Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34850.t1 | AET03093.2 | 66.3 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 5.70E-78 | 300.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34850.t1 | G7LEP8 | 66.3 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 4.1e-78 | 300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene34850 | 0.854904 | 9.02E-62 | -1.69E-46 |
| MS.gene049254 | MS.gene34850 | 0.839121 | 1.91E-57 | -1.69E-46 |
| MS.gene049350 | MS.gene34850 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene34850 | 0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene34850 | 0.807085 | 6.00E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene34850 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene34850 | 0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene34850 | 0.800564 | 1.36E-48 | -1.69E-46 |
| MS.gene051201 | MS.gene34850 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene34850 | 0.80712 | 5.90E-50 | -1.69E-46 |
| MS.gene051332 | MS.gene34850 | 0.809586 | 1.76E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene34850 | 0.800663 | 1.30E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene34850 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene052168 | MS.gene34850 | 0.8261 | 3.27E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene34850 | 0.831097 | 2.02E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene34850 | 0.806453 | 8.16E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene34850 | 0.819611 | 1.06E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene34850 | 0.826554 | 2.55E-54 | -1.69E-46 |
| MS.gene052534 | MS.gene34850 | 0.831384 | 1.72E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene34850 | 0.808704 | 2.72E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene34850 | 0.810893 | 9.19E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene34850 | 0.801919 | 7.17E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene34850 | 0.836045 | 1.18E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene34850 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene34850 | 0.802098 | 6.59E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene34850 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene34850 | 0.812291 | 4.56E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene34850 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene34850 | 0.811913 | 5.52E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene34850 | 0.803919 | 2.77E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene34850 | 0.817733 | 2.83E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene34850 | 0.804432 | 2.17E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene34850 | 0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene34850 | 0.853097 | 2.99E-61 | -1.69E-46 |
| MS.gene054775 | MS.gene34850 | 0.817773 | 2.77E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene34850 | 0.816444 | 5.51E-52 | -1.69E-46 |
| MS.gene054991 | MS.gene34850 | 0.823847 | 1.11E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene34850 | 0.808595 | 2.87E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene34850 | 0.825602 | 4.29E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene34850 | 0.801765 | 7.71E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene34850 | 0.80463 | 1.97E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene34850 | 0.83773 | 4.37E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene34850 | 0.817535 | 3.14E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene34850 | 0.819155 | 1.35E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene34850 | 0.800714 | 1.27E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene34850 | 0.815117 | 1.09E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene34850 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene34850 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene34850 | 0.828557 | 8.42E-55 | -1.69E-46 |
| MS.gene057598 | MS.gene34850 | 0.804261 | 2.35E-49 | -1.69E-46 |
| MS.gene057611 | MS.gene34850 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene34850 | 0.824702 | 7.00E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene34850 | 0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene34850 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene058427 | MS.gene34850 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene34850 | 0.829109 | 6.19E-55 | -1.69E-46 |
| MS.gene058781 | MS.gene34850 | 0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene34850 | 0.816563 | 5.19E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene34850 | 0.825009 | 5.92E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene34850 | 0.836246 | 1.05E-56 | -1.69E-46 |
| MS.gene059570 | MS.gene34850 | 0.834027 | 3.80E-56 | -1.69E-46 |
| MS.gene06052 | MS.gene34850 | 0.833826 | 4.27E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene34850 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene34850 | 0.816826 | 4.53E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene34850 | 0.800444 | 1.44E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34850.t1 | MTR_8g062660 | 66.279 | 258 | 35 | 5 | 1 | 243 | 300 | 520 | 1.30e-102 | 311 |
| MS.gene34850.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 8.43e-37 | 137 |
| MS.gene34850.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 8.45e-37 | 137 |
| MS.gene34850.t1 | MTR_3g005240 | 56.338 | 142 | 50 | 3 | 48 | 177 | 82 | 223 | 9.35e-37 | 137 |
| MS.gene34850.t1 | MTR_3g005240 | 84.058 | 69 | 11 | 0 | 176 | 244 | 1569 | 1637 | 9.92e-31 | 120 |
| MS.gene34850.t1 | MTR_2g021190 | 45.349 | 86 | 41 | 3 | 1 | 83 | 293 | 375 | 1.31e-15 | 75.5 |
| MS.gene34850.t1 | MTR_2g029990 | 41.860 | 86 | 44 | 3 | 1 | 83 | 323 | 405 | 3.06e-13 | 68.9 |
| MS.gene34850.t1 | MTR_1g114700 | 42.697 | 89 | 45 | 3 | 1 | 83 | 302 | 390 | 4.41e-13 | 68.2 |
| MS.gene34850.t1 | MTR_0044s0300 | 44.944 | 89 | 43 | 3 | 1 | 83 | 304 | 392 | 6.42e-13 | 67.8 |
| MS.gene34850.t1 | MTR_3g083660 | 47.191 | 89 | 40 | 5 | 1 | 83 | 195 | 282 | 9.40e-13 | 66.6 |
| MS.gene34850.t1 | MTR_2g078870 | 42.222 | 90 | 45 | 3 | 1 | 83 | 221 | 310 | 1.17e-11 | 63.9 |
| MS.gene34850.t1 | MTR_1g055070 | 41.667 | 84 | 44 | 2 | 3 | 81 | 310 | 393 | 1.23e-11 | 63.9 |
| MS.gene34850.t1 | MTR_3g030320 | 44.444 | 90 | 43 | 4 | 1 | 83 | 212 | 301 | 1.95e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTCTGCTGATGTTCTT+AGG | 0.260894 | 8.2:+38826840 | MS.gene34850:CDS |
| AATTTCAGAAGAATAATTTC+TGG | 0.298959 | 8.2:-38824693 | None:intergenic |
| TATTTGCGTCGATCACTTGC+TGG | 0.308751 | 8.2:+38825732 | MS.gene34850:CDS |
| GCTTCAACATAGAGCTTATA+TGG | 0.314194 | 8.2:+38824721 | MS.gene34850:CDS |
| AAAAGAAGAAACAAATATCT+AGG | 0.326693 | 8.2:+38825667 | MS.gene34850:CDS |
| ATATGGATGATGATGGAATT+CGG | 0.334275 | 8.2:+38824527 | None:intergenic |
| TCTTAATATTACTACTCATT+TGG | 0.342974 | 8.2:+38825707 | MS.gene34850:CDS |
| TATGGATGATGATGGAATTC+GGG | 0.367767 | 8.2:+38824528 | None:intergenic |
| TTTGACAAGTTTGGAGTGTA+AGG | 0.381139 | 8.2:+38825617 | MS.gene34850:CDS |
| TTTGACAAAGGTTGAACAAC+AGG | 0.391782 | 8.2:-38826779 | None:intergenic |
| AAGCTTTCCTTGTAGACTAC+TGG | 0.411811 | 8.2:-38824746 | None:intergenic |
| TTCTAATGCTGCATAATAAG+AGG | 0.448327 | 8.2:+38824645 | MS.gene34850:CDS |
| TGAGTAATAGCTTTGATTCG+AGG | 0.460122 | 8.2:-38825837 | None:intergenic |
| CTCTGAAATATATAAAACCT+TGG | 0.479174 | 8.2:-38824612 | None:intergenic |
| AAATGAGTAGTAATATTAAG+AGG | 0.494339 | 8.2:-38825705 | None:intergenic |
| AATAAGAGGCAATGTCAGTT+GGG | 0.498008 | 8.2:+38824659 | MS.gene34850:CDS |
| ATATATAAAACCTTGGCAAA+GGG | 0.514775 | 8.2:-38824605 | None:intergenic |
| TAATAAGAGGCAATGTCAGT+TGG | 0.515862 | 8.2:+38824658 | MS.gene34850:CDS |
| ATTTGCGTCGATCACTTGCT+GGG | 0.516272 | 8.2:+38825733 | MS.gene34850:CDS |
| CTTGATATCGCCTTGTTCGT+TGG | 0.517485 | 8.2:+38824766 | MS.gene34850:CDS |
| GTTCTTAGGAAAAGAAACTC+TGG | 0.518016 | 8.2:+38826854 | MS.gene34850:CDS |
| AAAGAAGAAACAAATATCTA+GGG | 0.534460 | 8.2:+38825668 | MS.gene34850:CDS |
| AAATAAACAAACCTTGCCAT+TGG | 0.536826 | 8.2:-38825874 | None:intergenic |
| AATATATAAAACCTTGGCAA+AGG | 0.542362 | 8.2:-38824606 | None:intergenic |
| TTAATGATCTTGTTTGACAA+AGG | 0.558427 | 8.2:-38826791 | None:intergenic |
| TTGACAAGTTTGGAGTGTAA+GGG | 0.560372 | 8.2:+38825618 | MS.gene34850:CDS |
| TTCACTGTGGCCAACGAACA+AGG | 0.560502 | 8.2:-38824776 | None:intergenic |
| GGATGCTGATCTGCAATGGA+AGG | 0.566891 | 8.2:-38824584 | None:intergenic |
| AGATCAGCATCCCTTTGCCA+AGG | 0.582019 | 8.2:+38824595 | MS.gene34850:CDS |
| CTGATCTGCAATGGAAGGAA+TGG | 0.582531 | 8.2:-38824579 | None:intergenic |
| TATGGATCCAGTAGTCTACA+AGG | 0.586786 | 8.2:+38824739 | MS.gene34850:CDS |
| ACTAGCAAATGCCAATGGCA+AGG | 0.616872 | 8.2:+38825863 | MS.gene34850:CDS |
| CATAAACTAGCAAATGCCAA+TGG | 0.625784 | 8.2:+38825858 | MS.gene34850:CDS |
| AAAGGGATGCTGATCTGCAA+TGG | 0.626363 | 8.2:-38824588 | None:intergenic |
| AATTCGGGAATAATGAGTCA+TGG | 0.641992 | 8.2:+38824543 | MS.gene34850:CDS |
| GTAAAACAAACATCAGTCTG+AGG | 0.652774 | 8.2:-38825804 | None:intergenic |
| CTGCCGAAAAGTACTTGTGA+TGG | 0.675795 | 8.2:-38826739 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTATTCTTAAGT+TGG | + | chr8.2:38826636-38826655 | MS.gene34850:intron | 10.0% |
| !! | TTATAATAATAAAATTGTCA+AGG | - | chr8.2:38826087-38826106 | None:intergenic | 10.0% |
| !!! | TTTAATTTGTTTCTTTTTGT+AGG | + | chr8.2:38826676-38826695 | MS.gene34850:intron | 15.0% |
| !! | AAAAGAACTACTTAAGAATA+AGG | - | chr8.2:38826420-38826439 | None:intergenic | 20.0% |
| !! | AAAAGAAGAAACAAATATCT+AGG | + | chr8.2:38825667-38825686 | MS.gene34850:CDS | 20.0% |
| !! | AAAATGCAACATGTAATAAT+TGG | - | chr8.2:38824978-38824997 | None:intergenic | 20.0% |
| !! | AAAGAAGAAACAAATATCTA+GGG | + | chr8.2:38825668-38825687 | MS.gene34850:CDS | 20.0% |
| !! | AAATGAGTAGTAATATTAAG+AGG | - | chr8.2:38825708-38825727 | None:intergenic | 20.0% |
| !! | AATTTCAGAAGAATAATTTC+TGG | - | chr8.2:38824696-38824715 | None:intergenic | 20.0% |
| !! | ATAGCTCATATCATATTTAT+AGG | + | chr8.2:38825394-38825413 | MS.gene34850:intron | 20.0% |
| !! | GTTTATAATGTCAATTCATA+AGG | - | chr8.2:38824930-38824949 | None:intergenic | 20.0% |
| !! | TCTTAATATTACTACTCATT+TGG | + | chr8.2:38825707-38825726 | MS.gene34850:CDS | 20.0% |
| !! | TGAAAATTGAAAATGAATAG+TGG | + | chr8.2:38825309-38825328 | MS.gene34850:intron | 20.0% |
| !! | TGCAAAATATACTCTTTATT+TGG | + | chr8.2:38825233-38825252 | MS.gene34850:intron | 20.0% |
| !!! | ATACAGTTTTAAGAAATTAC+AGG | - | chr8.2:38825486-38825505 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTCTTCTTTTCA+AGG | - | chr8.2:38825665-38825684 | None:intergenic | 20.0% |
| !!! | TAACCAAGGTTTTAAATTTT+TGG | + | chr8.2:38825935-38825954 | MS.gene34850:intron | 20.0% |
| !!! | TTTTTGATAGCAATAATGAA+AGG | - | chr8.2:38826139-38826158 | None:intergenic | 20.0% |
| ! | AATATATAAAACCTTGGCAA+AGG | - | chr8.2:38824609-38824628 | None:intergenic | 25.0% |
| ! | ATATATAAAACCTTGGCAAA+GGG | - | chr8.2:38824608-38824627 | None:intergenic | 25.0% |
| ! | ATCAATGATGGTATATTTGT+TGG | + | chr8.2:38824798-38824817 | MS.gene34850:intron | 25.0% |
| !! | GAGTATATTTTGCAATTATC+AGG | - | chr8.2:38825227-38825246 | None:intergenic | 25.0% |
| !! | GTTCCAAAAATTTAAAACCT+TGG | - | chr8.2:38825941-38825960 | None:intergenic | 25.0% |
| !! | TTAATGATCTTGTTTGACAA+AGG | - | chr8.2:38826794-38826813 | None:intergenic | 25.0% |
| !! | TTCATAGTTTTTGACAAGTT+TGG | + | chr8.2:38825608-38825627 | MS.gene34850:intron | 25.0% |
| !!! | AGGTTTTAAATTTTTGGAAC+TGG | + | chr8.2:38825941-38825960 | MS.gene34850:intron | 25.0% |
| !!! | CAAGGTTTTATATATTTCAG+AGG | + | chr8.2:38824613-38824632 | MS.gene34850:CDS | 25.0% |
| !!! | CTCATTAAATGTTTTAACCA+AGG | + | chr8.2:38825921-38825940 | MS.gene34850:intron | 25.0% |
| !!! | CTCTGAAATATATAAAACCT+TGG | - | chr8.2:38824615-38824634 | None:intergenic | 25.0% |
| !!! | GCTAGTTTTTTAATTTGAGA+AGG | + | chr8.2:38825073-38825092 | MS.gene34850:intron | 25.0% |
| !!! | TGCTTAAAAACAGAAGTATT+GGG | + | chr8.2:38825566-38825585 | MS.gene34850:intron | 25.0% |
| AAAACTTTCAACTTCTTCTG+AGG | - | chr8.2:38826605-38826624 | None:intergenic | 30.0% | |
| AAATAAACAAACCTTGCCAT+TGG | - | chr8.2:38825877-38825896 | None:intergenic | 30.0% | |
| CAAATTAAAAAACTAGCAGC+AGG | - | chr8.2:38825070-38825089 | None:intergenic | 30.0% | |
| CACAACAATCTTTGATATTG+CGG | + | chr8.2:38825975-38825994 | MS.gene34850:intron | 30.0% | |
| CTTATCTTCAAATCATACCT+GGG | + | chr8.2:38825194-38825213 | MS.gene34850:intron | 30.0% | |
| TATACCAAGAAGATTGTGTA+GGG | + | chr8.2:38825503-38825522 | MS.gene34850:intron | 30.0% | |
| TGACTATATGACTCTTGTTA+AGG | - | chr8.2:38826021-38826040 | None:intergenic | 30.0% | |
| TTCTAATGCTGCATAATAAG+AGG | + | chr8.2:38824645-38824664 | MS.gene34850:CDS | 30.0% | |
| ! | GTGCAAATATATACTGCTTT+TGG | + | chr8.2:38826491-38826510 | MS.gene34850:intron | 30.0% |
| ! | GTGCTTAAAAACAGAAGTAT+TGG | + | chr8.2:38825565-38825584 | MS.gene34850:intron | 30.0% |
| !! | AAAAACAGAAGTATTGGGTT+TGG | + | chr8.2:38825571-38825590 | MS.gene34850:intron | 30.0% |
| !! | ATATACTGCTTTTGGTAGTT+TGG | + | chr8.2:38826499-38826518 | MS.gene34850:intron | 30.0% |
| !!! | TCAGACTGATGTTTGTTTTA+CGG | + | chr8.2:38825806-38825825 | MS.gene34850:CDS | 30.0% |
| AAAAGACAGGTTGCTAAAGT+TGG | + | chr8.2:38825148-38825167 | MS.gene34850:intron | 35.0% | |
| AAAATCGCCATCATAGAGTA+TGG | + | chr8.2:38826277-38826296 | MS.gene34850:intron | 35.0% | |
| AACAATCTTTGATATTGCGG+AGG | + | chr8.2:38825978-38825997 | MS.gene34850:intron | 35.0% | |
| AATAAGAGGCAATGTCAGTT+GGG | + | chr8.2:38824659-38824678 | MS.gene34850:CDS | 35.0% | |
| AATTATCAGGATAATTGCCC+AGG | - | chr8.2:38825214-38825233 | None:intergenic | 35.0% | |
| AATTCGGGAATAATGAGTCA+TGG | + | chr8.2:38824543-38824562 | MS.gene34850:CDS | 35.0% | |
| ACAATCTTTGATATTGCGGA+GGG | + | chr8.2:38825979-38825998 | MS.gene34850:intron | 35.0% | |
| ACAGTATAAGAGCTTCTACT+CGG | - | chr8.2:38826394-38826413 | None:intergenic | 35.0% | |
| CATAAACTAGCAAATGCCAA+TGG | + | chr8.2:38825858-38825877 | MS.gene34850:CDS | 35.0% | |
| CCAGGTATGATTTGAAGATA+AGG | - | chr8.2:38825196-38825215 | None:intergenic | 35.0% | |
| CCTTATCTTCAAATCATACC+TGG | + | chr8.2:38825193-38825212 | MS.gene34850:intron | 35.0% | |
| GCTTCAACATAGAGCTTATA+TGG | + | chr8.2:38824721-38824740 | MS.gene34850:CDS | 35.0% | |
| GTAAAACAAACATCAGTCTG+AGG | - | chr8.2:38825807-38825826 | None:intergenic | 35.0% | |
| GTATACCAAGAAGATTGTGT+AGG | + | chr8.2:38825502-38825521 | MS.gene34850:intron | 35.0% | |
| GTTCTTAGGAAAAGAAACTC+TGG | + | chr8.2:38826854-38826873 | MS.gene34850:CDS | 35.0% | |
| TAATAAGAGGCAATGTCAGT+TGG | + | chr8.2:38824658-38824677 | MS.gene34850:CDS | 35.0% | |
| TTTAGACTGCTGCTGTTATA+CGG | + | chr8.2:38826320-38826339 | MS.gene34850:intron | 35.0% | |
| TTTGACAAAGGTTGAACAAC+AGG | - | chr8.2:38826782-38826801 | None:intergenic | 35.0% | |
| ! | ACACCATCACAAGTACTTTT+CGG | + | chr8.2:38826736-38826755 | MS.gene34850:CDS | 35.0% |
| ! | ACTTTAGCAACCTGTCTTTT+AGG | - | chr8.2:38825148-38825167 | None:intergenic | 35.0% |
| ! | CTTTAGCAACCTGTCTTTTA+GGG | - | chr8.2:38825147-38825166 | None:intergenic | 35.0% |
| ! | TTGACAAGTTTGGAGTGTAA+GGG | + | chr8.2:38825618-38825637 | MS.gene34850:CDS | 35.0% |
| ! | TTTGACAAGTTTGGAGTGTA+AGG | + | chr8.2:38825617-38825636 | MS.gene34850:CDS | 35.0% |
| !! | ATACCATCATTGATTCACTG+TGG | - | chr8.2:38824792-38824811 | None:intergenic | 35.0% |
| !! | GTGCTACTGTTTTCATTCAT+GGG | + | chr8.2:38826347-38826366 | MS.gene34850:intron | 35.0% |
| !! | TCAACTTCTTCTGAGGTAAA+TGG | - | chr8.2:38826598-38826617 | None:intergenic | 35.0% |
| !! | TGAGTAATAGCTTTGATTCG+AGG | - | chr8.2:38825840-38825859 | None:intergenic | 35.0% |
| !! | TGTGCTACTGTTTTCATTCA+TGG | + | chr8.2:38826346-38826365 | MS.gene34850:intron | 35.0% |
| !!! | TGTCAAGATTTTAGTTGACG+TGG | + | chr8.2:38825259-38825278 | MS.gene34850:intron | 35.0% |
| AAGAACACAGAGGAAACACA+GGG | - | chr8.2:38826456-38826475 | None:intergenic | 40.0% | |
| AAGCTTTCCTTGTAGACTAC+TGG | - | chr8.2:38824749-38824768 | None:intergenic | 40.0% | |
| GTGTGTACCATACTCTATGA+TGG | - | chr8.2:38826287-38826306 | None:intergenic | 40.0% | |
| TATGGATCCAGTAGTCTACA+AGG | + | chr8.2:38824739-38824758 | MS.gene34850:CDS | 40.0% | |
| TGATCCTCGAGTTTGATACT+CGG | + | chr8.2:38826208-38826227 | MS.gene34850:intron | 40.0% | |
| ! | AAGTTTCAAGTCAACGTCTG+TGG | + | chr8.2:38825433-38825452 | MS.gene34850:intron | 40.0% |
| AAAGGGATGCTGATCTGCAA+TGG | - | chr8.2:38824591-38824610 | None:intergenic | 45.0% | |
| AAGACCGAGTATCAAACTCG+AGG | - | chr8.2:38826215-38826234 | None:intergenic | 45.0% | |
| ACAGCCCTACACAATCTTCT+TGG | - | chr8.2:38825510-38825529 | None:intergenic | 45.0% | |
| ACTAGCAAATGCCAATGGCA+AGG | + | chr8.2:38825863-38825882 | MS.gene34850:CDS | 45.0% | |
| AGGACAAAGACTCGCTCATT+TGG | - | chr8.2:38824910-38824929 | None:intergenic | 45.0% | |
| CAAGAACACAGAGGAAACAC+AGG | - | chr8.2:38826457-38826476 | None:intergenic | 45.0% | |
| CACCATTGCAGCTAAGATCA+GGG | - | chr8.2:38825461-38825480 | None:intergenic | 45.0% | |
| CCAGAAATGCAAGAACACAG+AGG | - | chr8.2:38826466-38826485 | None:intergenic | 45.0% | |
| CCTCTGTGTTCTTGCATTTC+TGG | + | chr8.2:38826463-38826482 | MS.gene34850:intron | 45.0% | |
| CTGATCTGCAATGGAAGGAA+TGG | - | chr8.2:38824582-38824601 | None:intergenic | 45.0% | |
| CTGCTTCTGCTGATGTTCTT+AGG | + | chr8.2:38826840-38826859 | MS.gene34850:CDS | 45.0% | |
| TGGCCACAGTGAATCAATGA+TGG | + | chr8.2:38824786-38824805 | MS.gene34850:intron | 45.0% | |
| ! | ATTTGCGTCGATCACTTGCT+GGG | + | chr8.2:38825733-38825752 | MS.gene34850:CDS | 45.0% |
| ! | CTTGATATCGCCTTGTTCGT+TGG | + | chr8.2:38824766-38824785 | MS.gene34850:CDS | 45.0% |
| ! | TATTTGCGTCGATCACTTGC+TGG | + | chr8.2:38825732-38825751 | MS.gene34850:CDS | 45.0% |
| !! | AGCAACCTGTCTTTTAGGGA+CGG | - | chr8.2:38825143-38825162 | None:intergenic | 45.0% |
| !! | CTGCCGAAAAGTACTTGTGA+TGG | - | chr8.2:38826742-38826761 | None:intergenic | 45.0% |
| AGATCAGCATCCCTTTGCCA+AGG | + | chr8.2:38824595-38824614 | MS.gene34850:CDS | 50.0% | |
| GCACCATTGCAGCTAAGATC+AGG | - | chr8.2:38825462-38825481 | None:intergenic | 50.0% | |
| GGAGCTATGTGTGACAGAGT+TGG | + | chr8.2:38826520-38826539 | MS.gene34850:intron | 50.0% | |
| GGATGCTGATCTGCAATGGA+AGG | - | chr8.2:38824587-38824606 | None:intergenic | 50.0% | |
| TGCCCTGATCTTAGCTGCAA+TGG | + | chr8.2:38825456-38825475 | MS.gene34850:intron | 50.0% | |
| TGTTGCCGTCCCTAAAAGAC+AGG | + | chr8.2:38825135-38825154 | MS.gene34850:intron | 50.0% | |
| TTCACTGTGGCCAACGAACA+AGG | - | chr8.2:38824779-38824798 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 38824536 | 38826907 | 38824536 | ID=MS.gene34850 |
| chr8.2 | mRNA | 38824536 | 38826907 | 38824536 | ID=MS.gene34850.t1;Parent=MS.gene34850 |
| chr8.2 | exon | 38824536 | 38824793 | 38824536 | ID=MS.gene34850.t1.exon1;Parent=MS.gene34850.t1 |
| chr8.2 | CDS | 38824536 | 38824793 | 38824536 | ID=cds.MS.gene34850.t1;Parent=MS.gene34850.t1 |
| chr8.2 | exon | 38825615 | 38825884 | 38825615 | ID=MS.gene34850.t1.exon2;Parent=MS.gene34850.t1 |
| chr8.2 | CDS | 38825615 | 38825884 | 38825615 | ID=cds.MS.gene34850.t1;Parent=MS.gene34850.t1 |
| chr8.2 | exon | 38826698 | 38826907 | 38826698 | ID=MS.gene34850.t1.exon3;Parent=MS.gene34850.t1 |
| chr8.2 | CDS | 38826698 | 38826907 | 38826698 | ID=cds.MS.gene34850.t1;Parent=MS.gene34850.t1 |
| Gene Sequence |
| Protein sequence |
