG | + | chr8.1:46005072-46005091 | None:intergenic | 25.0% |
| AATTATGGTTCAAAAAGGCA+TGG | - | chr8.1:46005135-46005154 | MS.gene34686:CDS | 30.0% | |
| ATTGAAACCAAAAGTTGCTA+AGG | - | chr8.1:46004942-46004961 | MS.gene34686:CDS | 30.0% | |
| CCATACTTGAATATCAAAGA+AGG | - | chr8.1:46003875-46003894 | MS.gene34686:intron | 30.0% | |
| CCTTCTTTGATATTCAAGTA+TGG | + | chr8.1:46003878-46003897 | None:intergenic | 30.0% | |
| GCTATGTAATACAAACACTT+CGG | - | chr8.1:46005243-46005262 | MS.gene34686:CDS | 30.0% | |
| GCTGAAAAATACTTCAATAG+AGG | - | chr8.1:46004010-46004029 | MS.gene34686:intron | 30.0% | |
| TCAAAAGCAAGAGAAGTTAA+GGG | - | chr8.1:46004459-46004478 | MS.gene34686:CDS | 30.0% | |
| TGATAAAGGGATTGATTGTT+TGG | + | chr8.1:46003931-46003950 | None:intergenic | 30.0% | |
| TTACAATAAGGAGTCCAATA+AGG | - | chr8.1:46004914-46004933 | MS.gene34686:CDS | 30.0% | |
| TTCAAAAGCAAGAGAAGTTA+AGG | - | chr8.1:46004458-46004477 | MS.gene34686:CDS | 30.0% | |
| ! | AGTAAGAAAATTGTTGTTGG+AGG | + | chr8.1:46004761-46004780 | None:intergenic | 30.0% |
| ! | GTAAGAAAATTGTTGTTGGA+GGG | + | chr8.1:46004760-46004779 | None:intergenic | 30.0% |
| ! | TAAAACTGATTTCACTTGCA+TGG | + | chr8.1:46004300-46004319 | None:intergenic | 30.0% |
| !! | CCAAAAAAAGTGTTCAATCT+TGG | - | chr8.1:46004364-46004383 | MS.gene34686:CDS | 30.0% |
| !! | GAGTTTCTATGGTTGATAAA+GGG | + | chr8.1:46003944-46003963 | None:intergenic | 30.0% |
| !! | TATAGTAACTTTGAAGCATG+TGG | + | chr8.1:46005207-46005226 | None:intergenic | 30.0% |
| !!! | CCAAGATTGAACACTTTTTT+TGG | + | chr8.1:46004367-46004386 | None:intergenic | 30.0% |
| !!! | TTAGCAACTTTTGGTTTCAA+TGG | + | chr8.1:46004943-46004962 | None:intergenic | 30.0% |
| AAATGTAACCACATGTGTCT+CGG | + | chr8.1:46005300-46005319 | None:intergenic | 35.0% | |
| AATGGCAAAGAAAAAGAGCA+TGG | - | chr8.1:46004205-46004224 | MS.gene34686:CDS | 35.0% | |
| AGTGGAGTGAGAAATTCTAT+AGG | - | chr8.1:46004181-46004200 | MS.gene34686:CDS | 35.0% | |
| ATACTAATTCTCAAGTGGCA+AGG | - | chr8.1:46005097-46005116 | MS.gene34686:CDS | 35.0% | |
| CAAAATGCACTCTTAAAGAG+TGG | - | chr8.1:46004163-46004182 | MS.gene34686:CDS | 35.0% | |
| GTGAGAAATTCTATAGGGAA+TGG | - | chr8.1:46004187-46004206 | MS.gene34686:CDS | 35.0% | |
| GTGGAGTGAGAAATTCTATA+GGG | - | chr8.1:46004182-46004201 | MS.gene34686:CDS | 35.0% | |
| TACAAACACTTCGGATTTGA+AGG | - | chr8.1:46005252-46005271 | MS.gene34686:CDS | 35.0% | |
| TTGAGTAAGATTTCTGAGCT+AGG | + | chr8.1:46004424-46004443 | None:intergenic | 35.0% | |
| TTTCCAGGAGAGACAAATTA+TGG | - | chr8.1:46005120-46005139 | MS.gene34686:CDS | 35.0% | |
| ! | GCAGAAGAAATTGGAGTATT+TGG | - | chr8.1:46003986-46004005 | MS.gene34686:intron | 35.0% |
| ! | TTTGAGATTGAGAGTCTCAA+AGG | - | chr8.1:46004730-46004749 | MS.gene34686:CDS | 35.0% |
| !! | AGAAAGTACCAAGTTGAGTA+TGG | - | chr8.1:46004103-46004122 | MS.gene34686:CDS | 35.0% |
| !! | CACTCTTTAAGAGTGCATTT+TGG | + | chr8.1:46004165-46004184 | None:intergenic | 35.0% |
| !! | GGAGTTTCTATGGTTGATAA+AGG | + | chr8.1:46003945-46003964 | None:intergenic | 35.0% |
| AAGCAAGAGAAGTTAAGGGT+AGG | - | chr8.1:46004463-46004482 | MS.gene34686:CDS | 40.0% | |
| AAGGTGTGACTATTAGTGTC+TGG | - | chr8.1:46005271-46005290 | MS.gene34686:CDS | 40.0% | |
| AGGTACTTTGTAGAAGGTCT+TGG | + | chr8.1:46004049-46004068 | None:intergenic | 40.0% | |
| ATGGAGAGAAAACAGCATCA+TGG | + | chr8.1:46003859-46003878 | None:intergenic | 40.0% | |
| CACAAAGCTGTTAGAGTTTC+TGG | - | chr8.1:46005009-46005028 | MS.gene34686:CDS | 40.0% | |
| GGTTTCAATGGTGTCCTTAT+TGG | + | chr8.1:46004931-46004950 | None:intergenic | 40.0% | |
| GTATAGTGCAAAAGGCAAAG+AGG | - | chr8.1:46005432-46005451 | MS.gene34686:CDS | 40.0% | |
| GTGGAAAAGGCAGAAGAAAT+TGG | - | chr8.1:46003977-46003996 | MS.gene34686:intron | 40.0% | |
| GTTGACACAGAGCTAATACT+TGG | + | chr8.1:46004133-46004152 | None:intergenic | 40.0% | |
| TCCTCAGAGAAAGGAAACAA+TGG | - | chr8.1:46004069-46004088 | MS.gene34686:CDS | 40.0% | |
| TCTAAGTATGGTGCAGTTCA+AGG | - | chr8.1:46004331-46004350 | MS.gene34686:CDS | 40.0% | |
| TTGGAGTTCCATACTCAACT+TGG | + | chr8.1:46004114-46004133 | None:intergenic | 40.0% | |
| ! | AAAAGGCATGGACAACAACA+TGG | - | chr8.1:46005147-46005166 | MS.gene34686:CDS | 40.0% |
| ! | AAAGTACCTTCCTCAGAGAA+AGG | - | chr8.1:46004060-46004079 | MS.gene34686:intron | 40.0% |
| ! | CCTTTTCCACTTGATGAAGA+GGG | + | chr8.1:46003967-46003986 | None:intergenic | 40.0% |
| ! | CTTTTCCACTTGATGAAGAG+GGG | + | chr8.1:46003966-46003985 | None:intergenic | 40.0% |
| ! | GAACCATAATTTGTCTCTCC+TGG | + | chr8.1:46005126-46005145 | None:intergenic | 40.0% |
| ! | TTGTTTCCTTTCTCTGAGGA+AGG | + | chr8.1:46004069-46004088 | None:intergenic | 40.0% |
| !! | GTATTAGCTCTGTGTCAACA+TGG | - | chr8.1:46004134-46004153 | MS.gene34686:CDS | 40.0% |
| !! | TGAGGAAGGTACTTTGTAGA+AGG | + | chr8.1:46004055-46004074 | None:intergenic | 40.0% |
| AAACTCCCCTCTTCATCAAG+TGG | - | chr8.1:46003958-46003977 | MS.gene34686:intron | 45.0% | |
| AAATGTGTTAGTGTCGTGCC+TGG | - | chr8.1:46005337-46005356 | MS.gene34686:CDS | 45.0% | |
| AGAAAACAGCATCATGGAGG+TGG | + | chr8.1:46003853-46003872 | None:intergenic | 45.0% | |
| CCCTCTTCATCAAGTGGAAA+AGG | - | chr8.1:46003964-46003983 | MS.gene34686:intron | 45.0% | |
| GAGAGAAAACAGCATCATGG+AGG | + | chr8.1:46003856-46003875 | None:intergenic | 45.0% | |
| GATGAAGAGGGGAGTTTCTA+TGG | + | chr8.1:46003955-46003974 | None:intergenic | 45.0% | |
| GCCATTGTTTCCTTTCTCTG+AGG | + | chr8.1:46004073-46004092 | None:intergenic | 45.0% | |
| GTGCAAAAGGCAAAGAGGTA+TGG | - | chr8.1:46005437-46005456 | MS.gene34686:CDS | 45.0% | |
| TTATACCACACCACCATTGC+AGG | - | chr8.1:46005170-46005189 | MS.gene34686:CDS | 45.0% | |
| ! | GCCTTTTCCACTTGATGAAG+AGG | + | chr8.1:46003968-46003987 | None:intergenic | 45.0% |
| ! | GGTGTCTCCTTAGCAACTTT+TGG | + | chr8.1:46004952-46004971 | None:intergenic | 45.0% |
| AAGTTGCTAAGGAGACACCG+AGG | - | chr8.1:46004953-46004972 | MS.gene34686:CDS | 50.0% | |
| CATTCTATGCTTGCCTCGCT+CGG | + | chr8.1:46004835-46004854 | None:intergenic | 50.0% | |
| GGCAAGCATAGAATGGAGTG+TGG | - | chr8.1:46004840-46004859 | MS.gene34686:CDS | 50.0% | |
| TCTCAAGTGGCAAGGTTTCC+AGG | - | chr8.1:46005105-46005124 | MS.gene34686:CDS | 50.0% | |
| TCTGGTATCCGAGACACATG+TGG | - | chr8.1:46005289-46005308 | MS.gene34686:CDS | 50.0% | |
| TGAAGCATGTGGCGAGTTAG+AGG | + | chr8.1:46005196-46005215 | None:intergenic | 50.0% | |
| TTGCATCCCAACAACATGCC+AGG | + | chr8.1:46004985-46005004 | None:intergenic | 50.0% | |
| CGAGCGAGGCAAGCATAGAA+TGG | - | chr8.1:46004833-46004852 | MS.gene34686:CDS | 55.0% | |
| GAGTTAGAGGCCTGCAATGG+TGG | + | chr8.1:46005183-46005202 | None:intergenic | 55.0% | |
| GCGCGTAACAATTCGGGCTA+AGG | + | chr8.1:46004813-46004832 | None:intergenic | 55.0% | |
| GTCGTGCCTGGTGTATGTGT+CGG | - | chr8.1:46005349-46005368 | MS.gene34686:CDS | 55.0% | |
| TCGCTCGGCGCGTAACAATT+CGG | + | chr8.1:46004820-46004839 | None:intergenic | 55.0% | |
| TTGCTAAGGAGACACCGAGG+CGG | - | chr8.1:46004956-46004975 | MS.gene34686:CDS | 55.0% | |
| !! | GAAGCACCGACACATACACC+AGG | + | chr8.1:46005358-46005377 | None:intergenic | 55.0% |
| CGCTCGGCGCGTAACAATTC+GGG | + | chr8.1:46004819-46004838 | None:intergenic | 60.0% | |
| GAATTGTTACGCGCCGAGCG+AGG | - | chr8.1:46004819-46004838 | MS.gene34686:CDS | 60.0% | |
| GGCGAGTTAGAGGCCTGCAA+TGG | + | chr8.1:46005186-46005205 | None:intergenic | 60.0% | |
| ! | AGAGGCCTGCAATGGTGGTG+TGG | + | chr8.1:46005178-46005197 | None:intergenic | 60.0% |
| CGGCGGCCTGGCATGTTGTT+GGG | - | chr8.1:46004976-46004995 | MS.gene34686:CDS | 65.0% | |
| CTAAGGAGACACCGAGGCGG+CGG | - | chr8.1:46004959-46004978 | MS.gene34686:CDS | 65.0% | |
| AACATGCCAGGCCGCCGCCT+CGG | + | chr8.1:46004973-46004992 | None:intergenic | 70.0% | |
| GCGGCGGCCTGGCATGTTGT+TGG | - | chr8.1:46004975-46004994 | MS.gene34686:CDS | 70.0% | |
| ! | GAGACACCGAGGCGGCGGCC+TGG | - | chr8.1:46004964-46004983 | MS.gene34686:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 46003812 | 46005471 | 46003812 | ID=MS.gene34686 |
| chr8.1 | mRNA | 46003812 | 46005471 | 46003812 | ID=MS.gene34686.t1;Parent=MS.gene34686 |
| chr8.1 | exon | 46004066 | 46005471 | 46004066 | ID=MS.gene34686.t1.exon1;Parent=MS.gene34686.t1 |
| chr8.1 | CDS | 46004066 | 46005471 | 46004066 | ID=cds.MS.gene34686.t1;Parent=MS.gene34686.t1 |
| chr8.1 | exon | 46003812 | 46003845 | 46003812 | ID=MS.gene34686.t1.exon2;Parent=MS.gene34686.t1 |
| chr8.1 | CDS | 46003812 | 46003845 | 46003812 | ID=cds.MS.gene34686.t1;Parent=MS.gene34686.t1 |
| Gene Sequence |
| Protein sequence |
